|
Name |
Accession |
Description |
Interval |
E-value |
| GCD |
cd01151 |
Glutaryl-CoA dehydrogenase; Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, ... |
48-434 |
0e+00 |
|
Glutaryl-CoA dehydrogenase; Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Pssm-ID: 173840 [Multi-domain] Cd Length: 386 Bit Score: 748.03 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 48 FDWKDPLILEEQLTADEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVLGPTIKGYGCAGVSSVAYGLLT 127
Cdd:cd01151 1 FNWEDPLNLDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 128 RELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARhnPSNQSYTLS 207
Cdd:cd01151 81 REVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRAR--KDGGGYKLN 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 208 GTKTWITNSPVADLFIVWARC-EDNCIRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLPNVSSLAGP 286
Cdd:cd01151 159 GSKTWITNSPIADVFVVWARNdETGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGP 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 287 FGCLNTARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQDKATPEM 366
Cdd:cd01151 239 FKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQ 318
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 341940732 367 VSMLKRNNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAF 434
Cdd:cd01151 319 ISLLKRNNCGKALEIARTAREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITGIQAF 386
|
|
| CaiA |
COG1960 |
Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and ... |
59-430 |
2.47e-127 |
|
Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and metabolism]; Acyl-CoA dehydrogenase related to the alkylation response protein AidB is part of the Pathway/BioSystem: Fatty acid biosynthesis
Pssm-ID: 441563 [Multi-domain] Cd Length: 381 Bit Score: 373.41 E-value: 2.47e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 59 QLTADEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVLGPTI-KGYGCAGVSSVAYGLLTRELERVDSGY 137
Cdd:COG1960 4 ELTEEQRALRDEVREFAEEEIAPEAREWDREGEFPRELWRKLAELGLLGLTIpEEYGGLGLSLVELALVLEELARADASL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 138 RSMMSVQSSlVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARhnPSNQSYTLSGTKTWITNSP 217
Cdd:COG1960 84 ALPVGVHNG-AAEALLRFGTEEQKERYLPRLASGEWIGAFALTEPGAGSDAAALRTTAV--RDGDGYVLNGQKTFITNAP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 218 VADLFIVWARCEDNC----IRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLPNVS-SLAGPFGCLNT 292
Cdd:COG1960 161 VADVILVLARTDPAAghrgISLFLVPKDTPGVTVGRIEDKMGLRGSDTGELFFDDVRVPAENLLGEEGkGFKIAMSTLNA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 293 ARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMVSMLKR 372
Cdd:COG1960 241 GRLGLAAQALGIAEAALELAVAYAREREQFGRPIADFQAVQHRLADMAAELEAARALVYRAAWLLDAGEDAALEAAMAKL 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 341940732 373 NNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 430
Cdd:COG1960 321 FATEAALEVADEALQIHGGYGYTREYPLERLYRDARILTIYEGTNEIQRLIIARRLLG 378
|
|
| ACAD |
cd00567 |
Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal ... |
65-426 |
1.10e-93 |
|
Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC)
Pssm-ID: 173838 [Multi-domain] Cd Length: 327 Bit Score: 285.33 E-value: 1.10e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 65 KLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVlgptikgygcagvssvayglltrelervdsgyrsmmsvq 144
Cdd:cd00567 4 RELRDSAREFAAEELEPYARERRETPEEPWELLAELGLLLG--------------------------------------- 44
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 145 sslvMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARhnPSNQSYTLSGTKTWITNSPVADLFIV 224
Cdd:cd00567 45 ----AALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTAR--KDGDGYVLNGRKIFISNGGDADLFIV 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 225 WARCEDN-----CIRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLPNV-SSLAGPFGCLNTARYGIT 298
Cdd:cd00567 119 LARTDEEgpghrGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEgGGFELAMKGLNVGRLLLA 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 299 WGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQDKA-TPEMVSMLKRNNCGK 377
Cdd:cd00567 199 AVALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDeARLEAAMAKLFATEA 278
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 341940732 378 ALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGR 426
Cdd:cd00567 279 AREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327
|
|
| PLN02526 |
PLN02526 |
acyl-coenzyme A oxidase |
56-434 |
4.45e-92 |
|
acyl-coenzyme A oxidase
Pssm-ID: 178141 [Multi-domain] Cd Length: 412 Bit Score: 284.44 E-value: 4.45e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 56 LEEQLTADEKLIRDTFRNyCQERLMSRILLANRNEV---FHrdIVYEMGELGVLGPTIKGYGCAGVSSVAYGLLTRELER 132
Cdd:PLN02526 25 FDDLLTPEEQALRKRVRE-CMEKEVAPIMTEYWEKAefpFH--IIPKLGSLGIAGGTIKGYGCPGLSITASAIATAEVAR 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 133 VDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSnqSYTLSGTKTW 212
Cdd:PLN02526 102 VDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEG--GWILNGQKRW 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 213 ITNSPVADLFIVWAR-CEDNCIRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLPNVSSLAGPFGCLN 291
Cdd:PLN02526 180 IGNSTFADVLVIFARnTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVNSFQDTNKVLA 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 292 TARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMVSMLK 371
Cdd:PLN02526 260 VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGK 339
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 341940732 372 RNNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAF 434
Cdd:PLN02526 340 AWITKKARETVALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGIASF 402
|
|
| SCAD_SBCAD |
cd01158 |
Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA ... |
63-428 |
1.52e-88 |
|
Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases; Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Pssm-ID: 173847 [Multi-domain] Cd Length: 373 Bit Score: 273.76 E-value: 1.52e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 63 DEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVLGPTI-KGYGCAGVSSVAYGLLTRELERVDSGYRSMM 141
Cdd:cd01158 2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIpEEYGGAGLDFLAYAIAIEELAKVDASVAVIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 142 SVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNqsYTLSGTKTWITNSPVADL 221
Cdd:cd01158 82 SVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDD--YVLNGSKMWITNGGEADF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 222 FIVWARCED----NCIRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLpnvsslaGPFG--------C 289
Cdd:cd01158 160 YIVFAVTDPskgyRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENIL-------GEEGegfkiamqT 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 290 LNTARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMVSM 369
Cdd:cd01158 233 LDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAM 312
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 341940732 370 LKRNNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 428
Cdd:cd01158 313 AKLFASEVAMRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHL 371
|
|
| IVD |
cd01156 |
Isovaleryl-CoA dehydrogenase; Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA ... |
60-428 |
1.24e-66 |
|
Isovaleryl-CoA dehydrogenase; Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Pssm-ID: 173845 [Multi-domain] Cd Length: 376 Bit Score: 217.28 E-value: 1.24e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 60 LTADEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVLGPTI-KGYGCAGVSSVAYGLLTRELERVDSGYR 138
Cdd:cd01156 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITApEEYGGSGMGYLAHVIIMEEISRASGSVA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 139 SMMSVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNpsNQSYTLSGTKTWITNSPV 218
Cdd:cd01156 82 LSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKK--GDRYVLNGSKMWITNGPD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 219 ADLFIVWARCEDNC----IRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLPNVSS-----LAGpfgc 289
Cdd:cd01156 160 ADTLVVYAKTDPSAgahgITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKgvyvlMSG---- 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 290 LNTARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEitlgLHACLQL----GRLKDQDKATPE 365
Cdd:cd01156 236 LDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTR----LNASRSYlytvAKACDRGNMDPK 311
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 341940732 366 MVSMLKRNNCGKALDIARQARDILGGNGISDEYHVIRHamnLEAVNTYE---GTHDIHALILGRAI 428
Cdd:cd01156 312 DAAGVILYAAEKATQVALDAIQILGGNGYINDYPTGRL---LRDAKLYEigaGTSEIRRMVIGREL 374
|
|
| VLCAD |
cd01161 |
Very long chain acyl-CoA dehydrogenase; VLCAD is an acyl-CoA dehydrogenase (ACAD), which is ... |
38-432 |
5.64e-63 |
|
Very long chain acyl-CoA dehydrogenase; VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Pssm-ID: 173850 [Multi-domain] Cd Length: 409 Bit Score: 208.86 E-value: 5.64e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 38 IRPAKSSRPVFdwKDPLILEEQLTADEKLIRDTFRNYCQERLMSRILlaNRNEVFHRDIVYEMGELGVLGPTI-KGYGCA 116
Cdd:cd01161 7 FLGDIVTKQVF--PYPSVLTEEQTEELNMLVGPVEKFFEEVNDPAKN--DQLEKIPRKTLTQLKELGLFGLQVpEEYGGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 117 GVSSVAYGLLTrELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRAR 196
Cdd:cd01161 83 GLNNTQYARLA-EIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 197 HNPSNQSYTLSGTKTWITNSPVADLFIVWARCEDNCIRG--------FILEKGMRGLSAPRIEGKFSLRASATGMIIMDS 268
Cdd:cd01161 162 LSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGsvkdkitaFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFED 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 269 VEVPEENVLPNVSS---LAgpFGCLNTARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITL 345
Cdd:cd01161 242 VKIPVENVLGEVGDgfkVA--MNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 346 GLHACLQLGRLKDQD-KATPEMVSMLKRNNCGKALD-IARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALI 423
Cdd:cd01161 320 TESMAYMTSGNMDRGlKAEYQIEAAISKVFASEAAWlVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLF 399
|
....*....
gi 341940732 424 LgrAITGIQ 432
Cdd:cd01161 400 I--ALTGLQ 406
|
|
| LCAD |
cd01160 |
Long chain acyl-CoA dehydrogenase; LCAD is an acyl-CoA dehydrogenases (ACAD), which is found ... |
62-428 |
3.99e-53 |
|
Long chain acyl-CoA dehydrogenase; LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Pssm-ID: 173849 [Multi-domain] Cd Length: 372 Bit Score: 181.93 E-value: 3.99e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 62 ADEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVLGPTI-KGYGCAGVSSVAYGLLTRELERVdSGYRSM 140
Cdd:cd01160 1 EEHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFpEEYGGIGGDLLSAAVLWEELARA-GGSGPG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 141 MSVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNqsYTLSGTKTWITNSPVAD 220
Cdd:cd01160 80 LSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDH--YVLNGSKTFITNGMLAD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 221 LFIVWARCEDNC-----IRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLPNVS-SLAGPFGCLNTAR 294
Cdd:cd01160 158 VVIVVARTGGEArgaggISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENkGFYYLMQNLPQER 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 295 YGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLG---LHACLQLGRLKDQDKATpemVSMLK 371
Cdd:cd01160 238 LLIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTrafLDNCAWRHEQGRLDVAE---ASMAK 314
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 341940732 372 rNNCGKALD-IARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 428
Cdd:cd01160 315 -YWATELQNrVAYECVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQM 371
|
|
| IBD |
cd01162 |
Isobutyryl-CoA dehydrogenase; Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- ... |
60-430 |
2.67e-52 |
|
Isobutyryl-CoA dehydrogenase; Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Pssm-ID: 173851 [Multi-domain] Cd Length: 375 Bit Score: 179.95 E-value: 2.67e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 60 LTADEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVLGPTIKG-YGCAGVSSVAYGLLTRELERVDSGYR 138
Cdd:cd01162 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDdVGGSGLSRLDASIIFEALSTGCVSTA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 139 SMMSVQSsLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHnpSNQSYTLSGTKTWITNSPV 218
Cdd:cd01162 81 AYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVR--EGDHYVLNGSKAFISGAGD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 219 ADLFIVWARCEDNCIRG---FILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLPN-----VSSLAGpfgcL 290
Cdd:cd01162 158 SDVYVVMARTGGEGPKGiscFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGegqgfGIAMAG----L 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 291 NTARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEIT----LGLHACLQLGRlKDQDKAtpEM 366
Cdd:cd01162 234 NGGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVasrlMVRRAASALDR-GDPDAV--KL 310
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 341940732 367 VSMLKRNNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 430
Cdd:cd01162 311 CAMAKRFATDECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLT 374
|
|
| MCAD |
cd01157 |
Medium chain acyl-CoA dehydrogenase; MCADs are mitochondrial beta-oxidation enzymes, which ... |
60-430 |
3.65e-47 |
|
Medium chain acyl-CoA dehydrogenase; MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Pssm-ID: 173846 [Multi-domain] Cd Length: 378 Bit Score: 166.22 E-value: 3.65e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 60 LTADEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVLGPTI-KGYGCAGVSSVAYGLLTRELERVDSGYR 138
Cdd:cd01157 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIpEDCGGLGLGTFDTCLITEELAYGCTGVQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 139 SMMSVqSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNpsNQSYTLSGTKTWITNSPV 218
Cdd:cd01157 81 TAIEA-NSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKK--GDEYIINGQKMWITNGGK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 219 ADLFIVWARCEDN-------CIRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLpnVSSLAG---PFG 288
Cdd:cd01157 158 ANWYFLLARSDPDpkcpaskAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVL--IGEGAGfkiAMG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 289 CLNTARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMVS 368
Cdd:cd01157 236 AFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYAS 315
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 341940732 369 MLKRNNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 430
Cdd:cd01157 316 IAKAFAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLG 377
|
|
| PTZ00461 |
PTZ00461 |
isovaleryl-CoA dehydrogenase; Provisional |
3-342 |
2.15e-45 |
|
isovaleryl-CoA dehydrogenase; Provisional
Pssm-ID: 185640 [Multi-domain] Cd Length: 410 Bit Score: 162.41 E-value: 2.15e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 3 LRGVSARLLSRRSGlrfprfPRTWSSAAAHTektqirpaKSSRPVFDWKDPlileeqlTADEKLIRDTFRNYCQERLMSR 82
Cdd:PTZ00461 1 MRRVLQSSLGRRSA------TCGWTAAATMT--------SASRAFMDLYNP-------TPEHAALRETVAKFSREVVDKH 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 83 ILLANRNEVFHRDIVYEMGELGVLGPTI-KGYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQR 161
Cdd:PTZ00461 60 AREDDINMHFNRDLFKQLGDLGVMGVTVpEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQR 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 162 QKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNpSNQSYTLSGTKTWITNSPVADLFIVWARCeDNCIRGFILEKG 241
Cdd:PTZ00461 140 ARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKD-SNGNYVLNGSKIWITNGTVADVFLIYAKV-DGKITAFVVERG 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 242 MRGLS-APRIEgKFSLRASATGMIIMDSVEVPEENVL-PNVSSLAGPFGCLNTARYGITWGVLGAAEFCLHTARQYALDR 319
Cdd:PTZ00461 218 TKGFTqGPKID-KCGMRASHMCQLFFEDVVVPAENLLgEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELMTSYASER 296
|
330 340
....*....|....*....|...
gi 341940732 320 IQFGVPLARNQLVQKKLADMLTE 342
Cdd:PTZ00461 297 KAFGKPISNFGQIQRYIAEGYAD 319
|
|
| PLN02519 |
PLN02519 |
isovaleryl-CoA dehydrogenase |
68-426 |
9.93e-45 |
|
isovaleryl-CoA dehydrogenase
Pssm-ID: 215284 [Multi-domain] Cd Length: 404 Bit Score: 160.43 E-value: 9.93e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 68 RDTFRNYCQERLMSRILLANRNEVFHRDIVY--EMGELGVLGPTI-KGYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQ 144
Cdd:PLN02519 34 KESVQQFAQENIAPHAAAIDATNSFPKDVNLwkLMGDFNLHGITApEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAH 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 145 SSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRArhNPSNQSYTLSGTKTWITNSPVADLFIV 224
Cdd:PLN02519 114 SNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKA--ERVDGGYVLNGNKMWCTNGPVAQTLVV 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 225 WARCEDNC----IRGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLPNVS-SLAGPFGCLNTARYGITW 299
Cdd:PLN02519 192 YAKTDVAAgskgITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGkGVYVMMSGLDLERLVLAA 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 300 GVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMVSMLKRNNCGKAL 379
Cdd:PLN02519 272 GPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGVILCAAERAT 351
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 341940732 380 DIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGR 426
Cdd:PLN02519 352 QVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGR 398
|
|
| Acyl-CoA_dh_N |
pfam02771 |
Acyl-CoA dehydrogenase, N-terminal domain; The N-terminal domain of Acyl-CoA dehydrogenase is ... |
61-172 |
8.72e-40 |
|
Acyl-CoA dehydrogenase, N-terminal domain; The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain.
Pssm-ID: 460686 [Multi-domain] Cd Length: 113 Bit Score: 138.36 E-value: 8.72e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 61 TADEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVLGPTI-KGYGCAGVSSVAYGLLTRELERVDSGYRS 139
Cdd:pfam02771 1 TEEQEALRDTVREFAEEEIAPHAAEWDEEGEFPRELWKKLGELGLLGITIpEEYGGAGLDYLAYALVAEELARADASVAL 80
|
90 100 110
....*....|....*....|....*....|...
gi 341940732 140 MMSVQSSLVMHPIYTYGSEEQRQKYLPGLAKGE 172
Cdd:pfam02771 81 ALSVHSSLGAPPILRFGTEEQKERYLPKLASGE 113
|
|
| Acyl-CoA_dh_1 |
pfam00441 |
Acyl-CoA dehydrogenase, C-terminal domain; C-terminal domain of Acyl-CoA dehydrogenase is an ... |
288-428 |
2.44e-27 |
|
Acyl-CoA dehydrogenase, C-terminal domain; C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.
Pssm-ID: 395354 [Multi-domain] Cd Length: 149 Bit Score: 106.18 E-value: 2.44e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 288 GCLNTARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMV 367
Cdd:pfam00441 9 ETLNHERLAIAAMALGLARRALDEALAYARRRKAFGRPLIDFQLVRHKLAEMAAEIEAARLLVYRAAEALDAGGPDGAEA 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 341940732 368 SMLKRNNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 428
Cdd:pfam00441 89 SMAKLYASEAAVEVADLAMQLHGGYGYLREYPVERLYRDARVLRIGEGTSEIQRNIIARRL 149
|
|
| ACAD_fadE5 |
cd01153 |
Putative acyl-CoA dehydrogenases similar to fadE5; Putative acyl-CoA dehydrogenase (ACAD). ... |
152-429 |
9.30e-27 |
|
Putative acyl-CoA dehydrogenases similar to fadE5; Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Pssm-ID: 173842 [Multi-domain] Cd Length: 407 Bit Score: 110.94 E-value: 9.30e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 152 IYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNpSNQSYTLSGTKTWITN--SPVAD--LFIVWAR 227
Cdd:cd01153 96 LLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQ-ADGSWRINGVKRFISAgeHDMSEniVHLVLAR 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 228 CEDNC--IRG---FILEK----GMR-GLSAPRIEGKFSLRASATGMIIMDSVEVP---EENvlpnvSSLAGPFGCLNTAR 294
Cdd:cd01153 175 SEGAPpgVKGlslFLVPKflddGERnGVTVARIEEKMGLHGSPTCELVFDNAKGEligEEG-----MGLAQMFAMMNGAR 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 295 YGITWGVLGAAEFCLHTARQYALDRIQFGVPLA-------------RNQLVQKKL-------ADM--LTEITLGLHACLQ 352
Cdd:cd01153 250 LGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKaapavtiihhpdvRRSLMTQKAyaegsraLDLytATVQDLAERKATE 329
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 341940732 353 LGRLKDQDKATPEMVSMLKRNNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHAL-ILGRAIT 429
Cdd:cd01153 330 GEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALdLIGRKIV 407
|
|
| PRK12341 |
PRK12341 |
acyl-CoA dehydrogenase; |
146-428 |
3.79e-25 |
|
acyl-CoA dehydrogenase;
Pssm-ID: 183454 [Multi-domain] Cd Length: 381 Bit Score: 105.97 E-value: 3.79e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 146 SLVMHPIYTYGSEEQ-RQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNpsNQSYTLSGTKTWITNSPVADLFIV 224
Cdd:PRK12341 90 GQCIHSMRRFGSAEQlRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRK--NGKVYLNGQKTFITGAKEYPYMLV 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 225 WAR-CED----NCIRGFILEKGMRGLSAPRIEgKFSLRASATGMIIMDSVEVPEE-----------NVLPNvsslagpfg 288
Cdd:PRK12341 168 LARdPQPkdpkKAFTLWWVDSSKPGIKINPLH-KIGWHMLSTCEVYLDNVEVEESdlvgeegmgflNVMYN--------- 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 289 cLNTARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEI----TLGLHACLQlgrlKDQDKATP 364
Cdd:PRK12341 238 -FEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIenmrNMVYKVAWQ----ADNGQSLR 312
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 341940732 365 EMVSMLKRNNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 428
Cdd:PRK12341 313 TSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQI 376
|
|
| Acyl-CoA_dh_M |
pfam02770 |
Acyl-CoA dehydrogenase, middle domain; Central domain of Acyl-CoA dehydrogenase has a ... |
176-267 |
9.87e-24 |
|
Acyl-CoA dehydrogenase, middle domain; Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold.
Pssm-ID: 460685 [Multi-domain] Cd Length: 95 Bit Score: 94.65 E-value: 9.87e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 176 CFGLTEPNHGSDPGGMETRARhNPSNQSYTLSGTKTWITNSPVADLFIVWARCE----DNCIRGFILEKGMRGLSAPRIE 251
Cdd:pfam02770 1 AFALTEPGAGSDVASLKTTAA-DGDGGGWVLNGTKWWITNAGIADLFLVLARTGgddrHGGISLFLVPKDAPGVSVRRIE 79
|
90
....*....|....*.
gi 341940732 252 GKFSLRASATGMIIMD 267
Cdd:pfam02770 80 TKLGVRGLPTGELVFD 95
|
|
| PRK03354 |
PRK03354 |
crotonobetainyl-CoA dehydrogenase; Validated |
56-428 |
4.89e-23 |
|
crotonobetainyl-CoA dehydrogenase; Validated
Pssm-ID: 179566 [Multi-domain] Cd Length: 380 Bit Score: 99.91 E-value: 4.89e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 56 LEEQLTADEKLIRDTFRNY-CQERLMSRILLANRNEVFHRDIVYEMGELG---VLGPTIKGYGCAGVSSVA--------Y 123
Cdd:PRK03354 1 MDFNLNDEQELFVAGIRELmASENWEAYFAECDRDSVYPERFVKALADMGidsLLIPEEHGGLDAGFVTLAavwmelgrL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 124 GLLTRELERVDSGYRSMMSvqsslvmhpiytYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRarHNPSNQS 203
Cdd:PRK03354 81 GAPTYVLYQLPGGFNTFLR------------EGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTT--YTRRNGK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 204 YTLSGTKTWITNSPVADLFIVWARCEDNCIRG----FILEKGMRGLSAPRIEgKFSLRASATGMIIMDSVEVPEENVlpn 279
Cdd:PRK03354 147 VYLNGSKCFITSSAYTPYIVVMARDGASPDKPvyteWFVDMSKPGIKVTKLE-KLGLRMDSCCEITFDDVELDEKDM--- 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 280 vsslagpFGC-----------LNTARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLH 348
Cdd:PRK03354 223 -------FGRegngfnrvkeeFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKN 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 349 ACLQLGRLKDQDKATPEMVSMLKRNNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 428
Cdd:PRK03354 296 MLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAV 375
|
|
| AidB |
cd01154 |
Proteins involved in DNA damage response, similar to the AidB gene product; AidB is one of ... |
152-428 |
6.38e-22 |
|
Proteins involved in DNA damage response, similar to the AidB gene product; AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Pssm-ID: 173843 [Multi-domain] Cd Length: 418 Bit Score: 97.06 E-value: 6.38e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 152 IYTYGSEEQRQkYLPGLA----KGELLGCFGLTEPNHGSDPGGMETRARHNPSNqSYTLSGTKtWITNSPVADLFIVWAR 227
Cdd:cd01154 123 LRKYGPEELKQ-YLPGLLsdryKTGLLGGTWMTEKQGGSDLGANETTAERSGGG-VYRLNGHK-WFASAPLADAALVLAR 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 228 CED--NCIRGF-------ILEKGMR-GLSAPRIEGKFSLRASATGMIIMDSVEV----PEENVLPNVSSLagpfgcLNTA 293
Cdd:cd01154 200 PEGapAGARGLslflvprLLEDGTRnGYRIRRLKDKLGTRSVATGEVEFDDAEAyligDEGKGIYYILEM------LNIS 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 294 RYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLkdQDKATPE-------- 365
Cdd:cd01154 274 RLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARA--FDRAAADkpveahma 351
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 341940732 366 --MVSMLKRNNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 428
Cdd:cd01154 352 rlATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVL 416
|
|
| AXO |
cd01150 |
Peroxisomal acyl-CoA oxidase; Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in ... |
44-415 |
1.86e-18 |
|
Peroxisomal acyl-CoA oxidase; Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Pssm-ID: 173839 [Multi-domain] Cd Length: 610 Bit Score: 87.77 E-value: 1.86e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 44 SRPVFDWKD-PLILEEQLTADeKLIRDTFRNYCQERLMSRILLAN---RNEVFH------RDIVYEMGELGVLGPTiKGY 113
Cdd:cd01150 8 ASATFDWKAlTHILEGGEENL-RRKREVERELESDPLFQRELPSKhlsREELYEelkrkaKTDVERMGELMADDPE-KML 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 114 GCagvssvaygllTRELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMET 193
Cdd:cd01150 86 AL-----------TNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLET 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 194 RARHNPSNQSY-----TLSGTKTWITNSPV-ADLFIVWAR--CEDNC--IRGFILE-------KGMRGLSAPRIEGKFSL 256
Cdd:cd01150 155 TATYDPLTQEFvintpDFTATKWWPGNLGKtATHAVVFAQliTPGKNhgLHAFIVPirdpkthQPLPGVTVGDIGPKMGL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 257 RASATGMIIMDSVEVPEEN-------VLPN---VSSLAGP-------FGCLNTARYGITWGVLGAAEFCLHTARQYALDR 319
Cdd:cd01150 235 NGVDNGFLQFRNVRIPRENllnrfgdVSPDgtyVSPFKDPnkrygamLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVR 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 320 IQFG-------VPLARNQLVQKKLADML----------TEITLGLHAClQLGRLKDQDKATPEM---VSMLKRNN---CG 376
Cdd:cd01150 315 RQFGpkpsdpeVQILDYQLQQYRLFPQLaaayafhfaaKSLVEMYHEI-IKELLQGNSELLAELhalSAGLKAVAtwtAA 393
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 341940732 377 KALDIARQArdiLGGNGISDE--YHVIRhAMNlEAVNTYEG 415
Cdd:cd01150 394 QGIQECREA---CGGHGYLAMnrLPTLR-DDN-DPFCTYEG 429
|
|
| PTZ00456 |
PTZ00456 |
acyl-CoA dehydrogenase; Provisional |
124-319 |
3.09e-14 |
|
acyl-CoA dehydrogenase; Provisional
Pssm-ID: 185635 [Multi-domain] Cd Length: 622 Bit Score: 74.90 E-value: 3.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 124 GLLTRELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNpSNQS 203
Cdd:PTZ00456 132 GFITRELMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPS-ADGS 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 204 YTLSGTKTWIT----NSPVADLFIVWARCEDNCIRGfileKGMRGLSAPR-------------------IEGKFSLRASA 260
Cdd:PTZ00456 211 YKITGTKIFISagdhDLTENIVHIVLARLPNSLPTT----KGLSLFLVPRhvvkpdgsletaknvkcigLEKKMGIKGSS 286
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 341940732 261 TG-MIIMDSVE--VPEENvlpnvSSLAGPFGCLNTARYGITWGVLGAAEFCLHTARQYALDR 319
Cdd:PTZ00456 287 TCqLSFENSVGylIGEPN-----AGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARER 343
|
|
| PRK13026 |
PRK13026 |
acyl-CoA dehydrogenase; Reviewed |
147-396 |
3.84e-13 |
|
acyl-CoA dehydrogenase; Reviewed
Pssm-ID: 237277 [Multi-domain] Cd Length: 774 Bit Score: 71.53 E-value: 3.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 147 LVMHpiytYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGME-----TRARHN-PSNQSYTLSGTKTWITNSPVAD 220
Cdd:PRK13026 170 LLTH----YGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPdtgivCRGEFEgEEVLGLRLTWDKRYITLAPVAT 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 221 LFIVWARCEDNciRGFILEKGMRGL-------SAPRIE-GKfslRASATGMIIMD------SVEVPEENVlpnvssLAGP 286
Cdd:PRK13026 246 VLGLAFKLRDP--DGLLGDKKELGItcaliptDHPGVEiGR---RHNPLGMAFMNgttrgkDVFIPLDWI------IGGP 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 287 ----------FGCLNTARyGITWGVLGAA--EFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTeITLGLHACLQLG 354
Cdd:PRK13026 315 dyagrgwrmlVECLSAGR-GISLPALGTAsgHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAG-NTYLLEAARRLT 392
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 341940732 355 RLKDQDKATPEMVS-MLKRNNCGKALDIARQARDILGGNGISD 396
Cdd:PRK13026 393 TTGLDLGVKPSVVTaIAKYHMTELARDVVNDAMDIHAGKGIQL 435
|
|
| ACAD_FadE2 |
cd01155 |
Acyl-CoA dehydrogenases similar to fadE2; FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA ... |
149-398 |
5.81e-13 |
|
Acyl-CoA dehydrogenases similar to fadE2; FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Pssm-ID: 173844 [Multi-domain] Cd Length: 394 Bit Score: 70.11 E-value: 5.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 149 MHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPN-HGSDPGGMETRARHNpsNQSYTLSGTKTWITNS--PVADLFIVW 225
Cdd:cd01155 101 MEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDvASSDATNIECSIERD--GDDYVINGRKWWSSGAgdPRCKIAIVM 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 226 ARCEDNC-----IRGFIL----EKGMRGLSAPRIEGkFSLRASATGMIIMDSVEVPEEN-VLPNVSSLAGPFGCLNTARY 295
Cdd:cd01155 179 GRTDPDGaprhrQQSMILvpmdTPGVTIIRPLSVFG-YDDAPHGHAEITFDNVRVPASNlILGEGRGFEIAQGRLGPGRI 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 296 GITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQ--DKATPEMVSMLKRN 373
Cdd:cd01155 258 HHCMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTvgNKAARKEIAMIKVA 337
|
250 260
....*....|....*....|....*
gi 341940732 374 NCGKALDIARQARDILGGNGISDEY 398
Cdd:cd01155 338 APRMALKIIDRAIQVHGAAGVSQDT 362
|
|
| ACAD_fadE6_17_26 |
cd01152 |
Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Putative acyl-CoA ... |
92-227 |
1.24e-12 |
|
Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Pssm-ID: 173841 [Multi-domain] Cd Length: 380 Bit Score: 68.91 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 92 FHRDIVYEMGELGVLGPTI-KGYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVmHPIYTYGSEEQRQKYLPGLAK 170
Cdd:cd01152 36 DRRRWQRALAAAGWAAPGWpKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGIDLAG-PTILAYGTDEQKRRFLPPILS 114
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 341940732 171 GELLGCFGLTEPNHGSDPGGMETRARHNpsNQSYTLSGTKTWITNSPVADLFIVWAR 227
Cdd:cd01152 115 GEEIWCQGFSEPGAGSDLAGLRTRAVRD--GDDWVVNGQKIWTSGAHYADWAWLLVR 169
|
|
| fadE |
PRK09463 |
acyl-CoA dehydrogenase; Reviewed |
147-191 |
8.93e-12 |
|
acyl-CoA dehydrogenase; Reviewed
Pssm-ID: 236528 [Multi-domain] Cd Length: 777 Bit Score: 67.15 E-value: 8.93e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 341940732 147 LVMHpiytYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGM 191
Cdd:PRK09463 171 LLLH----YGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSI 211
|
|
| PLN02636 |
PLN02636 |
acyl-coenzyme A oxidase |
141-348 |
1.26e-11 |
|
acyl-coenzyme A oxidase
Pssm-ID: 215342 [Multi-domain] Cd Length: 686 Bit Score: 66.81 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 141 MSVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTLS-----GTKTWITN 215
Cdd:PLN02636 141 LGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINtpndgAIKWWIGN 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 216 SPVADLFI-VWARC----------EDNCIRGFILE-KGMRGLSA-PRIE-----GKFSLRASATGMIIMDSVEVPEENV- 276
Cdd:PLN02636 221 AAVHGKFAtVFARLklpthdskgvSDMGVHAFIVPiRDMKTHQVlPGVEirdcgHKVGLNGVDNGALRFRSVRIPRDNLl 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 277 ---------------LPNVSS-LAGPFGCLNTARYGITWGVLGAAEFCLHTARQYALDRIQFGVP------LARNQLVQK 334
Cdd:PLN02636 301 nrfgdvsrdgkytssLPTINKrFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPkqpeisILDYQSQQH 380
|
250
....*....|....
gi 341940732 335 KLADMLTEiTLGLH 348
Cdd:PLN02636 381 KLMPMLAS-TYAFH 393
|
|
| PLN02443 |
PLN02443 |
acyl-coenzyme A oxidase |
156-281 |
6.68e-11 |
|
acyl-coenzyme A oxidase
Pssm-ID: 178062 [Multi-domain] Cd Length: 664 Bit Score: 64.47 E-value: 6.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 156 GSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSN-----QSYTLSGTKTWITN-SPVADLFIVWARC- 228
Cdd:PLN02443 114 GTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTdefviHSPTLTSSKWWPGGlGKVSTHAVVYARLi 193
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 341940732 229 ---EDNCIRGFILE-------KGMRGLSAPRIEGKFSLRASAT---GMIIMDSVEVPEENVLPNVS 281
Cdd:PLN02443 194 tngKDHGIHGFIVQlrslddhSPLPGVTVGDIGMKFGNGAYNTmdnGFLRFDHVRIPRDQMLMRLS 259
|
|
| PLN02312 |
PLN02312 |
acyl-CoA oxidase |
152-324 |
1.41e-05 |
|
acyl-CoA oxidase
Pssm-ID: 215178 [Multi-domain] Cd Length: 680 Bit Score: 47.46 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 152 IYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTL-----SGTKTWITNSPV-ADLFIVW 225
Cdd:PLN02312 164 IKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVIntpceSAQKYWIGGAANhATHTIVF 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 226 ARCEDN----CIRGFILE-KGMRGLSAPRIE-----GKFSLRASATGMIIMDSVEVPEEN-------VLPN---VSSLAG 285
Cdd:PLN02312 244 SQLHINgkneGVHAFIAQiRDQDGNICPNIRiadcgHKIGLNGVDNGRIWFDNLRIPRENllnsvadVSPDgkyVSAIKD 323
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 341940732 286 P---FGC----LNTARYGITWGVLGAAEFCLHTARQYALDRIQFGV 324
Cdd:PLN02312 324 PdqrFGAflapLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSV 369
|
|
| NcnH |
cd01159 |
Naphthocyclinone hydroxylase; Naphthocyclinone is an aromatic polyketide and an antibiotic, ... |
188-430 |
1.75e-05 |
|
Naphthocyclinone hydroxylase; Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Pssm-ID: 173848 [Multi-domain] Cd Length: 370 Bit Score: 46.57 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 188 PGGMETRArhnpsNQSYTLSGTKTWITNSPVADLFIVWARCEDNC----IRGFILEKgmrglSAPRIEGKFS---LRASA 260
Cdd:cd01159 109 PGGRAERV-----DGGYRVSGTWPFASGCDHADWILVGAIVEDDDggplPRAFVVPR-----AEYEIVDTWHvvgLRGTG 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 261 TGMIIMDSVEVPEENVLPNVSSLAGPFGCLNTARYGITWG----------VLGAAEFCLHTARQYALDRIQ---FGVPLA 327
Cdd:cd01159 179 SNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRqvfplsfaavSLGAAEGALAEFLELAGKRVRqygAAVKMA 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 328 RNQLVQKKLADMLTEITlglHACLQLGRLKDQ-------DKATPEMVSMLKRNNCGKALDIARQARDIL----GGNGISD 396
Cdd:cd01159 259 EAPITQLRLAEAAAELD---AARAFLERATRDlwahalaGGPIDVEERARIRRDAAYAAKLSAEAVDRLfhaaGGSALYT 335
|
250 260 270
....*....|....*....|....*....|....*....
gi 341940732 397 EYHVIR-----HAMNLEAVNTYEGThdihALILGRAITG 430
Cdd:cd01159 336 ASPLQRiwrdiHAAAQHAALNPETA----AEAYGRALLG 370
|
|
| PLN02876 |
PLN02876 |
acyl-CoA dehydrogenase |
116-403 |
2.28e-04 |
|
acyl-CoA dehydrogenase
Pssm-ID: 215473 [Multi-domain] Cd Length: 822 Bit Score: 43.63 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 116 AGVSSVAYGLLTRELERvdsgyrSMMSVQ-------SSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPN-HGSD 187
Cdd:PLN02876 492 AGLSNLEYGYLCEIMGR------SVWAPQvfncgapDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQvASSD 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 188 PGGMETRARHnpSNQSYTLSGTKTWITNS--PVADLFIVWARCEDNCI----RGFIL-EKGMRGLSAPRIEGKFSLRASA 260
Cdd:PLN02876 566 ATNIECSIRR--QGDSYVINGTKWWTSGAmdPRCRVLIVMGKTDFNAPkhkqQSMILvDIQTPGVQIKRPLLVFGFDDAP 643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341940732 261 TGM--IIMDSVEVPEENVLPNVS---SLAGpfGCLNTARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKK 335
Cdd:PLN02876 644 HGHaeISFENVRVPAKNILLGEGrgfEIAQ--GRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLIAQHGSFLSD 721
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 341940732 336 LADMLTEIT----LGLHACLQLGRLKDQD-KATPEMVSMLKRNNCGKALDIARQardILGGNGISDEYhVIRH 403
Cdd:PLN02876 722 LAKCRVELEqtrlLVLEAADQLDRLGNKKaRGIIAMAKVAAPNMALKVLDMAMQ---VHGAAGVSSDT-VLAH 790
|
|
| PTZ00460 |
PTZ00460 |
acyl-CoA dehydrogenase; Provisional |
142-212 |
1.62e-03 |
|
acyl-CoA dehydrogenase; Provisional
Pssm-ID: 185639 [Multi-domain] Cd Length: 646 Bit Score: 40.98 E-value: 1.62e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 341940732 142 SVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTL-----SGTKTW 212
Cdd:PTZ00460 96 TVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIhtpsvEAVKFW 171
|
|
| |
