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Conserved domains on  [gi|344301561|gb|EGW31873|]
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hypothetical protein SPAPADRAFT_62483 [Spathaspora passalidarum NRRL Y-27907]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Utp12 super family cl23538
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. ...
 353-458 4.12e-05

Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2.


The actual alignment was detected with superfamily member pfam04003:

Pssm-ID: 461125  Cd Length: 106  Bit Score: 42.54  E-value: 4.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344301561  353 NKNSIVKLCSSINNEETIKQTIKALVFDQVsntsiEKLYSIISNEVSKDCSINKSLGIWLKWILLTYGGVIA--KSDQSN 430
Cdd:pfam04003   1 NDEYLLESVLEKIPPSDIELTLLRLPFSYV-----LRLLKFLAERLAERSPHLELLLRWLKFLLRTHGGYLVsnPDLRPV 75

                          90       100
                  ....*....|....*....|....*....
gi 344301561  431 LKNLQKELSSGLELLPHLIVIQ-GRLQLL 458
Cdd:pfam04003  76 LRSLQKLLRRRLKELKDLLGLNlGALDYL 104
 
Name Accession Description Interval E-value
Utp12 pfam04003
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. ...
 353-458 4.12e-05

Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2.


Pssm-ID: 461125  Cd Length: 106  Bit Score: 42.54  E-value: 4.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344301561  353 NKNSIVKLCSSINNEETIKQTIKALVFDQVsntsiEKLYSIISNEVSKDCSINKSLGIWLKWILLTYGGVIA--KSDQSN 430
Cdd:pfam04003   1 NDEYLLESVLEKIPPSDIELTLLRLPFSYV-----LRLLKFLAERLAERSPHLELLLRWLKFLLRTHGGYLVsnPDLRPV 75

                          90       100
                  ....*....|....*....|....*....
gi 344301561  431 LKNLQKELSSGLELLPHLIVIQ-GRLQLL 458
Cdd:pfam04003  76 LRSLQKLLRRRLKELKDLLGLNlGALDYL 104
 
Name Accession Description Interval E-value
Utp12 pfam04003
Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. ...
 353-458 4.12e-05

Dip2/Utp12 Family; This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2.


Pssm-ID: 461125  Cd Length: 106  Bit Score: 42.54  E-value: 4.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344301561  353 NKNSIVKLCSSINNEETIKQTIKALVFDQVsntsiEKLYSIISNEVSKDCSINKSLGIWLKWILLTYGGVIA--KSDQSN 430
Cdd:pfam04003   1 NDEYLLESVLEKIPPSDIELTLLRLPFSYV-----LRLLKFLAERLAERSPHLELLLRWLKFLLRTHGGYLVsnPDLRPV 75

                          90       100
                  ....*....|....*....|....*....
gi 344301561  431 LKNLQKELSSGLELLPHLIVIQ-GRLQLL 458
Cdd:pfam04003  76 LRSLQKLLRRRLKELKDLLGLNlGALDYL 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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