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Conserved domains on  [gi|410904070|ref|XP_003965516|]
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UPF0184 protein C9orf16 homolog [Takifugu rubripes]

Protein Classification

UPF0184 family protein( domain architecture ID 10508482)

UPF0184 family protein similar to Homo sapiens protein C9orf16

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UPF0184 pfam03670
Uncharacterized protein family (UPF0184);
1-84 2.10e-30

Uncharacterized protein family (UPF0184);


:

Pssm-ID: 112485  Cd Length: 83  Bit Score: 103.49  E-value: 2.10e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410904070    1 MSGPNGDPNISVEDGLINDDDDFGSEEYEAINSMLDQINSYLDDLEERNDSLNGKLHELMESNRQARLEFRAQLSnHTPQ 80
Cdd:pfam03670   1 MSGPNGDDPSSVEDGGNTNVDEFGLQEYEAINSMLDQINSALDALEERNDDLMSQLRELLESNRQIRLEFAEQLD-NAPE 79


                  ....
gi 410904070   81 EDSA 84
Cdd:pfam03670  80 SGSD 83
 
Name Accession Description Interval E-value
UPF0184 pfam03670
Uncharacterized protein family (UPF0184);
1-84 2.10e-30

Uncharacterized protein family (UPF0184);


Pssm-ID: 112485  Cd Length: 83  Bit Score: 103.49  E-value: 2.10e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410904070    1 MSGPNGDPNISVEDGLINDDDDFGSEEYEAINSMLDQINSYLDDLEERNDSLNGKLHELMESNRQARLEFRAQLSnHTPQ 80
Cdd:pfam03670   1 MSGPNGDDPSSVEDGGNTNVDEFGLQEYEAINSMLDQINSALDALEERNDDLMSQLRELLESNRQIRLEFAEQLD-NAPE 79


                  ....
gi 410904070   81 EDSA 84
Cdd:pfam03670  80 SGSD 83
 
Name Accession Description Interval E-value
UPF0184 pfam03670
Uncharacterized protein family (UPF0184);
1-84 2.10e-30

Uncharacterized protein family (UPF0184);


Pssm-ID: 112485  Cd Length: 83  Bit Score: 103.49  E-value: 2.10e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 410904070    1 MSGPNGDPNISVEDGLINDDDDFGSEEYEAINSMLDQINSYLDDLEERNDSLNGKLHELMESNRQARLEFRAQLSnHTPQ 80
Cdd:pfam03670   1 MSGPNGDDPSSVEDGGNTNVDEFGLQEYEAINSMLDQINSALDALEERNDDLMSQLRELLESNRQIRLEFAEQLD-NAPE 79


                  ....
gi 410904070   81 EDSA 84
Cdd:pfam03670  80 SGSD 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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