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Conserved domains on  [gi|446167960|ref|WP_000245815|]
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MULTISPECIES: type III secretion system LEE needle protein cochaperone EscG [Enterobacteriaceae]

Protein Classification

EscG/YscG/SsaH family type III secretion system needle protein co-chaperone( domain architecture ID 10020794)

EscG/YscG/SsaH family type III secretion system needle protein co-chaperone may prevent the polymerization of needle subunits within the bacterial cell

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
type_III_ssaH TIGR02498
type III secretion system protein, SsaH family; This family describes a small protein, always ...
 3-82 1.12e-37

type III secretion system protein, SsaH family; This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein. [Cellular processes, Pathogenesis]


:

Pssm-ID: 131550  Cd Length: 79  Bit Score: 121.08  E-value: 1.12e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446167960   3 NDISANKILVWAAVAAANHKLPKYAEAILNVFPQIIPDKKDIAHLEFIILFGLNRKNDAIKALEGcMDDESSQLLYSLVH 82
Cdd:TIGR02498  1 LDTDANKLVVEAALAAVNHSLPKEAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLEN-MDDEEAQLLRSLVN 79
 
Name Accession Description Interval E-value
type_III_ssaH TIGR02498
type III secretion system protein, SsaH family; This family describes a small protein, always ...
 3-82 1.12e-37

type III secretion system protein, SsaH family; This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein. [Cellular processes, Pathogenesis]


Pssm-ID: 131550  Cd Length: 79  Bit Score: 121.08  E-value: 1.12e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446167960   3 NDISANKILVWAAVAAANHKLPKYAEAILNVFPQIIPDKKDIAHLEFIILFGLNRKNDAIKALEGcMDDESSQLLYSLVH 82
Cdd:TIGR02498  1 LDTDANKLVVEAALAAVNHSLPKEAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLEN-MDDEEAQLLRSLVN 79
DUF1039 pfam06287
Protein of unknown function (DUF1039); This family consists of several hypothetical bacterial ...
 16-77 2.64e-09

Protein of unknown function (DUF1039); This family consists of several hypothetical bacterial proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unknown.


Pssm-ID: 428866  Cd Length: 65  Bit Score: 48.59  E-value: 2.64e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446167960  16 VAAANHKLPKYAEAILNVFPQIIPDKKDIAHLEFIILFGLNRKNDAIKALEGCMDDESSQLL 77
Cdd:pfam06287  1 LAGVNHGLYKEAHAILLALPHLIPDTHVRLICEALLLFGLGEPEKATSLLSDSHSEEAQMLR 62
 
Name Accession Description Interval E-value
type_III_ssaH TIGR02498
type III secretion system protein, SsaH family; This family describes a small protein, always ...
 3-82 1.12e-37

type III secretion system protein, SsaH family; This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein. [Cellular processes, Pathogenesis]


Pssm-ID: 131550  Cd Length: 79  Bit Score: 121.08  E-value: 1.12e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446167960   3 NDISANKILVWAAVAAANHKLPKYAEAILNVFPQIIPDKKDIAHLEFIILFGLNRKNDAIKALEGcMDDESSQLLYSLVH 82
Cdd:TIGR02498  1 LDTDANKLVVEAALAAVNHSLPKEAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLEN-MDDEEAQLLRSLVN 79
DUF1039 pfam06287
Protein of unknown function (DUF1039); This family consists of several hypothetical bacterial ...
 16-77 2.64e-09

Protein of unknown function (DUF1039); This family consists of several hypothetical bacterial proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unknown.


Pssm-ID: 428866  Cd Length: 65  Bit Score: 48.59  E-value: 2.64e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446167960  16 VAAANHKLPKYAEAILNVFPQIIPDKKDIAHLEFIILFGLNRKNDAIKALEGCMDDESSQLL 77
Cdd:pfam06287  1 LAGVNHGLYKEAHAILLALPHLIPDTHVRLICEALLLFGLGEPEKATSLLSDSHSEEAQMLR 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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