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Conserved domains on  [gi|34014458|dbj|BAC81855|]
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agnoprotein [JC polyomavirus]

Protein Classification

PHA02621 family protein( domain architecture ID 10010118)

PHA02621 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02621 PHA02621
agnoprotein; Provisional
 1-68 3.45e-25

agnoprotein; Provisional


:

Pssm-ID: 177440  Cd Length: 68  Bit Score: 88.06  E-value: 3.45e-25
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 34014458   1 MVLRQLSRKASVKVSKTWSGTKKRAQRILIFLLEFLLDFCTGEDSVDGKKRQKHSGLTQQTYSALPEP 68
Cdd:PHA02621  1 MVLRQLSRQASVKVGKTWTGTKKRAQRIFIFILELLLDFCRGEDSVDGKKKKDSLTDKTETVTEKPES 68
 
Name Accession Description Interval E-value
PHA02621 PHA02621
agnoprotein; Provisional
 1-68 3.45e-25

agnoprotein; Provisional


Pssm-ID: 177440  Cd Length: 68  Bit Score: 88.06  E-value: 3.45e-25
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 34014458   1 MVLRQLSRKASVKVSKTWSGTKKRAQRILIFLLEFLLDFCTGEDSVDGKKRQKHSGLTQQTYSALPEP 68
Cdd:PHA02621  1 MVLRQLSRQASVKVGKTWTGTKKRAQRIFIFILELLLDFCRGEDSVDGKKKKDSLTDKTETVTEKPES 68
Polyoma_agno pfam01736
Polyomavirus agnoprotein; This family consist of the DNA binding protein or agnoprotein from ...
 1-63 3.71e-10

Polyomavirus agnoprotein; This family consist of the DNA binding protein or agnoprotein from various polyomaviruses. This protein is highly basic and can bind single stranded and double stranded DNA. Mutations in the agnoprotein produce smaller viral plaques, hence its function is not essential for growth in tissue culture cells but something has slowed in the normal replication cycle. There is also evidence suggesting that the agnogene and agnoprotein act as regulators of structural protein synthesis.


Pssm-ID: 279993  Cd Length: 62  Bit Score: 50.14  E-value: 3.71e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 34014458    1 MVLRQLSRKASVKVSKTWSGTKKRAQRILIFLLEFLLDFCTGEDSVDGkKRQKHSGLTQQTYS 63
Cdd:pfam01736  1 MVLRRLSRQASVKVRRSWTESKKTAQRLFVFVLELLLQFCEGEDTVDG-KRKKPERLTEKPES 62
 
Name Accession Description Interval E-value
PHA02621 PHA02621
agnoprotein; Provisional
 1-68 3.45e-25

agnoprotein; Provisional


Pssm-ID: 177440  Cd Length: 68  Bit Score: 88.06  E-value: 3.45e-25
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 34014458   1 MVLRQLSRKASVKVSKTWSGTKKRAQRILIFLLEFLLDFCTGEDSVDGKKRQKHSGLTQQTYSALPEP 68
Cdd:PHA02621  1 MVLRQLSRQASVKVGKTWTGTKKRAQRIFIFILELLLDFCRGEDSVDGKKKKDSLTDKTETVTEKPES 68
Polyoma_agno pfam01736
Polyomavirus agnoprotein; This family consist of the DNA binding protein or agnoprotein from ...
 1-63 3.71e-10

Polyomavirus agnoprotein; This family consist of the DNA binding protein or agnoprotein from various polyomaviruses. This protein is highly basic and can bind single stranded and double stranded DNA. Mutations in the agnoprotein produce smaller viral plaques, hence its function is not essential for growth in tissue culture cells but something has slowed in the normal replication cycle. There is also evidence suggesting that the agnogene and agnoprotein act as regulators of structural protein synthesis.


Pssm-ID: 279993  Cd Length: 62  Bit Score: 50.14  E-value: 3.71e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 34014458    1 MVLRQLSRKASVKVSKTWSGTKKRAQRILIFLLEFLLDFCTGEDSVDGkKRQKHSGLTQQTYS 63
Cdd:pfam01736  1 MVLRRLSRQASVKVRRSWTESKKTAQRLFVFVLELLLQFCEGEDTVDG-KRKKPERLTEKPES 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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