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Conserved domains on  [gi|34391899|gb|AAP59883|]
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GLIS3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SFP1 super family cl25788
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
402-496 1.47e-05

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


The actual alignment was detected with superfamily member COG5189:

Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 48.18  E-value: 1.47e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34391899 402 MRVHSGEKPNKCTFEGCKKAFSRLENLKIHLRshtgekpylcqHPGCQKAFSNSSDRAKHQRTHLDTKPYACQIpgCTKR 481
Cdd:COG5189 341 MLKVKDGKPYKCPVEGCNKKYKNQNGLKYHML-----------HGHQNQKLHENPSPEKMNIFSAKDKPYRCEV--CDKR 407
                        90
                ....*....|....*
gi 34391899 482 YTDPSSLRKHVKaHS 496
Cdd:COG5189 408 YKNLNGLKYHRK-HS 421
PHA03247 super family cl33720
large tegument protein UL36; Provisional
456-705 4.65e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 4.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34391899   456 SDRAKHQRTHLDTKPYACQIPGCTKRYTDPSSLRKHVKAHS-SREQQARKKLRSSTE--LHPDLLTDCLAVQPLQPATSP 532
Cdd:PHA03247 2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRlGRAAQASSPPQRPRRraARPTVGSLTSLADPPPPPPTP 2708
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34391899   533 GDAADHTVGHSPGPGPGPGPGAELYSAPIFASNHSTRSGTAAGAGPPPHPVSHPSPGHNVQGSPHNPSSQLPPLTAVDAG 612
Cdd:PHA03247 2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34391899   613 AE----RFAPPTPSPHHISPGRVPAPPSLLQRAQAPHSQQPPGSLLKPYQPETNSSFQPNGIHVHGFYGqlqtfcpPHYP 688
Cdd:PHA03247 2789 ASlsesRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA-------PGGD 2861
                         250
                  ....*....|....*..
gi 34391899   689 DSQRtvPPSGSCSMVPS 705
Cdd:PHA03247 2862 VRRR--PPSRSPAAKPA 2876
 
Name Accession Description Interval E-value
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
402-496 1.47e-05

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 48.18  E-value: 1.47e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34391899 402 MRVHSGEKPNKCTFEGCKKAFSRLENLKIHLRshtgekpylcqHPGCQKAFSNSSDRAKHQRTHLDTKPYACQIpgCTKR 481
Cdd:COG5189 341 MLKVKDGKPYKCPVEGCNKKYKNQNGLKYHML-----------HGHQNQKLHENPSPEKMNIFSAKDKPYRCEV--CDKR 407
                        90
                ....*....|....*
gi 34391899 482 YTDPSSLRKHVKaHS 496
Cdd:COG5189 408 YKNLNGLKYHRK-HS 421
zf-H2C2_2 pfam13465
Zinc-finger double domain;
427-454 2.27e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.89  E-value: 2.27e-04
                          10        20
                  ....*....|....*....|....*...
gi 34391899   427 NLKIHLRSHTGEKPYLCqhPGCQKAFSN 454
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKC--PECGKSFKS 26
PHA03247 PHA03247
large tegument protein UL36; Provisional
456-705 4.65e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 4.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34391899   456 SDRAKHQRTHLDTKPYACQIPGCTKRYTDPSSLRKHVKAHS-SREQQARKKLRSSTE--LHPDLLTDCLAVQPLQPATSP 532
Cdd:PHA03247 2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRlGRAAQASSPPQRPRRraARPTVGSLTSLADPPPPPPTP 2708
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34391899   533 GDAADHTVGHSPGPGPGPGPGAELYSAPIFASNHSTRSGTAAGAGPPPHPVSHPSPGHNVQGSPHNPSSQLPPLTAVDAG 612
Cdd:PHA03247 2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34391899   613 AE----RFAPPTPSPHHISPGRVPAPPSLLQRAQAPHSQQPPGSLLKPYQPETNSSFQPNGIHVHGFYGqlqtfcpPHYP 688
Cdd:PHA03247 2789 ASlsesRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA-------PGGD 2861
                         250
                  ....*....|....*..
gi 34391899   689 DSQRtvPPSGSCSMVPS 705
Cdd:PHA03247 2862 VRRR--PPSRSPAAKPA 2876
 
Name Accession Description Interval E-value
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
402-496 1.47e-05

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 48.18  E-value: 1.47e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34391899 402 MRVHSGEKPNKCTFEGCKKAFSRLENLKIHLRshtgekpylcqHPGCQKAFSNSSDRAKHQRTHLDTKPYACQIpgCTKR 481
Cdd:COG5189 341 MLKVKDGKPYKCPVEGCNKKYKNQNGLKYHML-----------HGHQNQKLHENPSPEKMNIFSAKDKPYRCEV--CDKR 407
                        90
                ....*....|....*
gi 34391899 482 YTDPSSLRKHVKaHS 496
Cdd:COG5189 408 YKNLNGLKYHRK-HS 421
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
416-516 2.00e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 47.77  E-value: 2.00e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34391899 416 EGCKKAFSRLENLKIHLRSHTGEKPYLCQHPGCQKAFSNSSDRAKHQRTHLDTKPYACQIPGCTKRYTDPSSLRKHVKAH 495
Cdd:COG5048  37 PNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDLNSKSLPLSNSKASSSSLSSSSSN 116
                        90       100
                ....*....|....*....|.
gi 34391899 496 SSREQQARKKLRSSTELHPDL 516
Cdd:COG5048 117 SNDNNLLSSHSLPPSSRDPQL 137
zf-H2C2_2 pfam13465
Zinc-finger double domain;
427-454 2.27e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.89  E-value: 2.27e-04
                          10        20
                  ....*....|....*....|....*...
gi 34391899   427 NLKIHLRSHTGEKPYLCqhPGCQKAFSN 454
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKC--PECGKSFKS 26
PHA03247 PHA03247
large tegument protein UL36; Provisional
456-705 4.65e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 4.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34391899   456 SDRAKHQRTHLDTKPYACQIPGCTKRYTDPSSLRKHVKAHS-SREQQARKKLRSSTE--LHPDLLTDCLAVQPLQPATSP 532
Cdd:PHA03247 2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRlGRAAQASSPPQRPRRraARPTVGSLTSLADPPPPPPTP 2708
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34391899   533 GDAADHTVGHSPGPGPGPGPGAELYSAPIFASNHSTRSGTAAGAGPPPHPVSHPSPGHNVQGSPHNPSSQLPPLTAVDAG 612
Cdd:PHA03247 2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 34391899   613 AE----RFAPPTPSPHHISPGRVPAPPSLLQRAQAPHSQQPPGSLLKPYQPETNSSFQPNGIHVHGFYGqlqtfcpPHYP 688
Cdd:PHA03247 2789 ASlsesRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA-------PGGD 2861
                         250
                  ....*....|....*..
gi 34391899   689 DSQRtvPPSGSCSMVPS 705
Cdd:PHA03247 2862 VRRR--PPSRSPAAKPA 2876
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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