|
Name |
Accession |
Description |
Interval |
E-value |
| spore_sigmaK |
TIGR02846 |
RNA polymerase sigma-K factor; The sporulation-specific transcription factor sigma-K (also ... |
1-196 |
1.17e-118 |
|
RNA polymerase sigma-K factor; The sporulation-specific transcription factor sigma-K (also called sigma-27) is expressed in the mother cell compartment of endospore-forming bacteria such as Bacillus subtilis. Like its close homolog sigma-E (sigma-29) (see TIGR02835), also specific to the mother cell compartment, it must be activated by a proteolytic cleavage. Note that in Bacillus subtilis (and apparently also Clostridium tetani), but not in other endospore forming species such as Bacillus anthracis, the sigK gene is generated by a non-germline (mother cell only) chromosomal rearrangement that recombines coding regions for the N-terminal and C-terminal regions of sigma-K. [Transcription, Transcription factors, Cellular processes, Sporulation and germination]
Pssm-ID: 131893 [Multi-domain] Cd Length: 227 Bit Score: 335.54 E-value: 1.17e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 1 KIFLTGYVTGNSTFPKPLNEKEEKIYLDRLKDGDVEAKRVLVERNLRLVAHIVKKYSSNyqnSKEMDDLISIGTIGLIKA 80
Cdd:TIGR02846 13 LLFLVGYVTNNGSFPQPLSEEEEKKYLDRLKEGDEEARNVLIERNLRLVAHIVKKFSNT---GEDVDDLISIGTIGLIKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 81 IDSFDTNKGIRLATYAAKCIDNEILMFFRNTKKTKGEVFLQDPIGVDKEGNEICLIDILSSDSDSVLEAVENSLQVKELY 160
Cdd:TIGR02846 90 IDSFDPDKGTRLATYAARCIENEILMHLRALKKTKGEVSLQDPIGVDKEGNEISLIDILGSDGDSVIEQVELNLEIKKLY 169
|
170 180 190
....*....|....*....|....*....|....*.
gi 400178498 161 KKMSdILSPREKEIIKMRYGLLDGDIKTQREIAAIL 196
Cdd:TIGR02846 170 KKLS-VLDGREREVIEMRYGLGDGRRKTQREIAKIL 204
|
|
| SigK |
COG5814 |
Sporulation sigma factor SigK (mother cell-specific, SpoIIIC/SpoIVCB) [Cell cycle control, ... |
2-196 |
3.16e-115 |
|
Sporulation sigma factor SigK (mother cell-specific, SpoIIIC/SpoIVCB) [Cell cycle control, cell division, chromosome partitioning, Transcription];
Pssm-ID: 444516 [Multi-domain] Cd Length: 234 Bit Score: 327.18 E-value: 3.16e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 2 IFLTGYVTGNStFPKPLNEKEEKIYLDRLKDGDVEAKRVLVERNLRLVAHIVKKYSSNyqnSKEMDDLISIGTIGLIKAI 81
Cdd:COG5814 17 LLLVSYINNNA-FPQPLSEEEEAKYLERMAEGDEEARNILIEHNLRLVAHIVKKFENT---GEDTEDLISIGTIGLIKAI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 82 DSFDTNKGIRLATYAAKCIDNEILMFFRNTKKTKGEVFLQDPIGVDKEGNEICLIDILSSDSDSVLEAVENSLQVKELYK 161
Cdd:COG5814 93 NTFDPDKGTKLATYAARCIENEILMHLRSTKKTRKEVSLQDPIGTDKEGNEITLIDILGTDEDDVVDQVELKLEKEKLYE 172
|
170 180 190
....*....|....*....|....*....|....*
gi 400178498 162 KMsDILSPREKEIIKMRYGLLDGDIKTQREIAAIL 196
Cdd:COG5814 173 KL-KKLSEREREVIELRYGLLNGEEKTQREIAKKL 206
|
|
| PRK05803 |
PRK05803 |
RNA polymerase sporulation sigma factor SigK; |
2-196 |
3.47e-111 |
|
RNA polymerase sporulation sigma factor SigK;
Pssm-ID: 180266 [Multi-domain] Cd Length: 233 Bit Score: 316.89 E-value: 3.47e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 2 IFLTGYVTGNStFPKPLNEKEEKIYLDRLKDGDVEAKRVLVERNLRLVAHIVKKYSSNyqnSKEMDDLISIGTIGLIKAI 81
Cdd:PRK05803 16 LFLVSYVKNNS-FPQPLSEEEERKYLELMKEGDEEARNILIERNLRLVAHIVKKFENT---GEDVDDLISIGTIGLIKAI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 82 DSFDTNKGIRLATYAAKCIDNEILMFFRNTKKTKGEVFLQDPIGVDKEGNEICLIDILSSDSDSVLEAVENSLQVKELYK 161
Cdd:PRK05803 92 ESFDAGKGTKLATYAARCIENEILMHLRNLKKTKKEVSLQDPIGVDKEGNEISLIDILGSEEDDVIEQVELKMEVEKLYK 171
|
170 180 190
....*....|....*....|....*....|....*
gi 400178498 162 KMsDILSPREKEIIKMRYGLLDGDIKTQREIAAIL 196
Cdd:PRK05803 172 KI-DILDEREKEVIEMRYGLGNGKEKTQREIAKAL 205
|
|
| PRK08301 |
PRK08301 |
RNA polymerase sporulation sigma factor SigE; |
7-196 |
6.49e-61 |
|
RNA polymerase sporulation sigma factor SigE;
Pssm-ID: 236228 [Multi-domain] Cd Length: 234 Bit Score: 189.30 E-value: 6.49e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 7 YVTGNSTFPKPLNEKEEKIYLDRLKDGDVEAKRVLVERNLRLVAHIVKKYSSNYQNskeMDDLISIGTIGLIKAIDSFDT 86
Cdd:PRK08301 23 YIGGSEALPPPLSKEEEEYLLNKLPKGDEAVRSLLIERNLRLVVYIARKFENTGIN---IEDLISIGTIGLIKAVNTFNP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 87 NKGIRLATYAAKCIDNEILMFFRNTKKTKGEVFLQDPIGVDKEGNEICLIDILSSDSDSVLEAVENSLQvKELYKKMSDI 166
Cdd:PRK08301 100 EKKIKLATYASRCIENEILMYLRRNNKVKAEVSFDEPLNIDWDGNELLLSDVLGTDNDIIYKDIEDEVD-RKLLKKALKK 178
|
170 180 190
....*....|....*....|....*....|
gi 400178498 167 LSPREKEIIKMRYGLLDGDIKTQREIAAIL 196
Cdd:PRK08301 179 LSDREKQIMELRFGLNGGEEKTQKEVADML 208
|
|
| RpoD |
COG0568 |
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]; DNA-directed RNA ... |
18-196 |
1.43e-31 |
|
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440334 [Multi-domain] Cd Length: 268 Bit Score: 115.15 E-value: 1.43e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 18 LNEKEEKIYLDRLKDGDVEAKRVLVERNLRLVAHIVKKYsSNYQNSkeMDDLISIGTIGLIKAIDSFDTNKGIRLATYAA 97
Cdd:COG0568 12 LTAEEEVELARRIQAGDEEAKRKLVEANLRLVVSIAKKY-QGRGLP--LLDLIQEGNLGLMKAVEKFDPERGFRFSTYAT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 98 KCIDNEILMF-FRNT----------------KKTKGE-----------------------------------VFLQDPIG 125
Cdd:COG0568 89 WWIRQAITRAiADQWrtirlpvhmaetlnklRRAKRQllqelgreptpeeiaeelgvpeekvremlrlarepVSLDAPVG 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 400178498 126 vdkEGNEICLIDILSSDS-DSVLEAVENSLQVKELYKKMSDiLSPREKEIIKMRYGLLDGDIKTQREIAAIL 196
Cdd:COG0568 169 ---DDEDSELGDLLEDEEaPSPEEALEEELLREELREALDT-LTEREREILRLRFGLDDGEPHTLEEIGKEF 236
|
|
| FliA |
COG1191 |
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ... |
27-196 |
3.52e-25 |
|
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440804 [Multi-domain] Cd Length: 236 Bit Score: 97.59 E-value: 3.52e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 27 LDRLKDGDVEAKRVLVERNLRLVAHIVKKYSSNYqnSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEILM 106
Cdd:COG1191 6 LRRYQEGDEEAREELIEEYLPLVKKIASRLAGRL--PAELDDLIQVGLIGLIEAIDRFDPSKGVSFETYAVPRIRGAILD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 107 FFR-----------NTKK----------------TKGEV-------------FLQDPIGV------DKEGNEICLIDILS 140
Cdd:COG1191 84 YLRdedwvprsvreLARKieeaieeleqelgrepTDEEIaeelgisleevqeALEAANAYqllsldEPLEDGDDLLDLLE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 400178498 141 SDS-DSVLEAVENslqvKELYKKMSDILSPREKEIIKMRY--GLldgdikTQREIAAIL 196
Cdd:COG1191 164 SGDpEEELEHEEL----REALAEAIEQLPERERLVLSLYYfeEL------TLKEIAEVL 212
|
|
| PRK08215 |
PRK08215 |
RNA polymerase sporulation sigma factor SigG; |
18-193 |
3.22e-20 |
|
RNA polymerase sporulation sigma factor SigG;
Pssm-ID: 181296 [Multi-domain] Cd Length: 258 Bit Score: 85.00 E-value: 3.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 18 LNEKEEKIYLDRLKDGDVEAKRVLVERNLRLVAHIVKKYSSNYQNskeMDDLISIGTIGLIKAIDSFDTNKGIRLATYAA 97
Cdd:PRK08215 19 LKNEEMRELFERMQNGDKEAREKLINGNLRLVLSVIQRFNNRGEN---VDDLFQVGCIGLMKAIDNFDLSQNVKFSTYAV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 98 KCIDNEILMFFRN------------------------TKKTKGE-----------------VF----LQDPIGV-----D 127
Cdd:PRK08215 96 PMIIGEIRRYLRDnnpirvsrslrdiaykalqvreklINENSKEptveeiakelevpreevVFaldaIQDPVSLfepiyH 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 400178498 128 KEGNEICLIDILSSDSDSVLEAVENsLQVKELYKKmsdiLSPREKEIIKMRYglLDGdiKTQREIA 193
Cdd:PRK08215 176 DGGDPIYVMDQISDEKNKDENWLEE-IALKEAMKK----LNDREKLILNLRF--FQG--KTQMEVA 232
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
41-114 |
1.49e-17 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 73.39 E-value: 1.49e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 400178498 41 LVERNLRLVAHIVKKYSSNYQnskEMDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEILMFFRNTKKT 114
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGA---DAEDLVQEGFLGLWRAIERFDPERGVSFSTWLYTIIRNAIIDYLRKQRRT 71
|
|
| PRK05572 |
PRK05572 |
RNA polymerase sporulation sigma factor, SigF/SigG family; |
17-196 |
2.51e-17 |
|
RNA polymerase sporulation sigma factor, SigF/SigG family;
Pssm-ID: 180137 [Multi-domain] Cd Length: 252 Bit Score: 77.32 E-value: 2.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 17 PLNEKEEKIYLDRLKDGDVEAKRVLVERNLRLVAHIVKKYS-SNYqnskEMDDLISIGTIGLIKAIDSFDTNKGIRLATY 95
Cdd:PRK05572 13 QLKDEENKELIKKSQDGDQEARDTLVEKNLRLVWSVVQRFLnRGY----EPDDLFQIGCIGLLKAVDKFDLSYDVKFSTY 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 96 AAKCIDNEILMFFRN------------------------TKK-----TKGEvfLQDPIGVDKE----------------- 129
Cdd:PRK05572 89 AVPMIIGEIQRFLRDdgtvkvsrslketankirkdkdelSKElgrepTIEE--LAEYLGVTPEevvlaqeasrspqsihe 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 400178498 130 ------GNEICLIDILSSDSDsvlEAVENSLQVKELYKKmsdiLSPREKEIIKMRYgLLDgdiKTQREIAAIL 196
Cdd:PRK05572 167 tvhendGDPITLLDQIADQSE---EDWFDKIALKEAIRE----LDERERLIVYLRY-FKD---KTQSEVAKRL 228
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
36-196 |
1.63e-16 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 73.15 E-value: 1.63e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 36 EAKRVLVERNLRLVAHIVKKYssnYQNSKEMDDLISIGTIGLIKAIDSFDTNKgiRLATYAAKCIDNEILMFFRNTKKTK 115
Cdd:TIGR02937 1 EAFEELYERYLPLVYRYARRY---LGDDADAEDLVQEAFLKLLEALDRFDPEG--SFKAWLFRIARNLILDYLRRKRRLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 116 GEVFlqdpigvdkegneicLIDILSSDSDSVLEAVENSLQVKELYKKMsDILSPREKEIIKMRYglLDGdiKTQREIAAI 195
Cdd:TIGR02937 76 RELD---------------LLEELLDSDPSPEEELEQEEEREALREAL-EKLPEREREVLVLRY--LEG--LSYKEIAEI 135
|
.
gi 400178498 196 L 196
Cdd:TIGR02937 136 L 136
|
|
| PRK08295 |
PRK08295 |
RNA polymerase sporulation sigma factor SigH; |
16-196 |
3.27e-16 |
|
RNA polymerase sporulation sigma factor SigH;
Pssm-ID: 181361 [Multi-domain] Cd Length: 208 Bit Score: 73.40 E-value: 3.27e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 16 KPLNEKEEKIYLDRLKDGDVEAKRVLVERNLRLVAHIVKKYssnYQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATY 95
Cdd:PRK08295 4 KDYDELEDEELVELARSGDKEALEYLIEKYKNFVRAKARSY---FLIGADREDIVQEGMIGLYKAIRDYDKDKLSSFKSF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 96 AAKCIDNEILMFFR--NTKKTKgevFLQDPIGVDK----EGNEICLIDILSSDSDSVLE-AVENSLQVKELYKKMSDILS 168
Cdd:PRK08295 81 AELCITRQIITAIKtaNRQKHI---PLNSYVSLDKpiydEESDRTLLDVISEAKVTDPEeLIISKEELEDIEEKIEELLS 157
|
170 180
....*....|....*....|....*...
gi 400178498 169 PREKEIIkMRYglLDGdiKTQREIAAIL 196
Cdd:PRK08295 158 ELEKEVL-ELY--LDG--KSYQEIAEEL 180
|
|
| PRK07598 |
PRK07598 |
RNA polymerase sigma factor SigC; Validated |
27-196 |
9.60e-16 |
|
RNA polymerase sigma factor SigC; Validated
Pssm-ID: 236067 [Multi-domain] Cd Length: 415 Bit Score: 74.14 E-value: 9.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 27 LDRLKDGDVEAKRVLVERNLRLVAHIVKKYssnyQNSK-EMDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCID---- 101
Cdd:PRK07598 166 LEQIQKQGLRAKEHMIKANLRLVVSVAKKY----QNRGlELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRqgit 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 102 --------------------NEILMFFRNTKKTKG--------------------EVFLQDP--------IGVDKEGNei 133
Cdd:PRK07598 242 raiatqsrtirlpvhiteklNKIKKAQRKISQEKGrtptiediaqelemtptqvrEVLLRVPrsvsletkVGKDKDTE-- 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 400178498 134 cLIDILSSDSDSVLE-AVENSLQvKELYKKMSDiLSPREKEIIKMRYGLLDGDIKTQREIAAIL 196
Cdd:PRK07598 320 -LGDLLETDDISPEEmLMRESLQ-RDLQHLLAD-LTSRERDVIRMRFGLADGHTYSLAEIGRAL 380
|
|
| PRK06596 |
PRK06596 |
RNA polymerase factor sigma-32; Reviewed |
4-194 |
7.04e-15 |
|
RNA polymerase factor sigma-32; Reviewed
Pssm-ID: 235838 [Multi-domain] Cd Length: 284 Bit Score: 70.97 E-value: 7.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 4 LTGYVTGNSTFPKpLNEKEEKIYLDRLKD-GDVEAKRVLVERNLRLVAHIVKKYSSnY---QNskemdDLISIGTIGLIK 79
Cdd:PRK06596 16 LDAYIQAVNKIPM-LTAEEEYMLAKRLREhGDLEAAKQLVLSHLRFVVHIARGYRG-YglpQA-----DLIQEGNIGLMK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 80 AIDSFDTNKGIRLATYAAKCIDNEI----L----------------MFFrNTKKTKG--------EVFL----------- 120
Cdd:PRK06596 89 AVKRFDPEVGVRLVSFAVHWIKAEIheyiLrnwrivkvattkaqrkLFF-NLRKAKKrlgwlnpeEVEMvaeelgvseee 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 121 ----------QD-----PIGvDKEGNEICLIDIL---SSDSDSVLEAVENSLQVKELYKKMSDILSPREKEIIKMRYglL 182
Cdd:PRK06596 168 vremesrlsgQDasldaPID-DDDEESGAPQDYLedkSSDPADVLEEDNWEDQRRALLADALEGLDERSRDIIEARW--L 244
|
250
....*....|..
gi 400178498 183 DGDIKTQREIAA 194
Cdd:PRK06596 245 DDDKSTLQELAA 256
|
|
| PRK05657 |
PRK05657 |
RNA polymerase sigma factor RpoS; Validated |
16-194 |
9.14e-15 |
|
RNA polymerase sigma factor RpoS; Validated
Pssm-ID: 235548 [Multi-domain] Cd Length: 325 Bit Score: 71.14 E-value: 9.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 16 KPLNEKEEKIYLDRL-KDGDVEAKRVLVERNLRLVAHIVKKYSSnyqNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLAT 94
Cdd:PRK05657 65 SPLLTAEEEVYFARRaLRGDFAARQRMIESNLRLVVKIAKRYLN---RGLALLDLIEEGNLGLIRAVEKFDPERGFRFST 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 95 YAA--------KCIDN-------------EILMFFRN----TKKTKGEVFLQD--------------------------- 122
Cdd:PRK05657 142 YATwwirqtieRAIMNqtrtirlpvhvvkELNVYLRAarelEHKLDHEPSAEEiaelldkpvddvsrmlalneritsldt 221
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 400178498 123 PIGVDKEGNeicLIDILSSDSDSVLEAVENSLQVKELYKKMSDILSPREKEIIKMRYGLLDGDIKTQREIAA 194
Cdd:PRK05657 222 PLGGDPEKS---LLDILADEQENGPEDTTQDDDMKQSIVKWLFELNDKQREVLARRFGLLGYEAATLEDVAR 290
|
|
| PRK09210 |
PRK09210 |
RNA polymerase sigma factor RpoD; Validated |
18-96 |
4.32e-14 |
|
RNA polymerase sigma factor RpoD; Validated
Pssm-ID: 236413 [Multi-domain] Cd Length: 367 Bit Score: 69.24 E-value: 4.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 18 LNEKEEKIYLDRLKDGDVEAKRVLVERNLRLVAHIVKKYSsnyqnSKEMD--DLISIGTIGLIKAIDSFDTNKGIRLATY 95
Cdd:PRK09210 111 LTAEEEIELAKRIEEGDEEAKQRLAEANLRLVVSIAKRYV-----GRGMLflDLIQEGNMGLMKAVEKFDYRKGFKFSTY 185
|
.
gi 400178498 96 A 96
Cdd:PRK09210 186 A 186
|
|
| PRK07406 |
PRK07406 |
RNA polymerase sigma factor RpoD; Validated |
17-195 |
9.37e-14 |
|
RNA polymerase sigma factor RpoD; Validated
Pssm-ID: 236012 [Multi-domain] Cd Length: 373 Bit Score: 68.27 E-value: 9.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 17 PLNEKEEKIYLDRlkdgdvEAKRVLVERNLRLVAHIVKKYssnyQNSK-EMDDLISIGTIGLIKAIDSFDTNKGIRLATY 95
Cdd:PRK07406 123 PLPKFRRRLMLGR------RAKEKMVQSNLRLVVSIAKKY----MNRGlSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTY 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 96 AA--------------------------------------------KCIDNEI----------LMFFRntKKTKGEVFLQ 121
Cdd:PRK07406 193 ATwwirqaitraiadqsrtirlpvhlyetisrikkttkvlsqefgrKPTEEEIaesmemtiekLRFIA--KSAQLPISLE 270
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 400178498 122 DPIGVDKEGNeicLIDILSSDSDSVLEAVENSLqVKELYKKMSDILSPREKEIIKMRYGLLDGDIKTQREIAAI 195
Cdd:PRK07406 271 TPIGKEEDSR---LGDFIEADGETPEDDVAKNL-LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQI 340
|
|
| PRK05901 |
PRK05901 |
RNA polymerase sigma factor; Provisional |
5-194 |
2.81e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 235640 [Multi-domain] Cd Length: 509 Bit Score: 67.33 E-value: 2.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 5 TGYVTGNSTFPKPLNEKEEKIYLDRLKDGDvEAKRVLVERNLRLVAHIVKKYSSnyqnsKEMD--DLISIGTIGLIKAID 82
Cdd:PRK05901 241 GLYAEELLAEGEKLDPELRRDLQWIGRDGK-RAKNHLLEANLRLVVSLAKRYTN-----RGLSflDLIQEGNLGLIKAVE 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 83 SFDTNKGIRLATYA---------------AKCI-----------------------------DNEIL--MFF-----RNT 111
Cdd:PRK05901 315 KFDYTKGYKFSTYAtwwirqaitramadqARTIripvhmvetinklgrierellqelgreptPEELAkeMGFtpekvREI 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 112 KKtkgevFLQDPIGVDK---EGNEICLIDILsSDSDSV--LEAVENSLqvkeLYKKMSDI---LSPREKEIIKMRYGLLD 183
Cdd:PRK05901 395 QK-----YNREPISLDKtigKEGDSQFGDFI-EDSEAVspVDAVSFTL----LQDQLQEVletLSEREAGVIRMRFGLTD 464
|
250
....*....|.
gi 400178498 184 GDIKTQREIAA 194
Cdd:PRK05901 465 GQPKTLDEIGQ 475
|
|
| PRK07921 |
PRK07921 |
RNA polymerase sigma factor SigB; Reviewed |
31-192 |
1.46e-12 |
|
RNA polymerase sigma factor SigB; Reviewed
Pssm-ID: 181169 [Multi-domain] Cd Length: 324 Bit Score: 64.75 E-value: 1.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 31 KDGdVEAKRVLVERNLRLVAHIVKKYSSnyqnsKEMD--DLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEILMFF 108
Cdd:PRK07921 82 RDG-EAARRHLLEANLRLVVSLAKRYTG-----RGMPllDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGM 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 109 RNTKKT-----------------KGEVFLQ-----------------------------DPIGVDK---EGNEICLID-I 138
Cdd:PRK07921 156 ADQSRTirlpvhlveqvnklariKRELHQQlgreatdeelaeesgipeekiadllehsrDPVSLDMpvgSDEEAPLGDfI 235
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 400178498 139 LSSDSDSVLEAVENSLQVKELyKKMSDILSPREKEIIKMRYGLLDGDIKTQREI 192
Cdd:PRK07921 236 EDSEATSAENAVIAGLLHTDI-RSVLATLDEREQQVIRLRFGLDDGQPRTLDQI 288
|
|
| PRK07405 |
PRK07405 |
RNA polymerase sigma factor SigD; Validated |
30-196 |
1.81e-10 |
|
RNA polymerase sigma factor SigD; Validated
Pssm-ID: 180963 [Multi-domain] Cd Length: 317 Bit Score: 58.62 E-value: 1.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 30 LKDGDVeAKRVLVERNLRLVAHIVKKYssnYQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATYA------------- 96
Cdd:PRK07405 76 IAEGEA-AKRKMVEANLRLVVSVAKKY---LKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAywwirqaitraia 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 97 --AKCIDNEILMFFRNTKKTKGEVFLQDPIGVDKEGNEIC----------------------------------LIDILS 140
Cdd:PRK07405 152 ekSRTIRLPIHITEKLNKIKKAQRQLSQQLGRAATIGELAeeleltpkqvreylerarqplsldlrvgdnqdteLGELLE 231
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 400178498 141 SDSDSVLE-AVENSLQVkELYKKMSDiLSPREKEIIKMRYGLLDGDIKTQREIAAIL 196
Cdd:PRK07405 232 DTGASPEDfATQSSLQL-DLERLMED-LTPQQKEVIALRFGLEDGQPLTLAKIGERL 286
|
|
| PRK07408 |
PRK07408 |
RNA polymerase sigma factor SigF; Reviewed |
41-109 |
9.76e-10 |
|
RNA polymerase sigma factor SigF; Reviewed
Pssm-ID: 180965 [Multi-domain] Cd Length: 256 Bit Score: 56.08 E-value: 9.76e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 400178498 41 LVERNLRLV---AH-IVKKYSSNYqnskemDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEILMFFR 109
Cdd:PRK07408 30 LVELNLGLVrkeAHrWSNQCSEPY------EDLVQVGSLGLIRAIERFDPSKGHAFSSFAIPYIRGEIQHYLR 96
|
|
| PRK05949 |
PRK05949 |
RNA polymerase sigma factor; Validated |
18-96 |
1.13e-09 |
|
RNA polymerase sigma factor; Validated
Pssm-ID: 180321 [Multi-domain] Cd Length: 327 Bit Score: 56.39 E-value: 1.13e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 400178498 18 LNEKEEKIYLDRLKdgdvEAKRVLVERNLRLVAHIVKKYSsnyQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATYA 96
Cdd:PRK05949 77 LSETELKQTLKQGK----RAKQKMIEANLRLVVAIAKKYQ---KRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 148
|
|
| FliA_WhiG |
TIGR02479 |
RNA polymerase sigma factor, FliA/WhiG family; Most members of this family are the flagellar ... |
41-105 |
1.41e-09 |
|
RNA polymerase sigma factor, FliA/WhiG family; Most members of this family are the flagellar operon sigma factor FliA, controlling transcription of bacterial flagellar genes by RNA polymerase. An exception is the sigma factor WhiG in the genus Streptomyces, involved in the production of sporulating aerial mycelium.
Pssm-ID: 274153 [Multi-domain] Cd Length: 224 Bit Score: 55.36 E-value: 1.41e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 400178498 41 LVERNLRLVAHIVKKYSSNYQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEIL 105
Cdd:TIGR02479 1 LIRRYLPLVKRIAGRLSVGLPSSVELDDLIQAGMFGLLDAIERYDPSRGAKFETYAVQRIRGAML 65
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
27-196 |
2.54e-09 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 54.23 E-value: 2.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 27 LDRLKDGDVEAKRVLVERNLRLVAHIVKKYSSNYQNSkemDDLISIGTIGLIKAIDSFDTNKgiRLATYAAKCIDNEILM 106
Cdd:COG1595 8 LERLRAGDEAAFEELYERYRPRLYRYARRLLGDRADA---EDLVQETFLRLWRKLDSFRGRG--SFRAWLYRIARNLAID 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 107 FFRntKKTKGEVFLQDpigvdkegneicLIDILSSDSDSVLEAVENSLQVKELYKKMSDiLSPREKEIIKMRYglLDGdi 186
Cdd:COG1595 83 HLR--KRRRRRELLDE------------LAEELPDEAADPEEALEAEELLEALLAALER-LPPRQREVLVLRY--LEG-- 143
|
170
....*....|
gi 400178498 187 KTQREIAAIL 196
Cdd:COG1595 144 LSYAEIAEIL 153
|
|
| PRK06288 |
PRK06288 |
RNA polymerase sigma factor WhiG; Reviewed |
15-96 |
4.00e-09 |
|
RNA polymerase sigma factor WhiG; Reviewed
Pssm-ID: 235770 [Multi-domain] Cd Length: 268 Bit Score: 54.69 E-value: 4.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 15 PKPLNEKEEKIYLDRLKDGDVEAKRVLVERNLRLVAHIVKKYSSNYQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLAT 94
Cdd:PRK06288 10 PKYAQQDETELWREYKKTGDPKIREYLILKYSPLVKYVAGRIAVGMPQNVEFDDLVSYGVFGLIDAIEKFDPEREIKFKT 89
|
..
gi 400178498 95 YA 96
Cdd:PRK06288 90 YA 91
|
|
| PRK08583 |
PRK08583 |
RNA polymerase sigma factor SigB; Validated |
16-179 |
1.53e-07 |
|
RNA polymerase sigma factor SigB; Validated
Pssm-ID: 236306 [Multi-domain] Cd Length: 257 Bit Score: 50.08 E-value: 1.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 16 KPLNEKEEKIYL---DRLKDGDVEAKRVLVERNLRLVAHIVKKYSsnyQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRL 92
Cdd:PRK08583 6 QPTKLTKEEVNKwiaEYQENQDEEAQEKLVKHYKNLVESLAYKYS---KGQSHHEDLVQVGMVGLLGAIRRYDPSFGRSF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 93 ATYAAKCIDNEILMFFRNT-----------------KK------------------------TKGEVF------------ 119
Cdd:PRK08583 83 EAFAVPTIIGEIKRYLRDKtwsvhvprrikelgpkiKKavdelttelqrspkiseiadrlgvSEEEVLeamemgksyqal 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 400178498 120 -LQDPIGVDKEGNEICLIDILSSdSDSVLEAVENSLqvkeLYKKMSDILSPREKEIIKMRY 179
Cdd:PRK08583 163 sVDHSIEADSDGSTVTLLDIVGQ-QEDGYELTEQRM----ILEKILPVLSDREKSIIQCTF 218
|
|
| PRK07670 |
PRK07670 |
FliA/WhiG family RNA polymerase sigma factor; |
17-105 |
2.21e-07 |
|
FliA/WhiG family RNA polymerase sigma factor;
Pssm-ID: 181075 [Multi-domain] Cd Length: 251 Bit Score: 49.66 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 17 PLNEKEEKIYLDRLKDGDVEAKRVLVERNLRLVAHIVKKYSSNYQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATYA 96
Cdd:PRK07670 3 SLTYEEQKLWDRWKEERDPDAADELIRRYMPLVHYHVQRISVGLPKSVSKDDLKSLGMLGLYDALEKFDPSRDLKFDTYA 82
|
....*....
gi 400178498 97 AKCIDNEIL 105
Cdd:PRK07670 83 SFRIRGAII 91
|
|
| PRK05658 |
PRK05658 |
RNA polymerase sigma factor RpoD; Validated |
36-96 |
8.84e-07 |
|
RNA polymerase sigma factor RpoD; Validated
Pssm-ID: 235549 [Multi-domain] Cd Length: 619 Bit Score: 48.25 E-value: 8.84e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 400178498 36 EAKRVLVERNLRLVAHIVKKYSSnyqnskemdDLISIGTIGLIKAIDSFDTNKGIRLATYA 96
Cdd:PRK05658 380 RAKKEMVEANLRLVISIAKKYTNrgl---qflDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 437
|
|
| fliA |
PRK06986 |
flagellar biosynthesis sigma factor; Validated |
41-100 |
1.06e-06 |
|
flagellar biosynthesis sigma factor; Validated
Pssm-ID: 235901 [Multi-domain] Cd Length: 236 Bit Score: 47.53 E-value: 1.06e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 41 LVERNLRLVAHIVKKYSSNYQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCI 100
Cdd:PRK06986 13 LVEQYAPLVKRIALRLKARLPASVDLDDLIQAGMIGLLEAARRYDGEQGASFETYAGQRI 72
|
|
| rpoH2 |
PRK07500 |
RNA polymerase factor sigma-32; Reviewed |
17-96 |
3.34e-06 |
|
RNA polymerase factor sigma-32; Reviewed
Pssm-ID: 236033 [Multi-domain] Cd Length: 289 Bit Score: 46.18 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 17 PLNEKEEKIYLD-RLKDG-DVEAKRVLVERNLRLVAHIVKKYSsNYQNSkeMDDLISIGTIGLIKAIDSFDTNKGIRLAT 94
Cdd:PRK07500 19 PYLEREEEHALAyRWKDHrDEDALHRIISAHMRLVISMAGKFR-RFGLP--MNDLIQEGYVGLLEAAARFEPDREVRFST 95
|
..
gi 400178498 95 YA 96
Cdd:PRK07500 96 YA 97
|
|
| PRK07122 |
PRK07122 |
RNA polymerase sigma factor SigF; Reviewed |
27-111 |
5.55e-06 |
|
RNA polymerase sigma factor SigF; Reviewed
Pssm-ID: 168831 [Multi-domain] Cd Length: 264 Bit Score: 45.54 E-value: 5.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 27 LDRLKDGDVEAKRV---LVERNLRLVAHIVKKYSSNYQNskeMDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNE 103
Cdd:PRK07122 28 LAGLPAGSPEFQRQrdrIVTRCLPLADHIARRFDGRGEP---RDDLVQVARVGLVNAVNRFDVETGSDFVSFAVPTIMGE 104
|
....*...
gi 400178498 104 ILMFFRNT 111
Cdd:PRK07122 105 VRRHFRDN 112
|
|
| PRK08311 |
PRK08311 |
RNA polymerase sigma factor SigI; |
26-165 |
1.00e-05 |
|
RNA polymerase sigma factor SigI;
Pssm-ID: 236233 [Multi-domain] Cd Length: 237 Bit Score: 44.48 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 26 YLDRLKDGDVEAKRVLVERNLRLVAHIVKKYSSNYQNSKEMDDLiSIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEIL 105
Cdd:PRK08311 8 ILEKIKNGDEELREELIEEYKPFIAKVVSSVCGRYIDWENDDEL-SIGLIAFNEAIDSYDEEKGKSFLSFAELVIKRRLI 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 400178498 106 MFFRNTKKTKGEVFLQDPigvdkEGNEICLIDI--LSSDSDSVLEAVENSLQVKELYKKMSD 165
Cdd:PRK08311 87 DYFRKESKHNLVLSNSDE-----EDEEENDIEIelSLEEYQEEEENEERREEIEEFKKELKE 143
|
|
| spore_sigI |
TIGR02895 |
RNA polymerase sigma-I factor; Members of this sigma factor protein family are strictly ... |
36-122 |
3.07e-05 |
|
RNA polymerase sigma-I factor; Members of this sigma factor protein family are strictly limited to endospore-forming species in the Firmicutes lineage of bacteria, but are not universally present among such species. Sigma-I was shown to be induced by heat shock () in Bacillus subtilis and is suggested by its phylogenetic profile to be connected to the program of sporulation (). [Transcription, Transcription factors, Cellular processes, Sporulation and germination]
Pssm-ID: 131941 [Multi-domain] Cd Length: 218 Bit Score: 43.21 E-value: 3.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 400178498 36 EAKRVLVERNLRLVAHIVKKYSSNYQNSKEmDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEILMFFRNTKKTK 115
Cdd:TIGR02895 9 EEREELIRQYKPFIAKIVSSVCGRYIDTKS-DDELSIGLIAFNEAIESYDSNKGKSFLSFAKLIIKRRLIDYIRKNQKYQ 87
|
....*..
gi 400178498 116 GEVFLQD 122
Cdd:TIGR02895 88 NLLYLDE 94
|
|
| PRK05911 |
PRK05911 |
RNA polymerase sigma factor sigma-28; Reviewed |
34-105 |
1.01e-04 |
|
RNA polymerase sigma factor sigma-28; Reviewed
Pssm-ID: 235644 [Multi-domain] Cd Length: 257 Bit Score: 41.91 E-value: 1.01e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 400178498 34 DVEAKRVLVERNLRLVAHIVKKYSSNYQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEIL 105
Cdd:PRK05911 21 EIEYRDVLIEFYLPLVKNVAHRLISGMPSHVKTEDLYASGVEGLVRAVERFDPEKSRRFEGYALFLIKAAII 92
|
|
| Sigma70_r4 |
pfam04545 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
165-196 |
7.21e-03 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.
Pssm-ID: 461347 [Multi-domain] Cd Length: 50 Bit Score: 33.56 E-value: 7.21e-03
10 20 30
....*....|....*....|....*....|..
gi 400178498 165 DILSPREKEIIKMRYglldGDIKTQREIAAIL 196
Cdd:pfam04545 3 ASLPPRERQVLVLRY----GEGLTLEEIGERL 30
|
|
| PRK09277 |
PRK09277 |
aconitate hydratase AcnA; |
119-162 |
9.06e-03 |
|
aconitate hydratase AcnA;
Pssm-ID: 236445 [Multi-domain] Cd Length: 888 Bit Score: 36.25 E-value: 9.06e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 400178498 119 FLQDPIGVDKEGNEICLIDILSSDsDSVLEAVENSLQvKELYKK 162
Cdd:PRK09277 563 LEKDPLGTDKDGNPVYLKDIWPSD-EEIDAVVAKAVK-PEMFRK 604
|
|
|