NCBI Conserved Domain Search

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

96-346

2.03e-35

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 129.85 E-value: 2.03e-35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  96 YYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQD 175
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 176 RPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRA 255
Cdd:COG2956   91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 256 VALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRARDLFRQANDAEG 335
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250

                        250
                 ....*....|.
gi 427987101 336 LQKAESALDGL 346
Cdd:COG2956  251 LADLLERKEGL 261

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

22-160

3.52e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.15 E-value: 3.52e-17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  22 DQELRDLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGF 101
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 427987101 102 ALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKN 160
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139

Name

Accession

Description

Interval

E-value

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

96-346

2.03e-35

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 129.85 E-value: 2.03e-35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  96 YYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQD 175
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 176 RPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRA 255
Cdd:COG2956   91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 256 VALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRARDLFRQANDAEG 335
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250

                        250
                 ....*....|.
gi 427987101 336 LQKAESALDGL 346
Cdd:COG2956  251 LADLLERKEGL 261

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

38-316

5.58e-26

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 109.02 E-value: 5.58e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   38 SGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYR 117
Cdd:TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  118 RSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNV 197
Cdd:TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  198 HLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQE 277
Cdd:TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 427987101  278 DYLRAIVAYRRLLEITPNNPTAYYqLGVALKGRDRPQEA 316
Cdd:TIGR02917 718 DYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEA 755

PRK11447

cellulose synthase subunit BcsC; Provisional

31-322

7.74e-18

cellulose synthase subunit BcsC; Provisional

Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 84.75 E-value: 7.74e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   31 QGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALD------NKNADFYYALGFALA 104
Cdd:PRK11447  275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDphssnrDKWESLLKVNRYWLL 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  105 NQE--------DYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYlQQDR 176
Cdd:PRK11447  355 IQQgdaalkanNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY-RQQS 433

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  177 PQDALrSFQQALAIApnsgnvhlklgvtqllmgnTQAGIASLERAAELEPRNaevhlQVGKVLQAQGQNEAALNSLRRAV 256
Cdd:PRK11447  434 PEKAL-AFIASLSAS-------------------QRRSIDDIERSLQNDRLA-----QQAEALENQGKWAQAAELQRQRL 488

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 427987101  257 ALQPN-------LAEAQAAIGEVYinqedylRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNR 322
Cdd:PRK11447  489 ALDPGsvwltyrLAQDLRQAGQRS-------QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT 554

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

22-160

3.52e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.15 E-value: 3.52e-17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  22 DQELRDLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGF 101
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 427987101 102 ALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKN 160
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139

ACL4-like

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

140-328

3.29e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 63.42 E-value: 3.29e-11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 140 QGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNV-HLKLGvtQLLMGN-----TQA 213
Cdd:cd24142   13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEkYLYLG--QLSGGEealqyYEK 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 214 GIASLERaaeleprnaevhlQVGKVLQAQGQNEAALNSLRRavalqpNLAEAQAAIGEVYINQ-----------EDYLra 282
Cdd:cd24142   91 GIEILEE-------------ELQALQAASAEAEEEAEELKR------KLSSALCALAEIYMTDlcdepdaeqrcEELI-- 149

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 427987101 283 ivayRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRARDLFR 328
Cdd:cd24142  150 ----TKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELWK 191

gliding_GltE

NF033758

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...

50-191

2.04e-07

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.

Pssm-ID: 468174 [Multi-domain] Cd Length: 411 Bit Score: 52.13 E-value: 2.04e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  50 RAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINA 129
Cdd:NF033758 213 RAVKIDQNDPELHHTVGLILLQEGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLRRILQADGKNAAA 292

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 427987101 130 HLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSI-YLQQDRPQDALRSFQQALAIA 191
Cdd:NF033758 293 HLNLGVAYKGQGQYDKAMQEYDEAEKLDPELAAIYLNRAIIlHRVKDAPERAVELYKKYIAMA 355

TPR_11

TPR repeat;

66-106

8.25e-06

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 42.07 E-value: 8.25e-06

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 427987101   66 GYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQ 106
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41

TPR_11

TPR repeat;

270-307

8.55e-05

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.38 E-value: 8.55e-05

                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 427987101  270 GEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVAL 307
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAY 38

TPR

smart00028

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...

161-193

2.79e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 2.79e-03

                           10        20        30
                   ....*....|....*....|....*....|...
gi 427987101   161 WQAYESIGSIYLQQDRPQDALRSFQQALAIAPN 193
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33

BTAD

smart01043

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...

23-156

6.06e-03

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.

Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 36.90 E-value: 6.06e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101    23 QELRDLLKQGRELvQSGDLTGALAAYERAATLSQDNPriFSGIGYvqarqgnyAASAEAYRRAiaLDNKNADFYYALGFA 102
Cdd:smart01043   4 DRFERLVAAARAA-LAADPEAALALLEAALALYRGPL--LADVPD--------EDWAEAERER--LRELRLEALEALAEA 70

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 427987101   103 LANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSL 156
Cdd:smart01043  71 LLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRL 124

PLN03088

SGT1, suppressor of G2 allele of SKP1; Provisional

27-124

7.67e-03

SGT1, suppressor of G2 allele of SKP1; Provisional

Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 37.84 E-value: 7.67e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  27 DLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQ 106
Cdd:PLN03088   4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83

                         90
                 ....*....|....*...
gi 427987101 107 EDYRGASDAYRRSAQLDP 124
Cdd:PLN03088  84 EEYQTAKAALEKGASLAP 101

LcrH_SycD

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...

21-126

8.97e-03

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 36.12 E-value: 8.97e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   21 SDQELRDLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALG 100
Cdd:TIGR02552  13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92

                          90       100
                  ....*....|....*....|....*.
gi 427987101  101 FALANQEDYRGASDAYRRSAQLDPKN 126
Cdd:TIGR02552  93 ECLLALGEPESALKALDLAIEICGEN 118

BTAD

cd15831

Bacterial Transcriptional Activation (BTA) domain; The Bacterial Transcriptional Activation ...

23-153

9.51e-03

Bacterial Transcriptional Activation (BTA) domain; The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.

Pssm-ID: 276938 [Multi-domain] Cd Length: 146 Bit Score: 36.04 E-value: 9.51e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  23 QELRDLLKQGRELVQSGDLTGALAAYERAATLSQDNPriFSGIGYVQARQGNYAASAEAYRRAIaldnknaDFYYALGFA 102
Cdd:cd15831    4 QRFERLVAEGRRALAAGDPEEAARLLRAALALWRGPA--LADVRAGPVLEAEAARLEELRLRAL-------EARIEADLA 74

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 427987101 103 LAnqeDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQV 153
Cdd:cd15831   75 LG---RHRELVAELRALVAEHPLRERLHRQLMLALYRSGRQAEALRVYRRL 122

Name

Accession

Description

Interval

E-value

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

96-346

2.03e-35

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 129.85 E-value: 2.03e-35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  96 YYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQD 175
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 176 RPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRA 255
Cdd:COG2956   91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 256 VALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRARDLFRQANDAEG 335
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250

                        250
                 ....*....|.
gi 427987101 336 LQKAESALDGL 346
Cdd:COG2956  251 LADLLERKEGL 261

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

31-291

1.14e-34

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 127.92 E-value: 1.14e-34

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  31 QGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYR 110
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 111 GASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAI 190
Cdd:COG2956   94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 191 APNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAqAAIG 270
Cdd:COG2956  174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LALA 252

                        250       260
                 ....*....|....*....|.
gi 427987101 271 EVYINQEDYLRAIVAYRRLLE 291
Cdd:COG2956  253 DLLERKEGLEAALALLERQLR 273

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

71-323

2.18e-34

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 127.15 E-value: 2.18e-34

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  71 RQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAY 150
Cdd:COG2956   20 LNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 151 RQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAE 230
Cdd:COG2956  100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 231 VHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNpTAYYQLGVALKGR 310
Cdd:COG2956  180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERK 258

                        250
                 ....*....|...
gi 427987101 311 DRPQEAKEAFNRA 323
Cdd:COG2956  259 EGLEAALALLERQ 271

Spy

COG3914

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...

69-334

6.61e-30

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 120.48 E-value: 6.61e-30

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  69 QARQGNYAASAEAYRRAIALDNKNADFYYALGFAL---------ANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYR 139
Cdd:COG3914   11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALlllaalaeaAAAALLALAAGEAAAAAAALLLLAALLELAALLLQA 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 140 QGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLE 219
Cdd:COG3914   91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 220 RAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYlRAIVAYRRLLEITPNNPTA 299
Cdd:COG3914  171 RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDW-EVYDRFEELLAALARGPSE 249

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 427987101 300 YYQLGVALKGRDRPQEAKEAFNRARDLFRQANDAE 334
Cdd:COG3914  250 LSPFALLYLPDDDPAELLALARAWAQLVAAAAAPE 284

LapB

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...

28-259

7.65e-28

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 109.82 E-value: 7.65e-28

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  28 LLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQE 107
Cdd:COG2956   45 HLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEG 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 108 DYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQA 187
Cdd:COG2956  125 DWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERA 204

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 427987101 188 LAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPrNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQ 259
Cdd:COG2956  205 LEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALADLLERKEGLEAALALLERQLRRH 275

TPR

Tetratricopeptide (TPR) repeat [General function prediction only];

86-330

1.30e-27

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 108.56 E-value: 1.30e-27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  86 IALDNKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYE 165
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 166 SIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQN 245
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 246 EAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRARD 325
Cdd:COG0457  161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                 ....*
gi 427987101 326 LFRQA 330
Cdd:COG0457  241 YQYRA 245

TPR

Tetratricopeptide (TPR) repeat [General function prediction only];

121-347

5.17e-27

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 107.01 E-value: 5.17e-27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 121 QLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLK 200
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 201 LGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYL 280
Cdd:COG0457   82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 427987101 281 RAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRARDLFRQANDAEGLQKAESALDGLN 347
Cdd:COG0457  162 EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALA 228

TPR

Tetratricopeptide (TPR) repeat [General function prediction only];

57-292

1.49e-26

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 105.47 E-value: 1.49e-26

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  57 DNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTV 136
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 137 LYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIA 216
Cdd:COG0457   86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 427987101 217 SLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEI 292
Cdd:COG0457  166 LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALY 241

Spy

COG3914

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...

17-264

1.67e-26

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 110.47 E-value: 1.67e-26

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  17 AQASSDQELRDLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFY 96
Cdd:COG3914    2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  97 YALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDR 176
Cdd:COG3914   82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 177 PQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAV 256
Cdd:COG3914  162 LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLA 241


                 ....*...
gi 427987101 257 ALQPNLAE 264
Cdd:COG3914  242 ALARGPSE 249

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

38-316

5.58e-26

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 109.02 E-value: 5.58e-26

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   38 SGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYR 117
Cdd:TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  118 RSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNV 197
Cdd:TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  198 HLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQE 277
Cdd:TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 427987101  278 DYLRAIVAYRRLLEITPNNPTAYYqLGVALKGRDRPQEA 316
Cdd:TIGR02917 718 DYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEA 755

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

17-326

5.57e-25

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 105.94 E-value: 5.57e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   17 AQASSDQELRDLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFY 96
Cdd:TIGR02917 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVL 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   97 YALG--------FALANQE--------------------------DYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGD 142
Cdd:TIGR02917 231 LALAtilieageFEEAEKHadallkkapnsplahylkalvdfqkkNYEDARETLQDALKSAPEYLPALLLAGASEYQLGN 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  143 PAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAA 222
Cdd:TIGR02917 311 LEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKAT 390

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  223 ELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQ 302
Cdd:TIGR02917 391 ELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL 470

                         330       340
                  ....*....|....*....|....
gi 427987101  303 LGVALKGRDRPQEAKEAFNRARDL 326
Cdd:TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSI 494

TPR

Tetratricopeptide (TPR) repeat [General function prediction only];

28-259

3.34e-23

Tetratricopeptide (TPR) repeat [General function prediction only];

Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 96.61 E-value: 3.34e-23

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  28 LLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQE 107
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 108 DYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQA 187
Cdd:COG0457   91 RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKL 170

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 427987101 188 LAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQ 259
Cdd:COG0457  171 EAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

17-317

2.06e-22

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 98.62 E-value: 2.06e-22

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   17 AQASSDQELRDLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFY 96
Cdd:TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALAL 638

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   97 YALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDR 176
Cdd:TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  177 PQDALRSFQQALAIAPNSGNVhLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAV 256
Cdd:TIGR02917 719 YPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV 797

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  257 ALQPN-----------------------------LAEAQAAI----GEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQL 303
Cdd:TIGR02917 798 KKAPDnavvlnnlawlylelkdpraleyaeralkLAPNIPAIldtlGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877

                         330
                  ....*....|....
gi 427987101  304 GVALKGRDRPQEAK 317
Cdd:TIGR02917 878 ALALLATGRKAEAR 891

Spy

COG3914

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...

13-197

8.91e-22

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 96.22 E-value: 8.91e-22

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  13 AALVAQASSDQELRDLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKN 92
Cdd:COG3914   66 EAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDF 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  93 ADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYL 172
Cdd:COG3914  146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALR 225

                        170       180
                 ....*....|....*....|....*
gi 427987101 173 QQDRPQDALRSFQQALAIAPNSGNV 197
Cdd:COG3914  226 QACDWEVYDRFEELLAALARGPSEL 250

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

38-317

4.08e-21

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 94.77 E-value: 4.08e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   38 SGDLTGALAAYERAATLSQDNPR--IFSGIGYVQARQGNYAASAEayRRAIALDNKNADFYYALGFALANQEDYRGASDA 115
Cdd:TIGR02917 410 QGDPSEAIADLETAAQLDPELGRadLLLILSYLRSGQFDKALAAA--KKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  116 YRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSG 195
Cdd:TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI 567

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  196 NVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYIN 275
Cdd:TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAV 647

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 427987101  276 QEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAK 317
Cdd:TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

79-194

5.34e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 79.28 E-value: 5.34e-18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  79 AEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDA 158
Cdd:COG4235    3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 427987101 159 KNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNS 194
Cdd:COG4235   83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

38-334

6.23e-18

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 85.14 E-value: 6.23e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   38 SGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYR 117
Cdd:TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  118 RSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNV 197
Cdd:TIGR02917 218 KAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPA 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  198 HLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQE 277
Cdd:TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG 377

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 427987101  278 DYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRARDLFRQANDAE 334
Cdd:TIGR02917 378 DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD 434

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

215-339

7.52e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 78.51 E-value: 7.52e-18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 215 IASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITP 294
Cdd:COG4235    3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 427987101 295 NNPTAYYQLGVALKGRDRPQEAKEAFNRARDLFRQANDAEGLQKA 339
Cdd:COG4235   83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127

PRK11447

cellulose synthase subunit BcsC; Provisional

31-322

7.74e-18

cellulose synthase subunit BcsC; Provisional

Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 84.75 E-value: 7.74e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   31 QGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALD------NKNADFYYALGFALA 104
Cdd:PRK11447  275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDphssnrDKWESLLKVNRYWLL 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  105 NQE--------DYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYlQQDR 176
Cdd:PRK11447  355 IQQgdaalkanNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY-RQQS 433

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  177 PQDALrSFQQALAIApnsgnvhlklgvtqllmgnTQAGIASLERAAELEPRNaevhlQVGKVLQAQGQNEAALNSLRRAV 256
Cdd:PRK11447  434 PEKAL-AFIASLSAS-------------------QRRSIDDIERSLQNDRLA-----QQAEALENQGKWAQAAELQRQRL 488

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 427987101  257 ALQPN-------LAEAQAAIGEVYinqedylRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNR 322
Cdd:PRK11447  489 ALDPGsvwltyrLAQDLRQAGQRS-------QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT 554

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

197-326

1.20e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 78.31 E-value: 1.20e-17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 197 VHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQ 276
Cdd:COG4783    6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 427987101 277 EDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRARDL 326
Cdd:COG4783   86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

70-326

1.93e-17

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 83.59 E-value: 1.93e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   70 ARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQA 149
Cdd:TIGR02917 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  150 YRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNA 229
Cdd:TIGR02917 216 YRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYL 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  230 EVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKG 309
Cdd:TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLA 375

                         250
                  ....*....|....*..
gi 427987101  310 RDRPQEAKEAFNRARDL 326
Cdd:TIGR02917 376 LGDFEKAAEYLAKATEL 392

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

93-228

2.53e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.54 E-value: 2.53e-17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  93 ADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYL 172
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 427987101 173 QQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRN 228
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

22-160

3.52e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.15 E-value: 3.52e-17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  22 DQELRDLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGF 101
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 427987101 102 ALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKN 160
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

65-194

3.59e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.15 E-value: 3.59e-17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  65 IGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPA 144
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 427987101 145 GALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNS 194
Cdd:COG4783   90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

129-261

4.76e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 76.77 E-value: 4.76e-17

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 129 AHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLM 208
Cdd:COG4783    6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 427987101 209 GNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPN 261
Cdd:COG4783   86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

44-164

2.45e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 74.66 E-value: 2.45e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  44 ALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYRRSAQLD 123
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 427987101 124 PKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAY 164
Cdd:COG4235   82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

179-300

2.70e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 74.27 E-value: 2.70e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 179 DALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVAL 258
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 427987101 259 QPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAY 300
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

162-296

3.36e-16

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.46 E-value: 3.36e-16

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 162 QAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQA 241
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 427987101 242 QGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNN 296
Cdd:COG4783   85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

37-313

3.53e-15

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 76.66 E-value: 3.53e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   37 QSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAY 116
Cdd:TIGR02917 511 QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  117 RRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNsgN 196
Cdd:TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD--N 668

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  197 VHLKLGVTQLLM--GNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPN------LAEAQAA 268
Cdd:TIGR02917 669 TEAQIGLAQLLLaaKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSsqnaikLHRALLA 748

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 427987101  269 IG---------------------------EVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRP 313
Cdd:TIGR02917 749 SGntaeavktleawlkthpndavlrtalaELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP 820

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

12-343

1.38e-14

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 74.73 E-value: 1.38e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   12 PAALVAQASSDQELRDLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAI----- 86
Cdd:TIGR02917   9 CIALALSACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALslgyp 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   87 -----------------------------ALDNKNADFYYAL-GFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTV 136
Cdd:TIGR02917  89 knqvlpllarayllqgkfqqvldelpgktLLDDEGAAELLALrGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQL 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  137 LYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIA 216
Cdd:TIGR02917 169 ALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEK 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  217 SLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNN 296
Cdd:TIGR02917 249 HADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNS 328

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 427987101  297 PTAYYQLGVALKGRDRPQEAKEAFNRArdLFRQANDAEGLQKAESAL 343
Cdd:TIGR02917 329 HQARRLLASIQLRLGRVDEAIATLSPA--LGLDPDDPAALSLLGEAY 373

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

146-267

1.60e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 69.65 E-value: 1.60e-14

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 146 ALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELE 225
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 427987101 226 PRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQA 267
Cdd:COG4235   82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123

NlpI

COG4785

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

40-257

1.89e-14

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 71.48 E-value: 1.89e-14

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  40 DLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYRRS 119
Cdd:COG4785   20 SKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQA 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 120 AQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHL 199
Cdd:COG4785  100 LELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAL 179

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 427987101 200 KLGVTQLLMGNTQAGIASLEraaeleprnaevhlQVGKVLQAQGQNEAALNSLRRAVA 257
Cdd:COG4785  180 WLYLAERKLDPEKALALLLE--------------DWATAYLLQGDTEEARELFKLALA 223

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

66-323

3.19e-14

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.96 E-value: 3.19e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   66 GYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAG 145
Cdd:TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDE 347

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  146 ALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELE 225
Cdd:TIGR02917 348 AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD 427

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  226 ----------------------------------PRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGE 271
Cdd:TIGR02917 428 pelgradlllilsylrsgqfdkalaaakklekkqPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 427987101  272 VYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRA 323
Cdd:TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKA 559

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

114-233

1.62e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 66.57 E-value: 1.62e-13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 114 DAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPN 193
Cdd:COG4235    4 ARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPD 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 427987101 194 SGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHL 233
Cdd:COG4235   84 NPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123

NlpI

COG4785

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

210-326

1.49e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 66.09 E-value: 1.49e-12

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 210 NTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRL 289
Cdd:COG4785   54 AAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRA 133

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 427987101 290 LEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRARDL 326
Cdd:COG4785  134 LELDPDYAYAYLNRGIALYYLGRYELAIADLEKALEL 170

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

16-131

1.62e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 63.87 E-value: 1.62e-12

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  16 VAQASSDQELRDLLkqGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADF 95
Cdd:COG4235   10 LAANPNDAEGWLLL--GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 427987101  96 YYALGFALANQEDYRGASDAYRRSAQLDPKNINAHL 131
Cdd:COG4235   88 LYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123

PRK11447

cellulose synthase subunit BcsC; Provisional

28-322

1.17e-11

cellulose synthase subunit BcsC; Provisional

Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 65.87 E-value: 1.17e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   28 LLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKN-------ADFYY--- 97
Cdd:PRK11447  354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNtnavrglANLYRqqs 433

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   98 ---ALGF-----------------------------ALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAG 145
Cdd:PRK11447  434 pekALAFiaslsasqrrsiddierslqndrlaqqaeALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  146 ALQAYRQVTSL---DAKNWQAYesigSIYLQ-QDRPQDALRSFqQALAIAPNSGNVH---LKLGVTQLL--------MGN 210
Cdd:PRK11447  514 ADALMRRLAQQkpnDPEQVYAY----GLYLSgSDRDRAALAHL-NTLPRAQWNSNIQelaQRLQSDQVLetanrlrdSGK 588

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  211 TQAGIASLERaaelEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLL 290
Cdd:PRK11447  589 EAEAEALLRQ----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664

                         330       340       350
                  ....*....|....*....|....*....|..
gi 427987101  291 EITPNNPTAYYQLGVALKGRDRPQEAKEAFNR 322
Cdd:PRK11447  665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNR 696

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

68-162

1.53e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.18 E-value: 1.53e-11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  68 VQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGAsDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGAL 147
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|....*
gi 427987101 148 QAYRQVTSLDAKNWQ 162
Cdd:COG3063   80 AYLERALELDPSALR 94

ACL4-like

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

140-328

3.29e-11

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 63.42 E-value: 3.29e-11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 140 QGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNV-HLKLGvtQLLMGN-----TQA 213
Cdd:cd24142   13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEkYLYLG--QLSGGEealqyYEK 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 214 GIASLERaaeleprnaevhlQVGKVLQAQGQNEAALNSLRRavalqpNLAEAQAAIGEVYINQ-----------EDYLra 282
Cdd:cd24142   91 GIEILEE-------------ELQALQAASAEAEEEAEELKR------KLSSALCALAEIYMTDlcdepdaeqrcEELI-- 149

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 427987101 283 ivayRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRARDLFR 328
Cdd:cd24142  150 ----TKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELWK 191

BepA

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...

227-326

3.78e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.21 E-value: 3.78e-11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 227 RNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVA 306
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                         90       100
                 ....*....|....*....|
gi 427987101 307 LKGRDRPQEAKEAFNRARDL 326
Cdd:COG4783   82 LLKAGDYDEALALLEKALKL 101

PEP_TPR_lipo

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...

25-257

5.73e-11

Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 63.95 E-value: 5.73e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   25 LRDLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDnKNADFYYALGFALA 104
Cdd:TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-PSSQNAIKLHRALL 747

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  105 NQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQdALRSF 184
Cdd:TIGR02917 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYA 826

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 427987101  185 QQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVA 257
Cdd:TIGR02917 827 ERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899

NlpI

COG4785

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

98-265

7.33e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 61.08 E-value: 7.33e-11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  98 ALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLdAKNWQAYESIGSIYLQQDRP 177
Cdd:COG4785   11 ALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDY 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 178 QDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVA 257
Cdd:COG4785   90 DLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALE 169


                 ....*...
gi 427987101 258 LQPNLAEA 265
Cdd:COG4785  170 LDPNDPER 177

3a0801s09

TIGR00990

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...

39-269

9.82e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]

Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 62.69 E-value: 9.82e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   39 GDLTGALAAYERAATLsqdNPRIFSGIGYVQARQGNYAASAEAYR---RAIALDNKNADFYYALGFALANQEDYRGASDA 115
Cdd:TIGR00990 345 GKHLEALADLSKSIEL---DPRVTQSYIKRASMNLELGDPDKAEEdfdKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKD 421

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  116 YRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIA---- 191
Cdd:TIGR00990 422 YQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEketk 501

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  192 PNSGNVHLKLGVTQLLMGNTQAGIAS---LERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAA 268
Cdd:TIGR00990 502 PMYMNVLPLINKALALFQWKQDFIEAenlCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQA 581


                  .
gi 427987101  269 I 269
Cdd:TIGR00990 582 I 582

PGA_TPR_OMP

TIGR03939

poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA; Members of this protein family are the ...

13-201

1.33e-10

poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA; Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats.

Pssm-ID: 274868 [Multi-domain] Cd Length: 800 Bit Score: 62.76 E-value: 1.33e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   13 AALVAQASSDQELRD-LLKQGRElvqsGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAiALDNK 91
Cdd:TIGR03939  10 APAWANASPADEKYDqLIIQARA----GDTAPALSGLQQLYRKTPLDRKVLDDLLAVLSWAGRDKEAIDVCERY-SPVGL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   92 NADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIY 171
Cdd:TIGR03939  85 PARVLEALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARFPTDAARYEALAYVL 164

                         170       180       190
                  ....*....|....*....|....*....|
gi 427987101  172 LQQDRPQDALRSFQQALAIAPNSGNVHLKL 201
Cdd:TIGR03939 165 RAAEDHLDALQAWQQALTLEPDNPEAALEL 194

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

102-193

2.28e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.72 E-value: 2.28e-10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 102 ALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQaYRQVTSLDAKNWQAYESIGSIYLQQDRPQDAL 181
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|..
gi 427987101 182 RSFQQALAIAPN 193
Cdd:COG3063   80 AYLERALELDPS 91

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

238-330

3.13e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.33 E-value: 3.13e-10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 238 VLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIvAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAK 317
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|...
gi 427987101 318 EAFNRARDLFRQA 330
Cdd:COG3063   80 AYLERALELDPSA 92

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

170-264

4.04e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.95 E-value: 4.04e-10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 170 IYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIAsLERAAELEPRNAEVHLQVGKVLQAQGQNEAAL 249
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|....*
gi 427987101 250 NSLRRAVALQPNLAE 264
Cdd:COG3063   80 AYLERALELDPSALR 94

LcrH_SycD

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...

97-195

5.67e-10

Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 56.92 E-value: 5.67e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   97 YALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDR 176
Cdd:TIGR02552  21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100

                          90
                  ....*....|....*....
gi 427987101  177 PQDALRSFQQALAIAPNSG 195
Cdd:TIGR02552 101 PESALKALDLAIEICGENP 119

NrfG

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...

247-326

6.00e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];

Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.55 E-value: 6.00e-10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 247 AALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRARDL 326
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

type_IV_pilW

TIGR02521

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...

90-265

8.98e-10

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 58.12 E-value: 8.98e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   90 NKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGS 169
Cdd:TIGR02521  28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  170 IYLQQDRPQDALRSFQQALAiAPNSGN---VHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNE 246
Cdd:TIGR02521 108 FLCQQGKYEQAMQQFEQAIE-DPLYPQparSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186

                         170
                  ....*....|....*....
gi 427987101  247 AALNSLRRAVALQPNLAEA 265
Cdd:TIGR02521 187 DARAYLERYQQTYNQTAES 205

3a0801s09

TIGR00990

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...

107-292

2.06e-09

Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 58.84 E-value: 2.06e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  107 EDYRGASDAYRRsaQLDPKNINAHLGL-----GTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDAL 181
Cdd:TIGR00990 308 ESYEEAARAFEK--ALDLGKLGEKEAIalnlrGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAE 385

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  182 RSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPN 261
Cdd:TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465

                         170       180       190
                  ....*....|....*....|....*....|.
gi 427987101  262 LAEAQAAIGEVYINQEDYLRAIVAYRRLLEI 292
Cdd:TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

35-125

2.31e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.02 E-value: 2.31e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  35 LVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAAsAEAYRRAIALDNKNADFYYALGFALANQEDYRGASD 114
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDE-AIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                         90
                 ....*....|.
gi 427987101 115 AYRRSAQLDPK 125
Cdd:COG3063   81 YLERALELDPS 91

ACL4-like

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

27-330

2.86e-09

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 57.64 E-value: 2.86e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  27 DLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALD-NKNADFYYALGFALAN 105
Cdd:cd24142    2 ELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDpDGGYEKYLYLGQLSGG 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 106 QEdyrgASDAYRRSAQLdpkninahlgLGTVLYRQGDPAGALQAYRQVTSLDAKNwqAYESIGSIYLqqdrpqdalrsfq 185
Cdd:cd24142   82 EE----ALQYYEKGIEI----------LEEELQALQAASAEAEEEAEELKRKLSS--ALCALAEIYM------------- 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 186 qalaiapnsgnvhlklgvTQLLM--GNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLA 263
Cdd:cd24142  133 ------------------TDLCDepDAEQRCEELITKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELWKDLK 194

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 264 EAQAAIGEVYINQEDYL--------------------RAIVAYRRLLEITPNNPTAYYQLGVA--LKGRDRPQEAKEAFN 321
Cdd:cd24142  195 EEDEEEAEEDEAEEEDVpsyefrislakllielemyeEALEVLEQLLDEDDEDVEVWYLLGWAyyLLGEKEQEEAAELLR 274


                 ....*....
gi 427987101 322 RARDLFRQA 330
Cdd:cd24142  275 DARELLEKA 283

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

8-157

4.49e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.97 E-value: 4.49e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   8 AAPQPAALVAQASSDQELRDLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIA 87
Cdd:COG5010    3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  88 LDNKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLD 157
Cdd:COG5010   83 LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

44-192

2.09e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.04 E-value: 2.09e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  44 ALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYRRSAQLD 123
Cdd:COG5010    5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 427987101 124 PKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAP 192
Cdd:COG5010   85 PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153

3a0801s09

TIGR00990

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...

75-328

2.70e-08

Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 55.38 E-value: 2.70e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   75 YAASAEAYRRAIALDNKNADFYYAL---GFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYR 151
Cdd:TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALnlrGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFD 389

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  152 QVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEV 231
Cdd:TIGR00990 390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDV 469

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  232 HLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVyINQ--------EDYLRAIVAYRRLLEITPNNPTAYYQL 303
Cdd:TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL-INKalalfqwkQDFIEAENLCEKALIIDPECDIAVATM 548

                         250       260
                  ....*....|....*....|....*
gi 427987101  304 GVALKGRDRPQEAKEAFNRARDLFR 328
Cdd:TIGR00990 549 AQLLLQQGDVDEALKLFERAAELAR 573

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

75-226

3.69e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 52.27 E-value: 3.69e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  75 YAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVT 154
Cdd:COG5010    2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 427987101 155 SLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEP 226
Cdd:COG5010   82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

112-260

7.80e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.11 E-value: 7.80e-08

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 112 ASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIA 191
Cdd:COG5010    5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 427987101 192 PNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQP 260
Cdd:COG5010   85 PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

176-326

1.34e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 50.34 E-value: 1.34e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 176 RPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRA 255
Cdd:COG5010    1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 427987101 256 VALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRARDL 326
Cdd:COG5010   81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

8-124

1.94e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.96 E-value: 1.94e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   8 AAPQPAALVAQASSDQELRDLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIA 87
Cdd:COG5010   37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALA 116

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 427987101  88 LDNKNADFYYALGFALANQEDYRGASDAYRRSAQLDP 124
Cdd:COG5010  117 LSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153

gliding_GltE

NF033758

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...

50-191

2.04e-07

Pssm-ID: 468174 [Multi-domain] Cd Length: 411 Bit Score: 52.13 E-value: 2.04e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  50 RAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINA 129
Cdd:NF033758 213 RAVKIDQNDPELHHTVGLILLQEGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLRRILQADGKNAAA 292

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 427987101 130 HLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSI-YLQQDRPQDALRSFQQALAIA 191
Cdd:NF033758 293 HLNLGVAYKGQGQYDKAMQEYDEAEKLDPELAAIYLNRAIIlHRVKDAPERAVELYKKYIAMA 355

COG4700

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];

171-303

4.76e-07

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];

Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 50.27 E-value: 4.76e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 171 YLQQDRPQDALRSFQQALA-IAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEP--RNAEVHLQVGKVLQAQGQNEA 247
Cdd:COG4700   99 LLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPdfKSSDAHLLYARALEALGDLEA 178

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 427987101 248 ALNSLRRAVALQPNlAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQL 303
Cdd:COG4700  179 AEAELEALARRYSG-PEARYRYAKFLARQGRTAEAKELLEEILDEAKHMPKHYRRL 233

type_IV_pilW

TIGR02521

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...

229-323

5.88e-07

Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 49.64 E-value: 5.88e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  229 AEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALK 308
Cdd:TIGR02521  31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110

                          90
                  ....*....|....*
gi 427987101  309 GRDRPQEAKEAFNRA 323
Cdd:TIGR02521 111 QQGKYEQAMQQFEQA 125

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

71-153

6.72e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 47.29 E-value: 6.72e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  71 RQGNYAASAEAYRRAIAL---DNKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNI---NAHLGLGTVLYRQGDPA 144
Cdd:COG1729    5 KAGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYD 84


                 ....*....
gi 427987101 145 GALQAYRQV 153
Cdd:COG1729   85 KARATLEEL 93

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

242-327

6.92e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 47.29 E-value: 6.92e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 242 QGQNEAALNSLRRAVALQPN---LAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNN---PTAYYQLGVALKGRDRPQE 315
Cdd:COG1729    6 AGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDYDK 85

                         90
                 ....*....|..
gi 427987101 316 AKEAFNRARDLF 327
Cdd:COG1729   86 ARATLEELIKKY 97

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

171-268

8.82e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.91 E-value: 8.82e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 171 YLQQDRPQDALRSFQQALAIAPNS---GNVHLKLGVTQLLMGNTQAGIASLERAAELEPRN---AEVHLQVGKVLQAQGQ 244
Cdd:COG1729    3 LLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGD 82

                         90       100
                 ....*....|....*....|....
gi 427987101 245 NEAALNSLRRAVALQPNLAEAQAA 268
Cdd:COG1729   83 YDKARATLEELIKKYPDSEAAKEA 106

TadD

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...

146-294

1.41e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];

Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.65 E-value: 1.41e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 146 ALQAYRQVTSLDAKNWQAYESIGSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELE 225
Cdd:COG5010    5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 427987101 226 PRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITP 294
Cdd:COG5010   85 PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153

COG4700

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];

177-347

3.57e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];

Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 47.57 E-value: 3.57e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 177 PQDALRSFQQALAIAPNSGNvHLKLGVTQLLMGNTQAGIASLERAAE-LEPRNAEVHLQVGKVLQAQGQNEAALNSLRRA 255
Cdd:COG4700   72 PGRELRELEKALEFADTVQN-RVRLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKL 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 256 VALQPNL--AEAQAAIGEVYINQEDYLRAIVAYRRLLEITPnNPTAYYQLGVALKGRDRPQEAKEAFNRARDLFRQAN-- 331
Cdd:COG4700  151 IAKNPDFksSDAHLLYARALEALGDLEAAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEEILDEAKHMPkh 229

                        170       180
                 ....*....|....*....|
gi 427987101 332 ----DAEGLQKAESALDGLN 347
Cdd:COG4700  230 yrrlNREWIREAKKLLKSLR 249

PRK09782

bacteriophage N4 receptor, outer membrane subunit; Provisional

98-295

6.01e-06

bacteriophage N4 receptor, outer membrane subunit; Provisional

Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 47.99 E-value: 6.01e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  98 ALGFALANQEDYRGASDAYRRSAQLDPKNiNAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYESIGSIYLQQDRP 177
Cdd:PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQP 592

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 178 QDALRSFQQALAIAPNSGNVHLKLGVTQlLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVA 257
Cdd:PRK09782 593 ELALNDLTRSLNIAPSANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 427987101 258 LQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPN 295
Cdd:PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709

TPR_11

TPR repeat;

66-106

8.25e-06

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 42.07 E-value: 8.25e-06

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 427987101   66 GYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQ 106
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41

LcrH_SycD

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...

64-160

9.34e-06

Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 44.59 E-value: 9.34e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101   64 GIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDP 143
Cdd:TIGR02552  22 ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEP 101

                          90
                  ....*....|....*..
gi 427987101  144 AGALQAYRQVTSLDAKN 160
Cdd:TIGR02552 102 ESALKALDLAIEICGEN 118

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

137-231

1.70e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.44 E-value: 1.70e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 137 LYRQGDPAGALQAYRQVTSLDAKNWQAYES---IGSIYLQQDRPQDALRSFQQALAIAPNS---GNVHLKLGVTQLLMGN 210
Cdd:COG1729    3 LLKAGDYDEAIAAFKAFLKRYPNSPLAPDAlywLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGD 82

                         90       100
                 ....*....|....*....|.
gi 427987101 211 TQAGIASLERAAELEPRNAEV 231
Cdd:COG1729   83 YDKARATLEELIKKYPDSEAA 103

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

101-194

2.03e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.06 E-value: 2.03e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 101 FALANQEDYRGASDAYRRSAQLDPKNI---NAHLGLGTVLYRQGDPAGALQAYRQVTSLDAKNWQAYES---IGSIYLQQ 174
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDAllkLGLSYLEL 80

                         90       100
                 ....*....|....*....|
gi 427987101 175 DRPQDALRSFQQALAIAPNS 194
Cdd:COG1729   81 GDYDKARATLEELIKKYPDS 100

COG4700

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];

32-165

2.11e-05

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];

Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 45.26 E-value: 2.11e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  32 GRELVQSGDLTGALAAYERAAT-LSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIAL--DNKNADFYYALGFALANQED 108
Cdd:COG4700   96 ADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKnpDFKSSDAHLLYARALEALGD 175

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 427987101 109 YRGASDAYRRSAQLDPkNINAHLGLGTVLYRQGDPAGALQAYRQVTSlDAKNWQAYE 165
Cdd:COG4700  176 LEAAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEEILD-EAKHMPKHY 230

TPR_11

TPR repeat;

32-73

2.20e-05

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.92 E-value: 2.20e-05

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 427987101   32 GRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQG 73
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42

LcrH_SycD

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...

241-346

2.44e-05

Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 43.44 E-value: 2.44e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  241 AQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAF 320
Cdd:TIGR02552  29 QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKAL 108

                          90       100
                  ....*....|....*....|....*....
gi 427987101  321 NRArdLFRQANDAEGL---QKAESALDGL 346
Cdd:TIGR02552 109 DLA--IEICGENPEYSelkERAEAMLESL 135

pgaA

PRK10049

outer membrane protein PgaA; Provisional

80-197

3.07e-05

outer membrane protein PgaA; Provisional

Pssm-ID: 236644 [Multi-domain] Cd Length: 765 Bit Score: 45.86 E-value: 3.07e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  80 EAYRRAIALDnknADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSL--D 157
Cdd:PRK10049  39 NRYRVHMQLP---ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGapD 115

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 427987101 158 AKNWQAyesIGSIYLQQDRPQDALRSFQQALAIAPNSGNV 197
Cdd:PRK10049 116 KANLLA---LAYVYKRAGRHWDELRAMTQALPRAPQTQQY 152

TPR_11

TPR repeat;

270-307

8.55e-05

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.38 E-value: 8.55e-05

                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 427987101  270 GEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVAL 307
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAY 38

PRK11447

cellulose synthase subunit BcsC; Provisional

234-297

8.69e-05

cellulose synthase subunit BcsC; Provisional

Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 44.30 E-value: 8.69e-05

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 427987101  234 QVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNP 297
Cdd:PRK11447  274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS 337

HemYx

COG3071

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...

171-295

2.84e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];

Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 42.20 E-value: 2.84e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 171 YLQQDRPQDALRSFQQALAIAPNSGNVHLklgVTQLLMGNTQAGIASLERAAELEPRNAEVHLQVGKVLQAQGQNEAALN 250
Cdd:COG3071  203 LIALGDHDEAERLLREALKRQWDPRLVRL---YGRLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKARE 279

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 427987101 251 SLRRAVALQPNlAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPN 295
Cdd:COG3071  280 YLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323

ACL4-like

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...

239-347

4.40e-04

Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 41.46 E-value: 4.40e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 239 LQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPN-NPTAYYQLGVALKGrdrpQEAK 317
Cdd:cd24142   10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSGG----EEAL 85

                         90       100       110
                 ....*....|....*....|....*....|
gi 427987101 318 EAFNRARDLFRQAndAEGLQKAESALDGLN 347
Cdd:cd24142   86 QYYEKGIEILEEE--LQALQAASAEAEEEA 113

TPR_9

pfam13371

Tetratricopeptide repeat;

269-334

4.84e-04

Tetratricopeptide repeat;

Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 38.35 E-value: 4.84e-04

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 427987101  269 IGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRARDLFRQANDAE 334
Cdd:pfam13371   1 LKAIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDAE 66

PRK11189

lipoprotein NlpI; Provisional

254-322

5.93e-04

lipoprotein NlpI; Provisional

Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 41.03 E-value: 5.93e-04

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 427987101 254 RAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNR 322
Cdd:PRK11189  89 QALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLA 157

TPR_11

TPR repeat;

236-276

5.93e-04

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.07 E-value: 5.93e-04

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 427987101  236 GKVLQAQGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQ 276
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41

PRK11788

tetratricopeptide repeat protein; Provisional

171-263

6.68e-04

tetratricopeptide repeat protein; Provisional

Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 41.33 E-value: 6.68e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 171 YLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPrnAEVHLQVGKVL---QAQGQNEA 247
Cdd:PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP--EYLSEVLPKLMecyQALGDEAE 267

                         90
                 ....*....|....*.
gi 427987101 248 ALNSLRRAVALQPNLA 263
Cdd:PRK11788 268 GLEFLRRALEEYPGAD 283

PRK15359

type III secretion system chaperone protein SscB; Provisional

242-346

8.63e-04

type III secretion system chaperone protein SscB; Provisional

Pssm-ID: 185257 [Multi-domain] Cd Length: 144 Bit Score: 39.21 E-value: 8.63e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 242 QGQNEAALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFN 321
Cdd:PRK15359  37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ 116

                         90       100
                 ....*....|....*....|....*.
gi 427987101 322 RARDL-FRQANDAEGLQKAESALDGL 346
Cdd:PRK15359 117 TAIKMsYADASWSEIRQNAQIMVDTL 142

HemYx

COG3071

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...

168-289

1.06e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];

Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 40.28 E-value: 1.06e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 168 GSIYLQQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIASLERAAELEPRNAE-VHLQVGKVLQAQGQNE 246
Cdd:COG3071   23 GLLALAEGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELaVLLTRAELLLDQGQAE 102

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 427987101 247 AALNSLRRAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRL 289
Cdd:COG3071  103 QALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPAL 145

HemYx

COG3071

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...

72-323

1.17e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];

Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 40.28 E-value: 1.17e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  72 QGNYAASAEAYRRAIALDNKNADFYYALGFALANQEDYRGASDAYRRSAQLDPKNINA-HLGLGTVLYRQGDPAGALQAY 150
Cdd:COG3071   29 EGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQAEQALATL 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 151 RQVTSLDAKNWQAYESIGSIYLQQDRPQDA---LRSFQQALAIAPNSGNVHLKLGVTQLL---MGNTQAGIASLERAAEL 224
Cdd:COG3071  109 EALRAGAPRHPQVLRLLLQAYRQLGDWEELlelLPALRKHKALSAEEAQALERRAYLGLLrqaARDAEALKALWKALPRA 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 225 EPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAaIGEvyINQEDYLRAIVAYRRLLEITPNNPTAYYQLG 304
Cdd:COG3071  189 ERRDPELAAAYARALIALGDHDEAERLLREALKRQWDPRLVRL-YGR--LQGGDPAKQLKRAEKWLKKHPNDPDLLLALG 265

                        250
                 ....*....|....*....
gi 427987101 305 VALKGRDRPQEAKEAFNRA 323
Cdd:COG3071  266 RLCLRNQLWGKAREYLEAA 284

TPR_11

TPR repeat;

100-141

1.88e-03

TPR repeat;

Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 35.53 E-value: 1.88e-03

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 427987101  100 GFALANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQG 141
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42

TPR

smart00028

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...

161-193

2.79e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 2.79e-03

                           10        20        30
                   ....*....|....*....|....*....|...
gi 427987101   161 WQAYESIGSIYLQQDRPQDALRSFQQALAIAPN 193
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33

CpoB

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...

33-129

3.52e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 3.52e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  33 RELVQSGDLTGALAAYERAATLSQDN---PRIFSGIGYVQARQGNYAASAEAYRRAIAL---DNKNADFYYALGFALANQ 106
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLEL 80

                         90       100
                 ....*....|....*....|...
gi 427987101 107 EDYRGASDAYRRSAQLDPKNINA 129
Cdd:COG1729   81 GDYDKARATLEELIKKYPDSEAA 103

PilF

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

272-333

3.76e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];

Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.30 E-value: 3.76e-03

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 427987101 272 VYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAkEAFNRARDLFRQANDA 333
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEA 61

BamD

COG4105

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...

171-347

3.89e-03

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 38.32 E-value: 3.89e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 171 YLQQDRPQDALRSFQQALAIAPNS---GNVHLKLGVTQLLMGNTQAGIASLERAAELEPRN---AEVHLQVGKVLQAQGQ 244
Cdd:COG4105   42 ALEKGDYEKAIKLFEELEPRYPGSpyaEQAQLMLAYAYYKQGDYEEAIAAADRFIKLYPNSpnaDYAYYLRGLSYYEQSP 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 245 N--------EAALNSLRRAVALQPN-----------------LAEAQAAIGEVYINQEDYLRAIVAYRRLLEI---TPNN 296
Cdd:COG4105  122 DsdrdqtstRKAIEAFQELINRYPDseyaedakkridelrdkLARKELEVARYYLKRGAYVAAINRFQNVLEDypdTPAV 201

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 427987101 297 PTAYYQLGVALKGRDRPQEAKEAfnrARDLFRQANDAEGLQKAESALDGLN 347
Cdd:COG4105  202 EEALYLLVEAYYALGRYDEAQDA---AAVLGKNYPDSPYLKDAEKLLKKIG 249

PRK12370

HilA/EilA family virulence transcriptional regulator;

146-265

4.36e-03

HilA/EilA family virulence transcriptional regulator;

Pssm-ID: 237080 [Multi-domain] Cd Length: 553 Bit Score: 38.68 E-value: 4.36e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 146 ALQAYRQVTSLDAKNWQAYESIGSIYL---------QQDRPQDALRSFQQALAIAPNSGNVHLKLGVTQLLMGNTQAGIA 216
Cdd:PRK12370 280 ALKLLTQCVNMSPNSIAPYCALAECYLsmaqmgifdKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSL 359

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 427987101 217 SLERAAELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEA 265
Cdd:PRK12370 360 LFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA 408

tol_pal_ybgF

TIGR02795

tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...

162-268

5.68e-03

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 36.10 E-value: 5.68e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  162 QAYESIGSIYLQQDRPQDALRSFQQALAIAPNS---GNVHLKLGVTQLLMGNTQAGIASLERAAELEP---RNAEVHLQV 235
Cdd:TIGR02795   1 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKStyaPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPkspKAPDALLKL 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 427987101  236 GKVLQAQGQNEAALNSLRRAVALQPNLAEAQAA 268
Cdd:TIGR02795  81 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 113

BTAD

smart01043

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...

23-156

6.06e-03

Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 36.90 E-value: 6.06e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101    23 QELRDLLKQGRELvQSGDLTGALAAYERAATLSQDNPriFSGIGYvqarqgnyAASAEAYRRAiaLDNKNADFYYALGFA 102
Cdd:smart01043   4 DRFERLVAAARAA-LAADPEAALALLEAALALYRGPL--LADVPD--------EDWAEAERER--LRELRLEALEALAEA 70

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 427987101   103 LANQEDYRGASDAYRRSAQLDPKNINAHLGLGTVLYRQGDPAGALQAYRQVTSL 156
Cdd:smart01043  71 LLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRL 124

BamD

COG4105

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...

223-326

6.28e-03

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 37.94 E-value: 6.28e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101 223 ELEPRNAEVHLQVGKVLQAQGQNEAALNSLRRAVALQPNLAEAQAA---IGEVYINQEDYLRAIVAYRRLLEITPNNP-- 297
Cdd:COG4105   26 ALKSWDAEELYEEAKEALEKGDYEKAIKLFEELEPRYPGSPYAEQAqlmLAYAYYKQGDYEEAIAAADRFIKLYPNSPna 105

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 427987101 298 -TAYYQLGVALKGRDR-----PQEAKEAFNRARDL 326
Cdd:COG4105  106 dYAYYLRGLSYYEQSPdsdrdQTSTRKAIEAFQEL 140

BTAD

smart01043

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...

254-329

6.47e-03

Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 36.51 E-value: 6.47e-03

                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 427987101   254 RAVALQPNLAEAQAAIGEVYINQEDYLRAIVAYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKEAFNRARDLFRQ 329
Cdd:smart01043  52 ERERLRELRLEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRLLAD 127

PLN03088

SGT1, suppressor of G2 allele of SKP1; Provisional

27-124

7.67e-03

SGT1, suppressor of G2 allele of SKP1; Provisional

Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 37.84 E-value: 7.67e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 427987101  27 DLLKQGRELVQSGDLTGALAAYERAATLSQDNPRIFSGIGYVQARQGNYAASAEAYRRAIALDNKNADFYYALGFALANQ 106
Cdd:PLN03088   4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83

                         90
                 ....*....|....*...
gi 427987101 107 EDYRGASDAYRRSAQLDP 124
Cdd:PLN03088  84 EEYQTAKAALEKGASLAP 101

TPR_17

pfam13431

Tetratricopeptide repeat;

285-318

7.93e-03

Tetratricopeptide repeat;

Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 33.67 E-value: 7.93e-03

                          10        20        30
                  ....*....|....*....|....*....|....
gi 427987101  285 AYRRLLEITPNNPTAYYQLGVALKGRDRPQEAKE 318
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34

LcrH_SycD