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Conserved domains on  [gi|344303371|gb|EGW33645|]
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hypothetical protein SPAPADRAFT_55482 [Spathaspora passalidarum NRRL Y-27907]

Protein Classification

ubiquitin carboxyl-terminal hydrolase family protein( domain architecture ID 10119250)

ubiquitin carboxyl-terminal hydrolase family protein is a C19 family peptidase that may deubiquitinate polyubiquitinated target proteins

CATH:  3.90.70.10
EC:  3.4.19.12
Gene Ontology:  GO:0016579|GO:0004843
MEROPS:  C19
PubMed:  7845226|11517925
SCOP:  4003158

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
278-544 1.63e-138

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 407.47  E-value: 1.63e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 278 LMYALKDIFESMIENKSTIGVVSPNYFIQKLKDRNYLFRqNNMHHDAHEFFNYLINEIIETLNREVG------------- 344
Cdd:cd02663   23 LLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFD-NYMHQDAHEFLNFLLNEIAEILDAERKaekanrklnnnnn 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 345 --PENNWCNNIFRGSITNETKCLSCETVSSRHEYFLDLSIDIPPgesAYSLSYSLNNFSKSETLTNQNKFYCNTCSSLQE 422
Cdd:cd02663  102 aePQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQ---NTSITSCLRQFSATETLCGRNKFYCDECCSLQE 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 423 AVKTIKLNKLPEVLVINFKRFKYDETVDKMVKLFDSISYPFKLKLFNTTDDDQEQ-HLYELYALVVHIGGGPMHGHYVSI 501
Cdd:cd02663  179 AEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDDAENPdRLYELVAVVVHIGGGPNHGHYVSI 258
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 344303371 502 CKTKYGlWLLFDDETVELVDDSYVMRFFGNGPGLASAYILFYS 544
Cdd:cd02663  259 VKSHGG-WLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
24-88 1.94e-07

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member pfam00443:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 310  Bit Score: 53.22  E-value: 1.94e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 344303371   24 FGMENFGNTCYCNSILQCLYYTENFRKNLVSHKFTKHEPKLKISGSKLHSFSNKYEQLLQKKLKE 88
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQKNSKSS 65
 
Name Accession Description Interval E-value
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
278-544 1.63e-138

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 407.47  E-value: 1.63e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 278 LMYALKDIFESMIENKSTIGVVSPNYFIQKLKDRNYLFRqNNMHHDAHEFFNYLINEIIETLNREVG------------- 344
Cdd:cd02663   23 LLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFD-NYMHQDAHEFLNFLLNEIAEILDAERKaekanrklnnnnn 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 345 --PENNWCNNIFRGSITNETKCLSCETVSSRHEYFLDLSIDIPPgesAYSLSYSLNNFSKSETLTNQNKFYCNTCSSLQE 422
Cdd:cd02663  102 aePQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQ---NTSITSCLRQFSATETLCGRNKFYCDECCSLQE 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 423 AVKTIKLNKLPEVLVINFKRFKYDETVDKMVKLFDSISYPFKLKLFNTTDDDQEQ-HLYELYALVVHIGGGPMHGHYVSI 501
Cdd:cd02663  179 AEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDDAENPdRLYELVAVVVHIGGGPNHGHYVSI 258
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 344303371 502 CKTKYGlWLLFDDETVELVDDSYVMRFFGNGPGLASAYILFYS 544
Cdd:cd02663  259 VKSHGG-WLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
260-543 3.23e-58

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 199.21  E-value: 3.23e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371  260 IINLDASLQIGEQHEDSILMYALKDIFESMIENKSTIGVvSPNYFIQKLKDRNYLFrQNNMHHDAHEFFNYLINEIIETL 339
Cdd:pfam00443  29 LLRISPLSEDSRYNKDINLLCALRDLFKALQKNSKSSSV-SPKMFKKSLGKLNPDF-SGYKQQDAQEFLLFLLDGLHEDL 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371  340 NREVGPEN-NWCNNIFRGSITNETKCLSCETVSSRHEYFLDLSIDIPPGESAYSLSYSLNN---FSKSETLTNQNKFYCN 415
Cdd:pfam00443 107 NGNHSTENeSLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICflqFSKLEELDDEEKYYCD 186
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371  416 TCSSLQEAVKTIKLNKLPEVLVINFKRFKYDetVDKMVKLFDSISYPFKLKLFNTTDDDQEQHL-----YELYALVVHIg 490
Cdd:pfam00443 187 KCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDLSRYLAEELKPKTnnlqdYRLVAVVVHS- 263
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 344303371  491 GGPMHGHYVSICK-TKYGLWLLFDDETVELVDDSYVMRffgngpgLASAYILFY 543
Cdd:pfam00443 264 GSLSSGHYIAYIKaYENNRWYKFDDEKVTEVDEETAVL-------SSSAYILFY 310
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
320-543 6.75e-23

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 104.57  E-value: 6.75e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371  320 MHHDAHEFfNYLINEIIETLNREVGPENNwCNNIFRGSITNETKCLSCETVSSRHEYFLDLSIDIppgESAYSLSYSLNN 399
Cdd:COG5077   272 MQHDIQEF-NRVLQDNLEKSMRGTVVENA-LNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNV---KGMKNLQESFRR 346
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371  400 FSKSETLTNQNKFYCNTcSSLQEAVKTIKLNKLPEVLVINFKRFKYDETVDKMVKLFDSISYP--FKLKLFNTTDDDQEQ 477
Cdd:COG5077   347 YIQVETLDGDNRYNAEK-HGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPleIDLLPFLDRDADKSE 425
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371  478 ---HLYELYALVVHigGGPMH-GHYVSICKT-KYGLWLLFDDETV------ELVDDSYVMRFFGNGPG--------LASA 538
Cdd:COG5077   426 nsdAVYVLYGVLVH--SGDLHeGHYYALLKPeKDGRWYKFDDTRVtratekEVLEENFGGDHPYKDKIrdhsgikrFMSA 503

                  ....*
gi 344303371  539 YILFY 543
Cdd:COG5077   504 YMLVY 508
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
24-88 1.94e-07

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 53.22  E-value: 1.94e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 344303371   24 FGMENFGNTCYCNSILQCLYYTENFRKNLVSHKFTKHEPKLKISGSKLHSFSNKYEQLLQKKLKE 88
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQKNSKSS 65
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
4-52 7.19e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 48.74  E-value: 7.19e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 344303371   4 PYPEPNPPVILPYGDGSYKIFGMENFGNTCYCNSILQCLYYTENFRKNL 52
Cdd:cd02671    5 PAPQPSSATSCEKRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGL 53
 
Name Accession Description Interval E-value
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
278-544 1.63e-138

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 407.47  E-value: 1.63e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 278 LMYALKDIFESMIENKSTIGVVSPNYFIQKLKDRNYLFRqNNMHHDAHEFFNYLINEIIETLNREVG------------- 344
Cdd:cd02663   23 LLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFD-NYMHQDAHEFLNFLLNEIAEILDAERKaekanrklnnnnn 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 345 --PENNWCNNIFRGSITNETKCLSCETVSSRHEYFLDLSIDIPPgesAYSLSYSLNNFSKSETLTNQNKFYCNTCSSLQE 422
Cdd:cd02663  102 aePQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQ---NTSITSCLRQFSATETLCGRNKFYCDECCSLQE 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 423 AVKTIKLNKLPEVLVINFKRFKYDETVDKMVKLFDSISYPFKLKLFNTTDDDQEQ-HLYELYALVVHIGGGPMHGHYVSI 501
Cdd:cd02663  179 AEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDDAENPdRLYELVAVVVHIGGGPNHGHYVSI 258
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 344303371 502 CKTKYGlWLLFDDETVELVDDSYVMRFFGNGPGLASAYILFYS 544
Cdd:cd02663  259 VKSHGG-WLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
319-543 4.04e-59

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 199.63  E-value: 4.04e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 319 NMHHDAHEFFNYLINEIIETLNREVG------PENNWCNNIFRGSITNETKCLSCETVSSRHEYFLDLSIDIP-PGESAY 391
Cdd:cd02257   20 SEQQDAHEFLLFLLDKLHEELKKSSKrtsdssSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPvKGLPQV 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 392 SLSYSLNNFSKSETLTNQNKFYCNtCSSLQEAVKTIKLNKLPEVLVINFKRFKYDETvDKMVKLFDSISYPFKLKLFNTT 471
Cdd:cd02257  100 SLEDCLEKFFKEEILEGDNCYKCE-KKKKQEATKRLKIKKLPPVLIIHLKRFSFNED-GTKEKLNTKVSFPLELDLSPYL 177
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 472 -------DDDQEQHLYELYALVVHIGGGPMHGHYVSICKTKY-GLWLLFDDETVELVDDSYVMRFFGNgpgLASAYILFY 543
Cdd:cd02257  178 segekdsDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSdGKWYKFNDDKVTEVSEEEVLEFGSL---SSSAYILFY 254
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
260-543 3.23e-58

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 199.21  E-value: 3.23e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371  260 IINLDASLQIGEQHEDSILMYALKDIFESMIENKSTIGVvSPNYFIQKLKDRNYLFrQNNMHHDAHEFFNYLINEIIETL 339
Cdd:pfam00443  29 LLRISPLSEDSRYNKDINLLCALRDLFKALQKNSKSSSV-SPKMFKKSLGKLNPDF-SGYKQQDAQEFLLFLLDGLHEDL 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371  340 NREVGPEN-NWCNNIFRGSITNETKCLSCETVSSRHEYFLDLSIDIPPGESAYSLSYSLNN---FSKSETLTNQNKFYCN 415
Cdd:pfam00443 107 NGNHSTENeSLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLQICflqFSKLEELDDEEKYYCD 186
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371  416 TCSSLQEAVKTIKLNKLPEVLVINFKRFKYDetVDKMVKLFDSISYPFKLKLFNTTDDDQEQHL-----YELYALVVHIg 490
Cdd:pfam00443 187 KCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLELDLSRYLAEELKPKTnnlqdYRLVAVVVHS- 263
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 344303371  491 GGPMHGHYVSICK-TKYGLWLLFDDETVELVDDSYVMRffgngpgLASAYILFY 543
Cdd:pfam00443 264 GSLSSGHYIAYIKaYENNRWYKFDDEKVTEVDEETAVL-------SSSAYILFY 310
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
319-544 1.14e-42

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 153.98  E-value: 1.14e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 319 NMHHDAHEFFNYLINE---IIetlnrevgpennwcNNIFRGSITNETKCLSCETVSSRHEYFLDLSIDIPPG---ESAYS 392
Cdd:cd02674   20 ADQQDAQEFLLFLLDGlhsII--------------VDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGsgdAPKVT 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 393 LSYSLNNFSKSETLTNQNKFYCNTCSSLQEAVKTIKLNKLPEVLVINFKRFKYDETvdKMVKLFDSISYPFK---LKLFN 469
Cdd:cd02674   86 LEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRG--STRKLTTPVTFPLNdldLTPYV 163
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 344303371 470 TTDDDQEQHLYELYALVVHIGGGpMHGHYVSICKTKY-GLWLLFDDETVELVDDSYVmrffgngpGLASAYILFYS 544
Cdd:cd02674  164 DTRSFTGPFKYDLYAVVNHYGSL-NGGHYTAYCKNNEtNDWYKFDDSRVTKVSESSV--------VSSSAYILFYE 230
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
272-544 1.60e-41

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 153.20  E-value: 1.60e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 272 QHEDSILMYALKDIFESMIENKSTIGVvsPNYFIQKLKDRNYLFRQNNMHhDAHEFFNYLINEIIETLNREVGP------ 345
Cdd:cd02661   40 CNEGFCMMCALEAHVERALASSGPGSA--PRIFSSNLKQISKHFRIGRQE-DAHEFLRYLLDAMQKACLDRFKKlkavdp 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 346 ---ENNWCNNIFRGSITNETKCLSCETVSSRHEYFLDLSIDIppgESAYSLSYSLNNFSKSETLTNQNKFYCNTCSSLQE 422
Cdd:cd02661  117 ssqETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDI---KGADSLEDALEQFTKPEQLDGENKYKCERCKKKVK 193
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 423 AVKTIKLNKLPEVLVINFKRFKYDetvdKMVKLFDSISYPFKLKLFNTTDDDQEQHL-YELYALVVHIGGGPMHGHYVSI 501
Cdd:cd02661  194 ASKQLTIHRAPNVLTIHLKRFSNF----RGGKINKQISFPETLDLSPYMSQPNDGPLkYKLYAVLVHSGFSPHSGHYYCY 269
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 344303371 502 CKTKYGLWLLFDDETVELVDDSYVMRffgngpglASAYILFYS 544
Cdd:cd02661  270 VKSSNGKWYNMDDSKVSPVSIETVLS--------QKAYILFYI 304
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
320-546 1.11e-39

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 148.94  E-value: 1.11e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 320 MHHDAHEFFNYLINEIIETLNREVGPenNWCNNIFRGSITNETKCLSCETVSSRHEYFLDLSIDIPPGESaysLSYSLNN 399
Cdd:cd02659   85 EQHDVQEFFRVLFDKLEEKLKGTGQE--GLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKGKKN---LEESLDA 159
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 400 FSKSETLTNQNKFYCNTCSSLQEAVKTIKLNKLPEVLVINFKRFKYDETVDKMVKLFDSISYPFKLKL------------ 467
Cdd:cd02659  160 YVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMepytekglakke 239
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 468 FNTTDDDQEQHLYELYALVVHIGGGpmH-GHYVSICKTK-YGLWLLFDDETVELVD------------DSYVMRFFGN-- 531
Cdd:cd02659  240 GDSEKKDSESYIYELHGVLVHSGDA--HgGHYYSYIKDRdDGKWYKFNDDVVTPFDpndaeeecfggeETQKTYDSGPra 317
                        250
                 ....*....|....*
gi 344303371 532 GPGLASAYILFYSKC 546
Cdd:cd02659  318 FKRTTNAYMLFYERK 332
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
322-543 1.57e-35

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 137.12  E-value: 1.57e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 322 HDAHEFFNYLINEIIETLNREVGPENNW--CN----NIFRGSITNETKCLSCETVSSRHEYFLDLSIDIPP--------- 386
Cdd:cd02660   89 QDAHEFFQFLLDQLHTHYGGDKNEANDEshCNciihQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNkstpswalg 168
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 387 ---GESAYSLSYSLNNFSKSETLTNQNkFYCNTCSSLQEAVKTIKLNKLPEVLVINFKRFKYDETvDKMVKLFDSISYPF 463
Cdd:cd02660  169 esgVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLN-KTSRKIDTYVQFPL 246
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 464 KLKL-------FNTTDDDQE---QHLYELYALVVHIGGGPmHGHYVSICKTKYGLWLLFDDETVELVDDSYVMRffgngp 533
Cdd:cd02660  247 ELNMtpytsssIGDTQDSNSldpDYTYDLFAVVVHKGTLD-TGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLK------ 319
                        250
                 ....*....|
gi 344303371 534 glASAYILFY 543
Cdd:cd02660  320 --SQAYLLFY 327
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
248-518 7.09e-35

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 134.86  E-value: 7.09e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 248 DQRKRSALINGPIINLDASLQIGEQHEDSILMYALKDIFESMIENKstIGVVSPNYFIQKLKdrnylfRQNNMHHDAHEF 327
Cdd:cd02668   23 EFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGN--RSVVDPSGFVKALG------LDTGQQQDAQEF 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 328 FNYLINEIIETLNREVGPE-NNWCNNIFRGSITNETKCLSCETVSSRHEYFLDLSIDIPPGESaysLSYSLNNFSKSETL 406
Cdd:cd02668   95 SKLFLSLLEAKLSKSKNPDlKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKGHKT---LEECIDEFLKEEQL 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 407 TNQNKFYCNTCSSLQEAVKTIKLNKLPEVLVINFKRFKYDETVDKMVKLFDSISYPFKLKLFNTTDDDQEQ-HLYELYAL 485
Cdd:cd02668  172 TGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAESDEGsYVYELSGV 251
                        250       260       270
                 ....*....|....*....|....*....|....
gi 344303371 486 VVHIGGGPMHGHYV-SICKTKYGLWLLFDDETVE 518
Cdd:cd02668  252 LIHQGVSAYSGHYIaHIKDEQTGEWYKFNDEDVE 285
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
322-543 2.00e-34

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 132.51  E-value: 2.00e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 322 HDAHEFFNYLINEIIETLNRevgpennwcnnIFRGSITNETKCLSCETVSSRHEYFLDLSIDI-PPGESAYSLSYSLNNF 400
Cdd:cd02667   52 QDSHELLRYLLDGLRTFIDS-----------IFGGELTSTIMCESCGTVSLVYEPFLDLSLPRsDEIKSECSIESCLKQF 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 401 SKSETLTNQNKFYCNTCsslQEAVKTIKLNKLPEVLVINFKRFKYDETVDkMVKLFDSISYPFKLKL--FNTT----DDD 474
Cdd:cd02667  121 TEVEILEGNNKFACENC---TKAKKQYLISKLPPVLVIHLKRFQQPRSAN-LRKVSRHVSFPEILDLapFCDPkcnsSED 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 475 QEQHLYELYALVVHIGGgpMH-GHYVSICKTKY----------------------GLWLLFDDETVELVDDSYVMRffgn 531
Cdd:cd02667  197 KSSVLYRLYGVVEHSGT--MRsGHYVAYVKVRPpqqrlsdltkskpaadeagpgsGQWYYISDSDVREVSLEEVLK---- 270
                        250
                 ....*....|..
gi 344303371 532 gpglASAYILFY 543
Cdd:cd02667  271 ----SEAYLLFY 278
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
282-543 2.13e-33

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 131.17  E-value: 2.13e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 282 LKDIFESMIEN-KSTIGVVSPNYFIQKLKDRNYLFrQNNMHHDAHEFFNYLINEIietlnrevgpeNNWCNNIFRGSITN 360
Cdd:cd02671   66 LQSSFLLNPEKyNDELANQAPRRLLNALREVNPMY-EGYLQHDAQEVLQCILGNI-----------QELVEKDFQGQLVL 133
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 361 ETKCLSCETVSSRHEYFLDLSIDIPPGESAYS----------------LSYSLNNFSKSETLTNQNKFYCNTCSSLQEAV 424
Cdd:cd02671  134 RTRCLECETFTERREDFQDISVPVQESELSKSeesseispdpktemktLKWAISQFASVERIVGEDKYFCENCHHYTEAE 213
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 425 KTIKLNKLPEVLVINFKRFKYDETVDK----MVKLFDSISYPFKLKLFNTTdDDQEQHLYELYALVVHIGGGPMHGHYvs 500
Cdd:cd02671  214 RSLLFDKLPEVITIHLKCFAANGSEFDcyggLSKVNTPLLTPLKLSLEEWS-TKPKNDVYRLFAVVMHSGATISSGHY-- 290
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 344303371 501 ickTKYGLWLLFDDETVELVDDSYVMRFFG-NGPGLASAYILFY 543
Cdd:cd02671  291 ---TAYVRWLLFDDSEVKVTEEKDFLEALSpNTSSTSTPYLLFY 331
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
322-543 8.27e-25

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 106.04  E-value: 8.27e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 322 HDAHEFFNYLINEIIETLNRevgpennwcnnIFRGSITNETKCLSCETVSSRHEYFLDLSIDIPpgesaySLSYSLNNFS 401
Cdd:cd02664   82 QDCSEYLRYLLDRLHTLIEK-----------MFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP------SVQDLLNYFL 144
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 402 KSETLTNQNKFYCNTCSSLQEAVKTIKLNKLPEVLVINFKRFKYDETVDKMVKLFDSISYPFKLKL-------------- 467
Cdd:cd02664  145 SPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLpvrveskssesple 224
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 468 ----FNTTDDDQ--EQHLYELYALVVHIGGGPMHGHYVSI---------------------CKTKYGLWLLFDDETVELV 520
Cdd:cd02664  225 kkeeESGDDGELvtRQVHYRLYAVVVHSGYSSESGHYFTYardqtdadstgqecpepkdaeENDESKNWYLFNDSRVTFS 304
                        250       260
                 ....*....|....*....|...
gi 344303371 521 DDSYVMRFFGNGPGlASAYILFY 543
Cdd:cd02664  305 SFESVQNVTSRFPK-DTPYILFY 326
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
320-543 6.75e-23

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 104.57  E-value: 6.75e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371  320 MHHDAHEFfNYLINEIIETLNREVGPENNwCNNIFRGSITNETKCLSCETVSSRHEYFLDLSIDIppgESAYSLSYSLNN 399
Cdd:COG5077   272 MQHDIQEF-NRVLQDNLEKSMRGTVVENA-LNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNV---KGMKNLQESFRR 346
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371  400 FSKSETLTNQNKFYCNTcSSLQEAVKTIKLNKLPEVLVINFKRFKYDETVDKMVKLFDSISYP--FKLKLFNTTDDDQEQ 477
Cdd:COG5077   347 YIQVETLDGDNRYNAEK-HGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPleIDLLPFLDRDADKSE 425
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371  478 ---HLYELYALVVHigGGPMH-GHYVSICKT-KYGLWLLFDDETV------ELVDDSYVMRFFGNGPG--------LASA 538
Cdd:COG5077   426 nsdAVYVLYGVLVH--SGDLHeGHYYALLKPeKDGRWYKFDDTRVtratekEVLEENFGGDHPYKDKIrdhsgikrFMSA 503

                  ....*
gi 344303371  539 YILFY 543
Cdd:COG5077   504 YMLVY 508
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
323-543 6.95e-23

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 99.70  E-value: 6.95e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 323 DAHEFFNYLINEIIETLNREVGPEnnwCNNIFRGSITNETKCLSCETV--SSRHEYFLDLSI------DIPPGESAY--- 391
Cdd:cd02658  102 DALEFLLHLIDKLDRESFKNLGLN---PNDLFKFMIEDRLECLSCKKVkyTSELSEILSLPVpkdeatEKEEGELVYepv 178
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 392 SLSYSLNNFSKSETLtnqnKFYCNTCSSLQEAVKTIKLNKLPEVLVINFKRFKYDETVDkmvklfdsisyPFKLKLFNTT 471
Cdd:cd02658  179 PLEDCLKAYFAPETI----EDFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWV-----------PKKLDVPIDV 243
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 344303371 472 DDDQEQHLYELYALVVHIGGGPMHGHYVSICKTK---YGLWLLFDDETVELVDDSYVMrfFGNGpglasaYILFY 543
Cdd:cd02658  244 PEELGPGKYELIAFISHKGTSVHSGHYVAHIKKEidgEGKWVLFNDEKVVASQDPPEM--KKLG------YIYFY 310
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
262-543 2.57e-18

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 86.23  E-value: 2.57e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 262 NLDASLQIGEQHEDSILMyALKDIFESMienKSTIGVVSPNYFIQKLKDRNYLF--RQNN---MHHDAHEFFNylinEII 336
Cdd:cd02657   30 NYNPARRGANQSSDNLTN-ALRDLFDTM---DKKQEPVPPIEFLQLLRMAFPQFaeKQNQggyAQQDAEECWS----QLL 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 337 ETLNREV---GPENNWCNNIFRGSITNETKCL---SCETVSSRHEYFLDLSIDIPpgESAYSLSYSLNNFSKSETLTNQN 410
Cdd:cd02657  102 SVLSQKLpgaGSKGSFIDQLFGIELETKMKCTespDEEEVSTESEYKLQCHISIT--TEVNYLQDGLKKGLEEEIEKHSP 179
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 411 KFYCNTcsslqEAVKTIKLNKLPEVLVINFKRFKYDETVDKMVKLFDSISYPFKLKLF----NTTdddqeqhLYELYALV 486
Cdd:cd02657  180 TLGRDA-----IYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYelctPSG-------YYELVAVI 247
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 344303371 487 VHIGGGPMHGHYVSICKTK-YGLWLLFDDETVELVDDSYVMRFFGNGPGlASAYILFY 543
Cdd:cd02657  248 THQGRSADSGHYVAWVRRKnDGKWIKFDDDKVSEVTEEDILKLSGGGDW-HIAYILLY 304
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
392-547 5.45e-17

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 85.32  E-value: 5.45e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 392 SLSYSLNNFSKSETLTNQNKFYCNTCSSLQEAVKTIKLNKLPEVLVINFKRFKYDETVDKmvKLFDSISYP---FKLKLF 468
Cdd:COG5560  676 TLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRD--KIDDLVEYPiddLDLSGV 753
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 469 NTTDDDqEQHLYELYALVVHIGGGPmHGHYVSICKTKY-GLWLLFDDETVELVDDSYVMRffgngpglASAYILFYSKCH 547
Cdd:COG5560  754 EYMVDD-PRLIYDLYAVDNHYGGLS-GGHYTAYARNFAnNGWYLFDDSRITEVDPEDSVT--------SSAYVLFYRRKS 823
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
322-543 6.58e-17

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 80.49  E-value: 6.58e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 322 HDAHEFFNYLineiIETLNREVGpennwcnNIFRGSITNETKCLSCETVSS-RHEYFLDLSIDIPP--GESAYSLSYSLN 398
Cdd:cd02662   35 QDAHELFQVL----LETLEQLLK-------FPFDGLLASRIVCLQCGESSKvRYESFTMLSLPVPNqsSGSGTTLEHCLD 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 399 NFSKSETLTNqnkFYCNTCSslqeavktIKLNKLPEVLVINFKRFKYDETVDkMVKLFDSISYPFKLKlfnttdddqeQH 478
Cdd:cd02662  104 DFLSTEIIDD---YKCDRCQ--------TVIVRLPQILCIHLSRSVFDGRGT-STKNSCKVSFPERLP----------KV 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 479 LYELYALVVHIGGgpmH--GHYVSI----------------------CKTKYGlWLLFDDETVELVDDSYVMRffgngpg 534
Cdd:cd02662  162 LYRLRAVVVHYGS---HssGHYVCYrrkplfskdkepgsfvrmregpSSTSHP-WWRISDTTVKEVSESEVLE------- 230

                 ....*....
gi 344303371 535 LASAYILFY 543
Cdd:cd02662  231 QKSAYMLFY 239
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
327-514 8.29e-14

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 72.69  E-value: 8.29e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371  327 FFNYLINEIIETLNR---EVGPENNWCNNIFRGSITNETKCLSCETVSSRHEYFLDLSIDIPPGESAYSLSYSLNNFS-- 401
Cdd:pfam13423 102 FNRFLLDQLSSEENStppNPSPAESPLEQLFGIDAETTIRCSNCGHESVRESSTHVLDLIYPRKPSSNNKKPPNQTFSsi 181
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371  402 --KSETLTNQNKFYCNTCSSLQ--EAVKTIKlnKLPEVLVINFKRFKYDETVDKmvKLFDSISYPFKLKLFNTTDDDQEQ 477
Cdd:pfam13423 182 lkSSLERETTTKAWCEKCKRYQplESRRTVR--NLPPVLSLNAALTNEEWRQLW--KTPGWLPPEIGLTLSDDLQGDNEI 257
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 344303371  478 HLYELYALVVHIGGGPMHGHYVSICK--------TKYGLWLLFDD 514
Cdd:pfam13423 258 VKYELRGVVVHIGDSGTSGHLVSFVKvadseledPTESQWYLFND 302
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
318-543 1.11e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 68.32  E-value: 1.11e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 318 NNMHHDAHEFFNYL---INEIIETLNREVGPENNWCN-----NIFRGSITNETKCLSC--ETVSSRHEYFLDLSIDIPPG 387
Cdd:cd02673   30 NDDQQDAHEFLLTLleaIDDIMQVNRTNVPPSNIEIKrlnplEAFKYTIESSYVCIGCsfEENVSDVGNFLDVSMIDNKL 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 388 ESAYSLSYSLNNFSKSETLtnqnkfyCNTCSSlQEAVKTIKLNKLPEVLVINFKRFKYDETVDKMVKLFDSISYPFKLKL 467
Cdd:cd02673  110 DIDELLISNFKTWSPIEKD-------CSSCKC-ESAISSERIMTFPECLSINLKRYKLRIATSDYLKKNEEIMKKYCGTD 181
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 344303371 468 FNttdddqeqhlYELYALVVHIGGGPMHGHYVSICKTKYG--LWLLFDDETVELVDDSYVMRffgngPGLASAYILFY 543
Cdd:cd02673  182 AK----------YSLVAVICHLGESPYDGHYIAYTKELYNgsSWLYCSDDEIRPVSKNDVST-----NARSSGYLIFY 244
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
297-518 3.51e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 59.64  E-value: 3.51e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 297 GVVSPNYFIQKLKDRNYLFRQNNMHHDAHEFFNYLINEIIETLNREVGPENNWCNNIFRGSITNETKCLSCETVSSRHEY 376
Cdd:cd02669  183 GHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKD 262
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 377 ---------------FLDLSIDIPPgESAYSLSYSLNNFSKSETLTNQNKFYCNTCSSLQEAVKTIKLNKLPEVLVINFK 441
Cdd:cd02669  263 kffkdsrvkktsvspFLLLTLDLPP-PPLFKDGNEENIIPQVPLKQLLKKYDGKTETELKDSLKRYLISRLPKYLIFHIK 341
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 442 RF-KYDETVDK-------MVKLFDSISYpfklklfnTTDDDQEQHLYELYALV---VHIGGGPMHGHY-VSICKTKYGLW 509
Cdd:cd02669  342 RFsKNNFFKEKnptivnfPIKNLDLSDY--------VHFDKPSLNLSTKYNLVaniVHEGTPQEDGTWrVQLRHKSTNKW 413

                 ....*....
gi 344303371 510 LLFDDETVE 518
Cdd:cd02669  414 FEIQDLNVK 422
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
263-545 5.11e-09

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 57.89  E-value: 5.11e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 263 LDASLQIGEQHEDSILMYALKDIFESmienKSTIGVVSPNYFIQKLKDRNYLFRQ------------NNM--HHDAHEFF 328
Cdd:COG5533   11 MNSVLQILALYLPKLDELLDDLSKEL----KVLKNVIRKPEPDLNQEEALKLFTAlwsskehkvgwiPPMgsQEDAHELL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 329 NYLINEIietlnrevGPENNWCNNIFRGSITNETKClscETVSSRHEYfldlsIDIPPGESAYSLSYSLNNFSksETLTN 408
Cdd:COG5533   87 GKLLDEL--------KLDLVNSFTIRIFKTTKDKKK---TSTGDWFDI-----IIELPDQTWVNNLKTLQEFI--DNMEE 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 409 QNKFYCNTCSSLQEAVKTIKLN-------KLPEVLVINFKRFKYDETvdkMVKLFDSISYPFKLKL-FNTTDDDQEQHLY 480
Cdd:COG5533  149 LVDDETGVKAKENEELEVQAKQeyevsfvKLPKILTIQLKRFANLGG---NQKIDTEVDEKFELPVkHDQILNIVKETYY 225
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 344303371 481 ELYALVVHiGGGPMHGHYVSICKTKyGLWLLFDDETVELVDDSYVMRffgngPGLASAYILFYSK 545
Cdd:COG5533  226 DLVGFVLH-QGSLEGGHYIAYVKKG-GKWEKANDSDVTPVSEEEAIN-----EKAKNAYLYFYER 283
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
24-88 1.94e-07

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 53.22  E-value: 1.94e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 344303371   24 FGMENFGNTCYCNSILQCLYYTENFRKNLVSHKFTKHEPKLKISGSKLHSFSNKYEQLLQKKLKE 88
Cdd:pfam00443   1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDINLLCALRDLFKALQKNSKSS 65
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
4-52 7.19e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 48.74  E-value: 7.19e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 344303371   4 PYPEPNPPVILPYGDGSYKIFGMENFGNTCYCNSILQCLYYTENFRKNL 52
Cdd:cd02671    5 PAPQPSSATSCEKRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGL 53
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
25-44 1.74e-05

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 46.71  E-value: 1.74e-05
                         10        20
                 ....*....|....*....|
gi 344303371  25 GMENFGNTCYCNSILQCLYY 44
Cdd:cd02257    1 GLNNLGNTCYLNSVLQALFS 20
Peptidase_C19P cd02672
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
366-543 2.42e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239137 [Multi-domain]  Cd Length: 268  Bit Score: 46.74  E-value: 2.42e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 366 SCETVSSRHEYFLDLSIDIPpGESAYSLSYSLNNFSKSETLTNQNKFYCNTCSSLQEAVKTIKLNKLP----EVLVINFK 441
Cdd:cd02672   90 SCGTSRNSVSLLYTLSLPLG-STKTSKESTFLQLLKRSLDLEKVTKAWCDTCCKYQPLEQTTSIRHLPdillLVLVINLS 168
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 442 RFKYDETvDKMVKLFDSIS----YPFKLKLFNTTDDDQEQHL---YELYALVVHIGGGPMHGHYVSI-----CKTKYGLW 509
Cdd:cd02672  169 VTNGEFD-DINVVLPSGKVmqnkVSPKAIDHDKLVKNRGQESiykYELVGYVCEINDSSRGQHNVVFvikvnEESTHGRW 247
                        170       180       190
                 ....*....|....*....|....*....|....
gi 344303371 510 LLFDDETVELVDDsyvmrffgngpglaSAYILFY 543
Cdd:cd02672  248 YLFNDFLVTPVSE--------------LAYILLY 267
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
25-55 3.68e-05

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 46.11  E-value: 3.68e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 344303371   25 GMENFGNTCYCNSILQCLYYTENFRKNLVSH 55
Cdd:pfam13423   2 GLETHIPNSYTNSLLQLLRFIPPLRNLALSH 32
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
25-42 4.95e-04

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 42.27  E-value: 4.95e-04
                         10
                 ....*....|....*...
gi 344303371  25 GMENFGNTCYCNSILQCL 42
Cdd:cd02674    1 GLRNLGNTCYMNSILQCL 18
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
25-54 7.43e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 42.09  E-value: 7.43e-04
                         10        20        30
                 ....*....|....*....|....*....|
gi 344303371  25 GMENFGNTCYCNSILQCLYYTENFRKNLVS 54
Cdd:cd02664    1 GLINLGNTCYMNSVLQALFMAKDFRRQVLS 30
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
431-543 7.92e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 41.39  E-value: 7.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 431 KLPEVLVINFKRFKYDETVDKmvKLFDSISYPFKLKlfnttdddqeQHLYELYALVVHIGGGPmHGHY-VSICKTKYGLW 509
Cdd:cd02665  127 ELPPVLTFELSRFEFNQGRPE--KIHDKLEFPQIIQ----------QVPYELHAVLVHEGQAN-AGHYwAYIYKQSRQEW 193
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 344303371 510 LLFDDETVELVDDSYVMR-FFGNGPGlASAYILFY 543
Cdd:cd02665  194 EKYNDISVTESSWEEVERdSFGGGRN-PSAYCLMY 227
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
471-543 3.17e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 40.17  E-value: 3.17e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 344303371 471 TDDDQEQHLYELYALVVHiGGGPMHGHY-VSICKTKYGLWLLFDDETVELVDDSYVMRFF-GNGpglASAYILFY 543
Cdd:cd02666  272 QFDDLKSYGYRLHAVFIH-RGEASSGHYwVYIKDFEENVWRKYNDETVTVVPASEVFLFTlGNT---ATPYFLVY 342
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
429-543 5.07e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 39.05  E-value: 5.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 344303371 429 LNKLPEVLVINFKRFKYDETVDKmvKLFDSISYPFKLKLFNTTDDDQEQHLYELY-----------------------AL 485
Cdd:cd02670   95 FAKAPSCLIICLKRYGKTEGKAQ--KMFKKILIPDEIDIPDFVADDPRACSKCQLecrvcyddkdfsptcgkfklslcSA 172
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 344303371 486 VVHIGGGPMHGHYVSICKT-KYGL-----------WLLFDD---ETVELVDDSYVMRFFgngpgLASAYILFY 543
Cdd:cd02670  173 VCHRGTSLETGHYVAFVRYgSYSLtetdneaynaqWVFFDDmadRDGVSNGFNIPAARL-----LEDPYMLFY 240
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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