|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-283 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 617.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVI 80
Cdd:MTH00131 39 LCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVV 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 81 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 160
Cdd:MTH00131 119 LLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLL 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 161 FLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00131 199 FLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 278
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 399569363 241 AILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 283
Cdd:MTH00131 279 AILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLT 321
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-282 |
8.74e-114 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 332.91 E-value: 8.74e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYlqKE----TWN 76
Cdd:COG1290 48 YSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWI 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 77 IGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFH-FLLPFVIAGAS 155
Cdd:COG1290 126 IGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALV 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 156 MIHLLFLHQTGSNNPTG----LNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNllGDPDNFTPANPLVTPPHIK 231
Cdd:COG1290 206 VLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQ 283
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 399569363 232 PEWYFLFAYAILRSIP--NKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPL 282
Cdd:COG1290 284 PDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPV 336
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-168 |
9.68e-84 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 249.59 E-value: 9.68e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSY--LQKETWNIG 78
Cdd:cd00284 31 TCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIG 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 79 VILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIH 158
Cdd:cd00284 111 VILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILH 190
|
170
....*....|
gi 399569363 159 LLFLHQTGSN 168
Cdd:cd00284 191 LLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-166 |
5.37e-79 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 237.28 E-value: 5.37e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYG--SYLQKETWNIG 78
Cdd:pfam00033 22 LCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 79 VILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIH 158
Cdd:pfam00033 102 VILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLH 181
|
....*...
gi 399569363 159 LLFLHQTG 166
Cdd:pfam00033 182 LLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
191-280 |
8.55e-12 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 62.12 E-value: 8.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 191 LLGFILMLVGLtsvALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPMLH 270
Cdd:TIGR01156 44 ILGTIACVVGL---AVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115
|
90
....*....|
gi 399569363 271 TSKQRGNTFR 280
Cdd:TIGR01156 116 NVNKFQNPFR 125
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-283 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 617.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVI 80
Cdd:MTH00131 39 LCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVV 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 81 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 160
Cdd:MTH00131 119 LLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLL 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 161 FLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00131 199 FLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 278
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 399569363 241 AILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 283
Cdd:MTH00131 279 AILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLT 321
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-283 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 578.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVI 80
Cdd:MTH00119 40 LCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVI 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 81 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 160
Cdd:MTH00119 120 LLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLL 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 161 FLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00119 200 FLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAY 279
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 399569363 241 AILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 283
Cdd:MTH00119 280 AILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLS 322
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-283 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 573.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVI 80
Cdd:MTH00074 40 VCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVI 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 81 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 160
Cdd:MTH00074 120 LLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLL 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 161 FLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00074 200 FLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAY 279
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 399569363 241 AILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 283
Cdd:MTH00074 280 AILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLT 322
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-283 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 555.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVI 80
Cdd:MTH00191 36 LCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVI 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 81 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 160
Cdd:MTH00191 116 LLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLL 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 161 FLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00191 196 FLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAY 275
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 399569363 241 AILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 283
Cdd:MTH00191 276 AILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLT 318
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-283 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 552.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVI 80
Cdd:MTH00100 39 ICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGII 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 81 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 160
Cdd:MTH00100 119 LLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLL 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 161 FLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00100 199 FLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAY 278
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 399569363 241 AILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 283
Cdd:MTH00100 279 AILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLS 321
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-283 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 540.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVI 80
Cdd:MTH00156 29 LCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 81 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 160
Cdd:MTH00156 109 ILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 161 FLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00156 189 FLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAY 268
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 399569363 241 AILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 283
Cdd:MTH00156 269 AILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPIN 311
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-283 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 512.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVI 80
Cdd:MTH00034 39 LCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVI 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 81 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 160
Cdd:MTH00034 119 LFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLL 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 161 FLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00034 199 FLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAY 278
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 399569363 241 AILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 283
Cdd:MTH00034 279 AILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLS 321
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-282 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 510.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVI 80
Cdd:MTH00145 40 LCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVT 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 81 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 160
Cdd:MTH00145 120 LLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLL 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 161 FLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00145 200 FLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAY 279
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 399569363 241 AILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPL 282
Cdd:MTH00145 280 AILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-283 |
1.94e-173 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 483.80 E-value: 1.94e-173
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVI 80
Cdd:MTH00016 40 LCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVI 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 81 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 160
Cdd:MTH00016 120 LLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLL 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 161 FLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00016 200 FLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAY 279
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 399569363 241 AILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 283
Cdd:MTH00016 280 AILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLN 322
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-282 |
8.09e-151 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 426.81 E-value: 8.09e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVI 80
Cdd:MTH00022 38 LCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVV 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 81 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 160
Cdd:MTH00022 118 IFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLI 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 161 FLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00022 198 YLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAY 277
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 399569363 241 AILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPL 282
Cdd:MTH00022 278 AILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPL 319
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-283 |
2.16e-148 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 420.48 E-value: 2.16e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVI 80
Cdd:MTH00224 40 LCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVI 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 81 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 160
Cdd:MTH00224 120 LFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIM 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 161 FLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00224 200 FLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMY 279
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 399569363 241 AILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 283
Cdd:MTH00224 280 AILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLN 322
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-283 |
4.77e-147 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 417.18 E-value: 4.77e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVI 80
Cdd:MTH00053 40 FCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 81 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 160
Cdd:MTH00053 120 IFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLI 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 161 FLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAY 240
Cdd:MTH00053 200 ALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAY 279
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 399569363 241 AILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 283
Cdd:MTH00053 280 AILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLS 322
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-282 |
8.74e-114 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 332.91 E-value: 8.74e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYlqKE----TWN 76
Cdd:COG1290 48 YSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWI 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 77 IGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFH-FLLPFVIAGAS 155
Cdd:COG1290 126 IGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALV 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 156 MIHLLFLHQTGSNNPTG----LNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNllGDPDNFTPANPLVTPPHIK 231
Cdd:COG1290 206 VLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQ 283
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 399569363 232 PEWYFLFAYAILRSIP--NKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPL 282
Cdd:COG1290 284 PDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPV 336
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-283 |
3.11e-113 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 331.52 E-value: 3.11e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVI 80
Cdd:MTH00033 36 LCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 81 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 160
Cdd:MTH00033 116 IFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLL 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 161 FLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFS--PNLLGDPDNFTPANPLVTPPHIKPEWYFLF 238
Cdd:MTH00033 196 TLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLF 275
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 399569363 239 AYAILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 283
Cdd:MTH00033 276 AYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTG 320
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
3-270 |
3.00e-107 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 314.96 E-value: 3.00e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 3 LVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 82
Cdd:MTH00086 30 LVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIY 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 83 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 162
Cdd:MTH00086 110 LLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 163 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVgLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 242
Cdd:MTH00086 190 HSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAI 268
|
250 260
....*....|....*....|....*...
gi 399569363 243 LRSIPNKLGGVLALLFSILVLMLVPMLH 270
Cdd:MTH00086 269 LRAIPNKVLGVIALLMSIVVFYFFIFVN 296
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-168 |
9.68e-84 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 249.59 E-value: 9.68e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSY--LQKETWNIG 78
Cdd:cd00284 31 TCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIG 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 79 VILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIH 158
Cdd:cd00284 111 VILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILH 190
|
170
....*....|
gi 399569363 159 LLFLHQTGSN 168
Cdd:cd00284 191 LLFLHEQGSS 200
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
3-267 |
6.53e-82 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 250.67 E-value: 6.53e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 3 LVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 82
Cdd:MTH00046 32 MVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILY 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 83 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 162
Cdd:MTH00046 112 LLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYL 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 163 HQTGSNNPTGL-NSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYA 241
Cdd:MTH00046 192 HKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYA 271
|
250 260
....*....|....*....|....*.
gi 399569363 242 ILRSIPNKLGGvLALLFSILVLMLVP 267
Cdd:MTH00046 272 MLRSINSKIGG-LVLVLSFLFFLWVP 296
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-166 |
5.37e-79 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 237.28 E-value: 5.37e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYG--SYLQKETWNIG 78
Cdd:pfam00033 22 LCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 79 VILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIH 158
Cdd:pfam00033 102 VILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLH 181
|
....*...
gi 399569363 159 LLFLHQTG 166
Cdd:pfam00033 182 LLFLHETG 189
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
50-215 |
2.67e-50 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 163.18 E-value: 2.67e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 50 SFFFICLYLHVARGMYYGSYLQKE--TWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIW 127
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 128 GGFSVDNATLTRFFAFHF-LLPFVIAGASMIHLLFLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVAL 206
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 399569363 207 FSPNLLGDP 215
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
169-283 |
6.37e-42 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 141.24 E-value: 6.37e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 169 NPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 248
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110
....*....|....*....|....*....|....*
gi 399569363 249 KLGGVLALLFSILVLMLVPMLHTSKQRgNTFRPLS 283
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKR-SQFRPLR 114
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-170 |
3.06e-41 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 141.77 E-value: 3.06e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 1 LCLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKE--TWNIG 78
Cdd:PRK03735 50 FCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVG 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 79 VILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFH-FLLPFVIAGASMI 157
Cdd:PRK03735 130 VLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLA 209
|
170
....*....|...
gi 399569363 158 HLLFLHQTGSNNP 170
Cdd:PRK03735 210 HFLMIRKQGISGP 222
|
|
| petB |
CHL00070 |
cytochrome b6 |
2-170 |
6.12e-34 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 122.52 E-value: 6.12e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 2 CLVTQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKE--TWNIGV 79
Cdd:CHL00070 43 CFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGV 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 80 ILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFH-FLLPFVIAGASMIH 158
Cdd:CHL00070 123 VLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMH 202
|
170
....*....|..
gi 399569363 159 LLFLHQTGSNNP 170
Cdd:CHL00070 203 FLMIRKQGISGP 214
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
220-283 |
6.45e-31 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 111.03 E-value: 6.45e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 399569363 220 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 283
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLF 64
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
191-280 |
9.64e-13 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 64.81 E-value: 9.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 191 LLGFILMLVGLtsvALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPMLH 270
Cdd:COG5679 45 ILGTIALCIGL---AVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIE 116
|
90
....*....|
gi 399569363 271 TSKQRGNTFR 280
Cdd:COG5679 117 NVNKFQNPFR 126
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
191-280 |
2.68e-12 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 63.48 E-value: 2.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 191 LLGFILMLVGLtsvALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPMLH 270
Cdd:CHL00058 44 ILGTIACNVGL---AVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115
|
90
....*....|
gi 399569363 271 TSKQRGNTFR 280
Cdd:CHL00058 116 NVNKFQNPFR 125
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
191-280 |
8.55e-12 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 62.12 E-value: 8.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 399569363 191 LLGFILMLVGLtsvALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPMLH 270
Cdd:TIGR01156 44 ILGTIACVVGL---AVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115
|
90
....*....|
gi 399569363 271 TSKQRGNTFR 280
Cdd:TIGR01156 116 NVNKFQNPFR 125
|
|
| |
