NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|45382679|ref|NP_990805|]
View 

myosin-10 [Gallus gallus]

Protein Classification

myosin-10( domain architecture ID 12036895)

myosin-10 (myosin heavy chain 10 or MYH10) is a class II (conventional) non-muscle myosin, which contains two heavy chains made up of the motor/head (N-terminal) and coiled-coil tail (C-terminal) domains; the head ATPase activity and functions as a molecular motor, utilizing ATP hydrolysis to generate directed movement toward the plus end along actin filaments

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
879-1959 0e+00

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


:

Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 1513.53  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    879 TRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDL 958
Cdd:pfam01576    1 TRQEEEMQAKEEELQKVKEKQQKAESELKELEKKHQQLCEEKNILAEQLQAETELFAEAEEMRARLAARKQELEEILHEL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    959 ESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDR 1038
Cdd:pfam01576   81 EARLEEEEERSQQLQNEKKKMQQHIQDLEEQLEEEEAARQKLQLEKVTTEAKIKKMEEDILLLEDQNNKLQKERKLLEER 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1039 IAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAK 1118
Cdd:pfam01576  161 ISEFTSNLAEEEEKSKSLNKLKNKHEAMISDLEDRLKKEEKGRQELEKAKRKLEGESSDLQEQIAELQAQIAELRAQLAK 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1119 KEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQE 1198
Cdd:pfam01576  241 KEEELQAALARLEEETAQKNAALKKLRELEAQLSELQEDLESERAARAKAEKQRRDLGEELEALKTELEDTLDTTAAQQE 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1199 LRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVK 1278
Cdd:pfam01576  321 LRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKASLEKAKQALESENAELQAELRSLQQAK 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1279 AESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEE 1358
Cdd:pfam01576  401 QDSEHKRKKLEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1359 TRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQR 1438
Cdd:pfam01576  481 TRQKLNLSSRLRQLEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGRKRLQRELEALTQR 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1439 LEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALS 1518
Cdd:pfam01576  561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETKALS 640
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1519 LARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEV 1598
Cdd:pfam01576  641 LARALEEALDAKEELERQNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEV 720
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1599 NMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQL 1678
Cdd:pfam01576  721 NMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIEAANKGRDEAVKQL 800
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1679 RKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSAL 1758
Cdd:pfam01576  801 KKLQAQMKDLQRELDEARASRDEIFAQSKESEKKLKSLEAELLQLQEDLAAAERARRQAQQERDELAEEIASGNSGKSAL 880
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1759 LDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEGS 1838
Cdd:pfam01576  881 LDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKLTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGT 960
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1839 VKSKFKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLKEVFMQVEDERRHADQYKEQMEKANARMKQLKRQLE 1918
Cdd:pfam01576  961 VKSKYKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRNADQYKDQAEKGNSRLKQLKRQLE 1040
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|.
gi 45382679   1919 EAEEEATRANASRRKLQRELDDATEANEGLSREVSTLKNRL 1959
Cdd:pfam01576 1041 EAEEEASRANAARRKLQRELDDATESAEAMNREVTTLRSKL 1081
MYSc_Myh10 cd14920
class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy ...
99-802 0e+00

class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy chain 10 (also called NMMHCB). Mutations in this gene have been associated with May-Hegglin anomaly and developmental defects in brain and heart. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


:

Pssm-ID: 276952 [Multi-domain]  Cd Length: 673  Bit Score: 1432.11  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14920    1 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNIppespkpvkhQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14920   81 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNI----------PGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQE 338
Cdd:cd14920  151 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQE 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  339 TMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 418
Cdd:cd14920  231 TMEAMHIMGFSHEEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  419 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 498
Cdd:cd14920  311 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  499 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQKPRQ 578
Cdd:cd14920  391 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGSHSKFQKPRQ 470
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  579 LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiqniqracfydnitglhdppVDRIVG 658
Cdd:cd14920  471 LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKD---------------------VDRIVG 529
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  659 LDQVTGITETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEG 738
Cdd:cd14920  530 LDQVTGMTETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEG 609
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679  739 IRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14920  610 IRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 673
Myosin_N pfam02736
Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the ...
31-76 9.16e-12

Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown.


:

Pssm-ID: 426949  Cd Length: 45  Bit Score: 61.29  E-value: 9.16e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 45382679     31 TAKKLVWIPSERHGFEAASIKEERGDEVLVELaENGKKALVNKDDI 76
Cdd:pfam02736    1 DAKKLVWVPDPKEGFVKGEIKEEEGDKVTVET-EDGKTVTVKKDDV 45
 
Name Accession Description Interval E-value
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
879-1959 0e+00

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 1513.53  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    879 TRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDL 958
Cdd:pfam01576    1 TRQEEEMQAKEEELQKVKEKQQKAESELKELEKKHQQLCEEKNILAEQLQAETELFAEAEEMRARLAARKQELEEILHEL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    959 ESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDR 1038
Cdd:pfam01576   81 EARLEEEEERSQQLQNEKKKMQQHIQDLEEQLEEEEAARQKLQLEKVTTEAKIKKMEEDILLLEDQNNKLQKERKLLEER 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1039 IAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAK 1118
Cdd:pfam01576  161 ISEFTSNLAEEEEKSKSLNKLKNKHEAMISDLEDRLKKEEKGRQELEKAKRKLEGESSDLQEQIAELQAQIAELRAQLAK 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1119 KEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQE 1198
Cdd:pfam01576  241 KEEELQAALARLEEETAQKNAALKKLRELEAQLSELQEDLESERAARAKAEKQRRDLGEELEALKTELEDTLDTTAAQQE 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1199 LRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVK 1278
Cdd:pfam01576  321 LRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKASLEKAKQALESENAELQAELRSLQQAK 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1279 AESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEE 1358
Cdd:pfam01576  401 QDSEHKRKKLEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1359 TRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQR 1438
Cdd:pfam01576  481 TRQKLNLSSRLRQLEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGRKRLQRELEALTQR 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1439 LEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALS 1518
Cdd:pfam01576  561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETKALS 640
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1519 LARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEV 1598
Cdd:pfam01576  641 LARALEEALDAKEELERQNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEV 720
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1599 NMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQL 1678
Cdd:pfam01576  721 NMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIEAANKGRDEAVKQL 800
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1679 RKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSAL 1758
Cdd:pfam01576  801 KKLQAQMKDLQRELDEARASRDEIFAQSKESEKKLKSLEAELLQLQEDLAAAERARRQAQQERDELAEEIASGNSGKSAL 880
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1759 LDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEGS 1838
Cdd:pfam01576  881 LDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKLTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGT 960
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1839 VKSKFKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLKEVFMQVEDERRHADQYKEQMEKANARMKQLKRQLE 1918
Cdd:pfam01576  961 VKSKYKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRNADQYKDQAEKGNSRLKQLKRQLE 1040
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|.
gi 45382679   1919 EAEEEATRANASRRKLQRELDDATEANEGLSREVSTLKNRL 1959
Cdd:pfam01576 1041 EAEEEASRANAARRKLQRELDDATESAEAMNREVTTLRSKL 1081
MYSc_Myh10 cd14920
class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy ...
99-802 0e+00

class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy chain 10 (also called NMMHCB). Mutations in this gene have been associated with May-Hegglin anomaly and developmental defects in brain and heart. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276952 [Multi-domain]  Cd Length: 673  Bit Score: 1432.11  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14920    1 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNIppespkpvkhQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14920   81 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNI----------PGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQE 338
Cdd:cd14920  151 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQE 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  339 TMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 418
Cdd:cd14920  231 TMEAMHIMGFSHEEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  419 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 498
Cdd:cd14920  311 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  499 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQKPRQ 578
Cdd:cd14920  391 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGSHSKFQKPRQ 470
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  579 LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiqniqracfydnitglhdppVDRIVG 658
Cdd:cd14920  471 LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKD---------------------VDRIVG 529
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  659 LDQVTGITETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEG 738
Cdd:cd14920  530 LDQVTGMTETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEG 609
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679  739 IRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14920  610 IRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 673
Myosin_head pfam00063
Myosin head (motor domain);
87-802 0e+00

Myosin head (motor domain);


Pssm-ID: 395017  Cd Length: 674  Bit Score: 1098.10  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     87 VEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCML 166
Cdd:pfam00063    1 VEDMVELSYLNEPSVLHNLKKRYKSDLIYTYSGLVLVAVNPYKQLPIYSEDMIKAYRGKRRGELPPHIFAIADEAYRSML 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    167 QDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKdhnippespkpvkhQGELERQLLQANPILESFGNAKTVKN 246
Cdd:pfam00063   81 QDKENQSILISGESGAGKTENTKKIMQYLASVSGSGSAGN--------------VGRLEEQILQSNPILEAFGNAKTVRN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    247 DNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSN-GYI 325
Cdd:pfam00063  147 NNSSRFGKYIEIQFDAKGDIVGGKIETYLLEKSRVVYQAEGERNYHIFYQLLAGASAQLKKELRLTNPKDYHYLSQsGCY 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    326 PIPGQQDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRA 405
Cdd:pfam00063  227 TIDGIDDSEEFKITDKAMDILGFSDEEQMGIFRIVAAILHLGNIEFKKERNDEQAVPDDTENLQKAASLLGIDSTELEKA 306
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    406 ILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLC 485
Cdd:pfam00063  307 LCKRRIKTGRETVSKPQNVEQANYARDALAKAIYSRLFDWLVDRINKSLDVKTIEKASFIGVLDIYGFEIFEKNSFEQLC 386
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    486 INYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIERPanPPGVLALLDEECWFPKATDKTFVEKLVQ 565
Cdd:pfam00063  387 INYVNEKLQQFFNHHMFKLEQEEYVREGIEWTFIDFG-DNQPCIDLIEKK--PLGILSLLDEECLFPKATDQTFLDKLYS 463
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    566 EQGTHSKFQKPRQlKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEiqniqracfydni 645
Cdd:pfam00063  464 TFSKHPHFQKPRL-QGETHFIIKHYAGDVEYNVEGFLEKNKDPLNDDLVSLLKSSSDPLLAELFPDY------------- 529
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    646 tglhdppvDRIVGLDQVTGITETafgsAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHL 725
Cdd:pfam00063  530 --------ETAESAAANESGKST----PKRTKKKRFITVGSQFKESLGELMKTLNSTNPHYIRCIKPNEKKRAGVFDNSL 597
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679    726 VLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:pfam00063  598 VLHQLRCNGVLEGIRIRRAGFPNRITFQEFVQRYRILAPKTWPKWKGDAKKGCEAILQSLNLDKEEYQFGKTKIFFR 674
MYSc smart00242
Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical ...
80-814 0e+00

Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.


Pssm-ID: 214580 [Multi-domain]  Cd Length: 677  Bit Score: 1013.62  E-value: 0e+00
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679      80 NPPKFSKVEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISE 159
Cdd:smart00242    1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     160 SAYRCMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGrkdhnippespkpvkhQGELERQLLQANPILESFG 239
Cdd:smart00242   81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLASVSGSNTE----------------VGSVEDQILESNPILEAFG 144
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     240 NAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRF 319
Cdd:smart00242  145 NAKTLRNNNSSRFGKFIEIHFDAKGKIIGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRY 224
                           250       260       270       280       290       300       310       320
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     320 LSNG-YIPIPGQQDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENT-VAQKLCHLLGM 397
Cdd:smart00242  225 LNQGgCLTVDGIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKeELSNAAELLGV 304
                           330       340       350       360       370       380       390       400
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     398 NVMEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFE 477
Cdd:smart00242  305 DPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINQSLS-FKDGSTYFIGVLDIYGFEIFE 383
                           410       420       430       440       450       460       470       480
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     478 LNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLALLDEECWFPKATDK 557
Cdd:smart00242  384 VNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFF-DNQDCIDLIE--KKPPGILSLLDEECRFPKGTDQ 460
                           490       500       510       520       530       540       550       560
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     558 TFVEKLVQEQGTHSKFQKPRQlKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIQNiq 637
Cdd:smart00242  461 TFLEKLNQHHKKHPHFSKPKK-KGRTEFIIKHYAGDVTYDVTGFLEKNKDTLSDDLIELLQSSKNPLIASLFPSGVSN-- 537
                           570       580       590       600       610       620       630       640
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     638 racfydnitglhdppvdrivgldqvtgitetafgsayKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKR 717
Cdd:smart00242  538 -------------------------------------AGSKKRFQTVGSQFKEQLNELMDTLNSTNPHFIRCIKPNEEKK 580
                           650       660       670       680       690       700       710       720
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     718 AGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQS 797
Cdd:smart00242  581 PGDFDSSLVLHQLRYLGVLENIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKKACEALLQSLGLDEDEYQLGKT 660
                           730
                    ....*....|....*..
gi 45382679     798 KIFFRAGVLAHLEEERD 814
Cdd:smart00242  661 KVFLRPGQLAELEELRE 677
COG5022 COG5022
Myosin heavy chain [General function prediction only];
36-1379 0e+00

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 912.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   36 VWIPSERHGFEAASIKEERGDEVLVELA---ENGKKALVNKDDIQ--KMNPPKFSKVEDMAELTCLNEASVLHNLKDRYY 110
Cdd:COG5022   12 CWIPDEEKGWIWAEIIKEAFNKGKVTEEgkkEDGESVSVKKKVLGndRIKLPKFDGVDDLTELSYLNEPAVLHNLEKRYN 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  111 SGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGESGAGKTENTKK 190
Cdd:COG5022   92 NGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKR 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  191 VIQYLAHVASSHkgrkdhniPPESpkpvkhqGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGAN 270
Cdd:COG5022  172 IMQYLASVTSSS--------TVEI-------SSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAK 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  271 IETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIP-IPGQQDKDNFQETMEAMHIMGFS 349
Cdd:COG5022  237 IETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDkIDGIDDAKEFKITLDALKTIGID 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  350 HDEILSMLKVVSSVLQFGNISFKKERNtDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYVQKAQTKEQADF 429
Cdd:COG5022  317 EEEQDQIFKILAAILHIGNIEFKEDRN-GAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALA 395
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  430 AVEALAKATYERLFRWLVHRINKALDRTKRQGaSFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEY 509
Cdd:COG5022  396 IRDSLAKALYSNLFDWIVDRINKSLDHSAAAS-NFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEY 474
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  510 QREGIEWNFIDFgLDLQPCIDLIERpANPPGVLALLDEECWFPKATDKTFVEKLVQ--EQGTHSKFQKPRQLKDKadFCI 587
Cdd:COG5022  475 VKEGIEWSFIDY-FDNQPCIDLIEK-KNPLGILSLLDEECVMPHATDESFTSKLAQrlNKNSNPKFKKSRFRDNK--FVV 550
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  588 IHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEiQNIQracfydnitglhdppvdrivgldqvtgite 667
Cdd:COG5022  551 KHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDE-ENIE------------------------------ 599
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  668 tafgsayktKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFP 747
Cdd:COG5022  600 ---------SKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFP 670
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  748 NRIVFQEFRQRYEILTPNA----IPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFRAGVLAHLEEERDLKITDIIIF 823
Cdd:COG5022  671 SRWTFDEFVQRYRILSPSKswtgEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATR 750
                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  824 FQAVCRGYLARKAFAKKQQQLSALKILQRNCAAYLKLRHWQWWRVFTKVKPLLQVTRQEEELQAKDEELMKVKEKqtkve 903
Cdd:COG5022  751 IQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKT----- 825
                        890       900       910       920       930       940       950       960
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  904 aeleemerkhqqlLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVeeeeernQILQNEKKKMQGHI 983
Cdd:COG5022  826 -------------IKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYL-------QSAQRVELAERQLQ 885
                        970       980       990      1000      1010      1020      1030      1040
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  984 QDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTS--QLAEEEEKAKNLAKLKN 1061
Cdd:COG5022  886 ELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPsiEYVKLPELNKLHEVESK 965
                       1050      1060      1070      1080      1090      1100      1110      1120
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1062 KQEmMITDLEERLKKEEKTRQELEKAKRKLDG---ETTDLQDQIAELQAQIEELKiQLAKKEEELQAALARGDEEavqkn 1138
Cdd:COG5022  966 LKE-TSEEYEDLLKKSTILVREGNKANSELKNfkkELAELSKQYGALQESTKQLK-ELPVEVAELQSASKIISSE----- 1038
                       1130      1140      1150      1160      1170      1180      1190      1200
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1139 nalkviRELQAQIAELQEdlesekaSRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEET 1218
Cdd:COG5022 1039 ------STELSILKPLQK-------LKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTN 1105
                       1210      1220      1230      1240      1250      1260      1270      1280
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1219 KNH--EAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACevkVLQQVKAESEHKRKKLDAQVQELT 1296
Cdd:COG5022 1106 RNLvkPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDG---LFWEANLEALPSPPPFAALSEKRL 1182
                       1290      1300      1310      1320      1330      1340      1350      1360
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1297 AKVTEGERLRVELAEKANKLQNELDNVSS----------LLEEAEKKGI------KFAKDAASLESQLQDTQELLQEETR 1360
Cdd:COG5022 1183 YQSALYDEKSKLSSSEVNDLKNELIALFSkifsgwprgdKLKKLISEGWvpteysTSLKGFNNLNKKFDTPASMSNEKLL 1262
                       1370
                 ....*....|....*....
gi 45382679 1361 QKLNLSSRIRQLEEEKNNL 1379
Cdd:COG5022 1263 SLLNSIDNLLSSYKLEEEV 1281
PTZ00014 PTZ00014
myosin-A; Provisional
97-855 2.62e-128

myosin-A; Provisional


Pssm-ID: 240229 [Multi-domain]  Cd Length: 821  Bit Score: 424.44  E-value: 2.62e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    97 NEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHE-MPPHIYAISESAYRCMLQDREDQSIL 175
Cdd:PTZ00014  108 NIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDkLPPHVFTTARRALENLHGVKKSQTII 187
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   176 CTGESGAGKTENTKKVIQYLAhvaSSHKGRKDHNIppespkpvkhqgelERQLLQANPILESFGNAKTVKNDNSSRFGKF 255
Cdd:PTZ00014  188 VSGESGAGKTEATKQIMRYFA---SSKSGNMDLKI--------------QNAIMAANPVLEAFGNAKTIRNNNSSRFGRF 250
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   256 IRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDN 335
Cdd:PTZ00014  251 MQLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPKCLDVPGIDDVKD 330
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   336 FQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISF--KKERNTDQASM--PEN-TVAQKLCHLLGMNVMEFTRAILTPR 410
Cdd:PTZ00014  331 FEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIegKEEGGLTDAAAisDESlEVFNEACELLFLDYESLKKELTVKV 410
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   411 IKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGAsFIGILDIAGFEIFELNSFEQLCINYTN 490
Cdd:PTZ00014  411 TYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKV-FIGMLDIFGFEVFKNNSLEQLFINITN 489
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   491 EKLQQLFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppGVLALLDEECWFPKATDKTFVEKLVQEQGTH 570
Cdd:PTZ00014  490 EMLQKNFVDIVFERESKLYKDEGISTEELEY-TSNESVIDLLCGKGK--SVLSILEDQCLAPGGTDEKFVSSCNTNLKNN 566
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   571 SKFQKPRQLKDKaDFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiQNIQRAcfydnitglhd 650
Cdd:PTZ00014  567 PKYKPAKVDSNK-NFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEG--VEVEKG----------- 632
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   651 ppvdrivgldqvtgitetafgsayKTKKGMFrtVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQL 730
Cdd:PTZ00014  633 ------------------------KLAKGQL--IGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQL 686
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   731 RCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR---AGVLA 807
Cdd:PTZ00014  687 HSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKkdaAKELT 766
                         730       740       750       760
                  ....*....|....*....|....*....|....*....|....*...
gi 45382679   808 HLEEERDLKITDIIIFFQAVCRGYLARKAFAKKqqqlsaLKILQRNCA 855
Cdd:PTZ00014  767 QIQREKLAAWEPLVSVLEALILKIKKKRKVRKN------IKSLVRIQA 808
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
882-1714 6.60e-39

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 159.49  E-value: 6.60e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  882 EEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFA----EAEEMRARLAAKKQELEEILHD 957
Cdd:COG1196  178 ERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLaklkELRKELEELEEELSRLEEELEE 257
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  958 LESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMED 1037
Cdd:COG1196  258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1038 RIAECTSQLAEEEEKAKNLAKLKNKQEmmiTDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLA 1117
Cdd:COG1196  338 ELEERETLLEELEQLLAELEEAKEELE---EKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLE 414
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1118 KKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELED---TLDTTA 1194
Cdd:COG1196  415 RLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSleaRLDRLE 494
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1195 AQQElRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEE---------LSEQLEQAKRFKANLEKNKQGLESdnk 1265
Cdd:COG1196  495 AEQR-ASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAalgnrlqavVVENEEVAKKAIEFLKENKAGRAT--- 570
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1266 elaceVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLR------------VELAEKANKLQNELDN----VSSLLEE 1329
Cdd:COG1196  571 -----FLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEpavrfvlgdtlvVDDLEQARRLARKLRIkyriVTLDGDL 645
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1330 AEKKGI-----KFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQL 1404
Cdd:COG1196  646 VEPSGSitggsRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1405 AEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLmvdldhqrqivsnlekkqkkf 1484
Cdd:COG1196  726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEEL--------------------- 784
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1485 dqmlaeeKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKS 1564
Cdd:COG1196  785 -------EEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKE 857
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1565 KRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQnEEKKRMLVKQVRELEAELED--ERKQ 1642
Cdd:COG1196  858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL-RERLEELEAKLERLEVELPEleEELE 936
                        810       820       830       840       850       860       870
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 45382679 1643 RALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLK 1714
Cdd:COG1196  937 EEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKR 1008
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1047-1892 1.81e-35

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 148.28  E-value: 1.81e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1047 AEEEEKAKNL-AKLKNKQ-EMMITDLEERLKKEEKTRQELEKAKRKLDgettDLQDQIAELQAQIEELKIQLAKKEEELQ 1124
Cdd:TIGR02168  209 AEKAERYKELkAELRELElALLVLRLEELREELEELQEELKEAEEELE----ELTAELQELEEKLEELRLEVSELEEEIE 284
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1125 AALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKRE 1204
Cdd:TIGR02168  285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1205 QEVAELKKAIEEETKNHEAQIQEIRQRHATaLEELSEQLEQAKRFKANLEKNKQGLESDNkelacevkvlqqvkaeSEHK 1284
Cdd:TIGR02168  365 AELEELESRLEELEEQLETLRSKVAQLELQ-IASLNNEIERLEARLERLEDRRERLQQEI----------------EELL 427
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1285 RKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEetrqKLN 1364
Cdd:TIGR02168  428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN----LEG 503
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1365 LSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVdddlgtiegLEENKKKLLKDMESLSQRLEEKAM 1444
Cdd:TIGR02168  504 FSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAV---------VVENLNAAKKAIAFLKQNELGRVT 574
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1445 AYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAeekNISARYAEERDRAEAEAREKETKAL------- 1517
Cdd:TIGR02168  575 FLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALS---YLLGGVLVVDDLDNALELAKKLRPGyrivtld 651
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1518 --------SLARALEEALEAKEEFERQNKQLRADMEdlmsskddvgknvhELEKSKRTLEQQVEEMRTQLEELEDELQAT 1589
Cdd:TIGR02168  652 gdlvrpggVITGGSAKTNSSILERRREIEELEEKIE--------------ELEEKIAELEKALAELRKELEELEEELEQL 717
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1590 EDAKLRLEVNMQAMKAQFERdLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANK 1669
Cdd:TIGR02168  718 RKELEELSRQISALRKDLAR-LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1670 ARDEAIKQLRKLQAQ--------------MKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARR 1735
Cdd:TIGR02168  797 ELKALREALDELRAEltllneeaanlrerLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1736 HAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSA----- 1810
Cdd:TIGR02168  877 ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLtleea 956
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1811 ---AQKSENARQQLERQNKELKAKLQELeGSVK----SKFKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLK 1883
Cdd:TIGR02168  957 ealENKIEDDEEEARRRLKRLENKIKEL-GPVNlaaiEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFK 1035

                   ....*....
gi 45382679   1884 EVFMQVEDE 1892
Cdd:TIGR02168 1036 DTFDQVNEN 1044
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
997-1586 4.34e-23

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 107.46  E-value: 4.34e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   997 RQKLQLEKV-TAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLK 1075
Cdd:PRK03918  152 RQILGLDDYeNAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK 231
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1076 KEEKTRQELEKAKR---KLDGETTDLQDQIAELQAQIEELKiqlaKKEEELQAALARgdeeavqknnaLKVIRELQAQIA 1152
Cdd:PRK03918  232 ELEELKEEIEELEKeleSLEGSKRKLEEKIRELEERIEELK----KEIEELEEKVKE-----------LKELKEKAEEYI 296
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1153 ELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQ---EVAELKKAIE--EETKNHEAQIQE 1227
Cdd:PRK03918  297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKElekRLEELEERHElyEEAKAKKEELER 376
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1228 IRQRHA-TALEELSEQLEQAKRFKANLEKN-------KQGLESDNKELACEVKVLQQVKAE--------SEHKRKKLdaq 1291
Cdd:PRK03918  377 LKKRLTgLTPEKLEKELEELEKAKEEIEEEiskitarIGELKKEIKELKKAIEELKKAKGKcpvcgrelTEEHRKEL--- 453
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1292 VQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEK--KGIKFAKDAASLESQLQD-TQELLQEETRQKLNLSSR 1368
Cdd:PRK03918  454 LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEK 533
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1369 IRQLEEEKNNLQEQQEEEeearKNLEKQMLALQAQLAEAKKKVDDDLGTiegLEENKKKLLKDMESLSQRLEEKAMAYDK 1448
Cdd:PRK03918  534 LIKLKGEIKSLKKELEKL----EELKKKLAELEKKLDELEEELAELLKE---LEELGFESVEELEERLKELEPFYNEYLE 606
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1449 LEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEErdraeaEAREKETKALSLARALEEALE 1528
Cdd:PRK03918  607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE------EYEELREEYLELSRELAGLRA 680
                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 45382679  1529 AKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEqQVEEMRTQLEELEDEL 1586
Cdd:PRK03918  681 ELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE-RVEELREKVKKYKALL 737
Myosin_N pfam02736
Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the ...
31-76 9.16e-12

Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown.


Pssm-ID: 426949  Cd Length: 45  Bit Score: 61.29  E-value: 9.16e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 45382679     31 TAKKLVWIPSERHGFEAASIKEERGDEVLVELaENGKKALVNKDDI 76
Cdd:pfam02736    1 DAKKLVWVPDPKEGFVKGEIKEEEGDKVTVET-EDGKTVTVKKDDV 45
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
1102-1358 5.91e-06

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 380155 [Multi-domain]  Cd Length: 1848  Bit Score: 51.76  E-value: 5.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1102 IAELQAQIEELKIQLAKKEeelQAALARGDEEAVQKNNAlKVIRELQAQIAEL---QEDLES--EKASRNKAEKQKRDLS 1176
Cdd:NF012221 1537 TSESSQQADAVSKHAKQDD---AAQNALADKERAEADRQ-RLEQEKQQQLAAIsgsQSQLEStdQNALETNGQAQRDAIL 1612
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1177 EELEALKTELE------DTLDTTAAQQELRTK--REQEVAELKKAIEEE---TKNH-EAQIQEIRQRHATALEELSEQLE 1244
Cdd:NF012221 1613 EESRAVTKELTtlaqglDALDSQATYAGESGDqwRNPFAGGLLDRVQEQlddAKKIsGKQLADAKQRHVDNQQKVKDAVA 1692
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1245 QAKRFKANLEKNKQGLESDNKelacevkvlqqvKAESEHKRKKLDAQVQELTAKVTEgerlrvelaEKANklqneldnvs 1324
Cdd:NF012221 1693 KSEAGVAQGEQNQANAEQDID------------DAKADAEKRKDDALAKQNEAQQAE---------SDAN---------- 1741
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 45382679  1325 SLLEEAEKKGIKFAKDAASLESQLQ-DTQELLQEE 1358
Cdd:NF012221 1742 AAANDAQSRGEQDASAAENKANQAQaDAKGAKQDE 1776
ClyA_Cry6Aa-like cd22656
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ...
1560-1698 2.48e-04

Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.


Pssm-ID: 439154 [Multi-domain]  Cd Length: 309  Bit Score: 45.44  E-value: 2.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1560 ELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQ-NEEKKRMLVKQVRELEAELED 1638
Cdd:cd22656  111 ELEEAKKTIKALLDDLLKEAKKYQDKAAKVVDKLTDFENQTEKDQTALETLEKALKDLlTDEGGAIARKEIKDLQKELEK 190
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1639 ERKqrALAVAAKKKMEmDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARAS 1698
Cdd:cd22656  191 LNE--EYAAKLKAKID-ELKALIADDEAKLAAALRLIADLTAADTDLDNLLALIGPAIPA 247
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
1108-1276 6.92e-04

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 43.85  E-value: 6.92e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    1108 QIEELKIQLAKKEEELQAALARGDEEavqknnaLKVIRELQAQIAELQEDLESEKASRNKAEKQKRDL-SEELEALKTEL 1186
Cdd:smart00787  141 LLEGLKEGLDENLEGLKEDYKLLMKE-------LELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCdPTELDRAKEKL 213
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    1187 EDTLDTTAAQQELRTKREQEVAELKKAIEEETknheAQIQEIRqrhataleelsEQLEQAKRFkanLEKNKQGLESDNKE 1266
Cdd:smart00787  214 KKLLQEIMIKVKKLEELEEELQELESKIEDLT----NKKSELN-----------TEIAEAEKK---LEQCRGFTFKEIEK 275
                           170
                    ....*....|
gi 45382679    1267 LACEVKVLQQ 1276
Cdd:smart00787  276 LKEQLKLLQS 285
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
1448-1651 3.27e-03

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 380155 [Multi-domain]  Cd Length: 1848  Bit Score: 42.51  E-value: 3.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1448 KLEKTKNRLQQELDDLmvdLDHqrqiVSNLEKKQKKFDQmLAEEKNISAryaeERDRAEAEAREKETKALSLARALEEAL 1527
Cdd:NF012221 1566 RAEADRQRLEQEKQQQ---LAA----ISGSQSQLESTDQ-NALETNGQA----QRDAILEESRAVTKELTTLAQGLDALD 1633
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1528 EAKEEFERQNKQLRAD-----MEDLMSSKDDVGKNVHE-LEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQ 1601
Cdd:NF012221 1634 SQATYAGESGDQWRNPfagglLDRVQEQLDDAKKISGKqLADAKQRHVDNQQKVKDAVAKSEAGVAQGEQNQANAEQDID 1713
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 45382679  1602 AMKAQFE-RDLQARDEQNEEKKRmlvKQVRELEAELEDERKQRALAVAAKK 1651
Cdd:NF012221 1714 DAKADAEkRKDDALAKQNEAQQA---ESDANAAANDAQSRGEQDASAAENK 1761
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
997-1213 3.39e-03

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 380155 [Multi-domain]  Cd Length: 1848  Bit Score: 42.51  E-value: 3.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   997 RQKLQLEKVTAEAKIKKMEEEillLE--DQNskflkekKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERL 1074
Cdd:NF012221 1571 RQRLEQEKQQQLAAISGSQSQ---LEstDQN-------ALETNGQAQRDAILEESRAVTKELTTLAQGLDALDSQATYAG 1640
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1075 KKEEKTRQELekAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARgDEEAVQKNnalkvirelQAQIAEL 1154
Cdd:NF012221 1641 ESGDQWRNPF--AGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK-SEAGVAQG---------EQNQANA 1708
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1155 QEDLESekaSRNKAEKQKRD-LSEELEALKTELEDTLDTTAAQQelRTKREQEVAELKKA 1213
Cdd:NF012221 1709 EQDIDD---AKADAEKRKDDaLAKQNEAQQAESDANAAANDAQS--RGEQDASAAENKAN 1763
 
Name Accession Description Interval E-value
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
879-1959 0e+00

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 1513.53  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    879 TRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDL 958
Cdd:pfam01576    1 TRQEEEMQAKEEELQKVKEKQQKAESELKELEKKHQQLCEEKNILAEQLQAETELFAEAEEMRARLAARKQELEEILHEL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    959 ESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDR 1038
Cdd:pfam01576   81 EARLEEEEERSQQLQNEKKKMQQHIQDLEEQLEEEEAARQKLQLEKVTTEAKIKKMEEDILLLEDQNNKLQKERKLLEER 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1039 IAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAK 1118
Cdd:pfam01576  161 ISEFTSNLAEEEEKSKSLNKLKNKHEAMISDLEDRLKKEEKGRQELEKAKRKLEGESSDLQEQIAELQAQIAELRAQLAK 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1119 KEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQE 1198
Cdd:pfam01576  241 KEEELQAALARLEEETAQKNAALKKLRELEAQLSELQEDLESERAARAKAEKQRRDLGEELEALKTELEDTLDTTAAQQE 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1199 LRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVK 1278
Cdd:pfam01576  321 LRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKASLEKAKQALESENAELQAELRSLQQAK 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1279 AESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEE 1358
Cdd:pfam01576  401 QDSEHKRKKLEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEE 480
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1359 TRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQR 1438
Cdd:pfam01576  481 TRQKLNLSSRLRQLEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGRKRLQRELEALTQR 560
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1439 LEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALS 1518
Cdd:pfam01576  561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETKALS 640
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1519 LARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEV 1598
Cdd:pfam01576  641 LARALEEALDAKEELERQNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEV 720
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1599 NMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQL 1678
Cdd:pfam01576  721 NMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIEAANKGRDEAVKQL 800
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1679 RKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSAL 1758
Cdd:pfam01576  801 KKLQAQMKDLQRELDEARASRDEIFAQSKESEKKLKSLEAELLQLQEDLAAAERARRQAQQERDELAEEIASGNSGKSAL 880
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1759 LDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEGS 1838
Cdd:pfam01576  881 LDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKLTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGT 960
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1839 VKSKFKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLKEVFMQVEDERRHADQYKEQMEKANARMKQLKRQLE 1918
Cdd:pfam01576  961 VKSKYKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRNADQYKDQAEKGNSRLKQLKRQLE 1040
                         1050      1060      1070      1080
                   ....*....|....*....|....*....|....*....|.
gi 45382679   1919 EAEEEATRANASRRKLQRELDDATEANEGLSREVSTLKNRL 1959
Cdd:pfam01576 1041 EAEEEASRANAARRKLQRELDDATESAEAMNREVTTLRSKL 1081
MYSc_Myh10 cd14920
class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy ...
99-802 0e+00

class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy chain 10 (also called NMMHCB). Mutations in this gene have been associated with May-Hegglin anomaly and developmental defects in brain and heart. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276952 [Multi-domain]  Cd Length: 673  Bit Score: 1432.11  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14920    1 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNIppespkpvkhQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14920   81 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNI----------PGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQE 338
Cdd:cd14920  151 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQE 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  339 TMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 418
Cdd:cd14920  231 TMEAMHIMGFSHEEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  419 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 498
Cdd:cd14920  311 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  499 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQKPRQ 578
Cdd:cd14920  391 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGSHSKFQKPRQ 470
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  579 LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiqniqracfydnitglhdppVDRIVG 658
Cdd:cd14920  471 LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKD---------------------VDRIVG 529
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  659 LDQVTGITETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEG 738
Cdd:cd14920  530 LDQVTGMTETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEG 609
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679  739 IRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14920  610 IRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 673
MYSc_class_II cd01377
class II myosins, motor domain; Myosin motor domain in class II myosins. Class II myosins, ...
99-802 0e+00

class II myosins, motor domain; Myosin motor domain in class II myosins. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. Thus, myosin II has two heads. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276951 [Multi-domain]  Cd Length: 662  Bit Score: 1319.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd01377    1 ASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVIDKYKGKRREEMPPHIFAIADNAYRNMLQDRENQSILITG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNippespkpvKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd01377   81 ESGAGKTENTKKVIQYLASVAASSKKKKESG---------KKKGTLEDQILQANPILEAFGNAKTVRNNNSSRFGKFIRI 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYR-FLSNGYIPIPGQQDKDNFQ 337
Cdd:cd01377  152 HFGSTGKIAGADIETYLLEKSRVVRQAKGERNYHIFYQLLSGADPELKEKLLLTGDPSYYfFLSQGELTIDGVDDAEEFK 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  338 ETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDY 417
Cdd:cd01377  232 LTDEAFDILGFSEEEKMSIFKIVAAILHLGNIKFKQRRREEQAELDGTEEADKAAHLLGVNSSDLLKALLKPRIKVGREW 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  418 VQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLF 497
Cdd:cd01377  312 VTKGQNKEQVVFSVGALAKALYERLFLWLVKRINKTLD-TKSKRQYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFF 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  498 NHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPanPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSK-FQKP 576
Cdd:cd01377  391 NHHMFVLEQEEYKKEGIEWTFIDFGLDLQPTIDLIEKP--NMGILSILDEECVFPKATDKTFVEKLYSNHLGKSKnFKKP 468
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  577 RQLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIQniqracfydnitglhdppvdri 656
Cdd:cd01377  469 KPKKSEAHFILKHYAGDVEYNIDGWLEKNKDPLNENVVALLKKSSDPLVASLFKDYEE---------------------- 526
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  657 vgldqvtgitETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVL 736
Cdd:cd01377  527 ----------SGGGGGKKKKKGGSFRTVSQLHKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKIDAPLVLHQLRCNGVL 596
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679  737 EGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd01377  597 EGIRICRKGFPNRIIFAEFKQRYSILAPNAIPKGFDDGKAACEKILKALQLDPELYRIGNTKVFFK 662
MYSc_Myh18 cd14932
class II myosin heavy chain 18, motor domain; Myosin motor domain of muscle myosin heavy chain ...
99-802 0e+00

class II myosin heavy chain 18, motor domain; Myosin motor domain of muscle myosin heavy chain 18. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276895 [Multi-domain]  Cd Length: 676  Bit Score: 1222.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14932    1 ASVLHNLKERYYSGLIYTYSGLFCVVINPYKYLPIYSEEIVNMYKGKKRHEMPPHIYAITDTAYRSMMQDREDQSILCTG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNippespKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14932   81 ESGAGKTENTKKVIQYLAYVASSFKTKKDQS------SIALSHGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQE 338
Cdd:cd14932  155 NFDVNGYIVGANIETYLLEKSRAIRQAKDERAFHIFYYLLTGAGDKLRSELCLEDYSKYRFLSNGNVTIPGQQDKELFAE 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  339 TMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 418
Cdd:cd14932  235 TMEAFRIMSIPEEEQTGLLKVVSAVLQLGNMSFKKERNSDQASMPDDTAAQKVCHLLGMNVTDFTRAILSPRIKVGRDYV 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  419 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 498
Cdd:cd14932  315 QKAQTQEQAEFAVEALAKASYERMFRWLVMRINKALDKTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 394
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  499 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQKPRQ 578
Cdd:cd14932  395 HTMFILEQEEYQREGIEWSFIDFGLDLQPCIELIEKPNGPPGILALLDEECWFPKATDKSFVEKVVQEQGNNPKFQKPKK 474
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  579 LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiqniqracfydnitglhdppVDRIVG 658
Cdd:cd14932  475 LKDDADFCIIHYAGKVDYKANEWLMKNMDPLNENVATLLNQSTDKFVSELWKD---------------------VDRIVG 533
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  659 LDQVTGITETAFGsAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEG 738
Cdd:cd14932  534 LDKVAGMGESLHG-AFKTRKGMFRTVGQLYKEQLMNLMTTLRNTNPNFVRCIIPNHEKKAGKLAHHLVLDQLRCNGVLEG 612
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679  739 IRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14932  613 IRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACVLMVKALELDPNLYRIGQSKVFFR 676
MYSc_Myh9 cd14919
class II myosin heavy chain 9, motor domain; Myosin motor domain of non-muscle myosin heavy ...
99-802 0e+00

class II myosin heavy chain 9, motor domain; Myosin motor domain of non-muscle myosin heavy chain 9 (also called NMMHCA, NMHC-II-A, MHA, FTNS, EPSTS, and DFNA17). Myosin is a hexameric protein composed of a pair of myosin heavy chains (MYH) and two pairs of nonidentical light chains. The encoded protein is a myosin IIA heavy chain that contains an IQ domain and a myosin head-like domain which is involved in several important functions, including cytokinesis, cell motility and maintenance of cell shape. Defects in this gene have been associated with non-syndromic sensorineural deafness autosomal dominant type 17, Epstein syndrome, Alport syndrome with macrothrombocytopenia, Sebastian syndrome, Fechtner syndrome and macrothrombocytopenia with progressive sensorineural deafness. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276883 [Multi-domain]  Cd Length: 670  Bit Score: 1192.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14919    1 ASVLHNLKERYYSGLIYTYSGLFCVVINPYKNLPIYSEEIVEMYKGKKRHEMPPHIYAITDTAYRSMMQDREDQSILCTG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKGRKDhnippespkpvkhQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14919   81 ESGAGKTENTKKVIQYLAHVASSHKSKKD-------------QGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQE 338
Cdd:cd14919  148 NFDVNGYIVGANIETYLLEKSRAIRQAKEERTFHIFYYLLSGAGEHLKTDLLLEPYNKYRFLSNGHVTIPGQQDKDMFQE 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  339 TMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 418
Cdd:cd14919  228 TMEAMRIMGIPEEEQMGLLRVISGVLQLGNIVFKKERNTDQASMPDNTAAQKVSHLLGINVTDFTRGILTPRIKVGRDYV 307
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  419 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 498
Cdd:cd14919  308 QKAQTKEQADFAIEALAKATYERMFRWLVLRINKALDKTKRQGASFIGILDIAGFEIFDLNSFEQLCINYTNEKLQQLFN 387
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  499 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQKPRQ 578
Cdd:cd14919  388 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIEKPAGPPGILALLDEECWFPKATDKSFVEKVVQEQGTHPKFQKPKQ 467
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  579 LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiqniqracfydnitglhdppVDRIVG 658
Cdd:cd14919  468 LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNIATLLHQSSDKFVSELWKD---------------------VDRIIG 526
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  659 LDQVTGITETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEG 738
Cdd:cd14919  527 LDQVAGMSETALPGAFKTRKGMFRTVGQLYKEQLAKLMATLRNTNPNFVRCIIPNHEKKAGKLDPHLVLDQLRCNGVLEG 606
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679  739 IRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14919  607 IRICRQGFPNRVVFQEFRQRYEILTPNSIPKGFMDGKQACVLMIKALELDSNLYRIGQSKVFFR 670
MYSc_Myh11 cd14921
class II myosin heavy chain 11, motor domain; Myosin motor domain of smooth muscle myosin ...
99-802 0e+00

class II myosin heavy chain 11, motor domain; Myosin motor domain of smooth muscle myosin heavy chain 11 (also called SMMHC, SMHC). The gene product is a subunit of a hexameric protein that consists of two heavy chain subunits and two pairs of non-identical light chain subunits. It functions as a major contractile protein, converting chemical energy into mechanical energy through the hydrolysis of ATP. The gene encoding a human ortholog of rat NUDE1 is transcribed from the reverse strand of this gene, and its 3' end overlaps with that of the latter. Inversion of the MYH11 locus is one of the most frequent chromosomal aberrations found in acute myeloid leukemia. Alternative splicing generates isoforms that are differentially expressed, with ratios changing during muscle cell maturation. Mutations in MYH11 have been described in individuals with thoracic aortic aneurysms leading to acute aortic dissections with patent ductus arteriosus. MYH11 mutations are also thought to contribute to human colorectal cancer and are also associated with Peutz-Jeghers syndrome. The mutations found in human intestinal neoplasia result in unregulated proteins with constitutive motor activity, similar to the mutant myh11 zebrafish. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276885 [Multi-domain]  Cd Length: 673  Bit Score: 1182.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14921    1 ASVLHNLRERYFSGLIYTYSGLFCVVVNPYKHLPIYSEKIVDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNIppespkpvkhQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14921   81 ESGAGKTENTKKVIQYLAVVASSHKGKKDTSI----------TGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQE 338
Cdd:cd14921  151 NFDVTGYIVGANIETYLLEKSRAIRQARDERTFHIFYYLIAGAKEKMRSDLLLEGFNNYTFLSNGFVPIPAAQDDEMFQE 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  339 TMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 418
Cdd:cd14921  231 TLEAMSIMGFSEEEQLSILKVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVV 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  419 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 498
Cdd:cd14921  311 QKAQTKEQADFAIEALAKATYERLFRWILTRVNKALDKTHRQGASFLGILDIAGFEIFEVNSFEQLCINYTNEKLQQLFN 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  499 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQKPRQ 578
Cdd:cd14921  391 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPNNPPGVLALLDEECWFPKATDKSFVEKLCTEQGNHPKFQKPKQ 470
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  579 LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiqniqracfydnitglhdppVDRIVG 658
Cdd:cd14921  471 LKDKTEFSIIHYAGKVDYNASAWLTKNMDPLNDNVTSLLNASSDKFVADLWKD---------------------VDRIVG 529
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  659 LDQVTGITETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEG 738
Cdd:cd14921  530 LDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLGKLMTTLRNTTPNFVRCIIPNHEKRSGKLDAFLVLEQLRCNGVLEG 609
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679  739 IRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14921  610 IRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFR 673
MYSc_Myh19 cd15896
class II myosin heavy chain19, motor domain; Myosin motor domain of muscle myosin heavy chain ...
99-802 0e+00

class II myosin heavy chain19, motor domain; Myosin motor domain of muscle myosin heavy chain 19. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276899 [Multi-domain]  Cd Length: 675  Bit Score: 1174.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd15896    1 ASVLHNLKERYYSGLIYTYSGLFCVVINPYKNLPIYSEEIVEMYKGKKRHEMPPHIYAITDTAYRSMMQDREDQSILCTG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNippespKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd15896   81 ESGAGKTENTKKVIQYLAHVASSHKTKKDQN------SLALSHGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQE 338
Cdd:cd15896  155 NFDVNGYIVGANIETYLLEKSRAIRQAKEERTFHIFYYLLTGAGDKLRSELLLENYNNYRFLSNGNVTIPGQQDKDLFTE 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  339 TMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 418
Cdd:cd15896  235 TMEAFRIMGIPEDEQIGMLKVVASVLQLGNMSFKKERHTDQASMPDNTAAQKVCHLMGMNVTDFTRAILSPRIKVGRDYV 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  419 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 498
Cdd:cd15896  315 QKAQTQEQAEFAVEALAKATYERMFRWLVMRINKALDKTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 394
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  499 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQKPRQ 578
Cdd:cd15896  395 HTMFILEQEEYQREGIEWSFIDFGLDLQPCIDLIEKPASPPGILALLDEECWFPKATDKSFVEKVLQEQGTHPKFFKPKK 474
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  579 LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiqniqracfydnitglhdppVDRIVG 658
Cdd:cd15896  475 LKDEADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLNQSTDKFVSELWKD---------------------VDRIVG 533
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  659 LDQVTGITEtaFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEG 738
Cdd:cd15896  534 LDKVSGMSE--MPGAFKTRKGMFRTVGQLYKEQLSKLMATLRNTNPNFVRCIIPNHEKKAGKLDPHLVLDQLRCNGVLEG 611
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679  739 IRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd15896  612 IRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACVLMIKSLELDPNLYRIGQSKVFFR 675
MYSc_Myh2_insects_mollusks cd14911
class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle ...
99-802 0e+00

class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle myosin heavy chain 2 (also called MYH2A, MYHSA2, MyHC-IIa, MYHas8, MyHC-2A) in insects and mollusks. This gene encodes a member of the class II or conventional myosin heavy chains, and functions in skeletal muscle contraction. Mutations in this gene results in inclusion body myopathy-3 and familial congenital myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276876 [Multi-domain]  Cd Length: 674  Bit Score: 1166.67  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14911    1 ASVLHNIKDRYYSGLIYTYSGLFCVVVNPYKKLPIYTEKIMERYKGIKRHEVPPHVFAITDSAYRNMLGDREDQSILCTG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASShKGRKDHNIPPESPKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14911   81 ESGAGKTENTKKVIQFLAYVAAS-KPKGSGAVPHPAVNPAVLIGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQE 338
Cdd:cd14911  160 NFDASGFISGANIETYLLEKSRAIRQAKDERTFHIFYQLLAGATPEQREKFILDDVKSYAFLSNGSLPVPGVDDYAEFQA 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  339 TMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 418
Cdd:cd14911  240 TVKSMNIMGMTSEDFNSIFRIVSAVLLFGSMKFRQERNNDQATLPDNTVAQKIAHLLGLSVTDMTRAFLTPRIKVGRDFV 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  419 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 498
Cdd:cd14911  320 TKAQTKEQVEFAVEAIAKACYERMFKWLVNRINRSLDRTKRQGASFIGILDMAGFEIFELNSFEQLCINYTNEKLQQLFN 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  499 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQKpRQ 578
Cdd:cd14911  400 HTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDKPG---GIMALLDEECWFPKATDKTFVDKLVSAHSMHPKFMK-TD 475
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  579 LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEiqniqracfydnitglhdppvdRIVG 658
Cdd:cd14911  476 FRGVADFAIVHYAGRVDYSAAKWLMKNMDPLNENIVSLLQGSQDPFVVNIWKDA----------------------EIVG 533
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  659 LDQVTgITETAFGSayKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEG 738
Cdd:cd14911  534 MAQQA-LTDTQFGA--RTRKGMFRTVSHLYKEQLAKLMDTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEG 610
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679  739 IRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14911  611 IRICRQGFPNRIPFQEFRQRYELLTPNVIPKGFMDGKKACEKMIQALELDSNLYRVGQSKIFFR 674
MYSc_Myh14_mammals cd14930
class II myosin heavy chain 14 motor domain; Myosin motor domain of non-muscle myosin heavy ...
99-802 0e+00

class II myosin heavy chain 14 motor domain; Myosin motor domain of non-muscle myosin heavy chain 14 (also called FLJ13881, KIAA2034, MHC16, MYH17). Its members include mammals, chickens, and turtles. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Some of the data used for this classification were produced by the CyMoBase team at the Max-Planck-Institute for Biophysical Chemistry. The sequence names are composed of the species abbreviation followed by the protein abbreviation and optional protein classifier and variant designations.


Pssm-ID: 276893 [Multi-domain]  Cd Length: 670  Bit Score: 1127.11  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14930    1 ASVLHNLRERYYSGLIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNIPpespkpvkhqGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14930   81 ESGAGKTENTKKVIQYLAHVASSPKGRKEPGVP----------GELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRI 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQdKDNFQE 338
Cdd:cd14930  151 NFDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGPSSSPGQE-RELFQE 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  339 TMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 418
Cdd:cd14930  230 TLESLRVLGFSHEEITSMLRMVSAVLQFGNIVLKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYV 309
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  419 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 498
Cdd:cd14930  310 QKAQTKEQADFALEALAKATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFN 389
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  499 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQKPRQ 578
Cdd:cd14930  390 HTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVAQEQGGHPKFQRPRH 469
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  579 LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiqniqracfydnitglhdppVDRIVG 658
Cdd:cd14930  470 LRDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKD---------------------VEGIVG 528
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  659 LDQVTGITETAFGSayKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEG 738
Cdd:cd14930  529 LEQVSSLGDGPPGG--RPRRGMFRTVGQLYKESLSRLMATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEG 606
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679  739 IRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14930  607 IRICRQGFPNRILFQEFRQRYEILTPNAIPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFR 670
Myosin_head pfam00063
Myosin head (motor domain);
87-802 0e+00

Myosin head (motor domain);


Pssm-ID: 395017  Cd Length: 674  Bit Score: 1098.10  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     87 VEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCML 166
Cdd:pfam00063    1 VEDMVELSYLNEPSVLHNLKKRYKSDLIYTYSGLVLVAVNPYKQLPIYSEDMIKAYRGKRRGELPPHIFAIADEAYRSML 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    167 QDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKdhnippespkpvkhQGELERQLLQANPILESFGNAKTVKN 246
Cdd:pfam00063   81 QDKENQSILISGESGAGKTENTKKIMQYLASVSGSGSAGN--------------VGRLEEQILQSNPILEAFGNAKTVRN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    247 DNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSN-GYI 325
Cdd:pfam00063  147 NNSSRFGKYIEIQFDAKGDIVGGKIETYLLEKSRVVYQAEGERNYHIFYQLLAGASAQLKKELRLTNPKDYHYLSQsGCY 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    326 PIPGQQDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRA 405
Cdd:pfam00063  227 TIDGIDDSEEFKITDKAMDILGFSDEEQMGIFRIVAAILHLGNIEFKKERNDEQAVPDDTENLQKAASLLGIDSTELEKA 306
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    406 ILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLC 485
Cdd:pfam00063  307 LCKRRIKTGRETVSKPQNVEQANYARDALAKAIYSRLFDWLVDRINKSLDVKTIEKASFIGVLDIYGFEIFEKNSFEQLC 386
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    486 INYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIERPanPPGVLALLDEECWFPKATDKTFVEKLVQ 565
Cdd:pfam00063  387 INYVNEKLQQFFNHHMFKLEQEEYVREGIEWTFIDFG-DNQPCIDLIEKK--PLGILSLLDEECLFPKATDQTFLDKLYS 463
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    566 EQGTHSKFQKPRQlKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEiqniqracfydni 645
Cdd:pfam00063  464 TFSKHPHFQKPRL-QGETHFIIKHYAGDVEYNVEGFLEKNKDPLNDDLVSLLKSSSDPLLAELFPDY------------- 529
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    646 tglhdppvDRIVGLDQVTGITETafgsAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHL 725
Cdd:pfam00063  530 --------ETAESAAANESGKST----PKRTKKKRFITVGSQFKESLGELMKTLNSTNPHYIRCIKPNEKKRAGVFDNSL 597
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679    726 VLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:pfam00063  598 VLHQLRCNGVLEGIRIRRAGFPNRITFQEFVQRYRILAPKTWPKWKGDAKKGCEAILQSLNLDKEEYQFGKTKIFFR 674
MYSc smart00242
Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical ...
80-814 0e+00

Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.


Pssm-ID: 214580 [Multi-domain]  Cd Length: 677  Bit Score: 1013.62  E-value: 0e+00
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679      80 NPPKFSKVEDMAELTCLNEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISE 159
Cdd:smart00242    1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     160 SAYRCMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGrkdhnippespkpvkhQGELERQLLQANPILESFG 239
Cdd:smart00242   81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLASVSGSNTE----------------VGSVEDQILESNPILEAFG 144
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     240 NAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRF 319
Cdd:smart00242  145 NAKTLRNNNSSRFGKFIEIHFDAKGKIIGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRY 224
                           250       260       270       280       290       300       310       320
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     320 LSNG-YIPIPGQQDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENT-VAQKLCHLLGM 397
Cdd:smart00242  225 LNQGgCLTVDGIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKeELSNAAELLGV 304
                           330       340       350       360       370       380       390       400
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     398 NVMEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFE 477
Cdd:smart00242  305 DPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINQSLS-FKDGSTYFIGVLDIYGFEIFE 383
                           410       420       430       440       450       460       470       480
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     478 LNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLALLDEECWFPKATDK 557
Cdd:smart00242  384 VNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFF-DNQDCIDLIE--KKPPGILSLLDEECRFPKGTDQ 460
                           490       500       510       520       530       540       550       560
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     558 TFVEKLVQEQGTHSKFQKPRQlKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIQNiq 637
Cdd:smart00242  461 TFLEKLNQHHKKHPHFSKPKK-KGRTEFIIKHYAGDVTYDVTGFLEKNKDTLSDDLIELLQSSKNPLIASLFPSGVSN-- 537
                           570       580       590       600       610       620       630       640
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     638 racfydnitglhdppvdrivgldqvtgitetafgsayKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKR 717
Cdd:smart00242  538 -------------------------------------AGSKKRFQTVGSQFKEQLNELMDTLNSTNPHFIRCIKPNEEKK 580
                           650       660       670       680       690       700       710       720
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679     718 AGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQS 797
Cdd:smart00242  581 PGDFDSSLVLHQLRYLGVLENIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKKACEALLQSLGLDEDEYQLGKT 660
                           730
                    ....*....|....*..
gi 45382679     798 KIFFRAGVLAHLEEERD 814
Cdd:smart00242  661 KVFLRPGQLAELEELRE 677
COG5022 COG5022
Myosin heavy chain [General function prediction only];
36-1379 0e+00

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 912.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   36 VWIPSERHGFEAASIKEERGDEVLVELA---ENGKKALVNKDDIQ--KMNPPKFSKVEDMAELTCLNEASVLHNLKDRYY 110
Cdd:COG5022   12 CWIPDEEKGWIWAEIIKEAFNKGKVTEEgkkEDGESVSVKKKVLGndRIKLPKFDGVDDLTELSYLNEPAVLHNLEKRYN 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  111 SGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGESGAGKTENTKK 190
Cdd:COG5022   92 NGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKR 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  191 VIQYLAHVASSHkgrkdhniPPESpkpvkhqGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGAN 270
Cdd:COG5022  172 IMQYLASVTSSS--------TVEI-------SSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAK 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  271 IETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIP-IPGQQDKDNFQETMEAMHIMGFS 349
Cdd:COG5022  237 IETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDkIDGIDDAKEFKITLDALKTIGID 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  350 HDEILSMLKVVSSVLQFGNISFKKERNtDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYVQKAQTKEQADF 429
Cdd:COG5022  317 EEEQDQIFKILAAILHIGNIEFKEDRN-GAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALA 395
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  430 AVEALAKATYERLFRWLVHRINKALDRTKRQGaSFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEY 509
Cdd:COG5022  396 IRDSLAKALYSNLFDWIVDRINKSLDHSAAAS-NFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEY 474
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  510 QREGIEWNFIDFgLDLQPCIDLIERpANPPGVLALLDEECWFPKATDKTFVEKLVQ--EQGTHSKFQKPRQLKDKadFCI 587
Cdd:COG5022  475 VKEGIEWSFIDY-FDNQPCIDLIEK-KNPLGILSLLDEECVMPHATDESFTSKLAQrlNKNSNPKFKKSRFRDNK--FVV 550
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  588 IHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEiQNIQracfydnitglhdppvdrivgldqvtgite 667
Cdd:COG5022  551 KHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDE-ENIE------------------------------ 599
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  668 tafgsayktKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFP 747
Cdd:COG5022  600 ---------SKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFP 670
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  748 NRIVFQEFRQRYEILTPNA----IPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFRAGVLAHLEEERDLKITDIIIF 823
Cdd:COG5022  671 SRWTFDEFVQRYRILSPSKswtgEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATR 750
                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  824 FQAVCRGYLARKAFAKKQQQLSALKILQRNCAAYLKLRHWQWWRVFTKVKPLLQVTRQEEELQAKDEELMKVKEKqtkve 903
Cdd:COG5022  751 IQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKT----- 825
                        890       900       910       920       930       940       950       960
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  904 aeleemerkhqqlLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVeeeeernQILQNEKKKMQGHI 983
Cdd:COG5022  826 -------------IKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYL-------QSAQRVELAERQLQ 885
                        970       980       990      1000      1010      1020      1030      1040
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  984 QDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTS--QLAEEEEKAKNLAKLKN 1061
Cdd:COG5022  886 ELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPsiEYVKLPELNKLHEVESK 965
                       1050      1060      1070      1080      1090      1100      1110      1120
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1062 KQEmMITDLEERLKKEEKTRQELEKAKRKLDG---ETTDLQDQIAELQAQIEELKiQLAKKEEELQAALARGDEEavqkn 1138
Cdd:COG5022  966 LKE-TSEEYEDLLKKSTILVREGNKANSELKNfkkELAELSKQYGALQESTKQLK-ELPVEVAELQSASKIISSE----- 1038
                       1130      1140      1150      1160      1170      1180      1190      1200
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1139 nalkviRELQAQIAELQEdlesekaSRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEET 1218
Cdd:COG5022 1039 ------STELSILKPLQK-------LKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTN 1105
                       1210      1220      1230      1240      1250      1260      1270      1280
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1219 KNH--EAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACevkVLQQVKAESEHKRKKLDAQVQELT 1296
Cdd:COG5022 1106 RNLvkPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDG---LFWEANLEALPSPPPFAALSEKRL 1182
                       1290      1300      1310      1320      1330      1340      1350      1360
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1297 AKVTEGERLRVELAEKANKLQNELDNVSS----------LLEEAEKKGI------KFAKDAASLESQLQDTQELLQEETR 1360
Cdd:COG5022 1183 YQSALYDEKSKLSSSEVNDLKNELIALFSkifsgwprgdKLKKLISEGWvpteysTSLKGFNNLNKKFDTPASMSNEKLL 1262
                       1370
                 ....*....|....*....
gi 45382679 1361 QKLNLSSRIRQLEEEKNNL 1379
Cdd:COG5022 1263 SLLNSIDNLLSSYKLEEEV 1281
MYSc cd00124
Myosin motor domain superfamily; Myosin motor domain. The catalytic (head) domain has ATPase ...
99-802 0e+00

Myosin motor domain superfamily; Myosin motor domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276950  Cd Length: 633  Bit Score: 859.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRH-EMPPHIYAISESAYRCMLQDREDQSILCT 177
Cdd:cd00124    1 AAILHNLRERYARDLIYTYVGDILVAVNPFKWLPLYSEEVMEKYRGKGRSaDLPPHVFAVADAAYRAMLRDGQNQSILIS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  178 GESGAGKTENTKKVIQYLAHVASSHKGRKDhnippespkpvKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIR 257
Cdd:cd00124   81 GESGAGKTETTKLVLKYLAALSGSGSSKSS-----------SSASSIEQQILQSNPILEAFGNAKTVRNDNSSRFGKFIE 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  258 INFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFL-----SNGYIPIPGQQD 332
Cdd:cd00124  150 LQFDPTGRLVGASIETYLLEKSRVVSQAPGERNFHIFYQLLAGLSDGAREELKLELLLSYYYLndylnSSGCDRIDGVDD 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  333 KDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNT--DQASMPENTVAQKLCHLLGMNVMEFTRAILTPR 410
Cdd:cd00124  230 AEEFQELLDALDVLGFSDEEQDSIFRILAAILHLGNIEFEEDEEDedSSAEVADDESLKAAAKLLGVDAEDLEEALTTRT 309
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  411 IKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQ-GASFIGILDIAGFEIFELNSFEQLCINYT 489
Cdd:cd00124  310 IKVGGETITKPLTVEQAEDARDALAKALYSRLFDWLVNRINAALSPTDAAeSTSFIGILDIFGFENFEVNSFEQLCINYA 389
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  490 NEKLQQLFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIERPanPPGVLALLDEECWFPKATDKTFVEKLVQEQGT 569
Cdd:cd00124  390 NEKLQQFFNQHVFKLEQEEYEEEGIDWSFIDF-PDNQDCLDLIEGK--PLGILSLLDEECLFPKGTDATFLEKLYSAHGS 466
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  570 HSKFQKPRQLKDKAdFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDkfvaelwkdeiqniqracfydnitglh 649
Cdd:cd00124  467 HPRFFSKKRKAKLE-FGIKHYAGDVTYDADGFLEKNKDTLPPDLVDLLRSGSQ--------------------------- 518
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  650 dppvdrivgldqvtgitetafgsayktkkgmfrtvgqlYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQ 729
Cdd:cd00124  519 --------------------------------------FRSQLDALMDTLNSTQPHFVRCIKPNDEKKPGLFDPELVLEQ 560
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679  730 LRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd00124  561 LRCAGVLEAVRIRRAGYPVRLPFDEFLKRYRILAPGATEKASDSKKAAVLALLLLLKLDSSGYQLGKTKVFLR 633
MYSc_Myh7b cd14927
class II myosin heavy chain 7b, motor domain; Myosin motor domain of cardiac muscle, beta ...
99-802 0e+00

class II myosin heavy chain 7b, motor domain; Myosin motor domain of cardiac muscle, beta myosin heavy chain 7b (also called KIAA1512, dJ756N5.1, MYH14, MHC14). MYH7B is a slow-twitch myosin. Mutations in this gene result in one form of autosomal dominant hearing impairment. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276953 [Multi-domain]  Cd Length: 676  Bit Score: 783.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14927    1 ASVLHNLRRRYSRWMIYTYSGLFCVTVNPYKWLPVYTAPVVAAYKGKRRSEAPPHIYAIADNAYNDMLRNRENQSMLITG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKGRKDHNIPPESpkpvKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14927   81 ESGAGKTVNTKRVIQYFAIVAALGDGPGKKAQFLAT----KTGGTLEDQIIEANPAMEAFGNAKTLRNDNSSRFGKFIRI 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKsDLLLEGFN--NYRFLSNGYIPIPGQQDKDNF 336
Cdd:cd14927  157 HFGPTGKLASADIDIYLLEKSRVIFQQPGERSYHIYYQILSGKKPELQ-DMLLVSMNpyDYHFCSQGVTTVDNMDDGEEL 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  337 QETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRD 416
Cdd:cd14927  236 MATDHAMDILGFSPDEKYGCYKIVGAIMHFGNMKFKQKQREEQAEADGTESADKAAYLMGVSSADLLKGLLHPRVKVGNE 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  417 YVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQL 496
Cdd:cd14927  316 YVTKGQSVEQVVYAVGALAKATYDRMFKWLVSRINQTLD-TKLPRQFFIGVLDIAGFEIFEFNSFEQLCINFTNEKLQQF 394
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  497 FNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLVQEQ-GTHSKFQK 575
Cdd:cd14927  395 FNHHMFILEQEEYKREGIEWVFIDFGLDLQACIDLIEKPL---GILSILEEECMFPKASDASFKAKLYDNHlGKSPNFQK 471
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  576 PR---QLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWkdeiQNIQRACFYDnitglhdpp 652
Cdd:cd14927  472 PRpdkKRKYEAHFEVVHYAGVVPYNIVGWLDKNKDPLNETVVAIFQKSQNKLLATLY----ENYVGSDSTE--------- 538
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  653 vdrivglDQVTGITETafgsayKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRC 732
Cdd:cd14927  539 -------DPKSGVKEK------RKKAASFQTVSQLHKENLNKLMTNLRATQPHFVRCIIPNETKTPGVMDPFLVLHQLRC 605
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45382679  733 NGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPK-GFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14927  606 NGVLEGIRICRKGFPNRILYADFKQRYRILNPSAIPDdKFVDSRKATEKLLGSLDIDHTQYQFGHTKVFFK 676
MYSc_Myh3 cd14913
class II myosin heavy chain 3, motor domain; Myosin motor domain of fetal skeletal muscle ...
100-802 0e+00

class II myosin heavy chain 3, motor domain; Myosin motor domain of fetal skeletal muscle myosin heavy chain 3 (MYHC-EMB, MYHSE1, HEMHC, SMHCE) in tetrapods including mammals, lizards, and frogs. This gene is a member of the MYH family and encodes a protein with an IQ domain and a myosin head-like domain. Mutations in this gene have been associated with two congenital contracture (arthrogryposis) syndromes, Freeman-Sheldon syndrome and Sheldon-Hall syndrome. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276878 [Multi-domain]  Cd Length: 668  Bit Score: 764.59  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGE 179
Cdd:cd14913    2 AVLYNLKDRYTSWMIYTYSGLFCVTVNPYKWLPVYNPEVVEGYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  180 SGAGKTENTKKVIQYLAHVASShkgrkdhnIPPESPKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRIN 259
Cdd:cd14913   82 SGAGKTVNTKRVIQYFATIAAT--------GDLAKKKDSKMKGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIH 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  260 FDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLkSDLLLEGFN--NYRFLSNGYIPIPGQQDKDNFQ 337
Cdd:cd14913  154 FGTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQILSNKKPEL-IELLLITTNpyDYPFISQGEILVASIDDAEELL 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  338 ETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDY 417
Cdd:cd14913  233 ATDSAIDILGFTPEEKSGLYKLTGAVMHYGNMKFKQKQREEQAEPDGTEVADKTAYLMGLNSSDLLKALCFPRVKVGNEY 312
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  418 VQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLF 497
Cdd:cd14913  313 VTKGQTVDQVHHAVNALSKSVYEKLFLWMVTRINQQLD-TKLPRQHFIGVLDIAGFEIFEYNSLEQLCINFTNEKLQQFF 391
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  498 NHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLV-QEQGTHSKFQKP 576
Cdd:cd14913  392 NHHMFVLEQEEYKKEGIEWTFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLYdQHLGKSNNFQKP 468
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  577 RQLKDKAD--FCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELwkdeiqniqracfYDNITGLhDPPVD 654
Cdd:cd14913  469 KVVKGRAEahFSLIHYAGTVDYSVSGWLEKNKDPLNETVVGLYQKSSNRLLAHL-------------YATFATA-DADSG 534
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  655 RivgldqvtgitetafGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNG 734
Cdd:cd14913  535 K---------------KKVAKKKGSSFQTVSALFRENLNKLMSNLRTTHPHFVRCIIPNETKTPGAMEHSLVLHQLRCNG 599
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679  735 VLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKG-FMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14913  600 VLEGIRICRKGFPNRILYGDFKQRYRVLNASAIPEGqFIDSKKACEKLLASIDIDHTQYKFGHTKVFFK 668
MYSc_Myh1_insects_crustaceans cd14909
class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle ...
99-802 0e+00

class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle myosin heavy chain 1 (also called MYHSA1, MYHa, MyHC-2X/D, MGC133384) in insects and crustaceans. Myh1 is a type I skeletal muscle myosin that in Humans is encoded by the MYH1 gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276874  Cd Length: 666  Bit Score: 743.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14909    1 ASVLHNLRQRYYAKLIYTYSGLFCVAINPYKRYPVYTNRCAKMYRGKRRNEVPPHIFAISDGAYVDMLTNHVNQSMLITG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKgrkdhnippeSPKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14909   81 ESGAGKTENTKKVIAYFATVGASKK----------TDEAAKSKGSLEDQVVQTNPVLEAFGNAKTVRNDNSSRFGKFIRI 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLL-EGFNNYRFLSNGYIPIPGQQDKDNFQ 337
Cdd:cd14909  151 HFGPTGKLAGADIETYLLEKARVISQQSLERSYHIFYQIMSGSVPGVKEMCLLsDNIYDYYIVSQGKVTVPNVDDGEEFS 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  338 ETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDY 417
Cdd:cd14909  231 LTDQAFDILGFTKQEKEDVYRITAAVMHMGGMKFKQRGREEQAEQDGEEEGGRVSKLFGCDTAELYKNLLKPRIKVGNEF 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  418 VQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLF 497
Cdd:cd14909  311 VTQGRNVQQVTNSIGALCKGVFDRLFKWLVKKCNETLD-TQQKRQHFIGVLDIAGFEIFEYNGFEQLCINFTNEKLQQFF 389
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  498 NHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLVQEQ-GTHSKFQKP 576
Cdd:cd14909  390 NHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIEKPM---GILSILEEESMFPKATDQTFSEKLTNTHlGKSAPFQKP 466
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  577 RQLK---DKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIQNiqracfydnitglhdppv 653
Cdd:cd14909  467 KPPKpgqQAAHFAIAHYAGCVSYNITGWLEKNKDPLNDTVVDQFKKSQNKLLIEIFADHAGQ------------------ 528
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  654 drivgldqvTGITETAFGSAYKtKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCN 733
Cdd:cd14909  529 ---------SGGGEQAKGGRGK-KGGGFATVSSAYKEQLNSLMTTLRSTQPHFVRCIIPNEMKQPGVVDAHLVMHQLTCN 598
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679  734 GVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIpKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14909  599 GVLEGIRICRKGFPNRMMYPDFKMRYKILNPAGI-QGEEDPKKAAEIILESIALDPDQYRLGHTKVFFR 666
MYSc_Myh16 cd14934
class II myosin heavy chain 16, motor domain; Myosin motor domain of myosin heavy chain 16 ...
99-802 0e+00

class II myosin heavy chain 16, motor domain; Myosin motor domain of myosin heavy chain 16 pseudogene (also called MHC20, MYH16, and myh5), encoding a sarcomeric myosin heavy chain expressed in nonhuman primate masticatory muscles, is inactivated in humans. This cd contains Myh16 in mammals. MYH16 has intermediate fibres between that of slow type 1 and fast 2B fibres, but exert more force than any other fibre type examined. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Some of the data used for this classification were produced by the CyMoBase team at the Max-Planck-Institute for Biophysical Chemistry. The sequence names are composed of the species abbreviation followed by the protein abbreviation and optional protein classifier and variant designations.


Pssm-ID: 276896 [Multi-domain]  Cd Length: 659  Bit Score: 732.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14934    1 ASVLDNLRQRYTNMRIYTYSGLFCVTVNPYKWLPIYGARVANMYKGKKRTEMPPHLFSISDNAYHDMLMDRENQSMLITG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKGRKDhnippespkpvkHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14934   81 ESGAGKTENTKKVIQYFANIGGTGKQSSD------------GKGSLEDQIIQANPVLEAFGNAKTTRNNNSSRFGKFIRI 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHL-KSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQ 337
Cdd:cd14934  149 HFGTTGKLAGADIESYLLEKSRVISQQAAERGYHIFYQILSNKKPELiESLLLVPNPKEYHWVSQGVTVVDNMDDGEELQ 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  338 ETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDY 417
Cdd:cd14934  229 ITDVAFDVLGFSAEEKIGVYKLTGGIMHFGNMKFKQKPREEQAEVDTTEVADKVAHLMGLNSGELQKGITRPRVKVGNEF 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  418 VQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLF 497
Cdd:cd14934  309 VQKGQNMEQCNNSIGALGKAVYDKMFKWLVVRINKTLD-TKMQRQFFIGVLDIAGFEIFEFNSFEQLCINFTNEKLQQFF 387
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  498 NHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLVQEQ-GTHSKFQKP 576
Cdd:cd14934  388 NHHMFVLEQEEYKREGIEWVFIDFGLDLQACIDLLEKPM---GIFSILEEQCVFPKATDATFKAALYDNHlGKSSNFLKP 464
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  577 RQLKDK---ADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSdKFVAELWKDEiqniqracfydnitglhdppv 653
Cdd:cd14934  465 KGGKGKgpeAHFELVHYAGTVGYNITGWLEKNKDPLNETVVGLFQKSS-LGLLALLFKE--------------------- 522
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  654 drivgldqvtgitETAFGSAYKTKKG-MFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRC 732
Cdd:cd14934  523 -------------EEAPAGSKKQKRGsSFMTVSNFYREQLNKLMTTLHSTAPHFVRCIVPNEFKQSGVVDAHLIMHQLAC 589
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  733 NGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14934  590 NGVLEGIRICRKGFPNRLQYPEFKQRYQVLNPNVIPQGFVDNKKASELLLGSIDLDVNEYKIGHTKVFFR 659
MYSc_Myo5 cd01380
class V myosin, motor domain; Myo5, also called heavy chain 12, myoxin, are dimeric myosins ...
100-802 0e+00

class V myosin, motor domain; Myo5, also called heavy chain 12, myoxin, are dimeric myosins that transport a variety of intracellular cargo processively along actin filaments, such as melanosomes, synaptic vesicles, vacuoles, and mRNA. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. It also contains a IQ domain and a globular DIL domain. Myosin V is a class of actin-based motor proteins involved in cytoplasmic vesicle transport and anchorage, spindle-pole alignment and mRNA translocation. The protein encoded by this gene is abundant in melanocytes and nerve cells. Mutations in this gene cause Griscelli syndrome type-1 (GS1), Griscelli syndrome type-3 (GS3) and neuroectodermal melanolysosomal disease, or Elejalde disease. Multiple alternatively spliced transcript variants encoding different isoforms have been reported, but the full-length nature of some variants has not been determined. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Note that the Dictyostelium myoVs are not contained in this child group. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276831 [Multi-domain]  Cd Length: 629  Bit Score: 716.24  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSG-LIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd01380    2 AVLHNLKVRFCQRnAIYTYCGIVLVAINPYEDLPIYGEDIIQAYSGQNMGELDPHIFAIAEEAYRQMARDEKNQSIIVSG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKGrkdhnippESpkpvkhqgELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd01380   82 ESGAGKTVSAKYAMRYFATVGGSSSG--------ET--------QVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIEI 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNG-YIPIPGQQDKDNFQ 337
Cdd:cd01380  146 LFDKNYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCAAASLPELKELHLGSAEDFFYTNQGgSPVIDGVDDAAEFE 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  338 ETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDY 417
Cdd:cd01380  226 ETRKALTLLGISEEEQMEIFRILAAILHLGNVEIKATRNDSASISPDDEHLQIACELLGIDESQLAKWLCKRKIVTRSEV 305
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  418 VQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGA-SFIGILDIAGFEIFELNSFEQLCINYTNEKLQQL 496
Cdd:cd01380  306 IVKPLTLQQAIVARDALAKHIYAQLFDWIVDRINKALASPVKEKQhSFIGVLDIYGFETFEVNSFEQFCINYANEKLQQQ 385
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  497 FNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIErpaNPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSK--FQ 574
Cdd:cd01380  386 FNQHVFKLEQEEYVKEEIEWSFIDF-YDNQPCIDLIE---GKLGILDLLDEECRLPKGSDENWAQKLYNQHLKKPNkhFK 461
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  575 KPRQLKDKadFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSsdkfvaelwkdeiqniqracfydnitglhdppvd 654
Cdd:cd01380  462 KPRFSNTA--FIVKHFADDVEYQVEGFLEKNRDTVSEEHLNVLKAS---------------------------------- 505
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  655 rivgldqvtgitetafgsayKTKKgmfRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNG 734
Cdd:cd01380  506 --------------------KNRK---KTVGSQFRDSLILLMETLNSTTPHYVRCIKPNDEKLPFTFDPKRVVQQLRACG 562
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 45382679  735 VLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGfMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd01380  563 VLETIRISAAGFPSRWTYEEFFSRYRVLLPSKEWLR-DDKKKTCENILENLILDPDKYQFGKTKIFFR 629
MYSc_Myh15_mammals cd14929
class II myosin heavy chain 15, motor domain; Myosin motor domain of sarcomeric myosin heavy ...
99-802 0e+00

class II myosin heavy chain 15, motor domain; Myosin motor domain of sarcomeric myosin heavy chain 15 in mammals (also called KIAA1000) . MYH15 is a slow-twitch myosin. Myh15 is a ventricular myosin heavy chain. Myh15 is absent in embryonic and fetal muscles and is found in orbital layer of extraocular muscles at birth. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276892 [Multi-domain]  Cd Length: 662  Bit Score: 711.75  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14929    1 ASVLHTLRRRYDHWMIYTYSGLFCVTINPYKWLPVYQKEVMAAYKGKRRSEAPPHIFAVANNAFQDMLHNRENQSILFTG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASShkgrkdhnippesPKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14929   81 ESGAGKTVNTKHIIQYFATIAAM-------------IESKKKLGALEDQIMQANPVLEAFGNAKTLRNDNSSRFGKFIRM 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEhlKSDLLLEGFN--NYRFLSNGYIPIPGQQDKDNF 336
Cdd:cd14929  148 HFGARGMLSSADIDIYLLEKSRVIFQQPGERNYHIFYQILSGKKE--LRDLLLVSANpsDFHFCSCGAVAVESLDDAEEL 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  337 QETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRD 416
Cdd:cd14929  226 LATEQAMDILGFLPDEKYGCYKLTGAIMHFGNMKFKQKPREEQLEADGTENADKAAFLMGINSSELVKGLIHPRIKVGNE 305
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  417 YVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQL 496
Cdd:cd14929  306 YVTRSQNIEQVTYAVGALSKSIYERMFKWLVARINRVLD-AKLSRQFFIGILDITGFEILDYNSLEQLCINFTNEKLQQF 384
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  497 FNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLVQEQ-GTHSKFQK 575
Cdd:cd14929  385 FNQHMFVLEQEEYRKEGIDWVSIDFGLDLQACIDLIEKPM---GIFSILEEECMFPKATDLTFKTKLFDNHfGKSVHFQK 461
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  576 PRQLKDK--ADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIqniqracfydnITGlhdppv 653
Cdd:cd14929  462 PKPDKKKfeAHFELVHYAGVVPYNISGWLEKNKDLLNETVVAVFQKSSNRLLASLFENYI-----------STD------ 524
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  654 drivgldqvtgiTETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCN 733
Cdd:cd14929  525 ------------SAIQFGEKKRKKGASFQTVASLHKENLNKLMTNLKSTAPHFVRCINPNVNKIPGVLDPYLVLQQLRCN 592
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  734 GVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKG-FMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14929  593 GVLEGIRICREGFPNRLLYADFKQRYCILNPRTFPKSkFVSSRKAAEELLGSLEIDHTQYRFGITKVFFK 662
MYSc_Myh7 cd14917
class II myosin heavy chain 7, motor domain; Myosin motor domain of beta (or slow) type I ...
100-802 0e+00

class II myosin heavy chain 7, motor domain; Myosin motor domain of beta (or slow) type I cardiac muscle myosin heavy chain 7 (also called CMH1, MPD1, and CMD1S). Muscle myosin is a hexameric protein containing 2 heavy chain subunits, 2 alkali light chain subunits, and 2 regulatory light chain subunits. It is expressed predominantly in normal human ventrical and in skeletal muscle tissues rich in slow-twitch type I muscle fibers. Changes in the relative abundance of this protein and the alpha (or fast) heavy subunit of cardiac myosin correlate with the contractile velocity of cardiac muscle. Its expression is also altered during thyroid hormone depletion and hemodynamic overloading. Mutations in this gene are associated with familial hypertrophic cardiomyopathy, myosin storage myopathy, dilated cardiomyopathy, and Laing early-onset distal myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276881 [Multi-domain]  Cd Length: 668  Bit Score: 704.94  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGE 179
Cdd:cd14917    2 AVLYNLKERYASWMIYTYSGLFCVTVNPYKWLPVYNAEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  180 SGAGKTENTKKVIQYLAHVAS-SHKGRKDhnippESPKpvkhQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14917   82 SGAGKTVNTKRVIQYFAVIAAiGDRSKKD-----QTPG----KGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRI 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLkSDLLLEGFN--NYRFLSNGYIPIPGQQDKDNF 336
Cdd:cd14917  153 HFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPEL-LDMLLITNNpyDYAFISQGETTVASIDDAEEL 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  337 QETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRD 416
Cdd:cd14917  232 MATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKQKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNE 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  417 YVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQL 496
Cdd:cd14917  312 YVTKGQNVQQVIYATGALAKAVYEKMFNWMVTRINATLE-TKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQF 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  497 FNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLVQEQ-GTHSKFQK 575
Cdd:cd14917  391 FNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEKPM---GIMSILEEECMFPKATDMTFKAKLFDNHlGKSNNFQK 467
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  576 PRQLKDK--ADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELwkdeiqniqracfYDNITGLhDPPV 653
Cdd:cd14917  468 PRNIKGKpeAHFSLIHYAGTVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSNL-------------FANYAGA-DAPI 533
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  654 DRIVGldqvtgitetafgsayKTKKG-MFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRC 732
Cdd:cd14917  534 EKGKG----------------KAKKGsSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRC 597
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45382679  733 NGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKG-FMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14917  598 NGVLEGIRICRKGFPNRILYGDFRQRYRILNPAAIPEGqFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFK 668
MYSc_Myh8 cd14918
class II myosin heavy chain 8, motor domain; Myosin motor domain of perinatal skeletal muscle ...
101-802 0e+00

class II myosin heavy chain 8, motor domain; Myosin motor domain of perinatal skeletal muscle myosin heavy chain 8 (also called MyHC-peri, MyHC-pn). Myosin is a hexameric protein composed of a pair of myosin heavy chains (MYH) and two pairs of nonidentical light chains. A mutation in this gene results in trismus-pseudocamptodactyly syndrome. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276882 [Multi-domain]  Cd Length: 668  Bit Score: 685.31  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  101 VLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGES 180
Cdd:cd14918    3 VLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVAAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGES 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  181 GAGKTENTKKVIQYLAHVASSHKGRKDHNippespkpVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRINF 260
Cdd:cd14918   83 GAGKTVNTKRVIQYFATIAVTGEKKKEES--------GKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHF 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  261 DVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLL-EGFNNYRFLSNGYIPIPGQQDKDNFQET 339
Cdd:cd14918  155 GTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQITSNKKPDLIEMLLItTNPYDYAFVSQGEITVPSIDDQEELMAT 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  340 MEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYVQ 419
Cdd:cd14918  235 DSAIDILGFTPEEKVSIYKLTGAVMHYGNMKFKQKQREEQAEPDGTEVADKAAYLQSLNSADLLKALCYPRVKVGNEYVT 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  420 KAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNH 499
Cdd:cd14918  315 KGQTVQQVYNAVGALAKAVYEKMFLWMVTRINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNH 393
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  500 TMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLV-QEQGTHSKFQKPRQ 578
Cdd:cd14918  394 HMFVLEQEEYKKEGIEWTFIDFGMDLAACIELIEKPL---GIFSILEEECMFPKATDTSFKNKLYdQHLGKSANFQKPKV 470
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  579 LKDKAD--FCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKdeiqniqracfydnitglhdppvdri 656
Cdd:cd14918  471 VKGKAEahFSLIHYAGTVDYNITGWLDKNKDPLNDTVVGLYQKSAMKTLASLFS-------------------------- 524
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  657 vglDQVTGITETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVL 736
Cdd:cd14918  525 ---TYASAEADSGAKKGAKKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVL 601
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679  737 EGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKG-FMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14918  602 EGIRICRKGFPSRILYGDFKQRYKVLNASAIPEGqFIDSKKASEKLLASIDIDHTQYKFGHTKVFFK 668
MYSc_Myh13 cd14923
class II myosin heavy chain 13, motor domain; Myosin motor domain of skeletal muscle myosin ...
100-802 0e+00

class II myosin heavy chain 13, motor domain; Myosin motor domain of skeletal muscle myosin heavy chain 13 (also called MyHC-eo) in mammals, chicken, and green anole. Myh13 is a myosin whose expression is restricted primarily to the extrinsic eye muscles which are specialized for function in eye movement. Class II myosins, also called conventional myosins, are the myosin type responsible for producing muscle contraction in muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276887 [Multi-domain]  Cd Length: 671  Bit Score: 683.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGE 179
Cdd:cd14923    2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVAAYRGKKRQEAPPHIFSISDNAYQFMLTDRDNQSILITGE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  180 SGAGKTENTKKVIQYLAHVASSHKGRKDHnippespKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRIN 259
Cdd:cd14923   82 SGAGKTVNTKRVIQYFATIAVTGDKKKEQ-------QPGKMQGTLEDQIIQANPLLEAFGNAKTVRNDNSSRFGKFIRIH 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  260 FDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLkSDLLLEGFN--NYRFLSNGYIPIPGQQDKDNFQ 337
Cdd:cd14923  155 FGATGKLASADIETYLLEKSRVTFQLSSERSYHIFYQIMSNKKPEL-IDLLLISTNpfDFPFVSQGEVTVASIDDSEELL 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  338 ETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDY 417
Cdd:cd14923  234 ATDNAIDILGFSSEEKVGIYKLTGAVMHYGNMKFKQKQREEQAEPDGTEVADKAGYLMGLNSAEMLKGLCCPRVKVGNEY 313
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  418 VQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLF 497
Cdd:cd14923  314 VTKGQNVQQVTNSVGALAKAVYEKMFLWMVTRINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFF 392
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  498 NHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLV-QEQGTHSKFQKP 576
Cdd:cd14923  393 NHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLYdQHLGKSNNFQKP 469
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  577 RQLKDKAD--FCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELwkdeiqniqracfYDNITGlhdppvd 654
Cdd:cd14923  470 KPAKGKAEahFSLVHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSSLKLLSFL-------------FSNYAG------- 529
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  655 rivgldqvtgiTETAFGSAY----KTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQL 730
Cdd:cd14923  530 -----------AEAGDSGGSkkggKKKGSSFQTVSAVFRENLNKLMTNLRSTHPHFVRCLIPNETKTPGVMDHYLVMHQL 598
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679  731 RCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKG-FMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14923  599 RCNGVLEGIRICRKGFPSRILYADFKQRYRILNASAIPEGqFIDSKNASEKLLNSIDVDREQYRFGHTKVFFK 671
MYSc_Myh2_mammals cd14912
class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle ...
100-802 0e+00

class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle myosin heavy chain 2 (also called MYH2A, MYHSA2, MyHC-IIa, MYHas8, MyHC-2A) in mammals. Mutations in this gene results in inclusion body myopathy-3 and familial congenital myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276877 [Multi-domain]  Cd Length: 673  Bit Score: 681.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGE 179
Cdd:cd14912    2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  180 SGAGKTENTKKVIQYLAHVASSHKGRKdhnippESPKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRIN 259
Cdd:cd14912   82 SGAGKTVNTKRVIQYFATIAVTGEKKK------EEITSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIH 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  260 FDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLL-EGFNNYRFLSNGYIPIPGQQDKDNFQE 338
Cdd:cd14912  156 FGTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQITSNKKPELIEMLLItTNPYDYPFVSQGEISVASIDDQEELMA 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  339 TMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 418
Cdd:cd14912  236 TDSAIDILGFTNEEKVSIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLQSLNSADLLKALCYPRVKVGNEYV 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  419 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 498
Cdd:cd14912  316 TKGQTVEQVTNAVGALAKAVYEKMFLWMVARINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFN 394
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  499 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLV-QEQGTHSKFQKPR 577
Cdd:cd14912  395 HHMFVLEQEEYKKEGIEWTFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLYeQHLGKSANFQKPK 471
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  578 QLKDKAD--FCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKdeiqniqracfydnitglhdppvdr 655
Cdd:cd14912  472 VVKGKAEahFSLIHYAGVVDYNITGWLDKNKDPLNETVVGLYQKSAMKTLAYLFS------------------------- 526
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  656 ivGLDQVTGitETAFGSAYK--TKKG-MFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRC 732
Cdd:cd14912  527 --GAQTAEG--ASAGGGAKKggKKKGsSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRC 602
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45382679  733 NGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKG-FMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14912  603 NGVLEGIRICRKGFPSRILYADFKQRYKVLNASAIPEGqFIDSKKASEKLLASIDIDHTQYKFGHTKVFFK 673
MYSc_Myh1_mammals cd14910
class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle ...
100-802 0e+00

class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle myosin heavy chain 1 (also called MYHSA1, MYHa, MyHC-2X/D, MGC133384) in mammals. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276875 [Multi-domain]  Cd Length: 671  Bit Score: 679.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGE 179
Cdd:cd14910    2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  180 SGAGKTENTKKVIQYLAHVASSHKGRKdhnippESPKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRIN 259
Cdd:cd14910   82 SGAGKTVNTKRVIQYFATIAVTGEKKK------EEATSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIH 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  260 FDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLL-EGFNNYRFLSNGYIPIPGQQDKDNFQE 338
Cdd:cd14910  156 FGTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQIMSNKKPDLIEMLLItTNPYDYAFVSQGEITVPSIDDQEELMA 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  339 TMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 418
Cdd:cd14910  236 TDSAIEILGFTSDERVSIYKLTGAVMHYGNMKFKQKQREEQAEPDGTEVADKAAYLQNLNSADLLKALCYPRVKVGNEYV 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  419 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 498
Cdd:cd14910  316 TKGQTVQQVYNAVGALAKAVYDKMFLWMVTRINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFN 394
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  499 HTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLVQEQ-GTHSKFQKPR 577
Cdd:cd14910  395 HHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLYEQHlGKSNNFQKPK 471
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  578 QLKDK--ADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKdeiqniqracfydnitglhdppvdr 655
Cdd:cd14910  472 PAKGKveAHFSLIHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSSMKTLALLFS------------------------- 526
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  656 ivglDQVTGITETAFGSAYKTKKG-MFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNG 734
Cdd:cd14910  527 ----GAAAAEAEEGGGKKGGKKKGsSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNG 602
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679  735 VLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKG-FMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14910  603 VLEGIRICRKGFPSRILYADFKQRYKVLNASAIPEGqFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFK 671
MYSc_Myh6 cd14916
class II myosin heavy chain 6, motor domain; Myosin motor domain of alpha (or fast) cardiac ...
100-802 0e+00

class II myosin heavy chain 6, motor domain; Myosin motor domain of alpha (or fast) cardiac muscle myosin heavy chain 6. Cardiac muscle myosin is a hexamer consisting of two heavy chain subunits, two light chain subunits, and two regulatory subunits. This gene encodes the alpha heavy chain subunit of cardiac myosin. Mutations in this gene cause familial hypertrophic cardiomyopathy and atrial septal defect. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276880 [Multi-domain]  Cd Length: 670  Bit Score: 679.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGE 179
Cdd:cd14916    2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  180 SGAGKTENTKKVIQYLAHVAS-SHKGRKDHnippespkPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14916   82 SGAGKTVNTKRVIQYFASIAAiGDRSKKEN--------PNANKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRI 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEgfNN---YRFLSNGYIPIPGQQDKDN 335
Cdd:cd14916  154 HFGATGKLASADIETYLLEKSRVIFQLKAERNYHIFYQILSNKKPELLDMLLVT--NNpydYAFVSQGEVSVASIDDSEE 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  336 FQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGR 415
Cdd:cd14916  232 LLATDSAFDVLGFTAEEKAGVYKLTGAIMHYGNMKFKQKQREEQAEPDGTEDADKSAYLMGLNSADLLKGLCHPRVKVGN 311
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  416 DYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQ 495
Cdd:cd14916  312 EYVTKGQSVQQVYYSIGALAKSVYEKMFNWMVTRINATLE-TKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQ 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  496 LFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLVQEQ-GTHSKFQ 574
Cdd:cd14916  391 FFNHHMFVLEQEEYKKEGIEWEFIDFGMDLQACIDLIEKPM---GIMSILEEECMFPKASDMTFKAKLYDNHlGKSNNFQ 467
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  575 KPRQLKDK--ADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiqniqracfydnitglhdpp 652
Cdd:cd14916  468 KPRNVKGKqeAHFSLVHYAGTVDYNILGWLEKNKDPLNETVVGLYQKSSLKLMATLFST--------------------- 526
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  653 vdrIVGLDqvTGitETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRC 732
Cdd:cd14916  527 ---YASAD--TG--DSGKGKGGKKKGSSFQTVSALHRENLNKLMTNLKTTHPHFVRCIIPNERKAPGVMDNPLVMHQLRC 599
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45382679  733 NGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKG-FMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14916  600 NGVLEGIRICRKGFPNRILYGDFRQRYRILNPAAIPEGqFIDSRKGAEKLLGSLDIDHNQYKFGHTKVFFK 670
MYSc_Myh4 cd14915
class II myosin heavy chain 4, motor domain; Myosin motor domain of skeletal muscle myosin ...
100-802 0e+00

class II myosin heavy chain 4, motor domain; Myosin motor domain of skeletal muscle myosin heavy chain 4 (also called MYH2B, MyHC-2B, MyHC-IIb). Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276879 [Multi-domain]  Cd Length: 671  Bit Score: 671.83  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGE 179
Cdd:cd14915    2 AVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  180 SGAGKTENTKKVIQYLAHVASSHKGRKdhnippESPKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRIN 259
Cdd:cd14915   82 SGAGKTVNTKRVIQYFATIAVTGEKKK------EEAASGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIH 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  260 FDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLkSDLLLEGFNNYRF--LSNGYIPIPGQQDKDNFQ 337
Cdd:cd14915  156 FGATGKLASADIETYLLEKSRVTFQLKAERSYHIFYQIMSNKKPEL-IEMLLITTNPYDFafVSQGEITVPSIDDQEELM 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  338 ETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDY 417
Cdd:cd14915  235 ATDSAVDILGFSADEKVAIYKLTGAVMHYGNMKFKQKQREEQAEPDGTEVADKAAYLTSLNSADLLKALCYPRVKVGNEY 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  418 VQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLF 497
Cdd:cd14915  315 VTKGQTVQQVYNSVGALAKAIYEKMFLWMVTRINQQLD-TKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFF 393
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  498 NHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLVQEQ-GTHSKFQKP 576
Cdd:cd14915  394 NHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPM---GIFSILEEECMFPKATDTSFKNKLYEQHlGKSNNFQKP 470
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  577 RQLKDKAD--FCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKdeiqniqracfydnitglhdppvd 654
Cdd:cd14915  471 KPAKGKAEahFSLVHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSGMKTLAFLFS------------------------ 526
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  655 rivglDQVTGITETAFGSAYKTKKG-MFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCN 733
Cdd:cd14915  527 -----GGQTAEAEGGGGKKGGKKKGsSFQTVSALFRENLNKLMTNLRSTHPHFVRCLIPNETKTPGAMEHELVLHQLRCN 601
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  734 GVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKG-FMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14915  602 GVLEGIRICRKGFPSRILYADFKQRYKVLNASAIPEGqFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFK 671
MYSc_Myo22 cd14883
class XXII myosin, motor domain; These myosins possess an extended neck with multiple IQ ...
100-802 0e+00

class XXII myosin, motor domain; These myosins possess an extended neck with multiple IQ motifs such as found in class V, VIII, XI, and XIII myosins. These myosins are defined by two tandem MyTH4 and FERM domains. The apicomplexan, but not diatom myosins contain 4-6 WD40 repeats near the end of the C-terminal tail which suggests a possible function of these myosins in signal transduction and transcriptional regulation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276849 [Multi-domain]  Cd Length: 661  Bit Score: 640.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGE 179
Cdd:cd14883    2 GINTNLKVRYKKDLIYTYTGSILVAVNPYKELPIYTQDIVKQYFGKRMGALPPHIFALAEAAYTNMQEDGKNQSVIISGE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  180 SGAGKTENTKKVIQYLAHVASSHKgrkdhnippespkpvkhqgELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRIN 259
Cdd:cd14883   82 SGAGKTETTKLILQYLCAVTNNHS-------------------WVEQQILEANTILEAFGNAKTVRNDNSSRFGKFIEVC 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  260 FDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGE--HLKSDLLLEGFNNYRFLS-NGYIPIPGQQDKDNF 336
Cdd:cd14883  143 FDASGHIKGAIIQDYLLEQSRITFQAPGERNYHVFYQLLAGAKHskELKEKLKLGEPEDYHYLNqSGCIRIDNINDKKDF 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  337 QETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKK-ERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGR 415
Cdd:cd14883  223 DHLRLAMNVLGIPEEMQEGIFSVLSAILHLGNLTFEDiDGETGALTVEDKEILKIVAKLLGVDPDKLKKALTIRQINVRG 302
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  416 DYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGaSFIGILDIAGFEIFELNSFEQLCINYTNEKLQQ 495
Cdd:cd14883  303 NVTEIPLKVQEARDNRDAMAKALYSRTFAWLVNHINSCTNPGQKNS-RFIGVLDIFGFENFKVNSFEQLCINYTNEKLHK 381
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  496 LFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIERPanPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQK 575
Cdd:cd14883  382 FFNHYVFKLEQEEYEKEGINWSHIVFT-DNQECLDLIEKP--PLGILKLLDEECRFPKGTDLTYLEKLHAAHEKHPYYEK 458
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  576 PRQLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKdeiqniqracfYDNITGLhdppvdr 655
Cdd:cd14883  459 PDRRRWKTEFGVKHYAGEVTYTVQGFLDKNKDTQQDDLFDLMSRSKNKFVKELFT-----------YPDLLAL------- 520
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  656 iVGLDQVTGITETAFGsaykTKKGMfRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGV 735
Cdd:cd14883  521 -TGLSISLGGDTTSRG----TSKGK-PTVGDTFKHQLQSLVDVLSATQPWYVRCIKPNSLKEPNVFDDELVLAQLRYAGM 594
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679  736 LEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14883  595 LEIIRIRKEGFPIHLTFKEFVDRYLCLDPRARSADHKETCGAVRALMGLGGLPEDEWQVGKTKVFLR 661
MYSc_Myo1 cd01378
class I myosin, motor domain; Myosin I generates movement at the leading edge in cell motility, ...
100-802 0e+00

class I myosin, motor domain; Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. There are 5 myosin subclasses with subclasses c/h, d/g, and a/b have an IQ domain and a TH1 domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276829  Cd Length: 652  Bit Score: 640.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGE 179
Cdd:cd01378    2 AINENLKKRFENDEIYTYIGHVLISVNPFKDLGIYTDEVLESYRGKNRYEVPPHVFALADSAYRNMKSEKENQCVIISGE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  180 SGAGKTENTKKVIQYLAHVASSHKGRKDHnippespkpVKHqgelerQLLQANPILESFGNAKTVKNDNSSRFGKFIRIN 259
Cdd:cd01378   82 SGAGKTEASKRIMQYIAAVSGGSESEVER---------VKD------MLLASNPLLEAFGNAKTLRNDNSSRFGKYMEIQ 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  260 FDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGY-IPIPGQQDKDNFQE 338
Cdd:cd01378  147 FDFKGEPVGGHITNYLLEKSRVVGQIKGERNFHIFYQLLKGASQEYLQELGLQRPEQYYYYSKSGcFDVDGIDDAADFKE 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  339 TMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNtDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVG---R 415
Cdd:cd01378  227 VLNAMKVIGFTEEEQDSIFRILAAILHLGNIQFAEDEE-GNAAISDTSVLDFVAYLLGVDPDQLEKALTHRTIETGgggR 305
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  416 DYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQ 495
Cdd:cd01378  306 SVYEVPLNVEQAAYARDALAKAIYSRLFDWIVERINKSLAAKSGGKKKVIGVLDIYGFEIFEKNSFEQFCINYVNEKLQQ 385
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  496 LFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIErpANPPGVLALLDEECWFP-KATDKTFVEKLVQEQGTHSKFQ 574
Cdd:cd01378  386 IFIELTLKAEQEEYVREGIEWTPIKY-FNNKIICDLIE--EKPPGIFAILDDACLTAgDATDQTFLQKLNQLFSNHPHFE 462
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  575 KPRQLKD--KADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIQniqracfydnitglhdpp 652
Cdd:cd01378  463 CPSGHFElrRGEFRIKHYAGDVTYNVEGFLDKNKDLLFKDLKELMQSSSNPFLRSLFPEGVD------------------ 524
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  653 vdrivgldqvtgitetafgsayKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRC 732
Cdd:cd01378  525 ----------------------LDSKKRPPTAGTKFKNSANALVETLMKKQPSYIRCIKPNDNKSPGEFDEELVLHQVKY 582
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  733 NGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd01378  583 LGLLENVRVRRAGFAYRQTYEKFLERYKLLSPKTWPAWDGTWQGGVESILKDLNIPPEEYQMGKTKIFIR 652
MYSc_Myo8 cd01383
class VIII myosin, motor domain; These plant-specific type VIII myosins has been associated ...
100-802 0e+00

class VIII myosin, motor domain; These plant-specific type VIII myosins has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. It also contains IQ domains Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276834  Cd Length: 647  Bit Score: 639.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRgkKRHEMPPHIYAISESAYRCMLQDREDQSILCTGE 179
Cdd:cd01383    2 SVLHNLEYRYSQDIIYTKAGPVLIAVNPFKDVPLYGNEFITAYR--QKLLDSPHVYAVADTAYREMMRDEINQSIIISGE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  180 SGAGKTENTKKVIQYLAHVASSHKGrkdhnippespkpvkhqgeLERQLLQANPILESFGNAKTVKNDNSSRFGKFIRIN 259
Cdd:cd01383   80 SGAGKTETAKIAMQYLAALGGGSSG-------------------IENEILQTNPILEAFGNAKTLRNDNSSRFGKLIDIH 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  260 FDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLS-NGYIPIPGQQDKDNFQE 338
Cdd:cd01383  141 FDAAGKICGAKIQTYLLEKSRVVQLANGERSYHIFYQLCAGASPALREKLNLKSASEYKYLNqSNCLTIDGVDDAKKFHE 220
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  339 TMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYV 418
Cdd:cd01383  221 LKEALDTVGISKEDQEHIFQMLAAVLWLGNISFQVIDNENHVEVVADEAVSTAASLLGCNANDLMLALSTRKIQAGGDKI 300
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  419 QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFN 498
Cdd:cd01383  301 VKKLTLQQAIDARDALAKAIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFQKNSFEQLCINYANERLQQHFN 380
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  499 HTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQKPRq 578
Cdd:cd01383  381 RHLFKLEQEEYELDGIDWTKVDF-EDNQECLDLIEK--KPLGLISLLDEESNFPKATDLTFANKLKQHLKSNSCFKGER- 456
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  579 lkDKAdFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVaelwkdeiqniqrACFYDNITGLHDPPVDRivg 658
Cdd:cd01383  457 --GGA-FTIRHYAGEVTYDTSGFLEKNRDLLHSDLIQLLSSCSCQLP-------------QLFASKMLDASRKALPL--- 517
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  659 ldqvtgiteTAFGSAYKTKkgmfRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEG 738
Cdd:cd01383  518 ---------TKASGSDSQK----QSVATKFKGQLFKLMQRLENTTPHFIRCIKPNNKQLPGVFDQDLVLQQLRCCGVLEV 584
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679  739 IRICRQGFPNRIVFQEFRQRYEILTPNAIpKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd01383  585 VRISRSGYPTRMTHQEFARRYGFLLPEDV-SASQDPLSTSVAILQQFNILPEMYQVGYTKLFFR 647
MYSc_Myo7 cd01381
class VII myosin, motor domain; These monomeric myosins have been associated with functions in ...
99-802 0e+00

class VII myosin, motor domain; These monomeric myosins have been associated with functions in sensory systems such as vision and hearing. Mammalian myosin VII has a tail with 2 MyTH4 domains, 2 FERM domains, and a SH3 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276832  Cd Length: 648  Bit Score: 603.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd01381    1 AGILRNLLIRYREKLIYTYTGSILVAVNPYQILPIYTAEQIRLYRNKKIGELPPHIFAIADNAYTNMKRNKRDQCVVISG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKgrkdhnippespkpvkhqgELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd01381   81 ESGAGKTESTKLILQYLAAISGQHS-------------------WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDI 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNG-YIPIPGQQDKDNFQ 337
Cdd:cd01381  142 HFNKNGVIEGAKIEQYLLEKSRIVSQAPDERNYHIFYCMLAGLSAEEKKKLELGDASDYYYLTQGnCLTCEGRDDAAEFA 221
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  338 ETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKK--ERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGR 415
Cdd:cd01381  222 DIRSAMKVLMFTDEEIWDIFKLLAAILHLGNIKFEAtvVDNLDASEVRDPPNLERAAKLLEVPKQDLVDALTTRTIFTRG 301
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  416 DYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGAS--FIGILDIAGFEIFELNSFEQLCINYTNEKL 493
Cdd:cd01381  302 ETVVSPLSAEQALDVRDAFVKGIYGRLFIWIVNKINSAIYKPRGTDSSrtSIGVLDIFGFENFEVNSFEQLCINFANENL 381
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  494 QQLFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLI-ERPANppgVLALLDEECWFPKATDKTFVEKLVQEQGTHSK 572
Cdd:cd01381  382 QQFFVRHIFKLEQEEYDKEGINWQHIEF-VDNQDVLDLIaLKPMN---IMSLIDEESKFPKGTDQTMLEKLHSTHGNNKN 457
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  573 FQKPRQLKDKAdFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIqniqracfydnitglhdpp 652
Cdd:cd01381  458 YLKPKSDLNTS-FGINHFAGVVFYDTRGFLEKNRDTFSADLLQLVQSSKNKFLKQLFNEDI------------------- 517
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  653 vdrivgldqvtgitetAFGSAYKTKKgmfRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRC 732
Cdd:cd01381  518 ----------------SMGSETRKKS---PTLSSQFRKSLDQLMKTLSACQPFFVRCIKPNEYKKPMLFDRELCVRQLRY 578
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  733 NGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd01381  579 SGMMETIRIRKAGYPIRHTFEEFVERYRVLVPGIPPAHKTDCRAATRKICCAVLGGDADYQLGKTKIFLK 648
MYSc_Myo11 cd01384
class XI myosin, motor domain; These plant-specific type XI myosin are involved in organelle ...
99-802 0e+00

class XI myosin, motor domain; These plant-specific type XI myosin are involved in organelle transport. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle.


Pssm-ID: 276835  Cd Length: 647  Bit Score: 601.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCT 177
Cdd:cd01384    1 PGVLHNLKVRYELDEIYTYTGNILIAVNPFKRLPhLYDAHMMEQYKGAPLGELSPHVFAVADAAYRAMINEGKSQSILVS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  178 GESGAGKTENTKKVIQYLAHVAsshkGRKDHNIPPespkpvkhqgeLERQLLQANPILESFGNAKTVKNDNSSRFGKFIR 257
Cdd:cd01384   81 GESGAGKTETTKMLMQYLAYMG----GRAVTEGRS-----------VEQQVLESNPLLEAFGNAKTVRNNNSSRFGKFVE 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  258 INFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFL--SNGYiPIPGQQDKDN 335
Cdd:cd01384  146 IQFDDAGRISGAAIRTYLLERSRVVQVSDPERNYHCFYQLCAGAPPEDREKYKLKDPKQFHYLnqSKCF-ELDGVDDAEE 224
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  336 FQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKL---CHLLGMNVMEFTRAiLTPRIK 412
Cdd:cd01384  225 YRATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFSKGEEDDSSVPKDEKSEFHLkaaAELLMCDEKALEDA-LCKRVI 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  413 VGRD-YVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQgASFIGILDIAGFEIFELNSFEQLCINYTNE 491
Cdd:cd01384  304 VTPDgIITKPLDPDAATLSRDALAKTIYSRLFDWLVDKINRSIGQDPNS-KRLIGVLDIYGFESFKTNSFEQFCINLANE 382
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  492 KLQQLFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHS 571
Cdd:cd01384  383 KLQQHFNQHVFKMEQEEYTKEEIDWSYIEF-VDNQDVLDLIEK--KPGGIIALLDEACMFPRSTHETFAQKLYQTLKDHK 459
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  572 KFQKPRqlKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWkdeiqniqracfydnitglhdP 651
Cdd:cd01384  460 RFSKPK--LSRTDFTIDHYAGDVTYQTDLFLDKNKDYVVAEHQALLNASKCPFVAGLF---------------------P 516
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  652 PVDRivgldqvtgiteTAFGSAYKtkkgmFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLR 731
Cdd:cd01384  517 PLPR------------EGTSSSSK-----FSSIGSRFKQQLQELMETLNTTEPHYIRCIKPNNLLKPGIFENANVLQQLR 579
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45382679  732 CNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAiPKGFMDGKQACERMIRALELDPnlYRIGQSKIFFR 802
Cdd:cd01384  580 CGGVLEAVRISCAGYPTRKPFEEFLDRFGLLAPEV-LKGSDDEKAACKKILEKAGLKG--YQIGKTKVFLR 647
MYSc_Myo6 cd01382
class VI myosin, motor domain; Myosin VI is a monomeric myosin, which moves towards the ...
99-802 0e+00

class VI myosin, motor domain; Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins which moves towards the plus-end of actin filaments. It is thought that myosin VI, unlike plus-end directed myosins, does not use a pure lever arm mechanism, but instead steps with a mechanism analogous to the kinesin neck-linker uncoupling model. It has been implicated in a myriad of functions including: the transport of cytoplasmic organelles, maintenance of normal Golgi morphology, endocytosis, secretion, cell migration, border cell migration during development, and in cancer metastasis playing roles in deafness and retinal development among others. While how this is accomplished is largely unknown there are several interacting proteins that have been identified such as disabled homolog 2 (DAB2), GIPC1, synapse-associated protein 97 (SAP97; also known as DLG1) and optineurin, which have been found to target myosin VI to different cellular compartments. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276833  Cd Length: 649  Bit Score: 572.27  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCT 177
Cdd:cd01382    1 ATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPkLYSSETIKSYQGKSLGTLPPHVFAIADKAYRDMKVLKQSQSIIVS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  178 GESGAGKTENTKKVIQYLAHVASSHkgrkdhnippespkpvkhQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIR 257
Cdd:cd01382   81 GESGAGKTESTKYILRYLTESWGSG------------------AGPIEQRILEANPLLEAFGNAKTVRNNNSSRFGKFVE 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  258 INFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNyrflsngyipipgqqDKDNFQ 337
Cdd:cd01382  143 IHFNEKSSVVGGFVSHYLLEKSRICVQSKEERNYHIFYRLCAGAPEDLREKLLKDPLLD---------------DVGDFI 207
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  338 ETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNT-------DQASMPENTVAQKlchLLGMNVMEF-----TRA 405
Cdd:cd01382  208 RMDKAMKKIGLSDEEKLDIFRVVAAVLHLGNIEFEENGSDsgggcnvKPKSEQSLEYAAE---LLGLDQDELrvsltTRV 284
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  406 ILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKrqGASFIGILDIAGFEIFELNSFEQLC 485
Cdd:cd01382  285 MQTTRGGAKGTVIKVPLKVEEANNARDALAKAIYSKLFDHIVNRINQCIPFET--SSYFIGVLDIAGFEYFEVNSFEQFC 362
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  486 INYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppGVLALLDEECWFPKATDKTFVEKLVQ 565
Cdd:cd01382  363 INYCNEKLQQFFNERILKEEQELYEKEGLGVKEVEY-VDNQDCIDLIEAKLV--GILDLLDEESKLPKPSDQHFTSAVHQ 439
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  566 EQGTHSKFQKPRQ--------LKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIQNiq 637
Cdd:cd01382  440 KHKNHFRLSIPRKsklkihrnLRDDEGFLIRHFAGAVCYETAQFIEKNNDALHASLESLICESKDKFIRSLFESSTNN-- 517
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  638 racfydnitglhdppvdrivgldqvtgitetAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKR 717
Cdd:cd01382  518 -------------------------------NKDSKQKAGKLSFISVGNKFKTQLNLLMDKLRSTGTSFIRCIKPNLKMT 566
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  718 AGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKgfMDGKQACERMIRALELDPNLYRIGQS 797
Cdd:cd01382  567 SHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRTSFHDLYNMYKKYLPPKLAR--LDPRLFCKALFKALGLNENDFKFGLT 644

                 ....*
gi 45382679  798 KIFFR 802
Cdd:cd01382  645 KVFFR 649
MYSc_Myo4 cd14872
class IV myosin, motor domain; These myosins all possess a WW domain either N-terminal or ...
99-802 0e+00

class IV myosin, motor domain; These myosins all possess a WW domain either N-terminal or C-terminal to their motor domain and a tail with a MyTH4 domain followed by a SH3 domain in some instances. The monomeric Acanthamoebas were the first identified members of this group and have been joined by Stramenopiles. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276839  Cd Length: 644  Bit Score: 568.64  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14872    1 AMIVHNLRKRFKNDQIYTNVGTILISVNPFKRLPLYTPTVMDQYMHKGPKEMPPHTYNIADDAYRAMIVDAMNQSILISG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKGrkdhnippespkpvkhqgeLERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14872   81 ESGAGKTEATKQCLSFFAEVAGSTNG-------------------VEQRVLLANPILEAFGNAKTLRNNNSSRFGKWVEI 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAgeHLKSDLLLEGFNNYRFLS-NGYIPIPGQQDKDNFQ 337
Cdd:cd14872  142 HFDNRGRICGASTENYLLEKSRVVYQIKGERNFHIFYQLLASP--DPASRGGWGSSAAYGYLSlSGCIEVEGVDDVADFE 219
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  338 ETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQAS---MPENTVAQKLCHLLGMNVMEFTRAILTPRIKV- 413
Cdd:cd14872  220 EVVLAMEQLGFDDADINNVMSLIAAILKLGNIEFASGGGKSLVSgstVANRDVLKEVATLLGVDAATLEEALTSRLMEIk 299
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  414 GRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKL 493
Cdd:cd14872  300 GCDPTRIPLTPAQATDACDALAKAAYSRLFDWLVKKINESMRPQKGAKTTFIGVLDIFGFEIFEKNSFEQLCINFTNEKL 379
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  494 QQLFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKF 573
Cdd:cd14872  380 QQHFNQYTFKLEEALYQSEGVKFEHIDF-IDNQPVLDLIEK--KQPGLMLALDDQVKIPKGSDATFMIAANQTHAAKSTF 456
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  574 QKPRQLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWkdeiqniqracfydnitglhdPPV 653
Cdd:cd14872  457 VYAEVRTSRTEFIVKHYAGDVTYDITGFLEKNKDTLQKDLYVLLSSSKNKLIAVLF---------------------PPS 515
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  654 DrivgLDQVTgitetafgsayktkkgMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCN 733
Cdd:cd14872  516 E----GDQKT----------------SKVTLGGQFRKQLSALMTALNATEPHYIRCVKPNQEKRARLFDGFMSLEQLRYA 575
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  734 GVLEGIRICRQGFPNRIVFQEFRQRYEILtPNAIPKGFM-DGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14872  576 GVFEAVKIRKTGYPFRYSHERFLKRYRFL-VKTIAKRVGpDDRQRCDLLLKSLKQDFSKVQVGKTRVLYR 644
MYSc_Myo29 cd14890
class XXIX myosin, motor domain; Class XXIX myosins are comprised of Stramenopiles and have ...
99-802 2.98e-176

class XXIX myosin, motor domain; Class XXIX myosins are comprised of Stramenopiles and have very long tail domains consisting of three IQ motifs, short coiled-coil regions, up to 18 CBS domains, a PB1 domain, and a carboxy-terminal transmembrane domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276855 [Multi-domain]  Cd Length: 662  Bit Score: 551.69  E-value: 2.98e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQ----DREDQS 173
Cdd:cd14890    1 ASLLHTLRLRYERDEIYTYVGPILISINPYKSIPdLYSEERMLLYHGTTAGELPPHVFAIADHAYTQLIQsgvlDPSNQS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  174 ILCTGESGAGKTENTKKVIQYLAHVASSHKGRKDHNIPPESPKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFG 253
Cdd:cd14890   81 IIISGESGAGKTEATKIIMQYLARITSGFAQGASGEGEAASEAIEQTLGSLEDRVLSSNPLLESFGNAKTLRNDNSSRFG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  254 KFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDK 333
Cdd:cd14890  161 KFIEIQFDHHGKIVGAEISNFLLEKTRIVTQNDGERNYHIFYQLLAGADEALRERLKLQTPVEYFYLRGECSSIPSCDDA 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  334 DNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTD--QASMPENTVAqKLCHLLGMNVMEFTRAILTPRI 411
Cdd:cd14890  241 KAFAETIRCLSTIGISEENQDAVFGLLAAVLHLGNVDFESENDTTvlEDATTLQSLK-LAAELLGVNEDALEKALLTRQL 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  412 KVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQgASFIGILDIAGFEIFELNSFEQLCINYTNE 491
Cdd:cd14890  320 FVGGKTIVQPQNVEQARDKRDALAKALYSSLFLWLVSELNRTISSPDDK-WGFIGVLDIYGFEKFEWNTFEQLCINYANE 398
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  492 KLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIE-RPANPPGVLALLDeECWFPKAT--DKTFVEKLVQEQG 568
Cdd:cd14890  399 KLQRHFNQHMFEVEQVEYSNEGIDWQYITFN-DNQACLELIEgKVNGKPGIFITLD-DCWRFKGEeaNKKFVSQLHASFG 476
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  569 T-------------HSKFQKPRQLKDKAdFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSdkfvaelwkdeiqn 635
Cdd:cd14890  477 RksgsggtrrgssqHPHFVHPKFDADKQ-FGIKHYAGDVIYDASGFNEKNNETLNAEMKELIKQSR-------------- 541
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  636 iqracfydnitglhdppvdrivgldqvTGITETafgsayktkkgmfrTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHE 715
Cdd:cd14890  542 ---------------------------RSIREV--------------SVGAQFRTQLQELMAKISLTNPRYVRCIKPNET 580
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  716 KRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAipkgfMDGKQACERMIRALELDPNLYRIG 795
Cdd:cd14890  581 KAPGKFDGLDCLRQLKYSGMMEAIQIRQQGFALREEHDSFFYDFQVLLPTA-----ENIEQLVAVLSKMLGLGKADWQIG 655

                 ....*..
gi 45382679  796 QSKIFFR 802
Cdd:cd14890  656 SSKIFLK 662
MYSc_Myo15 cd01387
class XV mammal-like myosin, motor domain; The class XV myosins are monomeric. In vertebrates, ...
99-802 3.60e-171

class XV mammal-like myosin, motor domain; The class XV myosins are monomeric. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to the head domain are 2 MyTH4 domain, a FERM domain, and a SH3 domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276838 [Multi-domain]  Cd Length: 657  Bit Score: 537.80  E-value: 3.60e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd01387    1 TTVLWNLKTRYERNLIYTYIGSILVSVNPYKMFDIYGLEQVQQYSGRALGELPPHLFAIANLAFAKMLDAKQNQCVVISG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVAsshkgrkdhnipPESPKPVKhqgeleRQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd01387   81 ESGSGKTEATKLIMQYLAAVN------------QRRNNLVT------EQILEATPLLEAFGNAKTVRNDNSSRFGKYLEV 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDvTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNG-YIPIPGQQDKDNFQ 337
Cdd:cd01387  143 FFE-GGVIVGAITSQYLLEKSRIVTQAKNERNYHVFYELLAGLPAQLRQKYGLQEAEKYFYLNQGgNCEIAGKSDADDFR 221
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  338 ETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQ---ASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVG 414
Cdd:cd01387  222 RLLAAMQVLGFSSEEQDSIFRILASVLHLGNVYFHKRQLRHGqegVSVGSDAEIQWVAHLLQISPEGLQKALTFKVTETR 301
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  415 RDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINkALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQ 494
Cdd:cd01387  302 RERIFTPLTIDQALDARDAIAKALYALLFSWLVTRVN-AIVYSGTQDTLSIAILDIFGFEDLSENSFEQLCINYANENLQ 380
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  495 QLFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQ 574
Cdd:cd01387  381 YYFNKHVFKLEQEEYIREQIDWTEIAF-ADNQPVINLISK--KPVGILHILDDECNFPQATDHSFLEKCHYHHALNELYS 457
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  575 KPRQlkDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIQNIQRAcfydnitglhdppvd 654
Cdd:cd01387  458 KPRM--PLPEFTIKHYAGQVWYQVHGFLDKNRDQLRQDVLELLVSSRTRVVAHLFSSHRAQTDKA--------------- 520
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  655 rivgldqvtgiTETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNG 734
Cdd:cd01387  521 -----------PPRLGKGRFVTMKPRTPTVAARFQDSLLQLLEKMERCNPWFVRCLKPNHKKEPMLFDMDVVMAQLRYSG 589
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679  735 VLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGfMDGKQACERMIRALELDP-NLYRIGQSKIFFR 802
Cdd:cd01387  590 MLETIRIRKEGYPVRLPFQVFIDRYRCLVALKLPRP-APGDMCVSLLSRLCTVTPkDMYRLGATKVFLR 657
MYSc_Myo9 cd01385
class IX myosin, motor domain; Myosin IX is a processive single-headed motor, which might play ...
99-802 8.76e-170

class IX myosin, motor domain; Myosin IX is a processive single-headed motor, which might play a role in signalling. It has a N-terminal RA domain, an IQ domain, a C1_1 domain, and a RhoGAP domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276836 [Multi-domain]  Cd Length: 690  Bit Score: 535.03  E-value: 8.76e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd01385    1 QTLLENLRARFKHGKIYTYVGSILIAVNPFKFLPIYNPKYVKMYQNRRLGKLPPHIFAIADVAYHAMLRKKKNQCIVISG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLahVASSHKGrkdhnippespkpvkHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd01385   81 ESGSGKTESTNFLLHHL--TALSQKG---------------YGSGVEQTILGAGPVLEAFGNAKTAHNNNSSRFGKFIQV 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLS-NGYIPIPGQQDKDNFQ 337
Cdd:cd01385  144 NYRENGMVRGAVVEKYLLEKSRIVSQEKNERNYHVFYYLLAGASEEERKELHLKQPEDYHYLNqSDCYTLEGEDEKYEFE 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  338 ETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKER-NTDQASMPENT-VAQKLCHLLGMNVMEFTRAILTPRIKVGR 415
Cdd:cd01385  224 RLKQAMEMVGFLPETQRQIFSVLSAVLHLGNIEYKKKAyHRDESVTVGNPeVLDIISELLRVKEETLLEALTTKKTVTVG 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  416 DYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKAL----DRTKRQGASfIGILDIAGFEIFELNSFEQLCINYTNE 491
Cdd:cd01385  304 ETLILPYKLPEAIATRDAMAKCLYSALFDWIVLRINHALlnkkDLEEAKGLS-IGVLDIFGFEDFGNNSFEQFCINYANE 382
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  492 KLQQLFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIERpaNPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHS 571
Cdd:cd01385  383 HLQYYFNQHIFKLEQEEYKKEGISWHNIEY-TDNTGCLQLISK--KPTGLLCLLDEESNFPGATNQTLLAKFKQQHKDNK 459
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  572 KFQKPrQLKDKAdFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAEL----------WkdeiqNIQRAcF 641
Cdd:cd01385  460 YYEKP-QVMEPA-FIIAHYAGKVKYQIKDFREKNLDLMRPDIVAVLRSSSSAFVRELigidpvavfrW-----AVLRA-F 531
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  642 YDNITGLHDPPVDRIVGLDQVTGI----TETAFGSAYKTKKGMfrTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKR 717
Cdd:cd01385  532 FRAMAAFREAGRRRAQRTAGHSLTlhdrTTKSLLHLHKKKKPP--SVSAQFQTSLSKLMETLGQAEPFFIRCIKSNAEKK 609
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  718 AGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILtpnaIPKGFMDGKQACERMIRALELDPNLYRIGQS 797
Cdd:cd01385  610 PLRFDDELVLRQLRYTGMLETVRIRRSGYSVRYTFQEFITQFQVL----LPKGLISSKEDIKDFLEKLNLDRDNYQIGKT 685

                 ....*
gi 45382679  798 KIFFR 802
Cdd:cd01385  686 KVFLK 690
MYSc_Myo42 cd14903
class XLII myosin, motor domain; The class XLII myosins are comprised of Stramenopiles. Not ...
99-802 1.76e-166

class XLII myosin, motor domain; The class XLII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276868 [Multi-domain]  Cd Length: 658  Bit Score: 525.11  E-value: 1.76e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCT 177
Cdd:cd14903    1 AAILYNVKKRFLRKLPYTYTGDICIAVNPYQWLPeLYTEEQHSKYLNKPKEELPPHVYATSVAAYNHMKRSGRNQSILVS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  178 GESGAGKTENTKKVIQYLAHVASshkGRKDHNIppespkpvkhqgeleRQLLQANPILESFGNAKTVKNDNSSRFGKFIR 257
Cdd:cd14903   81 GESGAGKTETTKILMNHLATIAG---GLNDSTI---------------KKIIEVNPLLESFGNAKTVRNDNSSRFGKFTQ 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  258 INFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAgeHLKSDLLLEGFNNYRFL-SNGYIPIPGQQDKDNF 336
Cdd:cd14903  143 LQFDKNGTLVGAKCRTYLLEKTRVISHERPERNYHIFYQLLASP--DVEERLFLDSANECAYTgANKTIKIEGMSDRKHF 220
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  337 QETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASM--PENTVAQKLCHLLGMNVMEFTRAILTPRIKVG 414
Cdd:cd14903  221 ARTKEALSLIGVSEEKQEVLFEVLAGILHLGQLQIQSKPNDDEKSAiaPGDQGAVYATKLLGLSPEALEKALCSRTMRAA 300
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  415 RDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQgASFIGILDIAGFEIFELNSFEQLCINYTNEKLQ 494
Cdd:cd14903  301 GDVYTVPLKKDQAEDCRDALAKAIYSNVFDWLVATINASLGNDAKM-ANHIGVLDIFGFEHFKHNSFEQFCINYANEKLQ 379
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  495 QLFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIErpaNPPGVLALLDEECWFPKATDKTFVEKLVqeqGTHSKFQ 574
Cdd:cd14903  380 QKFTQDVFKTVQIEYEEEGIRWAHIDF-ADNQDVLAVIE---DRLGIISLLNDEVMRPKGNEESFVSKLS---SIHKDEQ 452
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  575 K----PRQlkDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiqniqracfydnitglhd 650
Cdd:cd14903  453 DviefPRT--SRTQFTIKHYAGPVTYESLGFLEKHKDALLPDLSDLMRGSSKPFLRMLFKE------------------- 511
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  651 ppvdrIVGLDQVTGITETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQL 730
Cdd:cd14903  512 -----KVESPAAASTSLARGARRRRGGALTTTTVGTQFKDSLNELMTTIRSTNVHYVRCIKPNSIKSPTELDHLMVVSQL 586
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679  731 RCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAiPKGFMDGKQACERMIRALELD-PNLYRIGQSKIFFR 802
Cdd:cd14903  587 RCAGVIEAIRISRAAYPNRLLHEEFLDKFWLFLPEG-RNTDVPVAERCEALMKKLKLEsPEQYQMGLTRIYFQ 658
MYSc_Myo40 cd14901
class XL myosin, motor domain; The class XL myosins are comprised of Stramenopiles. Not much ...
99-800 5.53e-164

class XL myosin, motor domain; The class XL myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276866 [Multi-domain]  Cd Length: 655  Bit Score: 518.19  E-value: 5.53e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMY------RGKKRHEMPPHIYAISESAYRCMLQDRE-- 170
Cdd:cd14901    1 PSILHVLRRRFAHGLIYTSTGAILVAINPFRRLPLYDDETKEAYyehgerRAAGERKLPPHVYAVADKAFRAMLFASRgq 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  171 --DQSILCTGESGAGKTENTKKVIQYLAHVaSSHKGRKDHNIPPESpkpvkhqgeLERQLLQANPILESFGNAKTVKNDN 248
Cdd:cd14901   81 kcDQSILVSGESGAGKTETTKIIMNYLASV-SSATTHGQNATEREN---------VRDRVLESNPILEAFGNARTNRNNN 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  249 SSRFGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFL--SNGYIP 326
Cdd:cd14901  151 SSRFGKFIRLGFASSGSLLGASISTYLLERVRLVSQAKGERNYHIFYELLRGASSDELHALGLTHVEEYKYLnsSQCYDR 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  327 IPGQQDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISF-KKERNTDQASMPENTVAQKLCHLLGMNVMEFTRA 405
Cdd:cd14901  231 RDGVDDSVQYAKTRHAMTTIGMSPDEQISVLQLVAAVLHLGNLCFvKKDGEGGTFSMSSLANVRAACDLLGLDMDVLEKT 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  406 ILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGAS-FIGILDIAGFEIFELNSFEQL 484
Cdd:cd14901  311 LCTREIRAGGEYITMPLSVEQALLTRDVVAKTLYAQLFDWLVDRINESIAYSESTGASrFIGIVDIFGFEIFATNSLEQL 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  485 CINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFgldlqP----CIDLIErpANPPGVLALLDEECWFPKATDKTFV 560
Cdd:cd14901  391 CINFANEKLQQLFGKFVFEMEQDEYVAEAIPWTFVEY-----PnndaCVAMFE--ARPTGLFSLLDEQCLLPRGNDEKLA 463
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  561 EKLVQEQGTHSKFQKPRQLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAElwkdeiqniqrac 640
Cdd:cd14901  464 NKYYDLLAKHASFSVSKLQQGKRQFVIHHYAGAVCYATDGFCDKNKDHVHSEALALLRTSSNAFLSS------------- 530
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  641 fydnitglhdppvdrivgldqvtgitetafgsayktkkgmfrTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGK 720
Cdd:cd14901  531 ------------------------------------------TVVAKFKVQLSSLLEVLNATEPHFIRCIKPNDVLSPSE 568
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  721 LDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRA------LELDPNLYrI 794
Cdd:cd14901  569 FDAKRVLEQLRCSGVLEAVKISRSGYPVRFPHDAFVHTYSCLAPDGASDTWKVNELAERLMSQLqhselnIEHLPPFQ-V 647

                 ....*.
gi 45382679  795 GQSKIF 800
Cdd:cd14901  648 GKTKVF 653
MYSc_Myo27 cd14888
class XXVII myosin, motor domain; Not much is known about this myosin class. The catalytic ...
99-764 2.05e-162

class XXVII myosin, motor domain; Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276853 [Multi-domain]  Cd Length: 667  Bit Score: 514.24  E-value: 2.05e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMYRgKKRHEMPPHIYAISESAYRCMLQDREDQSILCT 177
Cdd:cd14888    1 ASILHSLNLRFDIDEIYTFTGPILIAVNPFKTIPgLYSDEMLLKFI-QPSISKSPHVFSTASSAYQGMCNNKKSQTILIS 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  178 GESGAGKTENTKKVIQYLAHVASSHKGRKDhnippespkpvkhqgELERQLLQANPILESFGNAKTVKNDNSSRFGKFIR 257
Cdd:cd14888   80 GESGAGKTESTKYVMKFLACAGSEDIKKRS---------------LVEAQVLESNPLLEAFGNARTLRNDNSSRFGKFIE 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  258 INFDVT---------GYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIP-- 326
Cdd:cd14888  145 LQFSKLkskrmsgdrGRLCGAKIQTYLLEKVRVCDQQEGERNYHIFYQLCAAAREAKNTGLSYEENDEKLAKGADAKPis 224
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  327 ----------------------IPGQQDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPE 384
Cdd:cd14888  225 idmssfephlkfryltksscheLPDVDDLEEFESTLYAMQTVGISPEEQNQIFSIVAAILYLGNILFENNEACSEGAVVS 304
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  385 NTVAQKL---CHLLGMNVMEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQG 461
Cdd:cd14888  305 ASCTDDLekvASLLGVDAEDLLNALCYRTIKTAHEFYTKPLRVDEAEDVRDALARALYSCLFDKVVERTNESIGYSKDNS 384
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  462 ASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGV 541
Cdd:cd14888  385 LLFCGVLDIFGFECFQLNSFEQLCINFTNERLQQFFNNFVFKCEEKLYIEEGISWNPLDFP-DNQDCVDLLQ--EKPLGI 461
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  542 LALLDEECWFPKATDKTFVEKLVQEQGTHSKFQKPRqlKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSS 621
Cdd:cd14888  462 FCMLDEECFVPGGKDQGLCNKLCQKHKGHKRFDVVK--TDPNSFVIVHFAGPVKYCSDGFLEKNKDQLSVDAQEVIKNSK 539
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  622 DKFVAELWKdeiqniqracfydnitglhdPPVDRIVGLdqvtgitetafgsayKTKKGMFRTVGQLYKESLTKLMATLRN 701
Cdd:cd14888  540 NPFISNLFS--------------------AYLRRGTDG---------------NTKKKKFVTVSSEFRNQLDVLMETIDK 584
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679  702 TNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTP 764
Cdd:cd14888  585 TEPHFIRCIKPNSQNVPDLFDRISVNEQLKYGGVLQAVQVSRAGYPVRLSHAEFYNDYRILLN 647
MYSc_Myo10 cd14873
class X myosin, motor domain; Myosin X is an unconventional myosin motor that functions as a ...
99-802 4.65e-161

class X myosin, motor domain; Myosin X is an unconventional myosin motor that functions as a monomer. In mammalian cells, the motor is found to localize to filopodia. Myosin X walks towards the barbed ends of filaments and is thought to walk on bundles of actin, rather than single filaments, a unique behavior. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to the head domain are a variable number of IQ domains, 2 PH domains, a MyTH4 domain, and a FERM domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276840 [Multi-domain]  Cd Length: 651  Bit Score: 509.72  E-value: 4.65e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCT 177
Cdd:cd14873    1 GSIMYNLFQRYKRNQIYTYIGSILASVNPYQPIAgLYEPATMEQYSRRHLGELPPHIFAIANECYRCLWKRHDNQCILIS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  178 GESGAGKTENTKKVIQYLAHVASSHKGRKDhnippespkpVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIR 257
Cdd:cd14873   81 GESGAGKTESTKLILKFLSVISQQSLELSL----------KEKTSCVEQAILESSPIMEAFGNAKTVYNNNSSRFGKFVQ 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  258 INFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLS-NGYIPIPGQQDKDNF 336
Cdd:cd14873  151 LNICQKGNIQGGRIVDYLLEKNRVVRQNPGERNYHIFYALLAGLEHEEREEFYLSTPENYHYLNqSGCVEDKTISDQESF 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  337 QETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKkerNTDQASMPENTVAQKLCHLLGMNVMEFTRAiLTPRIKVGR- 415
Cdd:cd14873  231 REVITAMEVMQFSKEEVREVSRLLAGILHLGNIEFI---TAGGAQVSFKTALGRSAELLGLDPTQLTDA-LTQRSMFLRg 306
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  416 DYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKaldRTKRQGA-SFIGILDIAGFEIFELNSFEQLCINYTNEKLQ 494
Cdd:cd14873  307 EEILTPLNVQQAVDSRDSLAMALYARCFEWVIKKINS---RIKGKEDfKSIGILDIFGFENFEVNHFEQFNINYANEKLQ 383
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  495 QLFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQ 574
Cdd:cd14873  384 EYFNKHIFSLEQLEYSREGLVWEDIDW-IDNGECLDLIEKKL---GLLALINEESHFPQATDSTLLEKLHSQHANNHFYV 459
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  575 KPRQLKDkaDFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKdeiqniqracfydnitglHDPPVD 654
Cdd:cd14873  460 KPRVAVN--NFGVKHYAGEVQYDVRGILEKNRDTFRDDLLNLLRESRFDFIYDLFE------------------HVSSRN 519
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  655 RivgldqvtgitETAFGSAYKTKKGmfrTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNG 734
Cdd:cd14873  520 N-----------QDTLKCGSKHRRP---TVSSQFKDSLHSLMATLSSSNPFFVRCIKPNMQKMPDQFDQAVVLNQLRYSG 585
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 45382679  735 VLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKqaCERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14873  586 MLETVRIRKAGYAVRRPFQDFYKRYKVLMRNLALPEDVRGK--CTSLLQLYDASNSEWQLGKTKVFLR 651
MYSc_Myo3 cd01379
class III myosin, motor domain; Myosin III has been shown to play a role in the vision process ...
100-802 2.17e-160

class III myosin, motor domain; Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. They are characterized by an N-terminal protein kinase domain and several IQ domains. Some members also contain WW, SH2, PH, and Y-phosphatase domains. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276830 [Multi-domain]  Cd Length: 633  Bit Score: 507.20  E-value: 2.17e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGE 179
Cdd:cd01379    2 TIVSQLQKRYSRDQIYTYIGDILIAVNPFQNLGIYTEEHSRLYRGAKRSDNPPHIFAVADAAYQAMIHQKKNQCIVISGE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  180 SGAGKTENTKKVIQYLAHVAsshkgrKDHNippespkpvkhqGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRIN 259
Cdd:cd01379   82 SGAGKTESANLLVQQLTVLG------KANN------------RTLEEKILQVNPLMEAFGNARTVINDNSSRFGKYLEMK 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  260 FDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGagehLKSDLLLEGFN-------NYRFLSNGYIPIPGQQD 332
Cdd:cd01379  144 FTSTGAVTGARISEYLLEKSRVVHQAIGERNFHIFYYIYAG----LAEDKKLAKYKlpenkppRYLQNDGLTVQDIVNNS 219
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  333 --KDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFK---KERNTDQASMPENTVA-QKLCHLLGMNVMEFTRAi 406
Cdd:cd01379  220 gnREKFEEIEQCFKVIGFTKEEVDSVYSILAAILHIGDIEFTeveSNHQTDKSSRISNPEAlNNVAKLLGIEADELQEA- 298
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  407 LTPRIKVGR-DYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKAL--DRTKRQGASFIGILDIAGFEIFELNSFEQ 483
Cdd:cd01379  299 LTSHSVVTRgETIIRNNTVEEATDARDAMAKALYGRLFSWIVNRINSLLkpDRSASDEPLSIGILDIFGFENFQKNSFEQ 378
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  484 LCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCID-LIERPAnppGVLALLDEECWFPKATDKTFVEK 562
Cdd:cd01379  379 LCINIANEQIQYYFNQHIFAWEQQEYLNEGIDVDLIEYE-DNRPLLDmFLQKPM---GLLALLDEESRFPKATDQTLVEK 454
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  563 LvqEQGTHSKFQKpRQLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAElwkdeiqniqracfy 642
Cdd:cd01379  455 F--HNNIKSKYYW-RPKSNALSFGIHHYAGKVLYDASGFLEKNRDTLPPDVVQLLRSSENPLVRQ--------------- 516
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  643 dnitglhdppvdrivgldqvtgitetafgsayktkkgmfrTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLD 722
Cdd:cd01379  517 ----------------------------------------TVATYFRYSLMDLLSKMVVGQPHFVRCIKPNDSRQAGKFD 556
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  723 PHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDgKQACERMIRALELDPnlYRIGQSKIFFR 802
Cdd:cd01379  557 REKVLKQLRYTGVLETTRIRRQGFSHRILFADFLKRYYFLAFKWNEEVVAN-RENCRLILERLKLDN--WALGKTKVFLK 633
MYSc_Myo36 cd14897
class XXXVI myosin, motor domain; This class of molluscan myosins contains a motor domain ...
99-802 3.84e-156

class XXXVI myosin, motor domain; This class of molluscan myosins contains a motor domain followed by a GlcAT-I (Beta1,3-glucuronyltransferase I) domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276862 [Multi-domain]  Cd Length: 635  Bit Score: 495.75  E-value: 3.84e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKK-RHEMPPHIYAISESAYRCMLQDREDQSILCT 177
Cdd:cd14897    1 NTIVQTLKSRYNKDKFYTYIGDILVAVNPCKPLPIFDKKHHEEYSNLSvRSQRPPHLFWIADQAYRRLLETGRNQCILVS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  178 GESGAGKTENTKKVIQYLAHVASSHkgrkdhnippespkpvkhQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIR 257
Cdd:cd14897   81 GESGAGKTESTKYMIKHLMKLSPSD------------------DSDLLDKIVQINPLLEAFGNASTVMNDNSSRFGKFIE 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  258 INFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQD----- 332
Cdd:cd14897  143 LHFTENGQLLGAKIDDYLLEKSRVVHRGNGEKNFHIFYALFAGMSRDRLLYYFLEDPDCHRILRDDNRNRPVFNDseele 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  333 --KDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPR 410
Cdd:cd14897  223 yyRQMFHDLTNIMKLIGFSEEDISVIFTILAAILHLTNIVFIPDEDTDGVTVADEYPLHAVAKLLGIDEVELTEALISNV 302
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  411 IKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKAL----DRTKRQGASFIGILDIAGFEIFELNSFEQLCI 486
Cdd:cd14897  303 NTIRGERIQSWKSLRQANDSRDALAKDLYSRLFGWIVGQINRNLwpdkDFQIMTRGPSIGILDMSGFENFKINSFDQLCI 382
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  487 NYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIERpaNPPGVLALLDEECWFPKATDKTFVEKLVQE 566
Cdd:cd14897  383 NLSNERLQQYFNDYVFPRERSEYEIEGIEWRDIEYH-DNDDVLELFFK--KPLGILPLLDEESTFPQSTDSSLVQKLNKY 459
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  567 QGTHSKFQKPrqLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKdeiqniqracfydnit 646
Cdd:cd14897  460 CGESPRYVAS--PGNRVAFGIRHYAEQVTYDADGFLEKNRDNLSSDIVGCLLNSNNEFISDLFT---------------- 521
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  647 glhdppvdrivgldqvtgitetafgsayktkkgmfrtvgQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLV 726
Cdd:cd14897  522 ---------------------------------------SYFKRSLSDLMTKLNSADPLFVRCIKPNNFLRPNKFDDELV 562
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679  727 LDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAiPKGFMDGKQACERMIRALELDPnlYRIGQSKIFFR 802
Cdd:cd14897  563 RRQLLCNGLMEIAKIRRDGYPIRIKYEDFVKRYKEICDFS-NKVRSDDLGKCQKILKTAGIKG--YQFGKTKVFLK 635
MYSc_Myo31 cd14892
class XXXI myosin, motor domain; Class XXXI myosins have a very long neck region consisting of ...
99-802 4.59e-155

class XXXI myosin, motor domain; Class XXXI myosins have a very long neck region consisting of 17 IQ motifs and 2 tandem ANK repeats that are separated by a PH domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276857 [Multi-domain]  Cd Length: 656  Bit Score: 493.51  E-value: 4.59e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEM---PPHIYAISESAYRCMLQDR----ED 171
Cdd:cd14892    1 APLLDVLRRRYERDAIYTFTADILISINPYKSIPLLYDVPGFDSQRKEEATAsspPPHVFSIAERAYRAMKGVGkgqgTP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  172 QSILCTGESGAGKTENTKKVIQYLAHVASSHKGrkdhniPPESPKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSR 251
Cdd:cd14892   81 QSIVVSGESGAGKTEASKYIMKYLATASKLAKG------ASTSKGAANAHESIEECVLLSNLILEAFGNAKTIRNDNSSR 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  252 FGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNG-YIPIPGQ 330
Cdd:cd14892  155 FGKYIQIHYNSDGRIAGASTDHFLLEKSRLVGPDANERNYHIFYQLLAGLDANENAALELTPAESFLFLNQGnCVEVDGV 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  331 QDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFkkERNTDQ----ASMPENTVAQKLCHLLGMNVMEFTRAI 406
Cdd:cd14892  235 DDATEFKQLRDAMEQLGFDAEFQRPIFEVLAAVLHLGNVRF--EENADDedvfAQSADGVNVAKAAGLLGVDAAELMFKL 312
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  407 LTPRIKVGRDYV-QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQ---------GASFIGILDIAGFEIF 476
Cdd:cd14892  313 VTQTTSTARGSVlEIKLTAREAKNALDALCKYLYGELFDWLISRINACHKQQTSGvtggaasptFSPFIGILDIFGFEIM 392
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  477 ELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIERPanPPGVLALLDEECWFP-KAT 555
Cdd:cd14892  393 PTNSFEQLCINFTNEMLQQQFNKHVFVLEQEVYASEGIDVSAIEFQ-DNQDCLDLIQKK--PLGLLPLLEEQMLLKrKTT 469
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  556 DKTFVEKLVQEQ-GTHSKFQKPRQLKDkaDFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDkfvaelwkdeiq 634
Cdd:cd14892  470 DKQLLTIYHQTHlDKHPHYAKPRFECD--EFVLRHYAGDVTYDVHGFLAKNNDNLHDDLRDLLRSSSK------------ 535
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  635 niqracfydnitglhdppvdrivgldqvtgitetafgsayktkkgmFRTvgqlykeSLTKLMATLRNTNPNFVRCIIPNH 714
Cdd:cd14892  536 ----------------------------------------------FRT-------QLAELMEVLWSTTPSYIKCIKPNN 562
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  715 EKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPN-AIPKGFMDGKQACERM-----IRALELD 788
Cdd:cd14892  563 LKFPGGFSCELVRDQLIYSGVLEVVRIRREGFPIRRQFEEFYEKFWPLARNkAGVAASPDACDATTARkkceeIVARALE 642
                        730
                 ....*....|....
gi 45382679  789 PNLYRIGQSKIFFR 802
Cdd:cd14892  643 RENFQLGRTKVFLR 656
MYSc_Myo39 cd14900
class XXXIX myosin, motor domain; The class XXXIX myosins are found in Stramenopiles. Not much ...
100-762 1.96e-145

class XXXIX myosin, motor domain; The class XXXIX myosins are found in Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276865  Cd Length: 627  Bit Score: 465.94  E-value: 1.96e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMY-----------RGKKRHEMPPHIYAISESAYRCM-- 165
Cdd:cd14900    2 TILSALETRFYAQKIYTNTGAILLAVNPFQKLPgLYSSDTMAKYllsfearssstRNKGSDPMPPHIYQVAGEAYKAMml 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  166 --LQDREDQSILCTGESGAGKTENTKKVIQYLAHVAsshkgrkDHNIPPESPKPVKHQGeLERQLLQANPILESFGNAKT 243
Cdd:cd14900   82 glNGVMSDQSILVSGESGSGKTESTKFLMEYLAQAG-------DNNLAASVSMGKSTSG-IAAKVLQTNILLESFGNART 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  244 VKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEhlksdlllegfnnyrflsng 323
Cdd:cd14900  154 LRNDNSSRFGKFIKLHFTSGGRLTGASIQTYLLEKVRLVSQSKGERNYHIFYEMAIGASE-------------------- 213
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  324 yipipGQQDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQK-------LCHLLG 396
Cdd:cd14900  214 -----AARKRDMYRRVMDAMDIIGFTPHERAGIFDLLAALLHIGNLTFEHDENSDRLGQLKSDLAPSsiwsrdaAATLLS 288
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  397 MNVMEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKAL---DRTKRQGAS-FIGILDIAG 472
Cdd:cd14900  289 VDATKLEKALSVRRIRAGTDFVSMKLSAAQANNARDALAKALYGRLFDWLVGKMNAFLkmdDSSKSHGGLhFIGILDIFG 368
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  473 FEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLALLDEECWFP 552
Cdd:cd14900  369 FEVFPKNSFEQLCINFANETLQQQFNDYVFKAEQREYESQGVDWKYVEFC-DNQDCVNLIS--QRPTGILSLIDEECVMP 445
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  553 KATDKTFVEKLVQEQGTHSKFQKPRQLKDKADFCIIHYAGKVDYKADEWLMKNMDplndnvatLLHQSSdkfvaelwkde 632
Cdd:cd14900  446 KGSDTTLASKLYRACGSHPRFSASRIQRARGLFTIVHYAGHVEYSTDGFLEKNKD--------VLHQEA----------- 506
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  633 iqniqracfydnitglhdppVDrivgldqvtgitetafgsayktkkgMFRTVGQlYKESLTKLMATLRNTNPNFVRCIIP 712
Cdd:cd14900  507 --------------------VD-------------------------LFVYGLQ-FKEQLTTLLETLQQTNPHYVRCLKP 540
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|
gi 45382679  713 NHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEIL 762
Cdd:cd14900  541 NDLCKAGIYERERVLNQLRCNGVMEAVRVARAGFPIRLLHDEFVARYFSL 590
MYSc_Myo28 cd14889
class XXVIII myosin, motor domain; These myosins are found in fish, chicken, and mollusks. The ...
101-802 7.89e-144

class XXVIII myosin, motor domain; These myosins are found in fish, chicken, and mollusks. The tail regions of these class-XXVIII myosins consist of an IQ motif, a short coiled-coil region, and an SH2 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276854  Cd Length: 659  Bit Score: 462.45  E-value: 7.89e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  101 VLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCML----QDREDQSILC 176
Cdd:cd14889    3 LLEVLKVRFMQSNIYTYVGDILVAINPFKYLHIYEKEVSQKYKCEKKSSLPPHIFAVADRAYQSMLgrlaRGPKNQCIVI 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  177 TGESGAGKTENTKKVIQYLAHVAsshkgrkdhnippespkpvKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFI 256
Cdd:cd14889   83 SGESGAGKTESTKLLLRQIMELC-------------------RGNSQLEQQILQVNPLLEAFGNAQTVMNDNSSRFGKYI 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  257 RINFDvTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAG--AGEHLKSDLLLEGFnnYRFLSNGYipipGQQD-- 332
Cdd:cd14889  144 QLRFR-NGHVKGAKINEYLLEKSRVVHQDGGEENFHIFYYMFAGisAEDRENYGLLDPGK--YRYLNNGA----GCKRev 216
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  333 ---KDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFkkERNTDQASMPENTVAQKL---CHLLGMNVMEFTRAi 406
Cdd:cd14889  217 qywKKKYDEVCNAMDMVGFTEQEEVDMFTILAGILSLGNITF--EMDDDEALKVENDSNGWLkaaAGQFGVSEEDLLKT- 293
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  407 LTPRIKVGR-DYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQG--ASFIGILDIAGFEIFELNSFEQ 483
Cdd:cd14889  294 LTCTVTFTRgEQIQRHHTKQQAEDARDSIAKVAYGRVFGWIVSKINQLLAPKDDSSveLREIGILDIFGFENFAVNRFEQ 373
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  484 LCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIerPANPPGVLALLDEECWFPKATDKTFVEKL 563
Cdd:cd14889  374 ACINLANEQLQYFFNHHIFLMEQKEYKKEGIDWKEITY-KDNKPILDLF--LNKPIGILSLLDEQSHFPQATDESFVDKL 450
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  564 VQEQGTHSKFQKPRQLKDKadFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIQNiqracfyd 643
Cdd:cd14889  451 NIHFKGNSYYGKSRSKSPK--FTVNHYAGKVTYNASGFLEKNRDTIPASIRTLFINSATPLLSVLFTATRSR-------- 520
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  644 niTGLHDPPVDRIvgldqvtGITETAFGSAYKtkkgmfRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDP 723
Cdd:cd14889  521 --TGTLMPRAKLP-------QAGSDNFNSTRK------QSVGAQFKHSLGVLMEKMFAASPHFVRCIKPNHVKVPGQLDS 585
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  724 HLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEIL--TPNaIPKgfmdGKQACERMIRALELDPnlYRIGQSKIFF 801
Cdd:cd14889  586 KYIQDQLRYNGLLETIRIRREGFSWRPSFAEFAERYKILlcEPA-LPG----TKQSCLRILKATKLVG--WKCGKTRLFF 658

                 .
gi 45382679  802 R 802
Cdd:cd14889  659 K 659
MYSc_Myo46 cd14907
class XLVI myosin, motor domain; The class XLVI myosins are comprised of Alveolata. Not much ...
99-765 9.16e-144

class XLVI myosin, motor domain; The class XLVI myosins are comprised of Alveolata. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276872 [Multi-domain]  Cd Length: 669  Bit Score: 462.58  E-value: 9.16e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMYRGKKRH--------EMPPHIYAISESAYRCMLQDR 169
Cdd:cd14907    1 AELLINLKKRYQQDKIFTYVGPTLIVMNPYKQIDnLFSEEVMQMYKEQIIQngeyfdikKEPPHIYAIAALAFKQLFENN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  170 EDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKDHNIPPESPKPVKHQ-GELERQLLQANPILESFGNAKTVKNDN 248
Cdd:cd14907   81 KKQAIVISGESGAGKTENAKYAMKFLTQLSQQEQNSEEVLTLTSSIRATSKStKSIEQKILSCNPILEAFGNAKTVRNDN 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  249 SSRFGKFIRINFD-VTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLE----GFNNYRFLSNG 323
Cdd:cd14907  161 SSRFGKYVSILVDkKKRKILGARIQNYLLEKSRVTQQGQGERNYHIFYHLLYGADQQLLQQLGLKnqlsGDRYDYLKKSN 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  324 YIPIPGQQDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFK-KERNTDQASMPENT-VAQKLCHLLGMNVME 401
Cdd:cd14907  241 CYEVDTINDEKLFKEVQQSFQTLGFTEEEQDSIWRILAAILLLGNLQFDdSTLDDNSPCCVKNKeTLQIIAKLLGIDEEE 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  402 FTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKAL-------DRTKRQGASFIGILDIAGFE 474
Cdd:cd14907  321 LKEALTTKIRKVGNQVITSPLSKKECINNRDSLSKELYDRLFNWLVERLNDTImpkdekdQQLFQNKYLSIGLLDIFGFE 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  475 IFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIE--WNFIDFgLDLQPCIDLIERPanPPGVLALLDEECWFP 552
Cdd:cd14907  401 VFQNNSFEQLCINYTNEKLQQLYISYVFKAEEQEFKEEGLEdyLNQLSY-TDNQDVIDLLDKP--PIGIFNLLDDSCKLA 477
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  553 KATDKTFVEKLVQEQGTHSKFQKPRQLKdKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDE 632
Cdd:cd14907  478 TGTDEKLLNKIKKQHKNNSKLIFPNKIN-KDTFTIRHTAKEVEYNIEGFREKNKDEISQSIINCIQNSKNRIISSIFSGE 556
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  633 IQniqracfydnitglhdppvdrivgldqvtgiTETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIP 712
Cdd:cd14907  557 DG-------------------------------SQQQNQSKQKKSQKKDKFLGSKFRNQMKQLMNELMQCDVHFIRCIKP 605
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|...
gi 45382679  713 NHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPN 765
Cdd:cd14907  606 NEEKKADLFIQGYVLNQIRYLGVLESIRVRKQGYPYRKSYEDFYKQYSLLKKN 658
MYSc_Myo30 cd14891
class XXX myosin, motor domain; Myosins of class XXX are composed of an amino-terminal ...
99-802 7.41e-141

class XXX myosin, motor domain; Myosins of class XXX are composed of an amino-terminal SH3-like domain, two IQ motifs, a coiled-coil region and a PX domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276856  Cd Length: 645  Bit Score: 453.73  E-value: 7.41e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRyySGLI----YTYSGLFCVVINPYKNLPiysENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDRE---D 171
Cdd:cd14891    1 AGILHNLEER--SKLDnqrpYTFMANVLIAVNPLRRLP---EPDKSDYINTPLDPCPPHPYAIAEMAYQQMCLGSGrmqN 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  172 QSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKDHNIPPESPKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSR 251
Cdd:cd14891   76 QSIVISGESGAGKTETSKIILRFLTTRAVGGKKASGQDIEQSSKKRKLSVTSLDERLMDTNPILESFGNAKTLRNHNSSR 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  252 FGKFIRINFDVTGY-IVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLS-NGYIPIPG 329
Cdd:cd14891  156 FGKFMKLQFTKDKFkLAGAFIETYLLEKSRLVAQPPGERNFHIFYQLLAGASAELLKELLLLSPEDFIYLNqSGCVSDDN 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  330 QQDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKErNTDQASMPENTVAQK-----LCHLLGMNVMEFTR 404
Cdd:cd14891  236 IDDAANFDNVVSALDTVGIDEDLQLQIWRILAGLLHLGNIEFDEE-DTSEGEAEIASESDKealatAAELLGVDEEALEK 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  405 AILTPRIkVGRDYVQKAQ-TKEQADFAVEALAKATYERLFRWLVHRINKALDRtKRQGASFIGILDIAGFEIFEL-NSFE 482
Cdd:cd14891  315 VITQREI-VTRGETFTIKrNAREAVYSRDAIAKSIYERLFLWIVQQINTSLGH-DPDPLPYIGVLDIFGFESFETkNDFE 392
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  483 QLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLALLDEECWFPKATDKTFVEK 562
Cdd:cd14891  393 QLLINYANEALQATFNQQVFIAEQELYKSEGIDVGVITWP-DNRECLDLIA--SKPNGILPLLDNEARNPNPSDAKLNET 469
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  563 LVQEQGTHSKFQKPRQlKDKAD-FCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHqSSDKFvaelwkdeiqniqracf 641
Cdd:cd14891  470 LHKTHKRHPCFPRPHP-KDMREmFIVKHYAGTVSYTIGSFIDKNNDIIPEDFEDLLA-SSAKF----------------- 530
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  642 ydnitglhdppvdrivgLDQVTGITEtafgsayktkkgmfrtvgqlykesltklmaTLRNTNPNFVRCIIPNHEKRAGKL 721
Cdd:cd14891  531 -----------------SDQMQELVD------------------------------TLEATRCNFIRCIKPNAAMKVGVF 563
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  722 DPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQA-CERMIRALELDPNLYRIGQSKIF 800
Cdd:cd14891  564 DNRYVVDQLRCSGILQTCEVLKVGLPTRVTYAELVDVYKPVLPPSVTRLFAENDRTlTQAILWAFRVPSDAYRLGRTRVF 643

                 ..
gi 45382679  801 FR 802
Cdd:cd14891  644 FR 645
MYSc_Myo43 cd14904
class XLIII myosin, motor domain; The class XLIII myosins are comprised of Stramenopiles. Not ...
99-802 1.24e-134

class XLIII myosin, motor domain; The class XLIII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276869  Cd Length: 653  Bit Score: 436.68  E-value: 1.24e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCT 177
Cdd:cd14904    1 PSILFNLKKRFAASKPYTYTNDIVIALNPYKWIDnLYGDHLHEQYLKKPRDKLQPHVYATSTAAYKHMLTNEMNQSILVS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  178 GESGAGKTENTKKVIQYLAHVASshkGRKDHNIPpespkpvkhqgelerQLLQANPILESFGNAKTVKNDNSSRFGKFIR 257
Cdd:cd14904   81 GESGAGKTETTKIVMNHLASVAG---GRKDKTIA---------------KVIDVNPLLESFGNAKTTRNDNSSRFGKFTQ 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  258 INFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFL--SNGYIPIPGQQDKDN 335
Cdd:cd14904  143 LQFDGRGKLIGAKCETYLLEKSRVVSIAEGERNYHIFYQLLAGLSSEERKEFGLDPNCQYQYLgdSLAQMQIPGLDDAKL 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  336 FQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQkLCHLLGMNVMEFTRAILTPRIKVGR 415
Cdd:cd14904  223 FASTQKSLSLIGLDNDAQRTLFKILSGVLHLGEVMFDKSDENGSRISNGSQLSQ-VAKMLGLPTTRIEEALCNRSVVTRN 301
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  416 DYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQ 495
Cdd:cd14904  302 ESVTVPLAPVEAEENRDALAKAIYSKLFDWMVVKINAAISTDDDRIKGQIGVLDIFGFEDFAHNGFEQFCINYANEKLQQ 381
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  496 LFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIErpaNPPGVLALLDEECWFPKATDKTFVEKL---VQEQGTHSK 572
Cdd:cd14904  382 KFTTDVFKTVEEEYIREGLQWDHIEYQ-DNQGIVEVID---GKMGIIALMNDHLRQPRGTEEALVNKIrtnHQTKKDNES 457
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  573 FQKPRQlkDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWkdeiqniqracfydnitglhdpp 652
Cdd:cd14904  458 IDFPKV--KRTQFIINHYAGPVTYETVGFMEKHRDTLQNDLLDLVLLSSLDLLTELF----------------------- 512
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  653 vdrivglDQVTGITETAFGSAYKTKKGMfRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRC 732
Cdd:cd14904  513 -------GSSEAPSETKEGKSGKGTKAP-KSLGSQFKTSLSQLMDNIKTTNTHYVRCIKPNANKSPTEFDKRMVVEQLRS 584
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45382679  733 NGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGfmDGKQACERMIRAL-ELDPNLYRIGQSKIFFR 802
Cdd:cd14904  585 AGVIEAIRITRSGYPSRLTPKELATRYAIMFPPSMHSK--DVRRTCSVFMTAIgRKSPLEYQIGKSLIYFK 653
MYSc_Myo35 cd14896
class XXXV myosin, motor domain; This class of metazoan myosins contains 2 IQ motifs, 2 MyTH4 ...
99-802 3.52e-134

class XXXV myosin, motor domain; This class of metazoan myosins contains 2 IQ motifs, 2 MyTH4 domains, a single FERM domain, and an SH3 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276861 [Multi-domain]  Cd Length: 644  Bit Score: 434.98  E-value: 3.52e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14896    1 SSVLLCLKKRFHLGRIYTFGGPILLSLNPHRSLPLFSEEVLASYHPRKALNTTPHIFAIAASAYRLSQSTGQDQCILLSG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLahvASSHKGRKDHNIppespkpvkhqgeleRQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14896   81 HSGSGKTEAAKKIVQFL---SSLYQDQTEDRL---------------RQPEDVLPILESFGHAKTILNANASRFGQVLRL 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDvTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYI-PIPGQQDKDNFQ 337
Cdd:cd14896  143 HLQ-HGVIVGASVSHYLLETSRVVFQAQAERSFHVFYELLAGLDPEEREQLSLQGPETYYYLNQGGAcRLQGKEDAQDFE 221
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  338 ETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQ--ASMPENTVAQKLCHLLGMNVmEFTRAILTPRIKV-G 414
Cdd:cd14896  222 GLLKALQGLGLCAEELTAIWAVLAAILQLGNICFSSSERESQevAAVSSWAEIHTAARLLQVPP-ERLEGAVTHRVTEtP 300
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  415 RDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGA-SFIGILDIAGFEIFELNSFEQLCINYTNEKL 493
Cdd:cd14896  301 YGRVSRPLPVEGAIDARDALAKTLYSRLFTWLLKRINAWLAPPGEAESdATIGVVDAYGFEALRVNGLEQLCINLASERL 380
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  494 QQLFNHTMFILEQEEYQREGIEWNFIDfGLDLQPCIDLIErpANPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKF 573
Cdd:cd14896  381 QLFSSQTLLAQEEEECQRELLPWVPIP-QPPRESCLDLLV--DQPHSLLSILDDQTWLSQATDHTFLQKCHYHHGDHPSY 457
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  574 QKPRQlkDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWkdeiqniQRAcfydnitglhdppv 653
Cdd:cd14896  458 AKPQL--PLPVFTVRHYAGTVTYQVHKFLNRNRDQLDPAVVEMLAQSQLQLVGSLF-------QEA-------------- 514
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  654 drivgldqvtgitetafGSAYKTKKGMfRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCN 733
Cdd:cd14896  515 -----------------EPQYGLGQGK-PTLASRFQQSLGDLTARLGRSHVYFIHCLNPNPGKLPGLFDVGHVTEQLRQA 576
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679  734 GVLEGIRICRQGFPNRIVFQEFRQRYEILTpNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14896  577 GILEAIGTRSEGFPVRVPFQAFLARFGALG-SERQEALSDRERCGAILSQVLGAESPLYHLGATKVLLK 644
MYSc_Myo47 cd14908
class XLVII myosin, motor domain; The class XLVII myosins are comprised of Stramenopiles. Not ...
99-802 1.43e-132

class XLVII myosin, motor domain; The class XLVII myosins are comprised of Stramenopiles. Not much is known about this myosin class. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276873 [Multi-domain]  Cd Length: 682  Bit Score: 432.02  E-value: 1.43e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYR--GKKRHE-------MPPHIYAISESAYRCMLQD- 168
Cdd:cd14908    1 PAILHSLSRRFFRGIIYTWTGPVLIAVNPFQRLPLYGKEILESYRqeGLLRSQgiespqaLGPHVFAIADRSYRQMMSEi 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  169 REDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKDHNIPPEspkpvkhQGELERQLLQANPILESFGNAKTVKNDN 248
Cdd:cd14908   81 RASQSILISGESGAGKTESTKIVMLYLTTLGNGEEGAPNEGEELG-------KLSIMDRVLQSNPILEAFGNARTLRNDN 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  249 SSRFGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGE--------HLKSDLLLEGFNNYRFL 320
Cdd:cd14908  154 SSRFGKFIELGFNRAGNLLGAKVQTYLLEKVRLPFHASGERNYHIFYQLLRGGDEeehekyefHDGITGGLQLPNEFHYT 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  321 SNGYIPIPGQ-QDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPE---NTVAQKLCHLLG 396
Cdd:cd14908  234 GQGGAPDLREfTDEDGLVYTLKAMRTMGWEESSIDTILDIIAGLLHLGQLEFESKEEDGAAEIAEegnEKCLARVAKLLG 313
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  397 MNVMEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKAL--DRTKRQGASfIGILDIAGFE 474
Cdd:cd14908  314 VDVDKLLRALTSKIIVVRGKEITTKLTPHKAYDARDALAKTIYGALFLWVVATVNSSInwENDKDIRSS-VGVLDIFGFE 392
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  475 IFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLALLDEECWFP-K 553
Cdd:cd14908  393 CFAHNSFEQLCINFTNEALQQQFNQFIFKLEQKEYEKESIEWAFIEFP-DNQDCLDTIQ--AKKKGILTMLDDECRLGiR 469
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  554 ATDKTFVEKLV--------QEQGTHSKFQKPRQLKDKADFCIIHYAGKVDYKADEWLM-KNmdplndnvatllhqssdkf 624
Cdd:cd14908  470 GSDANYASRLYetylpeknQTHSENTRFEATSIQKTKLIFAVRHFAGQVQYTVETTFCeKN------------------- 530
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  625 vaelwKDEIQNiqracfydnitglhdppvdrivgldqvtgitetafgsaykTKKGMFRTvGQLYKESLTKLMATLRNTNP 704
Cdd:cd14908  531 -----KDEIPL----------------------------------------TADSLFES-GQQFKAQLHSLIEMIEDTDP 564
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  705 NFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPnAIPK--------------- 769
Cdd:cd14908  565 HYIRCIKPNDAAKPDLVTRKRVTEQLRYGGVLEAVRVARSGYPVRLPHKDFFKRYRMLLP-LIPEvvlswsmerldpqkl 643
                        730       740       750
                 ....*....|....*....|....*....|....*....
gi 45382679  770 --GFMDGKQACERMIRALELDPNL----YRIGQSKIFFR 802
Cdd:cd14908  644 cvKKMCKDLVKGVLSPAMVSMKNIpedtMQLGKSKVFMR 682
MYSc_Myo41 cd14902
class XLI myosin, motor domain; The class XLI myosins are comprised of Stramenopiles. Not much ...
99-764 2.96e-131

class XLI myosin, motor domain; The class XLI myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276867 [Multi-domain]  Cd Length: 716  Bit Score: 429.31  E-value: 2.96e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMYR--------GKKRHEMPPHIYAISESAYRCMLQ-D 168
Cdd:cd14902    1 AALLQALSERFEHDQIYTSIGDILVALNPLKPLPdLYSESQLNAYKasmtstspVSQLSELPPHVFAIGGKAFGGLLKpE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  169 REDQSILCTGESGAGKTENTKKVIQYLAHVASSHKgrkdhnippESPKPVKHQGELERQLLQANPILESFGNAKTVKNDN 248
Cdd:cd14902   81 RRNQSILVSGESGSGKTESTKFLMQFLTSVGRDQS---------STEQEGSDAVEIGKRILQTNPILESFGNAQTIRNDN 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  249 SSRFGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLsNGYIP-- 326
Cdd:cd14902  152 SSRFGKFIKIQFGANNEIVGAQIVSYLLEKVRLLHQSPEERSFHIFYELLEGADKTLLDLLGLQKGGKYELL-NSYGPsf 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  327 --IPGQQDKDN--FQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKL---CHLLGMNV 399
Cdd:cd14902  231 arKRAVADKYAqlYVETVRAFEDTGVGELERLDIFKILAALLHLGNVNFTAENGQEDATAVTAASRFHLakcAELMGVDV 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  400 MEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALD--------RTKRQGASFIGILDIA 471
Cdd:cd14902  311 DKLETLLSSREIKAGVEVMVLKLTPEQAKEICGSLAKAIYGRLFTWLVRRLSDEINyfdsavsiSDEDEELATIGILDIF 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  472 GFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIERPANppGVLALLDEECWF 551
Cdd:cd14902  391 GFESLNRNGFEQLCINYANERLQAQFNEFVFVKEQQIYIAEGIDWKNISYP-SNAACLALFDDKSN--GLFSLLDQECLM 467
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  552 PKATDKTFVEKLVQEQGTHSKFqkprqlkdkadfCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKD 631
Cdd:cd14902  468 PKGSNQALSTKFYRYHGGLGQF------------VVHHFAGRVCYNVEQFVEKNTDALPADASDILSSSSNEVVVAIGAD 535
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  632 EiqniqracfydnitglhdppvdrivgldQVTGITETAfGSAYKTKKGMFRT--VGQLYKESLTKLMATLRNTNPNFVRC 709
Cdd:cd14902  536 E----------------------------NRDSPGADN-GAAGRRRYSMLRApsVSAQFKSQLDRLIVQIGRTEAHYVRC 586
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 45382679  710 IIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTP 764
Cdd:cd14902  587 LKPNEVKKPGIFDRERMVEQMRSVGVLEAVRIARHGYSVRLAHASFIELFSGFKC 641
MYSc_Myo34 cd14895
class XXXIV myosin, motor domain; Class XXXIV myosins are composed of an IQ motif, a short ...
100-763 2.21e-128

class XXXIV myosin, motor domain; Class XXXIV myosins are composed of an IQ motif, a short coiled-coil region, 5 tandem ANK repeats, and a carboxy-terminal FYVE domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276860 [Multi-domain]  Cd Length: 704  Bit Score: 420.90  E-value: 2.21e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPiyseniiEMYRGKKRHE-------MPPHIYAISESAYRCMLQ----- 167
Cdd:cd14895    2 AFVDYLAQRYGVDQVYCRSGAVLIAVNPFKHIP-------GLYDLHKYREempgwtaLPPHVFSIAEGAYRSLRRrlhep 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  168 --DREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKDHNippespkpvKHQGELERQLLQANPILESFGNAKTVK 245
Cdd:cd14895   75 gaSKKNQTILVSGESGAGKTETTKFIMNYLAESSKHTTATSSSK---------RRRAISGSELLSANPILESFGNARTLR 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  246 NDNSSRFGKFIRINF-----DVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFN--NYR 318
Cdd:cd14895  146 NDNSSRFGKFVRMFFeghelDTSLRMIGTSVETYLLEKVRVVHQNDGERNFHVFYELLAGAADDMKLELQLELLSaqEFQ 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  319 FLSNG--YIPIPGQQDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTD---------------QAS 381
Cdd:cd14895  226 YISGGqcYQRNDGVRDDKQFQLVLQSMKVLGFTDVEQAAIWKILSALLHLGNVLFVASSEDEgeedngaasapcrlaSAS 305
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  382 MPENTVAQKL---CHLLGMNVMEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTK 458
Cdd:cd14895  306 PSSLTVQQHLdivSKLFAVDQDELVSALTTRKISVGGETFHANLSLAQCGDARDAMARSLYAFLFQFLVSKVNSASPQRQ 385
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  459 ----------RQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDlQPC 528
Cdd:cd14895  386 falnpnkaanKDTTPCIAVLDIFGFEEFEVNQFEQFCINYANEKLQYQFIQDILLTEQQAHIEEGIKWNAVDYEDN-SVC 464
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  529 IDLIErpANPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQKPRqlKDKAD--FCIIHYAGKVDYKADEWLMKNM 606
Cdd:cd14895  465 LEMLE--QRPSGIFSLLDEECVVPKGSDAGFARKLYQRLQEHSNFSASR--TDQADvaFQIHHYAGAVRYQAEGFCEKNK 540
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  607 DPLNDNVATLLHQSSDKFVAELWKdeiqniqracFYD----NITGLHDPPVDRIVGLDQVTGItetafgsayktkkgmfr 682
Cdd:cd14895  541 DQPNAELFSVLGKTSDAHLRELFE----------FFKasesAELSLGQPKLRRRSSVLSSVGI----------------- 593
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  683 tvGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEIL 762
Cdd:cd14895  594 --GSQFKQQLASLLDVVQQTQTHYIRCIKPNDESASDQFDMAKVSSQLRYGGVLKAVEIMRQSYPVRMKHADFVKQYRLL 671

                 .
gi 45382679  763 T 763
Cdd:cd14895  672 V 672
PTZ00014 PTZ00014
myosin-A; Provisional
97-855 2.62e-128

myosin-A; Provisional


Pssm-ID: 240229 [Multi-domain]  Cd Length: 821  Bit Score: 424.44  E-value: 2.62e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    97 NEASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHE-MPPHIYAISESAYRCMLQDREDQSIL 175
Cdd:PTZ00014  108 NIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDkLPPHVFTTARRALENLHGVKKSQTII 187
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   176 CTGESGAGKTENTKKVIQYLAhvaSSHKGRKDHNIppespkpvkhqgelERQLLQANPILESFGNAKTVKNDNSSRFGKF 255
Cdd:PTZ00014  188 VSGESGAGKTEATKQIMRYFA---SSKSGNMDLKI--------------QNAIMAANPVLEAFGNAKTIRNNNSSRFGRF 250
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   256 IRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDN 335
Cdd:PTZ00014  251 MQLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPKCLDVPGIDDVKD 330
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   336 FQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISF--KKERNTDQASM--PEN-TVAQKLCHLLGMNVMEFTRAILTPR 410
Cdd:PTZ00014  331 FEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIegKEEGGLTDAAAisDESlEVFNEACELLFLDYESLKKELTVKV 410
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   411 IKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGAsFIGILDIAGFEIFELNSFEQLCINYTN 490
Cdd:PTZ00014  411 TYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKV-FIGMLDIFGFEVFKNNSLEQLFINITN 489
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   491 EKLQQLFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppGVLALLDEECWFPKATDKTFVEKLVQEQGTH 570
Cdd:PTZ00014  490 EMLQKNFVDIVFERESKLYKDEGISTEELEY-TSNESVIDLLCGKGK--SVLSILEDQCLAPGGTDEKFVSSCNTNLKNN 566
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   571 SKFQKPRQLKDKaDFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiQNIQRAcfydnitglhd 650
Cdd:PTZ00014  567 PKYKPAKVDSNK-NFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEG--VEVEKG----------- 632
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   651 ppvdrivgldqvtgitetafgsayKTKKGMFrtVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQL 730
Cdd:PTZ00014  633 ------------------------KLAKGQL--IGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQL 686
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   731 RCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR---AGVLA 807
Cdd:PTZ00014  687 HSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKkdaAKELT 766
                         730       740       750       760
                  ....*....|....*....|....*....|....*....|....*...
gi 45382679   808 HLEEERDLKITDIIIFFQAVCRGYLARKAFAKKqqqlsaLKILQRNCA 855
Cdd:PTZ00014  767 QIQREKLAAWEPLVSVLEALILKIKKKRKVRKN------IKSLVRIQA 808
MYSc_Myo14 cd14876
class XIV myosin, motor domain; These myosins localize to plasma membranes of the ...
99-800 2.47e-123

class XIV myosin, motor domain; These myosins localize to plasma membranes of the intracellular parasites and may be involved in the cell invasion process. Their known functions include: transporting phagosomes to the nucleus and perturbing the developmentally regulated elimination of the macronucleus during conjugation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to their motor domain these myosins have a MyTH4-FERM protein domain combination. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276843  Cd Length: 649  Bit Score: 404.37  E-value: 2.47e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRH-EMPPHIYAISESAYRCMLQDREDQSILCT 177
Cdd:cd14876    1 PCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNATDEWIRKYRDAPDLtKLPPHVFYTARRALENLHGVNKSQTIIVS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  178 GESGAGKTENTKKVIQYLAhvaSSHKGRKDHNIppespkpvkhqgelERQLLQANPILESFGNAKTVKNDNSSRFGKFIR 257
Cdd:cd14876   81 GESGAGKTEATKQIMRYFA---SAKSGNMDLRI--------------QTAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQ 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  258 INFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQ 337
Cdd:cd14876  144 LDVASEGGIRYGSVVAFLLEKSRIVTQDDNERSYHIFYQLLKGADSEMKSKYHLLGLKEYKFLNPKCLDVPGIDDVADFE 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  338 ETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISF--KKERNTDQASMPEN---TVAQKLCHLLGMNVMEFTRAILTPRIK 412
Cdd:cd14876  224 EVLESLKSMGLTEEQIDTVFSIVSGVLLLGNVKItgKTEQGVDDAAAISNeslEVFKEACSLLFLDPEALKRELTVKVTK 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  413 VGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDrtKRQG-ASFIGILDIAGFEIFELNSFEQLCINYTNE 491
Cdd:cd14876  304 AGGQEIEGRWTKDDAEMLKLSLAKAMYDKLFLWIIRNLNSTIE--PPGGfKNFMGMLDIFGFEVFKNNSLEQLFINITNE 381
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  492 KLQQLFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppGVLALLDEECWFPKATDKTFVEKLVQEQGTHS 571
Cdd:cd14876  382 MLQKNFIDIVFERESKLYKDEGIPTAELEY-TSNAEVIDVLCGKGK--SVLSILEDQCLAPGGSDEKFVSACVSKLKSNG 458
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  572 KFqKPRQLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiQNIQRAcfydnitglhdp 651
Cdd:cd14876  459 KF-KPAKVDSNINFIVVHTIGDIQYNAEGFLFKNKDVLRAELVEVVQASTNPVVKALFEG--VVVEKG------------ 523
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  652 pvdrivgldqvtgitetafgsayKTKKGMFrtVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLR 731
Cdd:cd14876  524 -----------------------KIAKGSL--IGSQFLKQLESLMGLINSTEPHFIRCIKPNETKKPLEWNSSKVLIQLH 578
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679  732 CNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIF 800
Cdd:cd14876  579 ALSILEALQLRQLGYSYRRPFEEFLYQFKFLDLGIANDKSLDPKVAALKLLESSGLSEDEYAIGKTMVF 647
MYSc_Myo18 cd01386
class XVIII myosin, motor domain; Many members of this class contain a N-terminal PDZ domain ...
99-802 2.41e-122

class XVIII myosin, motor domain; Many members of this class contain a N-terminal PDZ domain which is commonly found in proteins establishing molecular complexes. The motor domain itself does not exhibit ATPase activity, suggesting that it functions as an actin tether protein. It also has two IQ domains that probably bind light chains or related calmodulins and a C-terminal tail with two sections of coiled-coil domains, which are thought to mediate homodimerization. The function of these myosins are largely unknown. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276837 [Multi-domain]  Cd Length: 689  Bit Score: 403.23  E-value: 2.41e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd01386    1 SSVLHTLRQRYGANLIHTYAGPSLIVINPRHPLAVYSEKVAKMFKGCRREDMPPHIYASAQSAYRAMLMSRRDQSIVLLG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVASSHKGRkdhnIPPESpkpvkhqgelerqlLQA-NPILESFGNAKTVKNDNSSRFGKFIR 257
Cdd:cd01386   81 RSGSGKTTNCRHILEYLVTAAGSVGGV----LSVEK--------------LNAaLTVLEAFGNVRTALNGNATRFSQLFS 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  258 INFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLE--GFNNYRFLSNGYIPIPGQQDKDN 335
Cdd:cd01386  143 LDFDQAGQLASASIQTLLLERSRVARRPEGESNFNVFYYLLAGADAALRTELHLNqlAESNSFGIVPLQKPEDKQKAAAA 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  336 FQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAI--------- 406
Cdd:cd01386  223 FSKLQAAMKTLGISEEEQRAIWSILAAIYHLGAAGATKAASAGRKQFARPEWAQRAAYLLGCTLEELSSAIfkhhlsggp 302
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  407 ---LTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASfIGILDIAGFEIFELN---- 479
Cdd:cd01386  303 qqsTTSSGQESPARSSSGGPKLTGVEALEGFAAGLYSELFAAVVSLINRSLSSSHHSTSS-ITIVDTPGFQNPAHSgsqr 381
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  480 --SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERP---ANPP---------GVLALL 545
Cdd:cd01386  382 gaTFEDLCHNYAQERLQLLFHERTFVAPLERYKQENVEVDFDLPELSPGALVALIDQApqqALVRsdlrdedrrGLLWLL 461
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  546 DEECWFPKATDKTFVEKLVQEQG--THSKFQKPRQLKDKA-DFCIIHYAGK--VDYKADEWLMK-NMDPLNDNVATLLHQ 619
Cdd:cd01386  462 DEEALYPGSSDDTFLERLFSHYGdkEGGKGHSLLRRSEGPlQFVLGHLLGTnpVEYDVSGWLKAaKENPSAQNATQLLQE 541
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  620 SSDKFVAelwkdeiqniqracfydnitglhdppvdrivgldqvtgitetafgsayKTKKGMFRTVgqlyKESLTKLMATL 699
Cdd:cd01386  542 SQKETAA------------------------------------------------VKRKSPCLQI----KFQVDALIDTL 569
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  700 RNTNPNFVRCIIPNH--EKRAGK----------LDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAI 767
Cdd:cd01386  570 RRTGLHFVHCLLPQHnaGKDERStsspaagdelLDVPLLRSQLRGSQLLDALRLYRQGFPDHMPLGEFRRRFQVLAPPLT 649
                        730       740       750       760
                 ....*....|....*....|....*....|....*....|
gi 45382679  768 PKGF-----MDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd01386  650 KKLGlnsevADERKAVEELLEELDLEKSSYRIGLSQVFFR 689
MYSc_Myo19 cd14880
class XIX myosin, motor domain; Monomeric myosin-XIX (Myo19) functions as an actin-based motor ...
99-764 2.24e-116

class XIX myosin, motor domain; Monomeric myosin-XIX (Myo19) functions as an actin-based motor for mitochondrial movement in vertebrate cells. It contains a variable number of IQ domains. Human myo19 contains a motor domain, three IQ motifs, and a short tail. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276846 [Multi-domain]  Cd Length: 658  Bit Score: 384.97  E-value: 2.24e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMYRGKKR-HEMPPHIYAISESAYRCMLQDRE--DQSI 174
Cdd:cd14880    1 ETVLRCLQARYTADTFYTNAGCTLVALNPFKPVPqLYSPELMREYHAAPQpQKLKPHIFTVGEQTYRNVKSLIEpvNQSI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  175 LCTGESGAGKTENTKKVIQYLAHVASShkgrkdhnipPESPKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGK 254
Cdd:cd14880   81 VVSGESGAGKTWTSRCLMKFYAVVAAS----------PTSWESHKIAERIEQRILNSNPVMEAFGNACTLRNNNSSRFGK 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  255 FIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGyipiPGQQDKD 334
Cdd:cd14880  151 FIQLQLNRAQQMTGAAVQTYLLEKTRVACQAPSERNFHIFYQICKGASADERLQWHLPEGAAFSWLPNP----ERNLEED 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  335 NFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTV---AQKLCHLLGMNVMEFTRAILTPRI 411
Cdd:cd14880  227 CFEVTREAMLHLGIDTPTQNNIFKVLAGLLHLGNIQFADSEDEAQPCQPMDDTkesVRTSALLLKLPEDHLLETLQIRTI 306
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  412 KVGRDYV--QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGFEIFELNSFEQLCINYT 489
Cdd:cd14880  307 RAGKQQQvfKKPCSRAECDTRRDCLAKLIYARLFDWLVSVINSSICADTDSWTTFIGLLDVYGFESFPENSLEQLCINYA 386
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  490 NEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLALLDEECWFPKATDKTFVEKLVQEQGT 569
Cdd:cd14880  387 NEKLQQHFVAHYLRAQQEEYAVEGLEWSFINYQ-DNQTCLDLIE--GSPISICSLINEECRLNRPSSAAQLQTRIESALA 463
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  570 HSKFQKPRQLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIQNIQRacfyDNITGLH 649
Cdd:cd14880  464 GNPCLGHNKLSREPSFIVVHYAGPVRYHTAGLVEKNKDPVPPELTRLLQQSQDPLLQKLFPANPEEKTQ----EEPSGQS 539
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  650 DPPVdrivgldqvtgitetafgsayktkkgmfRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQ 729
Cdd:cd14880  540 RAPV----------------------------LTVVSKFKASLEQLLQVLHSTTPHYIRCIKPNSQCQAQTFLQEEVLSQ 591
                        650       660       670
                 ....*....|....*....|....*....|....*
gi 45382679  730 LRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTP 764
Cdd:cd14880  592 LEACGLVETIHISAAGFPIRVSHQNFVERYKLLRR 626
MYSc_Myo45 cd14906
class XLV myosin, motor domain; The class XLVI myosins are comprised of slime molds ...
99-765 2.54e-115

class XLV myosin, motor domain; The class XLVI myosins are comprised of slime molds Dictyostelium and Polysphondylium. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276871 [Multi-domain]  Cd Length: 715  Bit Score: 383.95  E-value: 2.54e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMYRGKKR-HEMPPHIYAISESAYRCMLQDREDQSILC 176
Cdd:cd14906    1 AIILNNLGKRYKSDSIYTYIGNVLISINPYKDISsIYSNLILNEYKDINQnKSPIPHIYAVALRAYQSMVSEKKNQSIII 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  177 TGESGAGKTENTKKVIQYLAHVASSHKGRKDHNippespkpVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFI 256
Cdd:cd14906   81 SGESGSGKTEASKTILQYLINTSSSNQQQNNNN--------NNNNNSIEKDILTSNPILEAFGNSRTTKNHNSSRFGKFL 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  257 RINFDVTGYIV-GANIETYLLEKSR-AVRQAKDERTFHIFYQLLAGAGehlKSDLLLEGFNN----YRFL---------- 320
Cdd:cd14906  153 KIEFRSSDGKIdGASIETYLLEKSRiSHRPDNINLSYHIFYYLVYGAS---KDERSKWGLNNdpskYRYLdarddvissf 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  321 ----SNGYIPIPGQQDKD-NFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKL---C 392
Cdd:cd14906  230 ksqsSNKNSNHNNKTESIeSFQLLKQSMESMSINKEQCDAIFLSLAAILHLGNIEFEEDSDFSKYAYQKDKVTASLesvS 309
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  393 HLLGMNVMEFTRAILTPRIKV-GRDYVQ-KAQTKEQADFAVEALAKATYERLFRWLVHRINKALDR----------TKRQ 460
Cdd:cd14906  310 KLLGYIESVFKQALLNRNLKAgGRGSVYcRPMEVAQSEQTRDALSKSLYVRLFKYIVEKINRKFNQntqsndlaggSNKK 389
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  461 GASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIERPANppG 540
Cdd:cd14906  390 NNLFIGVLDIFGFENLSSNSLEQLLINFTNEKLQQQFNLNVFENEQKEYLSEGIPWSNSNF-IDNKECIELIEKKSD--G 466
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  541 VLALLDEECWFPKATDKTFVEKLVQE-QGTHSKFQkpRQLKdKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQ 619
Cdd:cd14906  467 ILSLLDDECIMPKGSEQSLLEKYNKQyHNTNQYYQ--RTLA-KGTLGIKHFAGDVTYQTDGWLEKNRDSLYSDVEDLLLA 543
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  620 SSDKFVAELWKDEIQNiqracfydnitglhdPPVDrivgldqvtgitetafgsayKTKKGMFRTVGQLYKESLTKLMATL 699
Cdd:cd14906  544 SSNFLKKSLFQQQITS---------------TTNT--------------------TKKQTQSNTVSGQFLEQLNQLIQTI 588
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679  700 RNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPN 765
Cdd:cd14906  589 NSTSVHYIRCIKPNQTMDCNNFNNVHVLSQLRNVGVLNTIKVRKMGYSYRRDFNQFFSRYKCIVDM 654
MYSc_Myo13 cd14875
class XIII myosin, motor domain; These myosins have an N-terminal motor domain, a light-chain ...
99-802 4.11e-110

class XIII myosin, motor domain; These myosins have an N-terminal motor domain, a light-chain binding domain, and a C-terminal GPA/Q-rich domain. There is little known about the function of this myosin class. Two of the earliest members identified in this class are green alga Acetabularia cliftonii, Aclmyo1 and Aclmyo2. They are striking with their short tail of Aclmyo1 of 18 residues and the maximum of 7 IQ motifs in Aclmyo2. It is thought that these myosins are involved in organelle transport and tip growth. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276842 [Multi-domain]  Cd Length: 664  Bit Score: 367.21  E-value: 4.11e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYS-GLIYTYSGLFCVVINPYKNLPIYSENIIEMYRG-KKRHEMPPHIYAISESAYRCM-LQDREDQSIL 175
Cdd:cd14875    1 ATLLHCIKERFEKlHQQYSLMGEMVLSVNPFRLMPFNSEEERKKYLAlPDPRLLPPHIWQVAHKAFNAIfVQGLGNQSVV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  176 CTGESGAGKTENTKKVIQYLAHVASSHKGRkdhnippESPKPVKHQgeLERQLLQANPILESFGNAKTVKNDNSSRFGKF 255
Cdd:cd14875   81 ISGESGSGKTENAKMLIAYLGQLSYMHSSN-------TSQRSIADK--IDENLKWSNPVMESFGNARTVRNDNSSRFGKY 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  256 IRINFD-VTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDL-LLEGFNNYRFLSNGYI----PIPG 329
Cdd:cd14875  152 IKLYFDpTSGVMVGGQTVTYLLEKSRIIMQSPGERNYHIFYEMLAGLSPEEKKELgGLKTAQDYKCLNGGNTfvrrGVDG 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  330 Q--QDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNtDQASMPENTVAQKLCHLLGMNVMEFTRAIL 407
Cdd:cd14875  232 KtlDDAHEFQNVRHALSMIGVELETQNSIFRVLASILHLMEVEFESDQN-DKAQIADETPFLTACRLLQLDPAKLRECFL 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  408 tprIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALD-RTKRQGASFIGILDIAGFEIFELNSFEQLCI 486
Cdd:cd14875  311 ---VKSKTSLVTILANKTEAEGFRNAFCKAIYVGLFDRLVEFVNASITpQGDCSGCKYIGLLDIFGFENFTRNSFEQLCI 387
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  487 NYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIErpANPPGVLALLDEECWFPKATDKTFVEKLVQE 566
Cdd:cd14875  388 NYANESLQNHYNKYTFINDEEECRREGIQIPKIEFP-DNSECVNMFD--QKRTGIFSMLDEECNFKGGTTERFTTNLWDQ 464
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  567 QGTHSK-FQKPRQLKDKaDFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIQNIQRAcfydni 645
Cdd:cd14875  465 WANKSPyFVLPKSTIPN-QFGVNHYAAFVNYNTDEWLEKNTDALKEDMYECVSNSTDEFIRTLLSTEKGLARRK------ 537
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  646 tglhdppvdrivgldqvtgitetafgsayktkkgmfRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHL 725
Cdd:cd14875  538 ------------------------------------QTVAIRFQRQLTDLRTELESTETQFIRCIKPNMEASPSFLDNLL 581
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  726 VLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGK--QACERMIRALE-----LDPNlYRIGQSK 798
Cdd:cd14875  582 VGSQLESAGVLQTIALKRQGYPVRRPIEQFCRYFYLIMPRSTASLFKQEKysEAAKDFLAYYQrlygwAKPN-YAVGKTK 660

                 ....
gi 45382679  799 IFFR 802
Cdd:cd14875  661 VFLR 664
MYSc_Myo25 cd14886
class XXV myosin, motor domain; These myosins are MyTH-FERM myosins that play a role in cell ...
99-802 3.24e-109

class XXV myosin, motor domain; These myosins are MyTH-FERM myosins that play a role in cell adhesion and filopodia formation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276851  Cd Length: 650  Bit Score: 363.82  E-value: 3.24e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMYRGKKRH-----EMPPHIYAISESAYRCMLQDREDQ 172
Cdd:cd14886    1 AVVIDILRDRFAKDKIYTYAGKLLVALNPFKQIRnLYGTEVIGRYRQADTSrgfpsDLPPHSYAVAQSALNGLISDGISQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  173 SILCTGESGAGKTENTKKVIQYLAHVASSHkgrkdhnippespkpvkhQGELERQLLQANPILESFGNAKTVKNDNSSRF 252
Cdd:cd14886   81 SCIVSGESGAGKTETAKQLMNFFAYGHSTS------------------STDVQSLILGSNPLLESFGNAKTLRNNNSSRF 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  253 GKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYI-PIPGQQ 331
Cdd:cd14886  143 GKFIKLLVGPDGGLKGGKITSYMLELSRIEFQSTNERNYHIFYQCIKGLSPEEKKSLGFKSLESYNFLNASKCyDAPGID 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  332 DKDNFQETMEAMHIMgFSHDEILSMLKVVSSVLQFGNISFKKERN--TDQASMPENTVA-QKLCHLLGMNVMEFTRAILT 408
Cdd:cd14886  223 DQKEFAPVRSQLEKL-FSKNEIDSFYKCISGILLAGNIEFSEEGDmgVINAAKISNDEDfGKMCELLGIESSKAAQAIIT 301
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  409 PRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKAL---DRTKRqgasFIGILDIAGFEIFELNSFEQLC 485
Cdd:cd14886  302 KVVVINNETIISPVTQAQAEVNIRAVAKDLYGALFELCVDTLNEIIqfdADARP----WIGILDIYGFEFFERNTYEQLL 377
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  486 INYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIERPANppGVLALLDEECWFPKATDKTFVeklvq 565
Cdd:cd14886  378 INYANERLQQYFINQVFKSEIQEYEIEGIDHSMITFT-DNSNVLAVFDKPNL--SIFSFLEEQCLIQTGSSEKFT----- 449
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  566 eQGTHSKFQKPRQLKDKA---DFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiqniqracfY 642
Cdd:cd14886  450 -SSCKSKIKNNSFIPGKGsqcNFTIVHTAATVTYNTEEFVDKNKHKLSVDILELLMGSTNPIVNKAFSD----------I 518
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  643 DNITGLhdppvdrivgldqvtgitetafgsayktKKGMFrtVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLD 722
Cdd:cd14886  519 PNEDGN----------------------------MKGKF--LGSTFQLSIDQLMKTLSATKSHFIRCIKTNQDKVPNKYE 568
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  723 PHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILT--PNAIPKGFMDGKQACERMIRALELDPNLYRIGQSKIF 800
Cdd:cd14886  569 TKSVYNQLISLSIFESIQTIHRGFAYNDTFEEFFHRNKILIshNSSSQNAGEDLVEAVKSILENLGIPCSDYRIGKTKVF 648

                 ..
gi 45382679  801 FR 802
Cdd:cd14886  649 LR 650
MYSc_Myo38 cd14899
class XXXVIII myosin; The class XXXVIII myosins are comprised of Stramenopiles. Not much is ...
99-759 1.76e-108

class XXXVIII myosin; The class XXXVIII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276864 [Multi-domain]  Cd Length: 717  Bit Score: 364.03  E-value: 1.76e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMY----------RGKKRHEMPPHIYAISESAYRCMLQ 167
Cdd:cd14899    1 ASILNALRLRYERHAIYTHIGDILISINPFQDLPqLYGDEILRGYaydhnsqfgdRVTSTDPREPHLFAVARAAYIDIVQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  168 DREDQSILCTGESGAGKTENTKKVIQYLAhVASSHKGRKDHNIPPESPKPVKHQGELERQLLQANPILESFGNAKTVKND 247
Cdd:cd14899   81 NGRSQSILISGESGAGKTEATKIIMTYFA-VHCGTGNNNLTNSESISPPASPSRTTIEEQVLQSNPILEAFGNARTVRND 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  248 NSSRFGKFIRINF-DVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAG-----AGEHLKSDLLLEGFNNYRFLS 321
Cdd:cd14899  160 NSSRFGKFIELRFrDERRRLAGARIRTYLLEKIRVIKQAPHERNFHIFYELLSAdnncvSKEQKQVLALSGGPQSFRLLN 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  322 NGYIPI--PGQQDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKK--ERNTDQASMPENTVAQ-------- 389
Cdd:cd14899  240 QSLCSKrrDGVKDGVQFRATKRAMQQLGMSEGEIGGVLEIVAAVLHMGNVDFEQipHKGDDTVFADEARVMSsttgafdh 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  390 --KLCHLLGMNVMEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRT---------- 457
Cdd:cd14899  320 ftKAAELLGVSTEALDHALTKRWLHASNETLVVGVDVAHARNTRNALTMECYRLLFEWLVARVNNKLQRQasapwgades 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  458 ----KRQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCIDLIE 533
Cdd:cd14899  400 dvddEEDATDFIGLLDIFGFEDMAENSFEQLCINYANEALQHQFNQYIFEEEQRLYRDEGIRWSFVDFP-NNRACLELFE 478
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  534 RpaNPPGVLALLDEECWFPKATDKTFVEKL---VQEQGTHSKFQKPRQLKDKADFCIIHYAGKVDYKADEWLMKNMDPLN 610
Cdd:cd14899  479 H--RPIGIFSLTDQECVFPQGTDRALVAKYyleFEKKNSHPHFRSAPLIQRTTQFVVAHYAGCVTYTIDGFLAKNKDSFC 556
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  611 DNVATLLHQSSDKFVAELwkdeiqniqracfydnITGLHDPPVDRIVGLDQVTGITETAFGSAYKTKkgmfrTVGQLYKE 690
Cdd:cd14899  557 ESAAQLLAGSSNPLIQAL----------------AAGSNDEDANGDSELDGFGGRTRRRAKSAIAAV-----SVGTQFKI 615
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679  691 SLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRY 759
Cdd:cd14899  616 QLNELLSTVRATTPRYVRCIKPNDSHVGSLFQSTRVVEQLRSGGVLEAVRVARAGFPVRLTHKQFLGRY 684
MYSc_Myo26 cd14887
class XXVI myosin, motor domain; These MyTH-FERM myosins are thought to be related to the ...
99-802 3.19e-95

class XXVI myosin, motor domain; These MyTH-FERM myosins are thought to be related to the other myosins that have a MyTH4 domain such as class III, VII, IX, X , XV, XVI, XVII, XX, XXII, XXV, and XXXIV. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276852  Cd Length: 725  Bit Score: 325.83  E-value: 3.19e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYS--------GLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDRE 170
Cdd:cd14887    1 PNLLENLYQRYNKayinkenrNCIYTYTGTLLIAVNPYRFFNLYDRQWISRFDTEANSRLVPHPFGLAEFAYCRLVRDRR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  171 DQSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKDHNippespkpvkhqgeLERQLLQANPILESFGNAKTVKNDNSS 250
Cdd:cd14887   81 SQSILISGESGAGKTETSKHVLTYLAAVSDRRHGADSQG--------------LEARLLQSGPVLEAFGNAHTVLNANSS 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  251 RFGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFlsngyipipgq 330
Cdd:cd14887  147 RFGKMLLLHFTGRGKLTRASVATYLLANERVVRIPSDEFSFHIFYALCNAAVAAATQKSSAGEGDPEST----------- 215
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  331 qDKDNFQETMEAMHIMGFSHDEIlsmLKVVSSVLQFGNISFKKERNTDQASMPENT--------VAQKLCHLL------- 395
Cdd:cd14887  216 -DLRRITAAMKTVGIGGGEQADI---FKLLAAILHLGNVEFTTDQEPETSKKRKLTsvsvgceeTAADRSHSSevkclss 291
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  396 GMNVMEFTRAILT--------PRIKVGRDYV------------QKAQTKEQADFAVEALAKATYERLFRWLVHRINKALD 455
Cdd:cd14887  292 GLKVTEASRKHLKtvarllglPPGVEGEEMLrlalvsrsvretRSFFDLDGAAAARDAACKNLYSRAFDAVVARINAGLQ 371
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  456 RTKR-------------QGASFIGILDIAGFEIFE---LNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFI 519
Cdd:cd14887  372 RSAKpsesdsdedtpstTGTQTIGILDLFGFEDLRnhsKNRLEQLCINYANERLHCFLLEQLILNEHMLYTQEGVFQNQD 451
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  520 --DFGLDLQPCIDLIERPAN---------------------PPGVLALLDE------ECWFPKATDKTFVEKLVQEQGTH 570
Cdd:cd14887  452 csAFPFSFPLASTLTSSPSStspfsptpsfrsssafatspsLPSSLSSLSSslssspPVWEGRDNSDLFYEKLNKNIINS 531
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  571 SKFQK--PRQLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNdnvatllhqssdkfvaelwkDEIQNIQRACFYdnitgl 648
Cdd:cd14887  532 AKYKNitPALSRENLEFTVSHFACDVTYDARDFCRANREATS--------------------DELERLFLACST------ 585
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  649 hdppVDRIVGLDQVTGItetafgSAYKTKKgmfRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLD 728
Cdd:cd14887  586 ----YTRLVGSKKNSGV------RAISSRR---STLSAQFASQLQQVLKALQETSCHFIRCVKPNRVQEAGIFEDAYVHR 652
                        730       740       750       760       770       780       790
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679  729 QLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIpKGFMDGKQACERMIRALELDPNLYRIGQSKIFFR 802
Cdd:cd14887  653 QLRCSGMSDLLRVMADGFPCRLPYVELWRRYETKLPMAL-REALTPKMFCKIVLMFLEINSNSYTFGKTKIFFR 725
MYSc_Myo17 cd14879
class XVII myosin, motor domain; This fungal myosin which is also known as chitin synthase ...
96-801 1.06e-94

class XVII myosin, motor domain; This fungal myosin which is also known as chitin synthase uses its motor domain to tether its vesicular cargo to peripheral actin. It works in opposition to dynein, contributing to the retention of Mcs1 vesicles at the site of cell growth and increasing vesicle fusion necessary for polarized growth. Class 17 myosins consist of a N-terminal myosin motor domain with Cyt-b5, chitin synthase 2, and a DEK_C domains at it C-terminus. The chitin synthase region contains several transmembrane domains by which myosin 17 is thought to bind secretory vesicles. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276845 [Multi-domain]  Cd Length: 647  Bit Score: 321.81  E-value: 1.06e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   96 LNEASVLHNLKDRYYSGLIYTY---SGLfcVVINPYKNLPIYSENIIEMYR-------GKKRHEMPPHIYAISESAYRCM 165
Cdd:cd14879    1 PSDDAITSHLASRFRSDLPYTRlgsSAL--VAVNPYKYLSSNSDASLGEYGseyydttSGSKEPLPPHAYDLAARAYLRM 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  166 LQDREDQSILCTGESGAGKTENTKKVIQYLAHVaSSHkgrkdhnippeSPKPVKhqgeLERQLLQANPILESFGNAKTVK 245
Cdd:cd14879   79 RRRSEDQAVVFLGETGSGKSESRRLLLRQLLRL-SSH-----------SKKGTK----LSSQISAAEFVLDSFGNAKTLT 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  246 NDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFL--SNG 323
Cdd:cd14879  143 NPNASRFGRYTELQFNERGRLIGAKVLDYRLERSRVASVPTGERNFHVFYYLLAGASPEERQHLGLDDPSDYALLasYGC 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  324 Y--IPIPGQQDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISF--KKERNTDQASMpENT-VAQKLCHLLGMN 398
Cdd:cd14879  223 HplPLGPGSDDAEGFQELKTALKTLGFKRKHVAQICQLLAAILHLGNLEFtyDHEGGEESAVV-KNTdVLDIVAAFLGVS 301
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  399 VMEFtRAILTPRIK-VGRD----YVQKAQTKEQADfaveALAKATYERLFRWLVHRINKALDRTKRQGASFIGILDIAGF 473
Cdd:cd14879  302 PEDL-ETSLTYKTKlVRKElctvFLDPEGAAAQRD----ELARTLYSLLFAWVVETINQKLCAPEDDFATFISLLDFPGF 376
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  474 EIF---ELNSFEQLCINYTNEKLQ-----QLFNHTMFILEQEEYQREGIEWNfidfglDLQPCIDLIERPanPPGVLALL 545
Cdd:cd14879  377 QNRsstGGNSLDQFCVNFANERLHnyvlrSFFERKAEELEAEGVSVPATSYF------DNSDCVRLLRGK--PGGLLGIL 448
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  546 DEEC-WFPKATDKTFVEKLVQEQGTHSKFQKPRQLKDKAD---FCIIHYAGKVDYKADEWLMKNMDPLndnvatllhqSS 621
Cdd:cd14879  449 DDQTrRMPKKTDEQMLEALRKRFGNHSSFIAVGNFATRSGsasFTVNHYAGEVTYSVEGFLERNGDVL----------SP 518
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  622 DkFVAelwkdeiqniqracfydnitglhdppvdrivgldqvtgitetafgsayktkkgMFRTVGQLyKESLTKLMATLRN 701
Cdd:cd14879  519 D-FVN-----------------------------------------------------LLRGATQL-NAALSELLDTLDR 543
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  702 TNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPnaipkgFMDGKQACERM 781
Cdd:cd14879  544 TRLWSVFCIRPNDSQLPNSFDKRRVKAQIRSLGLPELAARLRVEYVVSLEHAEFCERYKSTLR------GSAAERIRQCA 617
                        730       740
                 ....*....|....*....|
gi 45382679  782 IRALELDPNLYRIGQSKIFF 801
Cdd:cd14879  618 RANGWWEGRDYVLGNTKVFL 637
MYSc_Myo37 cd14898
class XXXVII myosin, motor domain; The class XXXVIII myosins are comprised of fungi. Not much ...
100-766 2.58e-93

class XXXVII myosin, motor domain; The class XXXVIII myosins are comprised of fungi. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276863  Cd Length: 578  Bit Score: 315.30  E-value: 2.58e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNlpIYSENIIEMYRGKKRHeMPPHIYAISESAYRCMLQdREDQSILCTGE 179
Cdd:cd14898    2 ATLEILEKRYASGKIYTKSGLVFLALNPYET--IYGAGAMKAYLKNYSH-VEPHVYDVAEASVQDLLV-HGNQTIVISGE 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  180 SGAGKTENTKKVIQYLAHVASSHKgrkdhnippespkpvkhqgELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRIN 259
Cdd:cd14898   78 SGSGKTENAKLVIKYLVERTASTT-------------------SIEKLITAANLILEAFGNAKTQLNDNSSRFGKRIKLK 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  260 FDvtGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDlllegFNNYRFLSNGYIPIPgqQDKDNFQET 339
Cdd:cd14898  139 FD--GKITGAKFETYLLEKSRVTHHEKGERNFHIFYQFCASKRLNIKND-----FIDTSSTAGNKESIV--QLSEKYKMT 209
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  340 MEAMHIMGFSHdeILSMLKVVSSVLQFGNISFKKERNTDQASmpeNTVAQKLCHLLGMNVMEFTRAILTPRIKVGRDYVQ 419
Cdd:cd14898  210 CSAMKSLGIAN--FKSIEDCLLGILYLGSIQFVNDGILKLQR---NESFTEFCKLHNIQEEDFEESLVKFSIQVKGETIE 284
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  420 KAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTkrqGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNH 499
Cdd:cd14898  285 VFNTLKQARTIRNSMARLLYSNVFNYITASINNCLEGS---GERSISVLDIFGFEIFESNGLDQLCINWTNEKIQNDFIK 361
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  500 TMFILEQEEYQREGIEWNFIDFgLDLQPCIDLIERPAnppGVLALLDEECWFPKATDKTFVEKLvqeqgthSKFQKPRqL 579
Cdd:cd14898  362 KMFRAKQGMYKEEGIEWPDVEF-FDNNQCIRDFEKPC---GLMDLISEESFNAWGNVKNLLVKI-------KKYLNGF-I 429
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  580 KDKADFCII--HYAGKVDYKADEWLMKNMDplndnvatllhqssdkfvaelwkdeiqniqracfydnitglhdppvdriv 657
Cdd:cd14898  430 NTKARDKIKvsHYAGDVEYDLRDFLDKNRE-------------------------------------------------- 459
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  658 gldqvtGITETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLE 737
Cdd:cd14898  460 ------KGQLLIFKNLLINDEGSKEDLVKYFKDSMNKLLNSINETQAKYIKCIRPNEECRPWCFDRDLVSKQLAECGILE 533
                        650       660
                 ....*....|....*....|....*....
gi 45382679  738 GIRICRQGFPNRIVFQEFRQRYEILTPNA 766
Cdd:cd14898  534 TIRLSKQCFPQEIPKDRFEERYRILGITL 562
MYSc_Myo16 cd14878
class XVI myosin, motor domain; These XVI type myosins are also known as Neuronal ...
99-802 2.74e-90

class XVI myosin, motor domain; These XVI type myosins are also known as Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 3/NYAP3. Myo16 is thought to play a regulatory role in cell cycle progression and has been recently implicated in Schizophrenia. Class XVI myosins are characterized by an N-terminal ankyrin repeat domain and some with chitin synthase domains that arose independently from the ones in the class XVII fungal myosins. They bind protein phosphatase 1 catalytic subunits 1alpha/PPP1CA and 1gamma/PPP1CC. Human Myo16 interacts with ACOT9, ARHGAP26 and PIK3R2 and with components of the WAVE1 complex, CYFIP1 and NCKAP1. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276844 [Multi-domain]  Cd Length: 656  Bit Score: 309.05  E-value: 2.74e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYR---GKKRHEMPPHIYAISESAYRCMLQDREDQSIL 175
Cdd:cd14878    1 SSLLYEIQKRFGNNQIYTFIGDILLLVNPYKELPIYSTMVSQLYLsssGQLCSSLPPHLFSCAERAFHQLFQERRPQCFI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  176 CTGESGAGKTENTKKVIQYLAHVASSHKGRKDHNIppespkpvKHqgelerqllqANPILESFGNAKTVKNDNSSRFGKF 255
Cdd:cd14878   81 LSGERGSGKTEASKQIMKHLTCRASSSRTTFDSRF--------KH----------VNCILEAFGHAKTTLNDLSSCFIKY 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  256 IRINF-DVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGY----IPIPGQ 330
Cdd:cd14878  143 FELQFcERKKHLTGARIYTYMLEKSRLVSQPPGQSNFLIFYLLMDGLSAEEKYGLHLNNLCAHRYLNQTMredvSTAERS 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  331 QDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTDQASMPENTVAQKLCHLLGMNVMEFTRAILTPR 410
Cdd:cd14878  223 LNREKLAVLKQALNVVGFSSLEVENLFVILSAILHLGDIRFTALTEADSAFVSDLQLLEQVAGMLQVSTDELASALTTDI 302
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  411 IKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKAL---DRTKRQGASFIGILDIAGFEIFELNSFEQLCIN 487
Cdd:cd14878  303 QYFKGDMIIRRHTIQIAEFYRDLLAKSLYSRLFSFLVNTVNCCLqsqDEQKSMQTLDIGILDIFGFEEFQKNEFEQLCVN 382
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  488 YTNEKLQQLFNHTMFILEQEEYQREGIewnfidfgldlqpCIDLIERPAN-----------PPGVLALLDEECWFPKATD 556
Cdd:cd14878  383 MTNEKMHHYINEVLFLQEQTECVQEGV-------------TMETAYSPGNqtgvldfffqkPSGFLSLLDEESQMIWSVE 449
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  557 KTFVEKL---VQEQGTHSKFQKPRQ------LKDK-ADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVA 626
Cdd:cd14878  450 PNLPKKLqslLESSNTNAVYSPMKDgngnvaLKDQgTAFTVMHYAGRVMYEIVGAIEKNKDSLSQNLLFVMKTSENVVIN 529
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  627 ELWKDEIQniqracfydnitglhdppvdrivgldqvtgitetafgsayktkkgmfrTVGQLYKESLTKLMATLRNTNPNF 706
Cdd:cd14878  530 HLFQSKLV------------------------------------------------TIASQLRKSLADIIGKLQKCTPHF 561
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  707 VRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKgfmDGKQACERMIRALE 786
Cdd:cd14878  562 IHCIKPNNSKLPDTFDNFYVSAQLQYIGVLEMVKIFRYGYPVRLSFSDFLSRYKPLADTLLGE---KKKQSAEERCRLVL 638
                        730
                 ....*....|....*...
gi 45382679  787 LDPNL--YRIGQSKIFFR 802
Cdd:cd14878  639 QQCKLqgWQMGVRKVFLK 656
MYSc_Myo24A cd14937
class XXIV A myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a ...
99-802 2.94e-87

class XXIV A myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a coiled-coil region in their C-terminal tail. The function of the class XXIV myosins remain elusive. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276897  Cd Length: 637  Bit Score: 299.62  E-value: 2.94e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYseniIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14937    1 AEVLNMLALRYKKNYIYTIAEPMLISINPYQVIDVD----INEYKNKNTNELPPHVYSYAKDAMTDFINTKTNQSIIISG 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAhvasshkgrkdhnippespKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRI 258
Cdd:cd14937   77 ESGSGKTEASKLVIKYYL-------------------SGVKEDNEISNTLWDSNFILEAFGNAKTLKNNNSSRYGKYIKI 137
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  259 NFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQE 338
Cdd:cd14937  138 ELDEYQNIVSSSIEIFLLENIRVVSQEEEERGYHIFYQIFNGMSQELKNKYKIRSENEYKYIVNKNVVIPEIDDAKDFGN 217
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  339 TMEAMHIMGFsHDEILSMLKVVSSVLQFGNISFK---KERNTDQASMPENT--VAQKLCHLLGMNVMEFTRAILTPRIKV 413
Cdd:cd14937  218 LMISFDKMNM-HDMKDDLFLTLSGLLLLGNVEYQeieKGGKTNCSELDKNNleLVNEISNLLGINYENLKDCLVFTEKTI 296
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  414 GRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKrQGASFIGILDIAGFEIFELNSFEQLCINYTNEKL 493
Cdd:cd14937  297 ANQKIEIPLSVEESVSICKSISKDLYNKIFSYITKRINNFLNNNK-ELNNYIGILDIFGFEIFSKNSLEQLLINIANEEI 375
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  494 QQLFNHTMFILEQEEYQREGIEWNFIDFGLDlQPCIDLIERPANppgVLALLDEECWFPKATDKTFVEKLVQEQGTHSKF 573
Cdd:cd14937  376 HSIYLYIVYEKETELYKAEDILIESVKYTTN-ESIIDLLRGKTS---IISILEDSCLGPVKNDESIVSVYTNKFSKHEKY 451
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  574 QKPRQLKDKaDFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDeiqniqracfydnitglhdppV 653
Cdd:cd14937  452 ASTKKDINK-NFVIKHTVSDVTYTITNFISKNKDILPSNIVRLLKVSNNKLVRSLYED---------------------V 509
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  654 DRIVGLDQVTGITetafgsaYKtkkgmfrtvgqlYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCN 733
Cdd:cd14937  510 EVSESLGRKNLIT-------FK------------YLKNLNNIISYLKSTNIYFIKCIKPNENKEKNNFNQKKVFPQLFSL 570
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679  734 GVLEGIRIcRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIRAlELDPNLYRIGQSKIFFR 802
Cdd:cd14937  571 SIIETLNI-SFFFQYKYTFDVFLSYFEYLDYSTSKDSSLTDKEKVSMILQN-TVDPDLYKVGKTMVFLK 637
MYSc_Myo23 cd14884
class XXIII myosin, motor domain; These myosins are predicted to have a neck region with 1-2 ...
99-754 1.06e-77

class XXIII myosin, motor domain; These myosins are predicted to have a neck region with 1-2 IQ motifs and a single MyTH4 domain in its C-terminal tail. The lack of a FERM domain here is odd since MyTH4 domains are usually found alongside FERM domains where they bind to microtubules. At any rate these Class XXIII myosins are still proposed to function in the apicomplexan microtubule cytoskeleton. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276850 [Multi-domain]  Cd Length: 685  Bit Score: 272.94  E-value: 1.06e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMYRGKKRHE-------MPPHIYAISESAYRCMLQDRE 170
Cdd:cd14884    1 PNVLQNLKNRYLKNKIYTFHASLLLALNPYKPLKeLYDQDVMNVYLHKKSNSaasaapfPKAHIYDIANMAYKNMRGKLK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  171 DQSILCTGESGAGKTENTKKVIQYLAHVasshKGRKDHNippespkpvkhqgELERQLLQANPILESFGNAKTVKNDNSS 250
Cdd:cd14884   81 RQTIVVSGHSGSGKTENCKFLFKYFHYI----QTDSQMT-------------ERIDKLIYINNILESMSNATTIKNNNSS 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  251 RFGKFIRINFD---------VTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAG-AGEHLKSDLLLEGFNNYRFL 320
Cdd:cd14884  144 RCGRINLLIFEeventqknmFNGCFRNIKIKILLLEINRCIAHNFGERNFHVFYQVLRGlSDEDLARRNLVRNCGVYGLL 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  321 --------------------SNGYIPIPGQQDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKkerntdqa 380
Cdd:cd14884  224 npdeshqkrsvkgtlrlgsdSLDPSEEEKAKDEKNFVALLHGLHYIKYDERQINEFFDIIAGILHLGNRAYK-------- 295
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  381 smpentvaqKLCHLLGMNVMEFTRAILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQ 460
Cdd:cd14884  296 ---------AAAECLQIEEEDLENVIKYKNIRVSHEVIRTERRKENATSTRDTLIKFIYKKLFNKIIEDINRNVLKCKEK 366
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  461 GA-----------SFIGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGlDLQPCI 529
Cdd:cd14884  367 DEsdnediysineAIISILDIYGFEELSGNDFDQLCINLANEKLNNYYINNEIEKEKRIYARENIICCSDVAP-SYSDTL 445
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  530 DLIERpanppgVLALLDE-----ECWFPKATDKTFV-----EKLVQEQGTHSK-FQKPR--------QLKDKADFCIIHY 590
Cdd:cd14884  446 IFIAK------IFRRLDDitklkNQGQKKTDDHFFRyllnnERQQQLEGKVSYgFVLNHdadgtakkQNIKKNIFFIRHY 519
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  591 AGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAElwkdeiqniqracfydnitglhdppvdrivgldqvtgitetaf 670
Cdd:cd14884  520 AGLVTYRINNWIDKNSDKIETSIETLISCSSNRFLRE------------------------------------------- 556
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  671 gSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRI 750
Cdd:cd14884  557 -ANNGGNKGNFLSVSKKYIKELDNLFTQLQSTDMYYIRCFLPNAKMLPNTFKRLLVYRQLKQCGSNEMIKILNRGLSHKI 635

                 ....
gi 45382679  751 VFQE 754
Cdd:cd14884  636 PKKE 639
MYSc_Myo20 cd14881
class XX myosin, motor domain; These class 20 myosins are primarily insect myosins with such ...
100-789 3.65e-76

class XX myosin, motor domain; These class 20 myosins are primarily insect myosins with such members as Drosophila, Daphnia, and mosquitoes. These myosins contain a single IQ motif in the neck region. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276847 [Multi-domain]  Cd Length: 633  Bit Score: 266.98  E-value: 3.65e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYknlpiyseniieMYRGKKRH-------EMPPHIYAISESAYRCMLQDREDQ 172
Cdd:cd14881    2 AVMKCLQARFYAKEFFTNVGPILLSVNPY------------RDVGNPLTltstrssPLAPQLLKVVQEAVRQQSETGYPQ 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  173 SILCTGESGAGKTENTKKVIQYLAHVASSHkgrkdhnipPESpKPVKHqgelerqLLQANPILESFGNAKTVKNDNSSRF 252
Cdd:cd14881   70 AIILSGTSGSGKTYASMLLLRQLFDVAGGG---------PET-DAFKH-------LAAAFTVLRSLGSAKTATNSESSRI 132
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  253 GKFIRINFdVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFN--NYRFLSNGYIPIPGQ 330
Cdd:cd14881  133 GHFIEVQV-TDGALYRTKIHCYFLDQTRVIRPLPGEKNYHIFYQMLAGLSQEERVKLHLDGYSpaNLRYLSHGDTRQNEA 211
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  331 QDKDNFQETMEAMHIMGFshdEILSMLKVVSSVLQFGNISF--KKERNTDQASMPE-NTVAQklchLLGMNVMEFTRAiL 407
Cdd:cd14881  212 EDAARFQAWKACLGILGI---PFLDVVRVLAAVLLLGNVQFidGGGLEVDVKGETElKSVAA----LLGVSGAALFRG-L 283
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  408 TPRIK-VGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKaldrTKRQGAS--------FIGILDIAGFEIFEL 478
Cdd:cd14881  284 TTRTHnARGQLVKSVCDANMSNMTRDALAKALYCRTVATIVRRANS----LKRLGSTlgthatdgFIGILDMFGFEDPKP 359
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  479 NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNF-IDFgLDLQPCIDLIErpANPPGVLALLDEECwFPKATDK 557
Cdd:cd14881  360 SQLEHLCINLCAETMQHFYNTHIFKSSIESCRDEGIQCEVeVDY-VDNVPCIDLIS--SLRTGLLSMLDVEC-SPRGTAE 435
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  558 TFVEKLVQEQGTHSKFQKPRQLKDKAdFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHqssdkfvaelwkdeiqniQ 637
Cdd:cd14881  436 SYVAKIKVQHRQNPRLFEAKPQDDRM-FGIRHFAGRVVYDASDFLDTNRDVVPDDLVAVFY------------------K 496
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  638 RACFYDNITGLHDppvdrivgldqvtgitetafgsayktkkgmFRTvgqlykeSLTKLMATLRNTNPNFVRCIIPNHEKR 717
Cdd:cd14881  497 QNCNFGFATHTQD------------------------------FHT-------RLDNLLRTLVHARPHFVRCIRSNTTET 539
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679  718 AGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAIPKGFMDGKQACERMIR--ALELDP 789
Cdd:cd14881  540 PNHFDRGTVVRQIRSLQVLETVNLMAGGYPHRMRFKAFNARYRLLAPFRLLRRVEEKALEDCALILqfLEAQPP 613
MYSc_Myo12 cd14874
class XXXIII myosin, motor domain; Little is known about the XXXIII class of myosins. They ...
99-767 4.72e-72

class XXXIII myosin, motor domain; Little is known about the XXXIII class of myosins. They are found predominately in nematodes. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276841 [Multi-domain]  Cd Length: 628  Bit Score: 254.80  E-value: 4.72e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   99 ASVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYrgkkrhemppHIYAISESAYRCMLQDRED-QSILCT 177
Cdd:cd14874    1 AGIAQNLHERFKKGQTYTKASNVLVFVNDFNKLSIQDQLVIKKC----------HISGVAENALDRIKSMSSNaESIVFG 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  178 GESGAGKTENTKKVIQYLAHvasshkgrkdhniPPESPKPVKHQGELERqllqanpILESFGNAKTVKNDNSSRFGKFIR 257
Cdd:cd14874   71 GESGSGKSYNAFQVFKYLTS-------------QPKSKVTTKHSSAIES-------VFKSFGCAKTLKNDEATRFGCSID 130
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  258 INFDvTGYIVGANIE-TYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNF 336
Cdd:cd14874  131 LLYK-RNVLTGLNLKyTVPLEVPRVISQKPGERNFNVFYEVYHGLNDEMKAKFGIKGLQKFFYINQGNSTENIQSDVNHF 209
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  337 QETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNTD-QASMPE--NTVAQKLCHLLGMNVMEFTRAILTPRIKV 413
Cdd:cd14874  210 KHLEDALHVLGFSDDHCISIYKIISTILHIGNIYFRTKRNPNvEQDVVEigNMSEVKWVAFLLEVDFDQLVNFLLPKSED 289
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  414 GrdyvqKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQGAsfIGILDIAGFEIFELNSFEQLCINYTNEKL 493
Cdd:cd14874  290 G-----TTIDLNAALDNRDSFAMLIYEELFKWVLNRIGLHLKCPLHTGV--ISILDHYGFEKYNNNGVEEFLINSVNERI 362
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  494 QQLFNHTMFILEQEEYQREGIEWNF-IDFGLDLQPCIDLIERpaNPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSK 572
Cdd:cd14874  363 ENLFVKHSFHDQLVDYAKDGISVDYkVPNSIENGKTVELLFK--KPYGLLPLLTDECKFPKGSHESYLEHCNLNHTDRSS 440
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  573 FQKPRQlKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIQNIQracfydnitglhdpp 652
Cdd:cd14874  441 YGKARN-KERLEFGVRHCIGTTWYNVTDFFSRNKRIISLSAVQLLRSSKNPIIGLLFESYSSNTS--------------- 504
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  653 vDRIVgldqvtgitetafgsayktkkgmfrTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRC 732
Cdd:cd14874  505 -DMIV-------------------------SQAQFILRGAQEIADKINGSHAHFVRCIKSNNERQPKKFDIPLVNRQIKN 558
                        650       660       670
                 ....*....|....*....|....*....|....*
gi 45382679  733 NGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAI 767
Cdd:cd14874  559 LLLAELLSFRIKGYPVKISKTTFARQYRCLLPGDI 593
MYSc_Myo44 cd14905
class XLIV myosin, motor domain; There is little known about the function of the myosin XLIV ...
100-802 1.43e-70

class XLIV myosin, motor domain; There is little known about the function of the myosin XLIV class. Members here include cellular slime mold Polysphondylium and soil-living amoeba Dictyostelium. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276870  Cd Length: 673  Bit Score: 251.55  E-value: 1.43e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLP-IYSENIIEMYrgKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14905    2 TLINIIQARYKKEIIYTYIGPILVSVNPLRYLPfLHSQELVRNY--NQRRGLPPHLFALAAKAISDMQDFRRDQLIFIGG 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHV-ASSHKGRKDHnippespkpvkhqgelerqLLQANPILESFGNAKTVKNDNSSRFGKFIR 257
Cdd:cd14905   80 ESGSGKSENTKIIIQYLLTTdLSRSKYLRDY-------------------ILESGIILESFGHASTDSNHNSSRWGKYFE 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  258 INFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSN-GYIPIPGQQDKDNF 336
Cdd:cd14905  141 MFYSLYGEIQGAKLYSYFLDENRVTYQNKGERNFHIFYQFLKGITDEEKAAYQLGDINSYHYLNQgGSISVESIDDNRVF 220
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  337 QETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKERNtdQASMPENTVAQKLCHLLGMNVMEFTRAILTPRIKVGRD 416
Cdd:cd14905  221 DRLKMSFVFFDFPSEKIDLIFKTLSFIIILGNVTFFQKNG--KTEVKDRTLIESLSHNITFDSTKLENILISDRSMPVNE 298
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  417 YVQKAqtkeqadfavEALAKATYERLFRWLVHRINKALDRTkrQGASFIGILDIAGFEIFELNSFEQLCINYTNEKLQQL 496
Cdd:cd14905  299 AVENR----------DSLARSLYSALFHWIIDFLNSKLKPT--QYSHTLGILDLFGQESSQLNGYEQFSINFLEERLQQI 366
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  497 FNHTMFILEQEEYQREGIEW-NFIDFGlDLQPCIDLIERpanppgVLALLDEECWFPKATDKTFVEKLVQEQGTHSKF-Q 574
Cdd:cd14905  367 YLQTVLKQEQREYQTERIPWmTPISFK-DNEESVEMMEK------IINLLDQESKNINSSDQIFLEKLQNFLSRHHLFgK 439
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  575 KPRQlkdkadFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVaeLWKDEIQNIQRAC-----FYDNITGLH 649
Cdd:cd14905  440 KPNK------FGIEHYFGQFYYDVRGFIIKNRDEILQRTNVLHKNSITKYL--FSRDGVFNINATVaelnqMFDAKNTAK 511
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  650 DPPVDRIVGL--------DQVTGITETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPN--FVRCIIPNHEKRAG 719
Cdd:cd14905  512 KSPLSIVKVLlscgsnnpNNVNNPNNNSGGGGGGGNSGGGSGSGGSTYTTYSSTNKAINNSNCDfhFIRCIKPNSKKTHL 591
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  720 KLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPNAipKGFMD-GKQACERMIRALELDPNLYRIGQSK 798
Cdd:cd14905  592 TFDVKSVNEQIKSLCLLETTRIQRFGYTIHYNNKIFFDRFSFFFQNQ--RNFQNlFEKLKENDINIDSILPPPIQVGNTK 669

                 ....
gi 45382679  799 IFFR 802
Cdd:cd14905  670 IFLR 673
MYSc_Myo32 cd14893
class XXXII myosin, motor domain; Class XXXII myosins do not contain any IQ motifs, but ...
102-801 7.77e-68

class XXXII myosin, motor domain; Class XXXII myosins do not contain any IQ motifs, but possess tandem MyTH4 and FERM domains. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276858  Cd Length: 741  Bit Score: 245.27  E-value: 7.77e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  102 LHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKR----------HEMPPHIYAISESAYRCMLQDRED 171
Cdd:cd14893    4 LYTLRARYRMEQVYTWVDRVLVGVNPVTPLPIYTPDHMQAYNKSREqtplyekdtvNDAPPHVFALAQNALRCMQDAGED 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  172 QSILCTGESGAGKTENTKKVIQYLAHVASSHKGRKDhnipPESPKPVKHqgELERQLLQANPILESFGNAKTVKNDNSSR 251
Cdd:cd14893   84 QAVILLGGMGAGKSEAAKLIVQYLCEIGDETEPRPD----SEGASGVLH--PIGQQILHAFTILEAFGNAATRQNRNSSR 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  252 FGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAgEH---LKSDLLL-EGFNNYRFLSNGyIPI 327
Cdd:cd14893  158 FAKMISVEFSKHGHVIGGGFTTHYFEKSRVIDCRSHERNFHVFYQVLAGV-QHdptLRDSLEMnKCVNEFVMLKQA-DPL 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  328 PGQ--QDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISF--KKERNTDQASMPENTVAQ-KLCHL-------L 395
Cdd:cd14893  236 ATNfaLDARDYRDLMSSFSALRIRKNQRVEIVRIVAALLHLGNVDFvpDPEGGKSVGGANSTTVSDaQSCALkdpaqilL 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  396 GMNVMEFTRAILTPRIKVGRDYVQ---------KAQTKEQADFAVEALAKATYERLFRWLVHRINKAL----DRTKRQG- 461
Cdd:cd14893  316 AAKLLEVEPVVLDNYFRTRQFFSKdgnktvsslKVVTVHQARKARDTFVRSLYESLFNFLVETLNGILggifDRYEKSNi 395
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  462 ---ASFIGILDIAGFEIFE--LNSFEQLCINYTNEKLQQLF-NHTMFI----LEQEEYQREG--IEWNFIDFGLDLQPCI 529
Cdd:cd14893  396 vinSQGVHVLDMVGFENLTpsQNSFDQLCFNYWSEKVHHFYvQNTLAInfsfLEDESQQVENrlTVNSNVDITSEQEKCL 475
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  530 DLIERPanPPGVLALLDEECWFPKATDKTFVEKLVQEQGTHSKFQKPRQLKDKAD------------FCIIHYAGKVDYK 597
Cdd:cd14893  476 QLFEDK--PFGIFDLLTENCKVRLPNDEDFVNKLFSGNEAVGGLSRPNMGADTTNeylapskdwrllFIVQHHCGKVTYN 553
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  598 ADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIQNIQRAcfydnitglhdppvdriVGLDQVT--GITETAFG---- 671
Cdd:cd14893  554 GKGLSSKNMLSISSTCAAIMQSSKNAVLHAVGAAQMAAASSE-----------------KAAKQTEerGSTSSKFRksas 616
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  672 SAYKTKKGMFRTVGQLYKESlTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIV 751
Cdd:cd14893  617 SARESKNITDSAATDVYNQA-DALLHALNHTGKNFLVCIKPNETLEEGVFDSAYVMKQIRMNHLVELMQASRSIFTVHLT 695
                        730       740       750       760       770
                 ....*....|....*....|....*....|....*....|....*....|....
gi 45382679  752 FQEFRQRYeiltpnaipKGFMDGKQACERMIRALE----LDPNLYRIGQSKIFF 801
Cdd:cd14893  696 YGHFFRRY---------KNVCGHRGTLESLLRSLSaigvLEEEKFVVGKTKVYL 740
MYSc_Myo21 cd14882
class XXI myosin, motor domain; The myosins here are comprised of insects. Leishmania class ...
100-762 2.44e-60

class XXI myosin, motor domain; The myosins here are comprised of insects. Leishmania class XXI myosins do not group with them. Myo21, unlike other myosin proteins, contains UBA-like protein domains and has no structural or functional relationship with the myosins present in other organisms possessing cilia or flagella. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. They have diverse tails with IQ, WW, PX, and Tub domains. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276848  Cd Length: 642  Bit Score: 220.77  E-value: 2.44e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGE 179
Cdd:cd14882    2 NILEELRHRYLMGESYTFIGDILLSLNPNEIKQEYPQEFHAKYRCKSRSDNAPHIFSVADSAYQDMLHHEEPQHIILSGE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  180 SGAGKTENTKKVIQYLAHVASSHKGrkdhnippespkpvkhqgeLERQLLQANPILESFGNAKTVKNDNSSRFGKFIRIN 259
Cdd:cd14882   82 SYSGKTTNARLLIKHLCYLGDGNRG-------------------ATGRVESSIKAILALVNAGTPLNADSTRCILQYQLT 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  260 FDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAG--AGEHLKsDLLLEGFNNYRFLSngyIP--IPG------ 329
Cdd:cd14882  143 FGSTGKMSGAIFWMYQLEKLRVSTTDGNQSNFHIFYYFYDFieAQNRLK-EYNLKAGRNYRYLR---IPpeVPPsklkyr 218
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  330 ----QQDKDNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNISFKKerNTDQASMPENTVAQKLCHLLGMNVMEFTRA 405
Cdd:cd14882  219 rddpEGNVERYKEFEEILKDLDFNEEQLETVRKVLAAILNLGEIRFRQ--NGGYAELENTEIASRVAELLRLDEKKFMWA 296
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  406 ILTPRIKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKrqgASF-----IGILDIAGFEIFELNS 480
Cdd:cd14882  297 LTNYCLIKGGSAERRKHTTEEARDARDVLASTLYSRLVDWIINRINMKMSFPR---AVFgdkysISIHDMFGFECFHRNR 373
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  481 FEQLCINYTNEKLQQLFNHTMFI---LEQEEYQREGIEWNFIDFGLDLQPCIdlierpANPPGVLALLDEECwfPKATDK 557
Cdd:cd14882  374 LEQLMVNTLNEQMQYHYNQRIFIsemLEMEEEDIPTINLRFYDNKTAVDQLM------TKPDGLFYIIDDAS--RSCQDQ 445
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  558 TFVEKLVQEQgtHSKFQKPrqlKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKDEIQNIQ 637
Cdd:cd14882  446 NYIMDRIKEK--HSQFVKK---HSAHEFSVAHYTGRIIYDAREFADKNRDFVPPEMIETMRSSLDESVKLMFTNSQVRNM 520
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  638 RACfydnitglhdppvdrivgldqvtgitetafgsayktkKGMFRTVgqlykeSLTKLMATLRNTNP---NFVRCIIPNH 714
Cdd:cd14882  521 RTL-------------------------------------AATFRAT------SLELLKMLSIGANSggtHFVRCIRSDL 557
                        650       660       670       680
                 ....*....|....*....|....*....|....*....|....*...
gi 45382679  715 EKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEIL 762
Cdd:cd14882  558 EYKPRGFHSEVVRQQMRALAVLDTAKARQKGFSYRIPFQEFLRRYQFL 605
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
121-265 6.27e-60

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 203.35  E-value: 6.27e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  121 FCVVINPYKNLPIYSEN-IIEMYRGKKRHEMPPHIYAISESAYRCMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVA 199
Cdd:cd01363    1 VLVRVNPFKELPIYRDSkIIVFYRGFRRSESQPHVFAIADPAYQSMLDGYNNQSIFAYGESGAGKTETMKGVIPYLASVA 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679  200 SSHKGRKDHNIppeSPKPVKHQGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRINFDVTGY 265
Cdd:cd01363   81 FNGINKGETEG---WVYLTEITVTLEDQILQANPILEAFGNAKTTRNENSSRFGKFIEILLDIAGF 143
MYSc_Myo24B cd14938
class XXIV B myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a ...
100-800 6.65e-60

class XXIV B myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a coiled-coil region in their C-terminal tail. The functions of these myosins remain elusive. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276898 [Multi-domain]  Cd Length: 713  Bit Score: 220.86  E-value: 6.65e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  100 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYR-GKKRHEMPPHIYAISESAYRCMLQDREDQSILCTG 178
Cdd:cd14938    2 SVLYHLKERFKNNKFYTKMGPLLIFINPKINNNINNEETIEKYKcIDCIEDLSLNEYHVVHNALKNLNELKRNQSIIISG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  179 ESGAGKTENTKKVIQYLAHVA--SSHKGRKDHNIPPESPKPV---KHQGELERQLLQANPILESFGNAKTVKNDNSSRFG 253
Cdd:cd14938   82 ESGSGKSEIAKNIINFIAYQVkgSRRLPTNLNDQEEDNIHNEentDYQFNMSEMLKHVNVVMEAFGNAKTVKNNNSSRFS 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  254 KFIRINFDvTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLAGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDK 333
Cdd:cd14938  162 KFCTIHIE-NEEIKSFHIKKFLLDKERLINRKANENSFNIFYYIINGSSDKFKKMYFLKNIENYSMLNNEKGFEKFSDYS 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  334 DNFQETMEAMHIMGFSHDEILSMLKVVSSVLQFGNI----SFKKE----------------------RNTDQASMPENTV 387
Cdd:cd14938  241 GKILELLKSLNYIFDDDKEIDFIFSVLSALLLLGNTeivkAFRKKsllmgknqcgqninyetilselENSEDIGLDENVK 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  388 AQKL-CHLLGMNVMEFTRAILTPRIkVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKR--QGASF 464
Cdd:cd14938  321 NLLLaCKLLSFDIETFVKYFTTNYI-FNDSILIKVHNETKIQKKLENFIKTCYEELFNWIIYKINEKCTQLQNinINTNY 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  465 IGILDIAGFEIFELNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANppGVLAL 544
Cdd:cd14938  400 INVLDMAYFENSKDNSLEQLLINTTNEEIIKIKNDCLYKKRVLSYNEDGIFCEYNSENIDNEPLYNLLVGPTE--GSLFS 477
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  545 LDEECWFPKATDKTFVEKL-VQEQGTHSKF-QKPRQLKDKADFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSD 622
Cdd:cd14938  478 LLENVSTKTIFDKSNLHSSiIRKFSRNSKYiKKDDITGNKKTFVITHSCGDIIYNAENFVEKNIDILTNRFIDMVKQSEN 557
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  623 KFVAELwkdeiqniqrACFYD-NITGlhdppvdRIVGLDQVTGITET--AFGSAYKTKKGMFRTvgqLYKESLTKLMATL 699
Cdd:cd14938  558 EYMRQF----------CMFYNyDNSG-------NIVEEKRRYSIQSAlkLFKRRYDTKNQMAVS---LLRNNLTELEKLQ 617
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  700 RNTNPNFVRCIIPNHEKRA-GKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILTPnaipkgfmDGKQAC 778
Cdd:cd14938  618 ETTFCHFIVCMKPNESKRElCSFDANIVLRQVRNFSIVEASQLKVGYYPHKFTLNEFLSIFDIKNE--------DLKEKV 689
                        730       740
                 ....*....|....*....|..
gi 45382679  779 ERMIRALELDPNLYRIGQSKIF 800
Cdd:cd14938  690 EALIKSYQISNYEWMIGNNMIF 711
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
882-1714 6.60e-39

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 159.49  E-value: 6.60e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  882 EEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFA----EAEEMRARLAAKKQELEEILHD 957
Cdd:COG1196  178 ERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLaklkELRKELEELEEELSRLEEELEE 257
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  958 LESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMED 1037
Cdd:COG1196  258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1038 RIAECTSQLAEEEEKAKNLAKLKNKQEmmiTDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLA 1117
Cdd:COG1196  338 ELEERETLLEELEQLLAELEEAKEELE---EKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLE 414
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1118 KKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELED---TLDTTA 1194
Cdd:COG1196  415 RLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSleaRLDRLE 494
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1195 AQQElRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEE---------LSEQLEQAKRFKANLEKNKQGLESdnk 1265
Cdd:COG1196  495 AEQR-ASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAalgnrlqavVVENEEVAKKAIEFLKENKAGRAT--- 570
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1266 elaceVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLR------------VELAEKANKLQNELDN----VSSLLEE 1329
Cdd:COG1196  571 -----FLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEpavrfvlgdtlvVDDLEQARRLARKLRIkyriVTLDGDL 645
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1330 AEKKGI-----KFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQL 1404
Cdd:COG1196  646 VEPSGSitggsRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1405 AEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLmvdldhqrqivsnlekkqkkf 1484
Cdd:COG1196  726 AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEEL--------------------- 784
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1485 dqmlaeeKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKS 1564
Cdd:COG1196  785 -------EEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKE 857
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1565 KRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQnEEKKRMLVKQVRELEAELED--ERKQ 1642
Cdd:COG1196  858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL-RERLEELEAKLERLEVELPEleEELE 936
                        810       820       830       840       850       860       870
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 45382679 1643 RALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLK 1714
Cdd:COG1196  937 EEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKR 1008
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1049-1889 2.69e-38

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 157.57  E-value: 2.69e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1049 EEEKAKNLAKLKNKQE------MMITDLEERLKKEEKTRQELEKAKrKLDGETTDLQDQIA-----ELQAQIEELKIQLA 1117
Cdd:COG1196  171 KERKEEAERKLERTEEnlerleDLLEELEKQLEKLERQAEKAERYQ-ELKAELRELELALLlaklkELRKELEELEEELS 249
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1118 KKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQ 1197
Cdd:COG1196  250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELK 329
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1198 ELRTKREQEVAELKKAIEEETKNhEAQIQEIRQRHATALEELSEQLEQAKrfkANLEKNKQGLESDNKELACEVKVLQQV 1277
Cdd:COG1196  330 EKIEALKEELEERETLLEELEQL-LAELEEAKEELEEKLSALLEELEELF---EALREELAELEAELAEIRNELEELKRE 405
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1278 KAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQE 1357
Cdd:COG1196  406 IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSS 485
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1358 ETRQKLNLSSRIRQLEEEKNnlqeqqeeEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEG------LEENKKKLLKD 1431
Cdd:COG1196  486 LEARLDRLEAEQRASQGVRA--------VLEALESGLPGVYGPVAELIKVKEKYETALEAALGnrlqavVVENEEVAKKA 557
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1432 MESLSQRLEEKAMaYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKnisarYAEERDRAEAEARE 1511
Cdd:COG1196  558 IEFLKENKAGRAT-FLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTL-----VVDDLEQARRLARK 631
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1512 KETKALSLARA------------LEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQL 1579
Cdd:COG1196  632 LRIKYRIVTLDgdlvepsgsitgGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQL 711
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1580 EELEDELQATEDAKLRLEvnmqamkaQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKD 1659
Cdd:COG1196  712 EELERQLEELKRELAALE--------EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1660 LEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQ 1739
Cdd:COG1196  784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1740 ERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSAAQK--SENA 1817
Cdd:COG1196  864 ELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEeyEDTL 943
                        810       820       830       840       850       860       870
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 45382679 1818 RQQLERQNKELKAKLQELeGSVKSKFKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLKEVFMQV 1889
Cdd:COG1196  944 ETELEREIERLEEEIEAL-GPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKET 1014
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1075-1912 3.48e-38

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 157.18  E-value: 3.48e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1075 KKEEKTRQELEKAKRKLDGettdLQDQIAELQAQIEELKIQLAKKEE--ELQAALargdeEAVQKNNALKVIRELQAQIA 1152
Cdd:COG1196  172 ERKEEAERKLERTEENLER----LEDLLEELEKQLEKLERQAEKAERyqELKAEL-----RELELALLLAKLKELRKELE 242
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1153 ELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTldttAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRH 1232
Cdd:COG1196  243 ELEEELSRLEEELEELQEELEEAEKEIEELKSELEEL----REELEELQEELLELKEEIEELEGEISLLRERLEELENEL 318
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1233 ATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEK 1312
Cdd:COG1196  319 EELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1313 ANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKN 1392
Cdd:COG1196  399 LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQR 478
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1393 LEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAM--------------------------AY 1446
Cdd:COG1196  479 LEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKyetaleaalgnrlqavvveneevakkAI 558
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1447 DKLEKTK---------NRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLaeeKNISARY--AEERDRAEAEAREKETK 1515
Cdd:COG1196  559 EFLKENKagratflplDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAV---RFVLGDTlvVDDLEQARRLARKLRIK 635
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1516 ALSLARaleealeakeeferqnKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLR 1595
Cdd:COG1196  636 YRIVTL----------------DGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRS 699
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1596 LEVNmqamkaqfERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRalavaakKKMEMDLKDLEGQIEAANKARDEAI 1675
Cdd:COG1196  700 LEDL--------LEELRRQLEELERQLEELKRELAALEEELEQLQSRL-------EELEEELEELEEELEELQERLEELE 764
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1676 KQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGK 1755
Cdd:COG1196  765 EELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKL 844
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1756 SALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQEL 1835
Cdd:COG1196  845 DELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERL 924
                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1836 EG-------SVKSKFKATIST-LEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLKEVFMQVEDERRHADQYKEQMEKAN 1907
Cdd:COG1196  925 EVelpeleeELEEEYEDTLETeLEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELD 1004

                 ....*
gi 45382679 1908 ARMKQ 1912
Cdd:COG1196 1005 KEKRE 1009
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1047-1892 1.81e-35

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 148.28  E-value: 1.81e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1047 AEEEEKAKNL-AKLKNKQ-EMMITDLEERLKKEEKTRQELEKAKRKLDgettDLQDQIAELQAQIEELKIQLAKKEEELQ 1124
Cdd:TIGR02168  209 AEKAERYKELkAELRELElALLVLRLEELREELEELQEELKEAEEELE----ELTAELQELEEKLEELRLEVSELEEEIE 284
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1125 AALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKRE 1204
Cdd:TIGR02168  285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1205 QEVAELKKAIEEETKNHEAQIQEIRQRHATaLEELSEQLEQAKRFKANLEKNKQGLESDNkelacevkvlqqvkaeSEHK 1284
Cdd:TIGR02168  365 AELEELESRLEELEEQLETLRSKVAQLELQ-IASLNNEIERLEARLERLEDRRERLQQEI----------------EELL 427
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1285 RKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEetrqKLN 1364
Cdd:TIGR02168  428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN----LEG 503
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1365 LSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVdddlgtiegLEENKKKLLKDMESLSQRLEEKAM 1444
Cdd:TIGR02168  504 FSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAV---------VVENLNAAKKAIAFLKQNELGRVT 574
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1445 AYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAeekNISARYAEERDRAEAEAREKETKAL------- 1517
Cdd:TIGR02168  575 FLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALS---YLLGGVLVVDDLDNALELAKKLRPGyrivtld 651
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1518 --------SLARALEEALEAKEEFERQNKQLRADMEdlmsskddvgknvhELEKSKRTLEQQVEEMRTQLEELEDELQAT 1589
Cdd:TIGR02168  652 gdlvrpggVITGGSAKTNSSILERRREIEELEEKIE--------------ELEEKIAELEKALAELRKELEELEEELEQL 717
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1590 EDAKLRLEVNMQAMKAQFERdLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANK 1669
Cdd:TIGR02168  718 RKELEELSRQISALRKDLAR-LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1670 ARDEAIKQLRKLQAQ--------------MKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARR 1735
Cdd:TIGR02168  797 ELKALREALDELRAEltllneeaanlrerLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1736 HAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSA----- 1810
Cdd:TIGR02168  877 ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLtleea 956
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1811 ---AQKSENARQQLERQNKELKAKLQELeGSVK----SKFKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLK 1883
Cdd:TIGR02168  957 ealENKIEDDEEEARRRLKRLENKIKEL-GPVNlaaiEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFK 1035

                   ....*....
gi 45382679   1884 EVFMQVEDE 1892
Cdd:TIGR02168 1036 DTFDQVNEN 1044
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1151-1866 2.32e-34

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 144.81  E-value: 2.32e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1151 IAELQEDLESEKASRNKAEKQKrDLSEELEALKTELEdTLDTTAAQQELRTKREQEvaelkkaieeetknheAQIQEIRQ 1230
Cdd:TIGR02168  195 LNELERQLKSLERQAEKAERYK-ELKAELRELELALL-VLRLEELREELEELQEEL----------------KEAEEELE 256
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1231 RHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELA 1310
Cdd:TIGR02168  257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1311 EKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEAR 1390
Cdd:TIGR02168  337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1391 KNLEKQMLALQAQLAEAKKK-VDDDLGTIEGLEENKKKLLKDM----ESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMV 1465
Cdd:TIGR02168  417 ERLQQEIEELLKKLEEAELKeLQAELEELEEELEELQEELERLeealEELREELEEAEQALDAAERELAQLQARLDSLER 496
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1466 DLDHQRQI---VSNLEKKQKKF--------DQMLAEEKNISARYAEERDRAEAEAREKETKAL----SLARALEEALEAK 1530
Cdd:TIGR02168  497 LQENLEGFsegVKALLKNQSGLsgilgvlsELISVDEGYEAAIEAALGGRLQAVVVENLNAAKkaiaFLKQNELGRVTFL 576
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1531 EEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKL---------------- 1594
Cdd:TIGR02168  577 PLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKlrpgyrivtldgdlvr 656
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1595 --------RLEVNMQAMKAQFE-RDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIE 1665
Cdd:TIGR02168  657 pggvitggSAKTNSSILERRREiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1666 AANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELA 1745
Cdd:TIGR02168  737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1746 DEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGE--------------RSAA 1811
Cdd:TIGR02168  817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALlnerasleealallRSEL 896
                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 45382679   1812 QKSENARQQLERQNKELKAKLQELEGSVkSKFKATISTLEAKIAQLEEQLEQEAK 1866
Cdd:TIGR02168  897 EELSEELRELESKRSELRRELEELREKL-AQLELRLEGLEVRIDNLQERLSEEYS 950
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1008-1889 5.04e-33

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 140.20  E-value: 5.04e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1008 EAKIKKMEEEIllleDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEmmitDLEERLKKEEKtrQELEKA 1087
Cdd:TIGR02169  169 DRKKEKALEEL----EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKR----EYEGYELLKEK--EALERQ 238
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1088 KRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKV-IRELQAQIAELQEDLESEKASRN 1166
Cdd:TIGR02169  239 KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEkIGELEAEIASLERSIAEKERELE 318
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1167 KAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEEtknhEAQIQEIRQRHATALEELS---EQL 1243
Cdd:TIGR02169  319 DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL----RAELEEVDKEFAETRDELKdyrEKL 394
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1244 EQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNV 1323
Cdd:TIGR02169  395 EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1324 SSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRI-------RQLEEEKNNLQEQQEEEEEARKN---L 1393
Cdd:TIGR02169  475 KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIqgvhgtvAQLGSVGERYATAIEVAAGNRLNnvvV 554
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1394 EKQMLALQA-QLAEAKKkvdddLGTIEGLEENKkklLKDMESLSQRLEEKA---MAYDKLE---KTKNRLQQELDDLMV- 1465
Cdd:TIGR02169  555 EDDAVAKEAiELLKRRK-----AGRATFLPLNK---MRDERRDLSILSEDGvigFAVDLVEfdpKYEPAFKYVFGDTLVv 626
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1466 -DLDHQRQIVSN----------LEKKQKKFDQMLAEEKNISaRYAEERDRAEAEAREKEtkalSLARALEEALEAKEEFE 1534
Cdd:TIGR02169  627 eDIEAARRLMGKyrmvtlegelFEKSGAMTGGSRAPRGGIL-FSRSEPAELQRLRERLE----GLKRELSSLQSELRRIE 701
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1535 RQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFErdlQAR 1614
Cdd:TIGR02169  702 NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLH---KLE 778
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1615 DEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEE 1694
Cdd:TIGR02169  779 EALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1695 ARASRDEIFAQSKESEKKLKGLEAEILQLQEEfaaserarrhaeqeRDELADEIansasgkSALLDEKRRLEARIAQLEE 1774
Cdd:TIGR02169  859 LNGKKEELEEELEELEAALRDLESRLGDLKKE--------------RDELEAQL-------RELERKIEELEAQIEKKRK 917
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1775 ELEEEQSNMELLNERfrkttlqvdtlNSELAGERSAAQKSENARQQLERQNKELKAKLQELE--GSVKSKFKATISTLEA 1852
Cdd:TIGR02169  918 RLSELKAKLEALEEE-----------LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRalEPVNMLAIQEYEEVLK 986
                          890       900       910
                   ....*....|....*....|....*....|....*..
gi 45382679   1853 KIAQLEEQLEQEAKERAAANKLVRRTEKKLKEVFMQV 1889
Cdd:TIGR02169  987 RLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1177-1965 8.69e-32

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 136.38  E-value: 8.69e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1177 EELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIE--EETKNHEAQIQEIRqrHATALEELSEQLEQAKRFKANLE 1254
Cdd:COG1196  172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEkaERYQELKAELRELE--LALLLAKLKELRKELEELEEELS 249
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1255 KNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKvtegERLRVELAEKANKLQNELDNVSSLLEEAEKKG 1334
Cdd:COG1196  250 RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL----KEEIEELEGEISLLRERLEELENELEELEERL 325
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1335 IKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLqeqqeeeeeaRKNLEKQMLALQAQLAEAKKKVDDD 1414
Cdd:COG1196  326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSAL----------LEELEELFEALREELAELEAELAEI 395
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1415 LGTIEGLEENkkkllkdMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNI 1494
Cdd:COG1196  396 RNELEELKRE-------IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERE 468
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1495 SARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQL---RADMEDLMSSKDDVGKNV---------HELE 1562
Cdd:COG1196  469 LAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLpgvYGPVAELIKVKEKYETALeaalgnrlqAVVV 548
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1563 KSKRTLEQQVEEMRTQ------------LEELEDELQATEDAKLRLEVNMQAMKAQFERDLQAR---------DEQNEEK 1621
Cdd:COG1196  549 ENEEVAKKAIEFLKENkagratflpldrIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVlgdtlvvddLEQARRL 628
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1622 KRMLVKQVRELEAELEDERKQRALAVAAKKK-----MEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEAR 1696
Cdd:COG1196  629 ARKLRIKYRIVTLDGDLVEPSGSITGGSRNKrsslaQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR 708
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1697 ASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEEL 1776
Cdd:COG1196  709 RQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR 788
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1777 EEEQSNMELLNERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEgsvkskfkATISTLEAKIAQ 1856
Cdd:COG1196  789 QALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE--------EELEELEKELEE 860
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1857 LEEQLEQEAKERAAANKLVRRTEKKLKEVFMQVEDERRHADQYKEQMEKANARMKQLKRQLeeaEEEATRANASRRKLQR 1936
Cdd:COG1196  861 LKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKL---ERLEVELPELEEELEE 937
                        810       820
                 ....*....|....*....|....*....
gi 45382679 1937 ELDDATEanEGLSREVSTLKNRLRRGGPI 1965
Cdd:COG1196  938 EYEDTLE--TELEREIERLEEEIEALGPV 964
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1216-1965 8.99e-31

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 132.87  E-value: 8.99e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1216 EETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKA--NLEKNKQG--LESDNKELACEVKVLQQVKAESEHKRKKLDAQ 1291
Cdd:TIGR02168  182 ERTRENLDRLEDILNELERQLKSLERQAEKAERYKElkAELRELELalLVLRLEELREELEELQEELKEAEEELEELTAE 261
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1292 VQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQ 1371
Cdd:TIGR02168  262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1372 LEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEkamaydkLEK 1451
Cdd:TIGR02168  342 LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER-------LED 414
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1452 TKNRLQQElddlmvdldhQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKE 1531
Cdd:TIGR02168  415 RRERLQQE----------IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1532 EFERQNKqlrADMEDLMSSKDDVGKNVHELEKSKRTLEQQV----------EEMRTQLEE-LEDELQA-----TEDAKLR 1595
Cdd:TIGR02168  485 AQLQARL---DSLERLQENLEGFSEGVKALLKNQSGLSGILgvlselisvdEGYEAAIEAaLGGRLQAvvvenLNAAKKA 561
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1596 LE---------VNMQAMKAQFERDLQARDEQNEEKKRM-------LVKQVRELEAELED--------ERKQRALAVAAKK 1651
Cdd:TIGR02168  562 IAflkqnelgrVTFLPLDSIKGTEIQGNDREILKNIEGflgvakdLVKFDPKLRKALSYllggvlvvDDLDNALELAKKL 641
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1652 KMEMDLKDLEGQ-------------------------IEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQS 1706
Cdd:TIGR02168  642 RPGYRIVTLDGDlvrpggvitggsaktnssilerrreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL 721
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1707 KESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELL 1786
Cdd:TIGR02168  722 EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1787 NERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEGSVKSkFKATISTLEAKIAQLEEQLEQEAK 1866
Cdd:TIGR02168  802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES-LAAEIEELEELIEELESELEALLN 880
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1867 ERAAANKLVRRTEKKLKEVFMQVEDERRHADQYKEQMEKANARMKQLKRQLEEAEEEATRANAS-RRKLQRELDDA---- 1941
Cdd:TIGR02168  881 ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAeale 960
                          810       820
                   ....*....|....*....|....*..
gi 45382679   1942 ---TEANEGLSREVSTLKNRLRRGGPI 1965
Cdd:TIGR02168  961 nkiEDDEEEARRRLKRLENKIKELGPV 987
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
880-1654 1.43e-29

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 129.02  E-value: 1.43e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    880 RQEEELQakdeeLMKVKEKQTKVEAELEEMERKhQQLLEEKNILAEQLQaetELFAEAEEMRARLAAKK-QELEEILHDL 958
Cdd:TIGR02168  174 RKETERK-----LERTRENLDRLEDILNELERQ-LKSLERQAEKAERYK---ELKAELRELELALLVLRlEELREELEEL 244
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    959 ESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDR 1038
Cdd:TIGR02168  245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1039 IAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAK 1118
Cdd:TIGR02168  325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1119 KEEELQAALARGDE-----EAVQKNNALKVIRELQAQIAELQ---EDLESEKASRNKAEKQKRDLSEELEALKTELEDTL 1190
Cdd:TIGR02168  405 LEARLERLEDRRERlqqeiEELLKKLEEAELKELQAELEELEeelEELQEELERLEEALEELREELEEAEQALDAAEREL 484
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1191 DTTAAQQELRTKREQEVAELKKAIEEETKNHE---------AQIQEIRQRHATALEE---------LSEQLEQAKRFKAN 1252
Cdd:TIGR02168  485 AQLQARLDSLERLQENLEGFSEGVKALLKNQSglsgilgvlSELISVDEGYEAAIEAalggrlqavVVENLNAAKKAIAF 564
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1253 LEKNKQG--------------LESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKV------TEGERLRVELAE- 1311
Cdd:TIGR02168  565 LKQNELGrvtflpldsikgteIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvddlDNALELAKKLRPg 644
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1312 -------------------KANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQL 1372
Cdd:TIGR02168  645 yrivtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1373 EEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKT 1452
Cdd:TIGR02168  725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1453 KNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEE 1532
Cdd:TIGR02168  805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1533 FERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQ-----ATEDAKLRLEVNMQAMKAQF 1607
Cdd:TIGR02168  885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDnlqerLSEEYSLTLEEAEALENKIE 964
                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679   1608 ERDLQARDEQNEEKKR---------MLVKQVRELEAELEDERKQRALAVAAKKKME 1654
Cdd:TIGR02168  965 DDEEEARRRLKRLENKikelgpvnlAAIEEYEELKERYDFLTAQKEDLTEAKETLE 1020
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
875-1750 1.82e-28

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 125.55  E-value: 1.82e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    875 LLQVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFaeaeemrarlaakkQELEEI 954
Cdd:TIGR02168  231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL--------------YALANE 296
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    955 LHDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQldeeegaRQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKL 1034
Cdd:TIGR02168  297 ISRLEQQKQILRERLANLERQLEELEAQLEELESK-------LDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1035 MEDRIAECtsqlaeeeekaknlaklknkqemmitdleerlkkeektRQELEKAKRKLDgettDLQDQIAELQAQIEELKI 1114
Cdd:TIGR02168  370 LESRLEEL--------------------------------------EEQLETLRSKVA----QLELQIASLNNEIERLEA 407
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1115 QLakkeEELQAALARGDEEAVQKNNALKvirelQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEdtldttA 1194
Cdd:TIGR02168  408 RL----ERLEDRRERLQQEIEELLKKLE-----EAELKELQAELEELEEELEELQEELERLEEALEELREELE------E 472
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1195 AQQELRTKREQevaelkkaiEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNK-ELACE--- 1270
Cdd:TIGR02168  473 AEQALDAAERE---------LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyEAAIEaal 543
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1271 --------VKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEK--KGIKFAKD 1340
Cdd:TIGR02168  544 ggrlqavvVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrKALSYLLG 623
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1341 AASLESQLQDTQELlqeetRQKLNLSSRIRQLEEEK-----------NNLQEQQEEEEEARKNLEKQMLALQAQLAEAKK 1409
Cdd:TIGR02168  624 GVLVVDDLDNALEL-----AKKLRPGYRIVTLDGDLvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1410 KVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDL-DHQRQIVSNLEKKQKKFDQML 1488
Cdd:TIGR02168  699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELtELEAEIEELEERLEEAEEELA 778
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1489 AEEKNIsaryaeERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRadMEDLMSSKDDVGKNVHELEKSKRTL 1568
Cdd:TIGR02168  779 EAEAEI------EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER--LESLERRIAATERRLEDLEEQIEEL 850
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1569 EQQVEEMRTQLEELEDELQATEDAklrLEVNMQAMKAQFERDLQARDEQNEekkrmLVKQVRELEAELEDERKQRALAVA 1648
Cdd:TIGR02168  851 SEDIESLAAEIEELEELIEELESE---LEALLNERASLEEALALLRSELEE-----LSEELRELESKRSELRRELEELRE 922
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1649 AKKKMEMDLKDLEGQIEaankardeaikqlRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQL----- 1723
Cdd:TIGR02168  923 KLAQLELRLEGLEVRID-------------NLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgpvnl 989
                          890       900
                   ....*....|....*....|....*....
gi 45382679   1724 --QEEFAASERARRHAEQERDELADEIAN 1750
Cdd:TIGR02168  990 aaIEEYEELKERYDFLTAQKEDLTEAKET 1018
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
877-1575 2.30e-27

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 121.70  E-value: 2.30e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    877 QVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILH 956
Cdd:TIGR02168  296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    957 DLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKK------------MEEEILLLEDQ 1024
Cdd:TIGR02168  376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaelkelqaeleeLEEELEELQEE 455
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1025 NSKFLKEKKLMEDRIAECTSQLAEEEEKaknLAKLKNKQEMMiTDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQI-- 1102
Cdd:TIGR02168  456 LERLEEALEELREELEEAEQALDAAERE---LAQLQARLDSL-ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIsv 531
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1103 -AELQAQIEelkiqlAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQE----DLESEKASRNKAEKQKRDLSE 1177
Cdd:TIGR02168  532 dEGYEAAIE------AALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSikgtEIQGNDREILKNIEGFLGVAK 605
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1178 ELEALKTELEDTLD------------TTAAQQELRTKREQEVAELKK-------AIEEETKNHEAQIQEIRQRhataLEE 1238
Cdd:TIGR02168  606 DLVKFDPKLRKALSyllggvlvvddlDNALELAKKLRPGYRIVTLDGdlvrpggVITGGSAKTNSSILERRRE----IEE 681
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1239 LSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQN 1318
Cdd:TIGR02168  682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1319 ELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQML 1398
Cdd:TIGR02168  762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1399 ALQAQLAEAKKKVDDDLGTIEGLEENK-------KKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQR 1471
Cdd:TIGR02168  842 DLEEQIEELSEDIESLAAEIEELEELIeeleselEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1472 QIVSNLEKKQKKFDQMLAE-EKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSS 1550
Cdd:TIGR02168  922 EKLAQLELRLEGLEVRIDNlQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKER 1001
                          730       740
                   ....*....|....*....|....*
gi 45382679   1551 KDDVGKNVHELEKSKRTLEQQVEEM 1575
Cdd:TIGR02168 1002 YDFLTAQKEDLTEAKETLEEAIEEI 1026
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
890-1771 4.67e-27

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 120.94  E-value: 4.67e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    890 EELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEmrarlAAKKQELEEILHDLEsrVEEEEERN 969
Cdd:TIGR02169  160 DEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREK-----AERYQALLKEKREYE--GYELLKEK 232
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    970 QILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEIllledqnskflkeKKLMEDRIAECTSQLAEE 1049
Cdd:TIGR02169  233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI-------------KDLGEEEQLRVKEKIGEL 299
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1050 EEKAKNLaklknkqEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALAR 1129
Cdd:TIGR02169  300 EAEIASL-------ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE 372
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1130 GDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAE 1209
Cdd:TIGR02169  373 LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1210 LKKAIEEETKNHEAQIQEIRQRHATaLEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLqqvkaesEHKRKKLD 1289
Cdd:TIGR02169  453 QEWKLEQLAADLSKYEQELYDLKEE-YDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVL-------KASIQGVH 524
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1290 AQVQELtAKVTEGERLRVELAekankLQNELDNVSSLLEEAEKKGIKFAKdaaslESQLQDTQELLQEETRQKLNLSSRI 1369
Cdd:TIGR02169  525 GTVAQL-GSVGERYATAIEVA-----AGNRLNNVVVEDDAVAKEAIELLK-----RRKAGRATFLPLNKMRDERRDLSIL 593
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1370 R------------QLEEEKNNLQEQQEEEEEARKNLEK--------QMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLL 1429
Cdd:TIGR02169  594 SedgvigfavdlvEFDPKYEPAFKYVFGDTLVVEDIEAarrlmgkyRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEP 673
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1430 KDMESLSQRLEEkamaydkLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKK----QKKFDQMLAEEKNISARYAEERDRA 1505
Cdd:TIGR02169  674 AELQRLRERLEG-------LKRELSSLQSELRRIENRLDELSQELSDASRKigeiEKEIEQLEQEEEKLKERLEELEEDL 746
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1506 EAEAREKETKALSLARaleeALEAKEEFERQNKQLRADMEDLMSSKDDVGknVHELEKSKRTLEQQVEEMRTQLEELEDE 1585
Cdd:TIGR02169  747 SSLEQEIENVKSELKE----LEARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQAELSKLEEEVSRIEARLREIEQK 820
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1586 LQATEDAKLRLEVNMQAMKAQfERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIE 1665
Cdd:TIGR02169  821 LNRLTLEKEYLEKEIQELQEQ-RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1666 AANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKE------SEKKLKGLEAEILQLQEEFAASERARRHAEQ 1739
Cdd:TIGR02169  900 ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEdeeipeEELSLEDVQAELQRVEEEIRALEPVNMLAIQ 979
                          890       900       910
                   ....*....|....*....|....*....|..
gi 45382679   1740 ERDELADEIANSASGKSALLDEKRRLEARIAQ 1771
Cdd:TIGR02169  980 EYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1128-1948 3.37e-26

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 117.86  E-value: 3.37e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1128 ARGDEEAVQKNnalkvIRELQAQIAELQEDLESEKASRNKAEKQKrDLSEELEalktELEDTLdTTAAQQELRTKREQEV 1207
Cdd:TIGR02169  175 ALEELEEVEEN-----IERLDLIIDEKRQQLERLRREREKAERYQ-ALLKEKR----EYEGYE-LLKEKEALERQKEAIE 243
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1208 AELKkAIEEETKNHEAQIQEIRQRHATALEELSEQleqAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKK 1287
Cdd:TIGR02169  244 RQLA-SLEEELEKLTEEISELEKRLEEIEQLLEEL---NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELED 319
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1288 LDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSS 1367
Cdd:TIGR02169  320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1368 RIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYD 1447
Cdd:TIGR02169  400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1448 KLEKTKNRLQQELDdlmvDLDHQRQIVSNLEKKQKKFDQMLaeEKNISARYAEERDRAEAEarEKETKALSLAraleeal 1527
Cdd:TIGR02169  480 RVEKELSKLQRELA----EAEAQARASEERVRGGRAVEEVL--KASIQGVHGTVAQLGSVG--ERYATAIEVA------- 544
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1528 eakeeferqnkqLRADMEDLMSSKDDVGKNVHELEKSK---RTLEQQVEEMRTQLEELEdelQATEDAKLRLEVNMQAMK 1604
Cdd:TIGR02169  545 ------------AGNRLNNVVVEDDAVAKEAIELLKRRkagRATFLPLNKMRDERRDLS---ILSEDGVIGFAVDLVEFD 609
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1605 AQFERDLQ--ARDE---QNEEKKRMLVKQVR--ELEAELEDE--------RKQRALAVAAKKKMEmDLKDLEGQIEAANK 1669
Cdd:TIGR02169  610 PKYEPAFKyvFGDTlvvEDIEAARRLMGKYRmvTLEGELFEKsgamtggsRAPRGGILFSRSEPA-ELQRLRERLEGLKR 688
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1670 ARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIA 1749
Cdd:TIGR02169  689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIE 768
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1750 NSASGKSALLDEKRRLEARIAQLEEELEEEQsnMELLNERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELK 1829
Cdd:TIGR02169  769 ELEEDLHKLEEALNDLEARLSHSRIPEIQAE--LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK 846
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1830 AKLQELEGSV------KSKFKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLKEVFMQVEDERRHADQYKEQM 1903
Cdd:TIGR02169  847 EQIKSIEKEIenlngkKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926
                          810       820       830       840
                   ....*....|....*....|....*....|....*....|....*
gi 45382679   1904 EKANARMKQLKRqLEEAEEEATRANASRRKLQRELDDATEANEGL 1948
Cdd:TIGR02169  927 EALEEELSEIED-PKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
880-1609 4.94e-26

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 117.51  E-value: 4.94e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  880 RQEEELQAKDEELM-----KVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEI 954
Cdd:COG1196  217 ELKAELRELELALLlaklkELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEE 296
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  955 LHDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKkl 1034
Cdd:COG1196  297 IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL-- 374
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1035 mEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKI 1114
Cdd:COG1196  375 -EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEE 453
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1115 QLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTEL-------- 1186
Cdd:COG1196  454 QLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIkvkekyet 533
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1187 ---------------EDTLDTTAAQQELRTKREQEVA---------------------------------ELKKAIE--- 1215
Cdd:COG1196  534 aleaalgnrlqavvvENEEVAKKAIEFLKENKAGRATflpldrikplrslksdaapgflglasdlidfdpKYEPAVRfvl 613
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1216 --------EETKNHEAQIQEIRQR--------------------HATALEELSEQLEQAKRFKANLEKNKQGLESDNKEL 1267
Cdd:COG1196  614 gdtlvvddLEQARRLARKLRIKYRivtldgdlvepsgsitggsrNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSL 693
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1268 ACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQ 1347
Cdd:COG1196  694 KNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA 773
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1348 LQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKvdddlgtIEGLEENKKK 1427
Cdd:COG1196  774 LAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE-------IEELEEKLDE 846
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1428 LLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLmvdldhqRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEA 1507
Cdd:COG1196  847 LEEELEELEKELEELKEELEELEAEKEELEDELKEL-------EEEKEELEEELRELESELAELKEEIEKLRERLEELEA 919
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1508 EAREKETKALSLARALEEALEAKEEFERQNK--QLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDE 1585
Cdd:COG1196  920 KLERLEVELPELEEELEEEYEDTLETELEREieRLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEV 999
                        810       820
                 ....*....|....*....|....*
gi 45382679 1586 LQA-TEDAKLRLEVNMQAMKAQFER 1609
Cdd:COG1196 1000 IEElDKEKRERFKETFDKINENFSE 1024
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
875-1737 7.79e-26

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 116.71  E-value: 7.79e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    875 LLQVTRQEEELQAKDEElmkVKEKQTKVEAELEEMERkHQQLLEEKNILA--EQLQAETELFAEAEEMRARLAAKKQELE 952
Cdd:TIGR02169  179 LEEVEENIERLDLIIDE---KRQQLERLRREREKAER-YQALLKEKREYEgyELLKEKEALERQKEAIERQLASLEEELE 254
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    953 EILHDLESRVEEEEERNQILQNEKKKMqghiqdleEQLDEEEGARQKLQLEKVTAEakIKKMEEEILLLEDQNSKFLKEK 1032
Cdd:TIGR02169  255 KLTEEISELEKRLEEIEQLLEELNKKI--------KDLGEEEQLRVKEKIGELEAE--IASLERSIAEKERELEDAEERL 324
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1033 KLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEEL 1112
Cdd:TIGR02169  325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1113 KIQLAKKEEELQaalaRGDEEAVQKNNALKVIRE-----------LQAQIAELQEDLESEKASRNKAEKQKRDLSEELEA 1181
Cdd:TIGR02169  405 KRELDRLQEELQ----RLSEELADLNAAIAGIEAkineleeekedKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR 480
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1182 LKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHE------AQIQEIRQRHATALEELS--------------- 1240
Cdd:TIGR02169  481 VEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQgvhgtvAQLGSVGERYATAIEVAAgnrlnnvvveddava 560
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1241 -EQLEQAKRFKAN----LEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELtakvteGERLRVELAEKANK 1315
Cdd:TIGR02169  561 kEAIELLKRRKAGratfLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVF------GDTLVVEDIEAARR 634
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1316 LQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEEtrqklNLSSRIRQLEEEKNNLQEQqeeeeeaRKNLEK 1395
Cdd:TIGR02169  635 LMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQ-----RLRERLEGLKRELSSLQSE-------LRRIEN 702
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1396 QMLALQAQLAEAKKKvdddlgtIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVS 1475
Cdd:TIGR02169  703 RLDELSQELSDASRK-------IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLH 775
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1476 NLEKKQKKFDQMLAEEKNISARyaEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVG 1555
Cdd:TIGR02169  776 KLEEALNDLEARLSHSRIPEIQ--AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1556 KNVHELEKSKRTLEQQVEEMRTQLEELEDELQatedaklrlevnmqamkaqferDLQARDEQNEEKKRMLVKQVRELEAE 1635
Cdd:TIGR02169  854 KEIENLNGKKEELEEELEELEAALRDLESRLG----------------------DLKKERDELEAQLRELERKIEELEAQ 911
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1636 LEDERKQRALAVAAKKKMEMDLKDLEGQIeAANKARDEAIKQLRKLQAQMKDYQRELEE-------ARASRDEIFAQSKE 1708
Cdd:TIGR02169  912 IEKKRKRLSELKAKLEALEEELSEIEDPK-GEDEEIPEEELSLEDVQAELQRVEEEIRAlepvnmlAIQEYEEVLKRLDE 990
                          890       900
                   ....*....|....*....|....*....
gi 45382679   1709 SEKKLKGLEAEILQLQEEFAASERARRHA 1737
Cdd:TIGR02169  991 LKEKRAKLEEERKAILERIEEYEKKKREV 1019
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1281-1961 1.65e-24

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 112.50  E-value: 1.65e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1281 SEHKRKKLDAQvQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETR 1360
Cdd:COG1196  168 SKYKERKEEAE-RKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEE 246
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1361 QKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLE 1440
Cdd:COG1196  247 ELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLE 326
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1441 EKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQmlaEEKNISARYAEERDRAEAEAREKETKALSLA 1520
Cdd:COG1196  327 ELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLE---ELEELFEALREELAELEAELAEIRNELEELK 403
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1521 RALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNM 1600
Cdd:COG1196  404 REIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKEL 483
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1601 QAMKAQFERdLQARDEQNEEKKRMLVKQVRELE------AEL--EDERKQRALAVAAKKKME----MDLKDLEGQIEAAN 1668
Cdd:COG1196  484 SSLEARLDR-LEAEQRASQGVRAVLEALESGLPgvygpvAELikVKEKYETALEAALGNRLQavvvENEEVAKKAIEFLK 562
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1669 KAR--------DEAIKQLRKLQAQMK-----------DYQRELEEA--RASRDEIFAQSKESEKKL---KGLEAEILQLQ 1724
Cdd:COG1196  563 ENKagratflpLDRIKPLRSLKSDAApgflglasdliDFDPKYEPAvrFVLGDTLVVDDLEQARRLarkLRIKYRIVTLD 642
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1725 EEF----------AASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQleeeleeeqsnmelLNERFRKTT 1794
Cdd:COG1196  643 GDLvepsgsitggSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRS--------------LEDLLEELR 708
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1795 LQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEGSvKSKFKATISTLEAKIAQLEEQLEQEAKERAAANKL 1874
Cdd:COG1196  709 RQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEE-LEELQERLEELEEELESLEEALAKLKEEIEELEEK 787
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1875 VRRTEKKLKEVFMQVEDERRHADQYKEQMEKANARMKQLKRQLEEAEEEATRANASRRKLQRELDDATEANEGLSREVST 1954
Cdd:COG1196  788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEE 867

                 ....*..
gi 45382679 1955 LKNRLRR 1961
Cdd:COG1196  868 LEAEKEE 874
MYSc_Myo33 cd14894
class myosin, motor domain; Class XXXIII myosins have variable numbers of IQ domain and 2 ...
228-743 2.62e-24

class myosin, motor domain; Class XXXIII myosins have variable numbers of IQ domain and 2 tandem ANK repeats that are separated by a PH domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276859 [Multi-domain]  Cd Length: 871  Bit Score: 111.37  E-value: 2.62e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  228 LLQANPILESFGNAKTVKNDNSSRFGKF--IRINFDVTGY---IVGANIETYLLEKSRAVRQA------KDERTFHIFYQ 296
Cdd:cd14894  249 VLDSNIVLEAFGHATTSMNLNSSRFGKMttLQVAFGLHPWefqICGCHISPFLLEKSRVTSERgresgdQNELNFHILYA 328
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  297 LLAGAGEH-----LKSDLLLEGFN--NYRFLSNGYIPIPG--------QQDKDNFQETMEAMHIMGFSHDEILSMLKVVS 361
Cdd:cd14894  329 MVAGVNAFpfmrlLAKELHLDGIDcsALTYLGRSDHKLAGfvskedtwKKDVERWQQVIDGLDELNVSPDEQKTIFKVLS 408
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  362 SVLQFGNISFKKERNTDQASMPEN---TVAQKLCHLLGMNVME-FTRAILTPRIKV--GRDYVQKAQTKEQADFAVEALA 435
Cdd:cd14894  409 AVLWLGNIELDYREVSGKLVMSSTgalNAPQKVVELLELGSVEkLERMLMTKSVSLqsTSETFEVTLEKGQVNHVRDTLA 488
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  436 KATYERLFRWLVHRINKAL-------DRTKRQ---------GASFIGILDIAGFEIFELNSFEQLCINYTNEKLqqlfnh 499
Cdd:cd14894  489 RLLYQLAFNYVVFVMNEATkmsalstDGNKHQmdsnasapeAVSLLKIVDVFGFEDLTHNSLDQLCINYLSEKL------ 562
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  500 tmfileqeeYQREGiewNFIDFGLDLQPCI-------DLIERPANPPGVLALLDEECWFPKAT----------DKTFVEK 562
Cdd:cd14894  563 ---------YAREE---QVIAVAYSSRPHLtardsekDVLFIYEHPLGVFASLEELTILHQSEnmnaqqeekrNKLFVRN 630
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  563 LVQEQGthSKFQKPRQLKDKAD-----------FCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDKFVAELWKD 631
Cdd:cd14894  631 IYDRNS--SRLPEPPRVLSNAKrhtpvllnvlpFVIPHTRGNVIYDANDFVKKNSDFVYANLLVGLKTSNSSHFCRMLNE 708
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  632 EIQniqracfydnitglhdppvdrivgLDQVTGITETAFGSAYKTKKGMFRTVGQlYKESLTKLMATLRNTNPNFVRCII 711
Cdd:cd14894  709 SSQ------------------------LGWSPNTNRSMLGSAESRLSGTKSFVGQ-FRSHVNVLTSQDDKNMPFYFHCIR 763
                        570       580       590
                 ....*....|....*....|....*....|..
gi 45382679  712 PNHEKRAGKLDPHLVLDQLRCNGVLEGIRICR 743
Cdd:cd14894  764 PNAKKQPSLVNNDLVEQQCRSQRLIRQMEICR 795
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
1137-1912 1.55e-23

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 109.04  E-value: 1.55e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1137 KNNALKVIRELQAQIAELQEDLESekaSRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEE 1216
Cdd:pfam15921   73 KEHIERVLEEYSHQVKDLQRRLNE---SNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQN 149
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1217 ETKNHEAQiqeiRQRHATALEELSEQLEQAKRFKANLEKNKQGLESD--NKELACEVKVLQQVKAESEHKR--------- 1285
Cdd:pfam15921  150 TVHELEAA----KCLKEDMLNDSNTQIEQLRKMMLSHEGVLQEIRSIlvDFEEASGKKIYEHDSMSTIHFRslgsaiski 225
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1286 -KKLDAQVQELTAKVTEGE-RLRVELAEKANK----LQNELDNVSSLLEEAEKKGIKFAKDAASLESQ---LQDTQELLQ 1356
Cdd:pfam15921  226 lRELDTEISYLKGRIFPVEdQLEALKSESQNKiellLQQHQDRIEQLISEHEVEITGLTEKASSARSQansIQSQLEIIQ 305
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1357 EETRQKLnlSSRIRQLEEeknnlqeqqeeeeearknLEKQMLALQAQLAEAKKKVDDdlgTIEGLEenKKKLLKDMESLS 1436
Cdd:pfam15921  306 EQARNQN--SMYMRQLSD------------------LESTVSQLRSELREAKRMYED---KIEELE--KQLVLANSELTE 360
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1437 QRLEEkamayDKLEKTKNRLQQELDDLMVDLdHQRQIVSNLEKKQKK--FDQMLAEEKNISARYAEERDR-AEAEAREKE 1513
Cdd:pfam15921  361 ARTER-----DQFSQESGNLDDQLQKLLADL-HKREKELSLEKEQNKrlWDRDTGNSITIDHLRRELDDRnMEVQRLEAL 434
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1514 TKALSlARALEEALEAKEEFERQNKQLR---ADMEDLMSSKDDVGKNVHELEKSKRTLE---QQVEEMRTQLEELEDELQ 1587
Cdd:pfam15921  435 LKAMK-SECQGQMERQMAAIQGKNESLEkvsSLTAQLESTKEMLRKVVEELTAKKMTLEsseRTVSDLTASLQEKERAIE 513
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1588 AT--EDAKLRLEVNMQAMKAQFERdlqardeqNEEKkrmlvkQVRELEAELEDERKQRAlavAAKKKMEMDLKDLEGQIE 1665
Cdd:pfam15921  514 ATnaEITKLRSRVDLKLQELQHLK--------NEGD------HLRNVQTECEALKLQMA---EKDKVIEILRQQIENMTQ 576
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1666 -AANKARDEAIKQLRK--LQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERD 1742
Cdd:pfam15921  577 lVGQHGRTAGAMQVEKaqLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERD 656
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1743 ELADEIANSASGKSALLDEkrrleariaqleeeleeeqsnMELLNERFRKTTLQVDTLNSELAGERSAAQ----KSENAR 1818
Cdd:pfam15921  657 QLLNEVKTSRNELNSLSED---------------------YEVLKRNFRNKSEEMETTTNKLKMQLKSAQseleQTRNTL 715
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1819 QQLERQNKELKAKLQELEGSVKSKfKATISTLEAKIAQLEEQLEQEAKERaaanKLVRRTEKKLKEVFMQVEDERRHADQ 1898
Cdd:pfam15921  716 KSMEGSDGHAMKVAMGMQKQITAK-RGQIDALQSKIQFLEEAMTNANKEK----HFLKEEKNKLSQELSTVATEKNKMAG 790
                          810
                   ....*....|....
gi 45382679   1899 YKEQMEKANARMKQ 1912
Cdd:pfam15921  791 ELEVLRSQERRLKE 804
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
997-1586 4.34e-23

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 107.46  E-value: 4.34e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   997 RQKLQLEKV-TAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLK 1075
Cdd:PRK03918  152 RQILGLDDYeNAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK 231
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1076 KEEKTRQELEKAKR---KLDGETTDLQDQIAELQAQIEELKiqlaKKEEELQAALARgdeeavqknnaLKVIRELQAQIA 1152
Cdd:PRK03918  232 ELEELKEEIEELEKeleSLEGSKRKLEEKIRELEERIEELK----KEIEELEEKVKE-----------LKELKEKAEEYI 296
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1153 ELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQ---EVAELKKAIE--EETKNHEAQIQE 1227
Cdd:PRK03918  297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKElekRLEELEERHElyEEAKAKKEELER 376
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1228 IRQRHA-TALEELSEQLEQAKRFKANLEKN-------KQGLESDNKELACEVKVLQQVKAE--------SEHKRKKLdaq 1291
Cdd:PRK03918  377 LKKRLTgLTPEKLEKELEELEKAKEEIEEEiskitarIGELKKEIKELKKAIEELKKAKGKcpvcgrelTEEHRKEL--- 453
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1292 VQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEK--KGIKFAKDAASLESQLQD-TQELLQEETRQKLNLSSR 1368
Cdd:PRK03918  454 LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEK 533
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1369 IRQLEEEKNNLQEQQEEEeearKNLEKQMLALQAQLAEAKKKVDDDLGTiegLEENKKKLLKDMESLSQRLEEKAMAYDK 1448
Cdd:PRK03918  534 LIKLKGEIKSLKKELEKL----EELKKKLAELEKKLDELEEELAELLKE---LEELGFESVEELEERLKELEPFYNEYLE 606
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1449 LEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEErdraeaEAREKETKALSLARALEEALE 1528
Cdd:PRK03918  607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE------EYEELREEYLELSRELAGLRA 680
                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 45382679  1529 AKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEqQVEEMRTQLEELEDEL 1586
Cdd:PRK03918  681 ELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE-RVEELREKVKKYKALL 737
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
1345-1961 1.07e-21

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 103.32  E-value: 1.07e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1345 ESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEeeeeARKNLEKQMLALQAQLAEAKKKVDDDLGTIE----- 1419
Cdd:pfam01576   11 EEELQKVKEKQQKAESELKELEKKHQQLCEEKNILAEQLQ----AETELFAEAEEMRARLAARKQELEEILHELEarlee 86
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1420 ------GLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQEL----DDLMVDLDHQrqivSNLEKKQKKFDQMLA 1489
Cdd:pfam01576   87 eeersqQLQNEKKKMQQHIQDLEEQLEEEEAARQKLQLEKVTTEAKIkkmeEDILLLEDQN----NKLQKERKLLEERIS 162
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1490 EeknISARYAEErdraeaearekETKALSLARALEealeakeeferQNKQLRADMEDLMSSKDdvgKNVHELEKSKRTLE 1569
Cdd:pfam01576  163 E---FTSNLAEE-----------EEKSKSLNKLKN-----------KHEAMISDLEDRLKKEE---KGRQELEKAKRKLE 214
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1570 QQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFErDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAA 1649
Cdd:pfam01576  215 GESSDLQEQIAELQAQIAELRAQLAKKEEELQAALARLE-EETAQKNAALKKLRELEAQLSELQEDLESERAARAKAEKQ 293
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1650 KKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELE-EARASRDEIFAQSKESEKKLKGLEAEILQLQEEFA 1728
Cdd:pfam01576  294 RRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEeETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKA 373
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1729 ASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGER 1808
Cdd:pfam01576  374 SLEKAKQALESENAELQAELRSLQQAKQDSEHKRKKLEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEAE 453
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1809 SAAQKSENARQQLERQNKELKAKLQElEGSVKSKFKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLKEVFMQ 1888
Cdd:pfam01576  454 GKNIKLSKDVSSLESQLQDTQELLQE-ETRQKLNLSSRLRQLEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKK 532
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679   1889 VEDERRHADQYKEQMEKANARMKQLKRQLEEAEEEATRANASRRKLQRELDDATEANEGLSREVSTLKNRLRR 1961
Cdd:pfam01576  533 LEEDAGAVEALEEGRKRLQRELEALTQRLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKK 605
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
878-1765 4.44e-21

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 101.20  E-value: 4.44e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    878 VTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRArlAAKKQELEEILHD 957
Cdd:pfam02463  164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLY--LDYLKLNEERIDL 241
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    958 LESRVEEEEERNQILQNEKKKMQGHIqdleeqldeeegarQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMED 1037
Cdd:pfam02463  242 LQELLRDEQEEIESSKQEIEKEEEKL--------------AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLER 307
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1038 RIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLdgettdLQDQIAELQAQiEELKIQLA 1117
Cdd:pfam02463  308 RKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEEL------EKLQEKLEQLE-EELLAKKK 380
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1118 KKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTtaaqQ 1197
Cdd:pfam02463  381 LESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEK----Q 456
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1198 ELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQV 1277
Cdd:pfam02463  457 ELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGV 536
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1278 KAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQE 1357
Cdd:pfam02463  537 AVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEAD 616
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1358 ETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQ 1437
Cdd:pfam02463  617 EDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILR 696
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1438 RLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKnisaryaeerdrAEAEAREKETKAL 1517
Cdd:pfam02463  697 RQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEE------------EEKSRLKKEEKEE 764
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1518 SLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLE 1597
Cdd:pfam02463  765 EKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKE 844
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1598 VNMQAMKAQFE-RDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIK 1676
Cdd:pfam02463  845 EQKLEKLAEEElERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIK 924
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1677 QLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERD-----ELADEIANS 1751
Cdd:pfam02463  925 EEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYnkdelEKERLEEEK 1004
                          890
                   ....*....|....
gi 45382679   1752 ASGKSALLDEKRRL 1765
Cdd:pfam02463 1005 KKLIRAIIEETCQR 1018
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
876-1451 5.49e-21

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 100.61  E-value: 5.49e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  876 LQVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEIL 955
Cdd:COG0419  218 LEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELE 297
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  956 HDLEsrveeeeeRNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLM 1035
Cdd:COG0419  298 REIE--------ELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEER 369
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1036 EDRIaectsqLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLdgetTDLQDQIAELQAQIEELKIQ 1115
Cdd:COG0419  370 LEEL------EKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKEL----EELERELEELEEEIKKLEEQ 439
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1116 LAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEdtldttaA 1195
Cdd:COG0419  440 INQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELR-------E 512
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1196 QQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQrhatalEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQ 1275
Cdd:COG0419  513 LEEELIELLELEEALKEELEEKLEKLENLLEELEE------LKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKE 586
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1276 QVKA--ESEHKRKKLDAQVQELTAKVtEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLEsQLQDTQE 1353
Cdd:COG0419  587 ELEElrERLKELKKKLKELEERLSQL-EELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALE-ELEEKVE 664
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1354 LLQEETRQKLNLSSRIRQLEEEKNNLqeqqeeeeearKNLEKQMLALQAQLAEAKKKvdddLGTIEGLEENKKKLLKDME 1433
Cdd:COG0419  665 ELEAEIRRELQRIENEEQLEEKLEEL-----------EQLEEELEQLREELEELLKK----LGEIEQLIEELESRKAELE 729
                        570
                 ....*....|....*...
gi 45382679 1434 SLSQRLEEKAMAYDKLEK 1451
Cdd:COG0419  730 ELKKELEKLEKALELLEE 747
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
877-1219 6.35e-21

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 100.56  E-value: 6.35e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  877 QVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILH 956
Cdd:COG1196  675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELE 754
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  957 DLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLME 1036
Cdd:COG1196  755 ELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1037 DRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQL 1116
Cdd:COG1196  835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1117 AKKEEELQAALARGDEEAVQKNNALKVIR--ELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDtldtta 1194
Cdd:COG1196  915 EELEAKLERLEVELPELEEELEEEYEDTLetELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRED------ 988
                        330       340
                 ....*....|....*....|....*
gi 45382679 1195 aQQELRTKREQEVAELKKAIEEETK 1219
Cdd:COG1196  989 -LEEAKEKLLEVIEELDKEKRERFK 1012
PTZ00121 PTZ00121
MAEBL; Provisional
880-1751 2.56e-20

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 99.06  E-value: 2.56e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   880 RQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMR----ARLAAKKQELEEIL 955
Cdd:PTZ00121 1115 RKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKkaeaARKAEEVRKAEELR 1194
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   956 HDLESRVEEEEERnqiLQNEKKkmqghiqdleeqLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLM 1035
Cdd:PTZ00121 1195 KAEDARKAEAARK---AEEERK------------AEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1036 EDRIAECTSQLAEEEEKAKNLAKLKNKQEmmITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELK-- 1113
Cdd:PTZ00121 1260 ARMAHFARRQAAIKAEEARKADELKKAEE--KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKkk 1337
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1114 IQLAKKEEELQAALARGDEEAVQKNnalkvirELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTT 1193
Cdd:PTZ00121 1338 AEEAKKAAEAAKAEAEAAADEAEAA-------EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1194 AAQQELRTKREqevaELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKelACEVKV 1273
Cdd:PTZ00121 1411 KKAAAAKKKAD----EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK--AEEAKK 1484
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1274 LQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNEldnvssllEEAEKKGIKFAKDAASLESQLQDTQE 1353
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA--------EEAKKADEAKKAEEKKKADELKKAEE 1556
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1354 LLQEETRQKLNLSSRirqlEEEKNNLQEQQEEEEearKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDME 1433
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKK----AEEDKNMALRKAEEA---KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1434 SLSQRLEEKAMAYDKLEKTKNRLQQElddlmvdlDHQRQIVSNLEKKQKKFDQMLAEEknisARYAEERDRAEAEAREKE 1513
Cdd:PTZ00121 1630 EEKKKVEQLKKKEAEEKKKAEELKKA--------EEENKIKAAEEAKKAEEDKKKAEE----AKKAEEDEKKAAEALKKE 1697
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1514 TKAlslARALEEALEAKEEFERQNKQLRADMEDLMSskddvgkNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAK 1593
Cdd:PTZ00121 1698 AEE---AKKAEELKKKEAEEKKKAEELKKAEEENKI-------KAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEE 1767
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1594 LRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEmdlkdlegqieaankarDE 1673
Cdd:PTZ00121 1768 KKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEME-----------------DS 1830
                         810       820       830       840       850       860       870
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 45382679  1674 AIKQLRKLQAQMKDYQRELEEARASRDEIfaqSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANS 1751
Cdd:PTZ00121 1831 AIKEVADSKNMQLEEADAFEKHKFNKNNE---NGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNN 1905
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
881-1457 4.42e-20

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 97.83  E-value: 4.42e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   881 QEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEqLQAETElfaEAEEMRARLAAKKQELEEILHDLES 960
Cdd:PRK03918  198 KEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE-LEKELE---SLEGSKRKLEEKIRELEERIEELKK 273
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   961 RVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARqKLQLEKVTAEAKIKKMEEEILLLEDQNSkflkEKKLMEDRIA 1040
Cdd:PRK03918  274 EIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELR-EIEKRLSRLEEEINGIEERIKELEEKEE----RLEELKKKLK 348
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1041 ECTSQLAEEEEKAKNLAKLKNKQEMM-----------ITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQI 1109
Cdd:PRK03918  349 ELEKRLEELEERHELYEEAKAKKEELerlkkrltgltPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI 428
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1110 EELKiqLAKKEEELQAALARGDEEAvqknnalKVIRELQAQIAELQEDLEsekasrnKAEKQKRDLSEELEALKTELEdt 1189
Cdd:PRK03918  429 EELK--KAKGKCPVCGRELTEEHRK-------ELLEEYTAELKRIEKELK-------EIEEKERKLRKELRELEKVLK-- 490
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1190 ldttaaqQELRTKREQEVAELKKAIEEETKNHEAQiqeirqrhatALEELSEQLEQAKRFKANLEKNKQGLESD---NKE 1266
Cdd:PRK03918  491 -------KESELIKLKELAEQLKELEEKLKKYNLE----------ELEKKAEEYEKLKEKLIKLKGEIKSLKKElekLEE 553
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1267 LACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKgikfakdAASLES 1346
Cdd:PRK03918  554 LKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKE-------LKKLEE 626
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1347 QLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARknLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKK 1426
Cdd:PRK03918  627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLE--LSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
                         570       580       590
                  ....*....|....*....|....*....|.
gi 45382679  1427 KllkdmeslsqrLEEKAMAYDKLEKTKNRLQ 1457
Cdd:PRK03918  705 E-----------REKAKKELEKLEKALERVE 724
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
895-1512 5.28e-20

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 97.44  E-value: 5.28e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   895 VKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILH---DLESRVEEEEERNQI 971
Cdd:PRK03918  146 SREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLReinEISSELPELREELEK 225
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   972 LQNEKKKMQGHiqdleeqldeeEGARQKLQLEKVTAEAKIKKMEEEIllledqnskflkekKLMEDRIAECTSQLAEEEE 1051
Cdd:PRK03918  226 LEKEVKELEEL-----------KEEIEELEKELESLEGSKRKLEEKI--------------RELEERIEELKKEIEELEE 280
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1052 KAKNLAKLKNKQEMMITdLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKiQLAKKEEELQAALARGD 1131
Cdd:PRK03918  281 KVKELKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE-ELKKKLKELEKRLEELE 358
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1132 EEAvqknNALKVIRELQAQIaelqEDLESEKASRNKaEKQKRDLsEELEALKTELEDTLDTTAAQqelRTKREQEVAELK 1211
Cdd:PRK03918  359 ERH----ELYEEAKAKKEEL----ERLKKRLTGLTP-EKLEKEL-EELEKAKEEIEEEISKITAR---IGELKKEIKELK 425
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1212 KAIEEETKNH-----------EAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLE---SDNKELACEVKVLQQV 1277
Cdd:PRK03918  426 KAIEELKKAKgkcpvcgreltEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEkvlKKESELIKLKELAEQL 505
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1278 KaESEHKRKKLDaqVQELTAKVTEGERLRvelaEKANKLQNELDNVSSLLEEAEkkgiKFAKDAASLESQLQDTQELLQE 1357
Cdd:PRK03918  506 K-ELEEKLKKYN--LEELEKKAEEYEKLK----EKLIKLKGEIKSLKKELEKLE----ELKKKLAELEKKLDELEEELAE 574
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1358 ETRQKLN--------LSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLaLQAQLAEAKKKVDDDLGTIEGLEENKKKLL 1429
Cdd:PRK03918  575 LLKELEElgfesveeLEERLKELEPFYNEYLELKDAEKELEREEKELKK-LEEELDKAFEELAETEKRLEELRKELEELE 653
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1430 K-----DMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQK---KFDQMLAEEKNISARYAEE 1501
Cdd:PRK03918  654 KkyseeEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKeleKLEKALERVEELREKVKKY 733
                         650
                  ....*....|.
gi 45382679  1502 RDRAEAEAREK 1512
Cdd:PRK03918  734 KALLKERALSK 744
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1202-1959 7.12e-20

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 97.45  E-value: 7.12e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1202 KREQEVAELKkAIEEETKNHEAQIQEIRQRhataLEELSEQLEQAKRFKAnLEKNKQGLESdnKELACEVKVLqqvkaes 1281
Cdd:TIGR02169  171 KKEKALEELE-EVEENIERLDLIIDEKRQQ----LERLRREREKAERYQA-LLKEKREYEG--YELLKEKEAL------- 235
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1282 EHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEE-AEKKGIKFAKDAASLESQLQDTQELLQEETR 1360
Cdd:TIGR02169  236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKER 315
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1361 QKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLE 1440
Cdd:TIGR02169  316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1441 EKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDqmlaeeknisaryaEERDRAEAEAREKETKALSLA 1520
Cdd:TIGR02169  396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE--------------EEKEDKALEIKKQEWKLEQLA 461
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1521 raleealEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQAT----------- 1589
Cdd:TIGR02169  462 -------ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVhgtvaqlgsvg 534
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1590 EDAKLRLEV----NMQAMKAQFERDLQARDEQNEEKK--RMLVKQVRELEAEledERKQRALAVAAKKKMEMDLKDLEGQ 1663
Cdd:TIGR02169  535 ERYATAIEVaagnRLNNVVVEDDAVAKEAIELLKRRKagRATFLPLNKMRDE---RRDLSILSEDGVIGFAVDLVEFDPK 611
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1664 IEAANK--ARD----EAIKQLRKL--QAQMKDYQRELEE--------ARASRDEIFAQSKESEKkLKGLEAEILQLQEEF 1727
Cdd:TIGR02169  612 YEPAFKyvFGDtlvvEDIEAARRLmgKYRMVTLEGELFEksgamtggSRAPRGGILFSRSEPAE-LQRLRERLEGLKREL 690
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1728 AASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGE 1807
Cdd:TIGR02169  691 SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL 770
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1808 RSAAQKSENARQQLER-----QNKELKAKLQELEGSVkSKFKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKL 1882
Cdd:TIGR02169  771 EEDLHKLEEALNDLEArlshsRIPEIQAELSKLEEEV-SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679   1883 KEVFMQVEDERRHADQYKEQMEKANARMKQLKRQLEEAEEEATRANASRRKLQRELDDATEANEGLSREVSTLKNRL 1959
Cdd:TIGR02169  850 KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1051-1432 7.54e-20

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 97.05  E-value: 7.54e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1051 EKAKNLAKLKNKQEMM---ITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAAL 1127
Cdd:TIGR02168  674 ERRREIEELEEKIEELeekIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1128 ARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEV 1207
Cdd:TIGR02168  754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1208 AELKKAIEEETKNHEaQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKK 1287
Cdd:TIGR02168  834 AATERRLEDLEEQIE-ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1288 LDAQVQELTAKV----TEGERLRVELAEKANKLQNEldnVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKL 1363
Cdd:TIGR02168  913 LRRELEELREKLaqleLRLEGLEVRIDNLQERLSEE---YSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNL 989
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679   1364 NLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQaqlAEAKKKVDDdlgTIEGLEENKKKLLKDM 1432
Cdd:TIGR02168  990 AAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEID---REARERFKD---TFDQVNENFQRVFPKL 1052
PTZ00121 PTZ00121
MAEBL; Provisional
1011-1829 9.67e-20

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 97.13  E-value: 9.67e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1011 IKKMEEeiLLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAK-- 1088
Cdd:PTZ00121 1026 IEKIEE--LTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEea 1103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1089 RKLDGETTDLQDQIAELQAQIEELKiqlaKKEEELQAALARGDEEAVQKNNALKVIRELQAQIA-ELQEDLESEKASRNK 1167
Cdd:PTZ00121 1104 KKTETGKAEEARKAEEAKKKAEDAR----KAEEARKAEDARKAEEARKAEDAKRVEIARKAEDArKAEEARKAEDAKKAE 1179
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1168 AEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAK 1247
Cdd:PTZ00121 1180 AARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1248 RFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRvELAEKANKLQNELDNVSSLL 1327
Cdd:PTZ00121 1260 ARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKKKADAAKKKA 1338
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1328 EEAEKKGIKFAKDAASLESQLQDTQEllqEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEA 1407
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEE---KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAA 1415
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1408 KKKVDDDLgtiegleENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQEldDLMVDLDHQRQIVSNLEKKQKKFDQM 1487
Cdd:PTZ00121 1416 AKKKADEA-------KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE--EAKKKAEEAKKADEAKKKAEEAKKAD 1486
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1488 LAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEdlmSSKDDVGKNVHELEKSKRT 1567
Cdd:PTZ00121 1487 EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEE---KKKADELKKAEELKKAEEK 1563
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1568 leQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQ--NEEKKRMLVKQVRELEAELEDERKQRAL 1645
Cdd:PTZ00121 1564 --KKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEakKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1646 AVAAKKKMEMDLKDlegqiEAANKARDEAIKQlrklqaQMKDYQRELEEARASRDEifaqSKESEKKLKGLEAEILQLQE 1725
Cdd:PTZ00121 1642 EAEEKKKAEELKKA-----EEENKIKAAEEAK------KAEEDKKKAEEAKKAEED----EKKAAEALKKEAEEAKKAEE 1706
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1726 EFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELa 1805
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL- 1785
                         810       820
                  ....*....|....*....|....
gi 45382679  1806 gersaAQKSENARQQLERQNKELK 1829
Cdd:PTZ00121 1786 -----DEEDEKRRMEVDKKIKDIF 1804
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1142-1738 1.04e-19

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 96.37  E-value: 1.04e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1142 KVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSE-----ELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEE 1216
Cdd:COG0419  185 AKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEiqeeqEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESL 264
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1217 ETKNHEAQIQEIRQ--RHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQE 1294
Cdd:COG0419  265 ELEALKIREEELREleRLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESE 344
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1295 LTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAK-------DAASLESQLQDTQELLQEETRQKLNLS- 1366
Cdd:COG0419  345 LEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEaiqelkeELAELSAALEEIQEELEELEKELEELEr 424
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1367 ------SRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTieGLEENKKKLLKDMESLSQRLE 1440
Cdd:COG0419  425 eleeleEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYEL--ELEELEEELSREKEEAELREE 502
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1441 ekamaYDKLEKTKNRLQQELDDLMVDldhQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLA 1520
Cdd:COG0419  503 -----IEELEKELRELEEELIELLEL---EEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKEL 574
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1521 RALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSkRTLEQQVEEMRTQLEELEDELQATEdAKLRLEVNM 1600
Cdd:COG0419  575 LEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQS-LELSEAENELEEAEEELESELEKLN-LQAELEELL 652
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1601 QAMKAQFERDLQARDEQnEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEmDLKDLEGQIEAANKARDEAIKQLRK 1680
Cdd:COG0419  653 QAALEELEEKVEELEAE-IRRELQRIENEEQLEEKLEELEQLEEELEQLREELE-ELLKKLGEIEQLIEELESRKAELEE 730
                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 45382679 1681 LQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAE 1738
Cdd:COG0419  731 LKKELEKLEKALELLEELREKLGKAGLRADILRNLLAQIEAEANEILSKLSLNRYDLR 788
PTZ00121 PTZ00121
MAEBL; Provisional
876-1515 1.88e-19

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 96.36  E-value: 1.88e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   876 LQVTRQEEELQaKDEELMKVKEKQTKVEAELEEMERKHQQLLE-EKNILAEQLQAETELFAEAEEmrARLAAKKQELEEI 954
Cdd:PTZ00121 1178 AEAARKAEEVR-KAEELRKAEDARKAEAARKAEEERKAEEARKaEDAKKAEAVKKAEEAKKDAEE--AKKAEEERNNEEI 1254
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   955 LHDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEG-----ARQKLQLEKVTAEAK----IKKMEEEILLLEDQN 1025
Cdd:PTZ00121 1255 RKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAkkaeeKKKADEAKKKAEEAKkadeAKKKAEEAKKKADAA 1334
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1026 SKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKK--EEKTRQELEKAKRKLDGETTDLQDQIA 1103
Cdd:PTZ00121 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKkaEEKKKADEAKKKAEEDKKKADELKKAA 1414
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1104 ELQAQIEEL--KIQLAKKEEEL--QAALARGDEEAVQKNNALKVIREL--QAQIAELQEDLESEKASRNKAEKQKRDlSE 1177
Cdd:PTZ00121 1415 AAKKKADEAkkKAEEKKKADEAkkKAEEAKKADEAKKKAEEAKKAEEAkkKAEEAKKADEAKKKAEEAKKADEAKKK-AE 1493
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1178 ELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRhataleelSEQLEQAKRFKANLEKNK 1257
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKK--------ADELKKAEELKKAEEKKK 1565
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1258 qgleSDNKELACEVKVLQQVKAESEHKRKKldAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSllEEAEKKGIKF 1337
Cdd:PTZ00121 1566 ----AEEAKKAEEDKNMALRKAEEAKKAEE--ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK--AEEEKKKVEQ 1637
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1338 AKDAAslESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNlekqmlalqaqlAEAKKKVDDDLGT 1417
Cdd:PTZ00121 1638 LKKKE--AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA------------AEALKKEAEEAKK 1703
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1418 IEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISAR 1497
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
                         650
                  ....*....|....*...
gi 45382679  1498 YAEERDRAEAEAREKETK 1515
Cdd:PTZ00121 1784 ELDEEDEKRRMEVDKKIK 1801
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
876-1687 2.93e-19

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 95.42  E-value: 2.93e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    876 LQVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEIL 955
Cdd:pfam02463  188 LIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKL 267
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    956 HDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLM 1035
Cdd:pfam02463  268 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKEL 347
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1036 EDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKtRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQ 1115
Cdd:pfam02463  348 EIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAK-LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKK 426
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1116 LAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDT--- 1192
Cdd:pfam02463  427 EELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESkar 506
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1193 ------TAAQQELRTKREQEVAELKKAIEEETKNHEAQI--QEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESD- 1263
Cdd:pfam02463  507 sglkvlLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIstAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPk 586
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1264 -------------NKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEA 1330
Cdd:pfam02463  587 lklplksiavleiDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKA 666
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1331 EKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKK 1410
Cdd:pfam02463  667 SLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKID 746
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1411 VDDDlgtiEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAE 1490
Cdd:pfam02463  747 EEEE----EEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQL 822
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1491 EKNISArYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQ 1570
Cdd:pfam02463  823 LIEQEE-KIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKE 901
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1571 QVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQN--EEKKRMLVKQVRELEAELEDERKQRALAVA 1648
Cdd:pfam02463  902 LEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEkeENNKEEEEERNKRLLLAKEELGKVNLMAIE 981
                          810       820       830
                   ....*....|....*....|....*....|....*....
gi 45382679   1649 AKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKD 1687
Cdd:pfam02463  982 EFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLK 1020
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1324-1959 5.77e-19

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 94.40  E-value: 5.77e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1324 SSLLEEAEkkGI-KFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEqqeeeeeaRKNLEKQMLALQA 1402
Cdd:COG1196  158 RKLIEEAA--GVsKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER--------YQELKAELRELEL 227
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1403 QLAEAKkkvdddlgtIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQK 1482
Cdd:COG1196  228 ALLLAK---------LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIE 298
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1483 KFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEdlmsskddvgknvhELE 1562
Cdd:COG1196  299 ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE--------------ELE 364
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1563 KSKRTLEQQVEEMrtqLEELEDELQATEDAKLRLEVNMQAMKAQFErDLQARDEQNEEKKRMLVKQVRELEAELEDERKQ 1642
Cdd:COG1196  365 EKLSALLEELEEL---FEALREELAELEAELAEIRNELEELKREIE-SLEERLERLSERLEDLKEELKELEAELEELQTE 440
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1643 RALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLE----- 1717
Cdd:COG1196  441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPgvygp 520
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1718 -AEILQLQEEF-AASERARRHAEQ----ERDELADEI------ANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMEL 1785
Cdd:COG1196  521 vAELIKVKEKYeTALEAALGNRLQavvvENEEVAKKAieflkeNKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLID 600
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1786 LNERFRK-------TTLQVDTLNS--ELAGERSAAQKSENARQQLERQNKELKAKLQELEGSVKSKFKatISTLEAKIAQ 1856
Cdd:COG1196  601 FDPKYEPavrfvlgDTLVVDDLEQarRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRE--LKELEEELAE 678
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1857 LEEQLEQEAKERAAANKLVRRTEKKLKEVFMQVEDERRHADQYKEQMEKANARMKQLKRQLEEAEEEATRANASRRKLQR 1936
Cdd:COG1196  679 LEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQE 758
                        650       660
                 ....*....|....*....|...
gi 45382679 1937 ELDDATEANEGLSREVSTLKNRL 1959
Cdd:COG1196  759 RLEELEEELESLEEALAKLKEEI 781
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1167-1748 6.12e-19

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 93.98  E-value: 6.12e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1167 KAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIR--QRHATALEELSEQLE 1244
Cdd:PRK03918  162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEklEKEVKELEELKEEIE 241
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1245 QAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDaQVQELTAKVTEGERLRVELAEKANKLQNELDNVS 1324
Cdd:PRK03918  242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLE 320
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1325 SLLEEAEKKGIKFAKDAASLESQLQDTQELLQ--EETRQKLNLSSRIRQLEEEKNNLQEQQ------------EEEEEAR 1390
Cdd:PRK03918  321 EEINGIEERIKELEEKEERLEELKKKLKELEKrlEELEERHELYEEAKAKKEELERLKKRLtgltpeklekelEELEKAK 400
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1391 KNLEKQMLALQAQLAEAKKKVDDDLGTIEGL---------------EENKKKLLKD-MESLSQRLEEKAMAYDKLEKTKN 1454
Cdd:PRK03918  401 EEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpvcgreltEEHRKELLEEyTAELKRIEKELKEIEEKERKLRK 480
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1455 RLqqelddlmVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFE 1534
Cdd:PRK03918  481 EL--------RELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE 552
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1535 RQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQAR 1614
Cdd:PRK03918  553 ELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAF 632
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1615 DEQNEEKKR--MLVKQVRELEAELEDERKQRAlaVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQ---MKDYQ 1689
Cdd:PRK03918  633 EELAETEKRleELRKELEELEKKYSEEEYEEL--REEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEEleeREKAK 710
                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679  1690 RELEEARASRDEIfaqsKESEKKLKGLEAEilqlqeefaaserARRHAEQERDELADEI 1748
Cdd:PRK03918  711 KELEKLEKALERV----EELREKVKKYKAL-------------LKERALSKVGEIASEI 752
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
973-1792 9.98e-19

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 93.50  E-value: 9.98e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    973 QNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLA-EEEE 1051
Cdd:pfam02463  173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRdEQEE 252
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1052 KAKNLAKLKNKQEMMITDLEER------LKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQA 1125
Cdd:pfam02463  253 IESSKQEIEKEEEKLAQVLKENkeeekeKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK 332
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1126 ALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLdTTAAQQELRTKREQ 1205
Cdd:pfam02463  333 EKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL-ELKSEEEKEAQLLL 411
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1206 EVAELKKAIEEETKNHEAQIQEIRQRHATALEE-LSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHK 1284
Cdd:pfam02463  412 ELARQLEDLLKEEKKEELEILEEEEESIELKQGkLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLS 491
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1285 RKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAE-----KKGIKFAKDAASLESQLQDTQELLQEET 1359
Cdd:pfam02463  492 RQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVenykvAISTAVIVEVSATADEVEERQKLVRALT 571
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1360 RQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLAlqAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRL 1439
Cdd:pfam02463  572 ELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKA--TLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLR 649
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1440 EEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSL 1519
Cdd:pfam02463  650 KGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQE 729
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1520 AraleEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLR-LEV 1598
Cdd:pfam02463  730 A----QDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEeLRA 805
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1599 NMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQL 1678
Cdd:pfam02463  806 LEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLK 885
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1679 RKLQaQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASErarrhaEQERDELADEIANSASGKSAL 1758
Cdd:pfam02463  886 DELE-SKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEP------EELLLEEADEKEKEENNKEEE 958
                          810       820       830
                   ....*....|....*....|....*....|....
gi 45382679   1759 LDEKRRLEARIAQLEEELEEEQSNMELLNERFRK 1792
Cdd:pfam02463  959 EERNKRLLLAKEELGKVNLMAIEEFEEKEERYNK 992
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
878-1485 1.61e-18

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 92.52  E-value: 1.61e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  878 VTRQEEELQAKDEELMKVKEK---------QTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKK 948
Cdd:COG0419  112 IADGKKDVNEKIEELLGLDKDtftrsvylpQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELE 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  949 QELEEILHDLESRVEEEEERnqiLQNEKKKMQghiQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKF 1028
Cdd:COG0419  192 GQLSELLEDIEDLLEALEEE---LKELKKLEE---IQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLE 265
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1029 LKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKN------KQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQI 1102
Cdd:COG0419  266 LEALKIREEELRELERLLEELEEKIERLEELEReieeleEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESEL 345
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1103 AELQAQIEELKIQLAKKEEELQAALARGDEEAV----QKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEE 1178
Cdd:COG0419  346 EELAEEKNELAKLLEERLKELEERLEELEKELEkaleRLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERE 425
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1179 LEALKTELEDTLDTTAAQQELRTKREQEVAELKK-----------AIEEETKNHEAQIQEIRQR------HATALEELSE 1241
Cdd:COG0419  426 LEELEEEIKKLEEQINQLESKELMIAELAGAGEKcpvcgqelpeeHEKELLELYELELEELEEElsrekeEAELREEIEE 505
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1242 QLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLdaQVQELTAKVTEGERLRVELaEKANKLQNELD 1321
Cdd:COG0419  506 LEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKL--QLQQLKEELRQLEDRLQEL-KELLEELRLLR 582
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1322 NVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEetRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQ 1401
Cdd:COG0419  583 TRKEELEELRERLKELKKKLKELEERLSQLEELLQS--LELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELE 660
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1402 AQLAEAKKKVDDDLGTIEGLEENKKKlLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1481
Cdd:COG0419  661 EKVEELEAEIRRELQRIENEEQLEEK-LEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLE 739

                 ....
gi 45382679 1482 KKFD 1485
Cdd:COG0419  740 KALE 743
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
881-1460 2.49e-18

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 92.03  E-value: 2.49e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   881 QEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLES 960
Cdd:PRK02224  214 ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEE 293
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   961 RveeeeernqilqnekkkmqghiqdleeqldeEEGARQKLQLEKVTAEAkikkmeeeillLEDQNSKFLKEKKLMEDRIA 1040
Cdd:PRK02224  294 E-------------------------------RDDLLAEAGLDDADAEA-----------VEARREELEDRDEELRDRLE 331
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1041 ECTSQLAEEEEKAKNLAKlknkqemMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE 1120
Cdd:PRK02224  332 ECRVAAQAHNEEAESLRE-------DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1121 EELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLES-----------------EKASRNKAEKQKRDLSEELEALK 1183
Cdd:PRK02224  405 VDLGNAEDFLEELREERDELREREAELEATLRTARERVEEaealleagkcpecgqpvEGSPHVETIEEDRERVEELEAEL 484
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1184 TELEDTLDTTAAqqelRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATaLEELSEQLEQakrfkanLEKNKQGLEsd 1263
Cdd:PRK02224  485 EDLEEEVEEVEE----RLERAEDLVEAEDRIERLEERREDLEELIAERRET-IEEKRERAEE-------LRERAAELE-- 550
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1264 nkelacevkvlqqvkAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNeLDNVSSLLEEAEKKGikfaKDAAS 1343
Cdd:PRK02224  551 ---------------AEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES-LERIRTLLAAIADAE----DEIER 610
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1344 LESQLQDTQElLQEETRQKL-NLSSRIRQLEEE--KNNLQEQQEEEEEARKNLEKQMLALQaQLAEAKKKVDDDLGTIEG 1420
Cdd:PRK02224  611 LREKREALAE-LNDERRERLaEKRERKRELEAEfdEARIEEAREDKERAEEYLEQVEEKLD-ELREERDDLQAEIGAVEN 688
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|...
gi 45382679  1421 LEENKKKLLKDMESLSQRLEEKAMAYDK---LEKTKNRLQQEL 1460
Cdd:PRK02224  689 ELEELEELRERREALENRVEALEALYDEaeeLESMYGDLRAEL 731
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
1104-1725 2.63e-18

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 91.62  E-value: 2.63e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1104 ELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKasrNKAEKQKRDLSEELEALK 1183
Cdd:TIGR04523   37 QLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNK---DKINKLNSDLSKINSEIK 113
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1184 TEledtldttaaqQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHaTALEELSEQLEQAKRFKANLEKNKQGLESD 1263
Cdd:TIGR04523  114 ND-----------KEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKE-KELEKLNNKYNDLKKQKEELENELNLLEKE 181
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1264 NKELACEVKVLQQVKAESEHKRKKLDAQVQ---ELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKD 1340
Cdd:TIGR04523  182 KLNIQKNIDKIKNKLLKLELLLSNLKKKIQknkSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE 261
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1341 AASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEAR-----KNLEKQMLALQAQLAEAKKKVDDDL 1415
Cdd:TIGR04523  262 QNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKElkselKNQEKKLEEIQNQISQNNKIISQLN 341
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1416 GTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDdlmvdldhqrqivsNLEKKQKKFDQMLAEEKNIS 1495
Cdd:TIGR04523  342 EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIK--------------NLESQINDLESKIQNQEKLN 407
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1496 ARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEM 1575
Cdd:TIGR04523  408 QQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQK 487
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1576 RTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRmLVKQVRELEAELE--DERKQRALAVAAKKKM 1653
Cdd:TIGR04523  488 QKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKE-KESKISDLEDELNkdDFELKKENLEKEIDEK 566
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 45382679   1654 EMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQE 1725
Cdd:TIGR04523  567 NKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKS 638
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1394-1961 3.50e-18

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 91.64  E-value: 3.50e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1394 EKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAmaydklEKtknrlQQELDDLMVDLDHQRQI 1473
Cdd:PRK02224  198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHE------ER-----REELETLEAEIEDLRET 266
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1474 VSNLEKKQKKFDQMLAEEKNISARYAEERD--RAEAEAREKETKALSLARALEEaleakeefeRQNKQLRADMEDLMSSK 1551
Cdd:PRK02224  267 IAETEREREELAEEVRDLRERLEELEEERDdlLAEAGLDDADAEAVEARREELE---------DRDEELRDRLEECRVAA 337
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1552 DDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAklrlevnmqamkaqferdlqaRDEQNEEkkrmlvkqVRE 1631
Cdd:PRK02224  338 QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREA---------------------VEDRREE--------IEE 388
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1632 LEAELEDERKQRALAvaakkkmEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDE---------- 1701
Cdd:PRK02224  389 LEEEIEELRERFGDA-------PVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpv 461
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1702 ----IFAQSKESEKKLKGLEAEILQLQEEFAASErarrhaeqERDELADEIANSASGKSALLDEKRRLEARIAQLEEELE 1777
Cdd:PRK02224  462 egspHVETIEEDRERVEELEAELEDLEEEVEEVE--------ERLERAEDLVEAEDRIERLEERREDLEELIAERRETIE 533
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1778 EEQSNMELLNERfrkttlqVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEGSVKSkfKATISTLEAKIAQL 1857
Cdd:PRK02224  534 EKRERAEELRER-------AAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES--LERIRTLLAAIADA 604
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1858 EEQLEqeakeraaanklvRRTEKklKEVFMQVEDERRhadqykEQMEKANARMKQLKRQLEEAEEEATRANASR-----R 1932
Cdd:PRK02224  605 EDEIE-------------RLREK--REALAELNDERR------ERLAEKRERKRELEAEFDEARIEEAREDKERaeeylE 663
                         570       580
                  ....*....|....*....|....*....
gi 45382679  1933 KLQRELDDATEANEGLSREVSTLKNRLRR 1961
Cdd:PRK02224  664 QVEEKLDELREERDDLQAEIGAVENELEE 692
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1301-1884 4.41e-18

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 90.98  E-value: 4.41e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1301 EGERLRVELAEKANKLQNELDNVSSLLEEAEKKgikFAKDAASLESqlqdtqELLQEETRQKLNLSSRIRQLEEEKNNLQ 1380
Cdd:COG0419  168 KYEKLSELLKEVIKEAKAKIEELEGQLSELLED---IEDLLEALEE------ELKELKKLEEIQEEQEEEELEQEIEALE 238
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1381 EQQEEEEEARKNLEKqmlaLQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQEL 1460
Cdd:COG0419  239 ERLAELEEEKERLEE----LKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALL 314
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1461 DDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQL 1540
Cdd:COG0419  315 EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQEL 394
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1541 RADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEvnmQAMKAQFERDLQARDEQNEE 1620
Cdd:COG0419  395 KEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIA---ELAGAGEKCPVCGQELPEEH 471
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1621 KKRMLVKQVRELEaELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRD 1700
Cdd:COG0419  472 EKELLELYELELE-ELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKE 550
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1701 EIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQ 1780
Cdd:COG0419  551 KLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEE 630
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1781 SNMELLNERfrkttlqvDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEGSVKSKFKA-TISTLEAKIAQLEE 1859
Cdd:COG0419  631 AEEELESEL--------EKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLeELEQLEEELEQLRE 702
                        570       580
                 ....*....|....*....|....*
gi 45382679 1860 QLEQEAKERAAANKLVRRTEKKLKE 1884
Cdd:COG0419  703 ELEELLKKLGEIEQLIEELESRKAE 727
PTZ00121 PTZ00121
MAEBL; Provisional
859-1513 5.98e-18

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 91.36  E-value: 5.98e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   859 KLRHWQWWRVFTKVKPLLQVTRQEEELQAKDEELMKVKEKQTKVEAElEEMERKHQQLLEEKNILAEQLQAETELFAEAE 938
Cdd:PTZ00121 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD-EAKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1325
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   939 EMRARLAAKKQELEEILHDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAK-----IKK 1013
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKkkaeeDKK 1405
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1014 MEEEILLLEDQNSKFLKEKKLMED-RIAECTSQLAEEEEKAKnlaKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLD 1092
Cdd:PTZ00121 1406 KADELKKAAAAKKKADEAKKKAEEkKKADEAKKKAEEAKKAD---EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA 1482
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1093 GETTDLQDQIAELQAQIEELKiqlAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQK 1172
Cdd:PTZ00121 1483 KKADEAKKKAEEAKKKADEAK---KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK 1559
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1173 RDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATAleelsEQLEQAKRFKAN 1252
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA-----EELKKAEEEKKK 1634
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1253 LEKNKQGLESDNKElACEVKVLQQ---VKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEE 1329
Cdd:PTZ00121 1635 VEQLKKKEAEEKKK-AEELKKAEEenkIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1330 AEKKGIKFAKDAASLESQLQDTQELLQEETRQklnlSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALqaqlaeAKK 1409
Cdd:PTZ00121 1714 EKKKAEELKKAEEENKIKAEEAKKEAEEDKKK----AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV------IEE 1783
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1410 KVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYdkLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLA 1489
Cdd:PTZ00121 1784 ELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLV--INDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENG 1861
                         650       660
                  ....*....|....*....|....
gi 45382679  1490 EEKNISARYAEERDRAEAEAREKE 1513
Cdd:PTZ00121 1862 EDGNKEADFNKEKDLKEDDEEEIE 1885
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
930-1768 8.59e-18

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 90.28  E-value: 8.59e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    930 ETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEEERNQILQNEKKkmqghiQDLEEQLDEEEGARQKLQLEKVTAEA 1009
Cdd:pfam12128  242 EFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELN------QLLRTLDDQWKEKRDELNGELSAADA 315
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1010 KIKKMEEEILLLEDQNSKFLKEkklmedriaectsqlaeeeekakNLAKLKNKQEMmitdleerlkkEEKTRQELEKAKR 1089
Cdd:pfam12128  316 AVAKDRSELEALEDQHGAFLDA-----------------------DIETAAADQEQ-----------LPSWQSELENLEE 361
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1090 KLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKviRELQAQIAELQEDLESEKASRNKAE 1169
Cdd:pfam12128  362 RLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAE--DDLQALESELREQLEAGKLEFNEEE 439
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1170 KQkrdLSEELEALKTEledtLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQ--IQEIRQRHATALEELSEQLEQAK 1247
Cdd:pfam12128  440 YR---LKSRLGELKLR----LNQATATPELLLQLENFDERIERAREEQEAANAEVerLQSELRQARKRRDQASEALRQAS 512
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1248 RFkanLEKNKQGLEsdnkelacEVKVLQQVKAESEHKRKKLDAQV-QELTAKVTEGERL-RVELAEKANKlqneldnvSS 1325
Cdd:pfam12128  513 RR---LEERQSALD--------ELELQLFPQAGTLLHFLRKEAPDwEQSIGKVISPELLhRTDLDPEVWD--------GS 573
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1326 LLEEAEKKGIKFAKDAASLESQLQDTQELlqeetRQKLNLSSRIRQLEEEKnnlqeqqeeeeeaRKNLEKQMLALQAQLA 1405
Cdd:pfam12128  574 VGGELNLYGVKLDLKRIDVPEWAASEEEL-----RERLDKAEEALQSAREK-------------QAAAEEQLVQANGELE 635
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1406 EAKKKVDDDLGTIEGLEENKKKLLKDMESLSqrleekamayDKLEKTKNRLQQELDDLMVDLDHQRQIvsnLEKKQKKFD 1485
Cdd:pfam12128  636 KASREETFARTALKNARLDLRRLFDEKQSEK----------DKKNKALAERKDSANERLNSLEAQLKQ---LDKKHQAWL 702
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1486 QMLAEEKnISARYAEERDRAEAEarekETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSK 1565
Cdd:pfam12128  703 EEQKEQK-REARTEKQAYWQVVE----GALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREI 777
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1566 RTLEQQVEemrtqleeledelqatedaklRLEVNMQAMkAQFERDLQardEQNEEKKRMLVKQVRELEAELEDERKQRAL 1645
Cdd:pfam12128  778 RTLERKIE---------------------RIAVRRQEV-LRYFDWYQ---ETWLQRRPRLATQLSNIERAISELQQQLAR 832
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1646 AVAAKKkmeMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQR-----ELEEARASRDEIFAQSKESEKKLKGLEAEI 1720
Cdd:pfam12128  833 LIADTK---LRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATlkedaNSEQAQGSIGERLAQLEDLKLKRDYLSESV 909
                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|
gi 45382679   1721 LQLQEEFAASERARRHAEQER--DELADEIANSASGKSALLDEKRRLEAR 1768
Cdd:pfam12128  910 KKYVEHFKNVIADHSGSGLAEtwESLREEDHYQNDKGIRLLDYRKLVPYL 959
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1393-1961 9.32e-18

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 90.20  E-value: 9.32e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1393 LEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESlsQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQ 1472
Cdd:COG0419  169 YEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEE--ELKELKKLEEIQEEQEEEELEQEIEALEERLAELEE 246
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1473 IVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLrADMEDLMSSKD 1552
Cdd:COG0419  247 EKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALL-EELEELLEKLK 325
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1553 DVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEE---KKRMLVKQV 1629
Cdd:COG0419  326 SLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQElkeELAELSAAL 405
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1630 RELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARdEAIKQLRKLQAQMKDYQRELEEArasrdeifaqskES 1709
Cdd:COG0419  406 EEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKE-LMIAELAGAGEKCPVCGQELPEE------------HE 472
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1710 EKKLKGLEAEILQLQEEFAASERARRhAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNER 1789
Cdd:COG0419  473 KELLELYELELEELEEELSREKEEAE-LREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEK 551
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1790 frKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKaKLQELEGSVKSKFKAtISTLEAKIAQLEEQLEQEAKERA 1869
Cdd:COG0419  552 --LQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELE-ELRERLKELKKKLKE-LEERLSQLEELLQSLELSEAENE 627
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1870 AANKLVRRTEK--KLKEVFMQVEDERRHADQYKEQMEKANARMKQLK------RQLEEAEEEATRANASRRKLQRELDDA 1941
Cdd:COG0419  628 LEEAEEELESEleKLNLQAELEELLQAALEELEEKVEELEAEIRRELqrieneEQLEEKLEELEQLEEELEQLREELEEL 707
                        570       580
                 ....*....|....*....|
gi 45382679 1942 TEANEGLSREVSTLKNRLRR 1961
Cdd:COG0419  708 LKKLGEIEQLIEELESRKAE 727
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1144-1769 2.74e-17

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 88.56  E-value: 2.74e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1144 IRELQAQIAELQEDLESEKAsrnkaEKQKRDLSEELEALKTELEDTldtTAAQQELRTKREQEVAELKKAieeetknhea 1223
Cdd:PRK02224  178 VERVLSDQRGSLDQLKAQIE-----EKEEKDLHERLNGLESELAEL---DEEIERYEEQREQARETRDEA---------- 239
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1224 qiQEIRQRHATALEELSEqleqakrfkanleknkqglesdnkeLACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGE 1303
Cdd:PRK02224  240 --DEVLEEHEERREELET-------------------------LEAEIEDLRETIAETEREREELAEEVRDLRERLEELE 292
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1304 RLRVELAEKANKLQNELDNVSSLLEEaekkgikFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKnnlqeqq 1383
Cdd:PRK02224  293 EERDDLLAEAGLDDADAEAVEARREE-------LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERA------- 358
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1384 eeeeearKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEEnkkkllkDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDL 1463
Cdd:PRK02224  359 -------EELREEAAELESELEEAREAVEDRREEIEELEE-------EIEELRERFGDAPVDLGNAEDFLEELREERDEL 424
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1464 MVDLDHQRQIVSNLEKKQKKFDQMLAEEKNIS-ARYAEERDRAEAEAREKETKAlslaraleealeakeeferqnkQLRA 1542
Cdd:PRK02224  425 REREAELEATLRTARERVEEAEALLEAGKCPEcGQPVEGSPHVETIEEDRERVE----------------------ELEA 482
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1543 DMEDLMSSKDDVGKNVHELEKSKRTlEQQVEEMRTQLEELEDELqatedaklrlevnmqamkAQFERDLQARDEQNEEKK 1622
Cdd:PRK02224  483 ELEDLEEEVEEVEERLERAEDLVEA-EDRIERLEERREDLEELI------------------AERRETIEEKRERAEELR 543
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1623 rmlvKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIeAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEI 1702
Cdd:PRK02224  544 ----ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL-AELKERIESLERIRTLLAAIADAEDEIERLREKREAL 618
                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 45382679  1703 FAQSKESEKKLKGLEAEILQLQEEFaasERARRHAEQERDELADEIANSASGKSALLDEKR-RLEARI 1769
Cdd:PRK02224  619 AELNDERRERLAEKRERKRELEAEF---DEARIEEAREDKERAEEYLEQVEEKLDELREERdDLQAEI 683
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
1008-1597 4.76e-17

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 87.38  E-value: 4.76e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1008 EAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKA 1087
Cdd:TIGR04523   67 EEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTE 146
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1088 KRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEEL---QAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKAS 1164
Cdd:TIGR04523  147 IKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKlniQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQ 226
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1165 RNKAEKQKRDLSEELEALKTELEDTldttaAQQELRTKREQEvaELKKAIEEETKnheaqiqeirqrhataleelseQLE 1244
Cdd:TIGR04523  227 NNQLKDNIEKKQQEINEKTTEISNT-----QTQLNQLKDEQN--KIKKQLSEKQK----------------------ELE 277
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1245 QAKRFKANLEKNKQGLESdnkelacEVKVLQQVKAESEHKR-----KKLDAQVQELTAKVTEGERLRVELAEKANKLQNE 1319
Cdd:TIGR04523  278 QNNKKIKELEKQLNQLKS-------EISDLNNQKEQDWNKElkselKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKE 350
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1320 LDNVSSlleEAEKKGIKFAKDAASLESQLQDTQELLQEetrqKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLA 1399
Cdd:TIGR04523  351 LTNSES---ENSEKQRELEEKQNEIEKLKKENQSYKQE----IKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL 423
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1400 LQAQLAEAKKKVDDDLGTIEGLEENK-------KKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQ 1472
Cdd:TIGR04523  424 LEKEIERLKETIIKNNSEIKDLTNQDsvkeliiKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNE 503
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1473 IVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNK--QLRADMEDLMSS 1550
Cdd:TIGR04523  504 EKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEieELKQTQKSLKKK 583
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*..
gi 45382679   1551 KDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLE 1597
Cdd:TIGR04523  584 QEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLS 630
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
1021-1833 7.63e-17

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 87.46  E-value: 7.63e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1021 LEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLkkeEKTRQELEKAKrkldgetTDLQD 1100
Cdd:pfam15921   94 LNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQL---QNTVHELEAAK-------CLKED 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1101 QIAELQAQIEELKIQLAKKE---EELQAALARGDEEAVQK---NNALKVI--RELQAQIAELQEDLESEKASrnkAEKQK 1172
Cdd:pfam15921  164 MLNDSNTQIEQLRKMMLSHEgvlQEIRSILVDFEEASGKKiyeHDSMSTIhfRSLGSAISKILRELDTEISY---LKGRI 240
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1173 RDLSEELEALKTELEDTLDTTAAQQELRtkreqevaelkkaIEEETKNHEAQIQEIRQRHATALEE---LSEQL----EQ 1245
Cdd:pfam15921  241 FPVEDQLEALKSESQNKIELLLQQHQDR-------------IEQLISEHEVEITGLTEKASSARSQansIQSQLeiiqEQ 307
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1246 AKRFKANLEKNKQGLESDNKELACEvkvLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSS 1325
Cdd:pfam15921  308 ARNQNSMYMRQLSDLESTVSQLRSE---LREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLA 384
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1326 LLEEAEKKgikfakdaasLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARK----NLEKQMLALQ 1401
Cdd:pfam15921  385 DLHKREKE----------LSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSecqgQMERQMAAIQ 454
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1402 AQlAEAKKKVDDDLGTIEGLEENKKKLLKDmeslsqrLEEKAMAYDKLEKTknrlqqeLDDLMVDLDHQRQIV----SNL 1477
Cdd:pfam15921  455 GK-NESLEKVSSLTAQLESTKEMLRKVVEE-------LTAKKMTLESSERT-------VSDLTASLQEKERAIeatnAEI 519
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1478 EKKQKKFDQMLAEEKNISaryaEERDRAEAEAREKETKALSLARALEEALEakeeferqnkqLRADMEDLMSSKDDVGKN 1557
Cdd:pfam15921  520 TKLRSRVDLKLQELQHLK----NEGDHLRNVQTECEALKLQMAEKDKVIEI-----------LRQQIENMTQLVGQHGRT 584
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1558 VHELEKSKRTLEQQVEEMRTQLEELEdELQATEDAKLrlevnmqamkaqfeRDLQARDEQNEEKKRMLVKQVRELEAELE 1637
Cdd:pfam15921  585 AGAMQVEKAQLEKEINDRRLELQEFK-ILKDKKDAKI--------------RELEARVSDLELEKVKLVNAGSERLRAVK 649
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1638 DERKQRALAVAAKKKMEMDLKDLEGQIEAANK----ARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKL 1713
Cdd:pfam15921  650 DIKQERDQLLNEVKTSRNELNSLSEDYEVLKRnfrnKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVA 729
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1714 KGLEAEIlqlqeefaASERARRHAEQERDELADE-IANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRK 1792
Cdd:pfam15921  730 MGMQKQI--------TAKRGQIDALQSKIQFLEEaMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERR 801
                          810       820       830       840
                   ....*....|....*....|....*....|....*....|..
gi 45382679   1793 ttLQVDTLNSELAGERSAAQKSEnARQQLERQNKE-LKAKLQ 1833
Cdd:pfam15921  802 --LKEKVANMEVALDKASLQFAE-CQDIIQRQEQEsVRLKLQ 840
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1030-1625 2.29e-16

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 85.48  E-value: 2.29e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1030 KEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQEL-----------------EKAKRKLD 1092
Cdd:PRK02224  199 KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELetleaeiedlretiaetEREREELA 278
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1093 GETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQK 1172
Cdd:PRK02224  279 EEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERA 358
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1173 RDLSEELEALKTELEDTldttaaqQELRTKREQEVAELKKAIEEETKnheaqiqeirqrhatALEELSEQLEQAKRFKAN 1252
Cdd:PRK02224  359 EELREEAAELESELEEA-------REAVEDRREEIEELEEEIEELRE---------------RFGDAPVDLGNAEDFLEE 416
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1253 LEKNKQGLESDNKELACEVKVLQQVKAESEhkrKKLDA-QVQELTAKVTEGERLRV--ELAEKANKLQNELDNVSSLLEE 1329
Cdd:PRK02224  417 LREERDELREREAELEATLRTARERVEEAE---ALLEAgKCPECGQPVEGSPHVETieEDRERVEELEAELEDLEEEVEE 493
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1330 AEKKgIKFAKDAASLESQLQDTQEllqeetrQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKK 1409
Cdd:PRK02224  494 VEER-LERAEDLVEAEDRIERLEE-------RREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEE 565
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1410 KVDDDLGTIEGLEenkkkllkdmeslsQRLEEKAMAYDKLEKtknrlqqeLDDLMVDLDHQRQIVSNLEKKQKKFDQMLA 1489
Cdd:PRK02224  566 EAEEAREEVAELN--------------SKLAELKERIESLER--------IRTLLAAIADAEDEIERLREKREALAELND 623
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1490 EEKNisaRYAEERDRAEAEAREKETKALSlaraleealeakeeferqnkQLRADMEDLMSSKDDVGKNVHELEKSKRTLE 1569
Cdd:PRK02224  624 ERRE---RLAEKRERKRELEAEFDEARIE--------------------EAREDKERAEEYLEQVEEKLDELREERDDLQ 680
                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 45382679  1570 QQ---VEEMRTQLEELEDELQATEDAKLRLEV------NMQAMKAQFERDLQARDEqnEEKKRML 1625
Cdd:PRK02224  681 AEigaVENELEELEELRERREALENRVEALEAlydeaeELESMYGDLRAELRQRNV--ETLERML 743
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
1016-1747 2.60e-16

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 85.41  E-value: 2.60e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1016 EEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEeeKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKaKRKLDGET 1095
Cdd:TIGR00618  179 TQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPC--MPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQ-KREAQEEQ 255
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1096 TDLQDQIAELQAQIEELKIQLAKKEE-----ELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEK 1170
Cdd:TIGR00618  256 LKKQQLLKQLRARIEELRAQEAVLEEtqeriNRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1171 QKRDLSEELEALKTELedtldttaaQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEEL---SEQLEQAK 1247
Cdd:TIGR00618  336 QQSSIEEQRRLLQTLH---------SQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLqslCKELDILQ 406
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1248 RFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNeLDNVSSLL 1327
Cdd:TIGR00618  407 REQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQT-KEQIHLQE 485
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1328 EEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEeknnLQEQQEEEEEARKNLEKQMLALQAQLAEA 1407
Cdd:TIGR00618  486 TRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQR----GEQTYAQLETSEEDVYHQLTSERKQRASL 561
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1408 KKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQrQIVSNLEKKQKKFDQM 1487
Cdd:TIGR00618  562 KEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPE-QDLQDVRLHLQQCSQE 640
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1488 LAEEKNISARYAEERdraeaeAREKETKALSLARALEEaleakeeferQNKQLRADMEDLMSSKddvgknVHELEKSKRT 1567
Cdd:TIGR00618  641 LALKLTALHALQLTL------TQERVREHALSIRVLPK----------ELLASRQLALQKMQSE------KEQLTYWKEM 698
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1568 LEQQVEEMRTQLEELEdelqatEDAKLRLEVNMQAMKAQfeRDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAV 1647
Cdd:TIGR00618  699 LAQCQTLLRELETHIE------EYDREFNEIENASSSLG--SDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEV 770
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1648 AAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEK----KLKGLEAEILQL 1723
Cdd:TIGR00618  771 TAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLsrleEKSATLGEITHQ 850
                          730       740
                   ....*....|....*....|....
gi 45382679   1724 QEEFAASERARRHAEQERDELADE 1747
Cdd:TIGR00618  851 LLKYEECSKQLAQLTQEQAKIIQL 874
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
890-1546 7.09e-16

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 84.00  E-value: 7.09e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    890 EELMKVKEKQTKVEAELEEMERKHQqllEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHD----------LE 959
Cdd:pfam05483   85 KEAEKIKKWKVSIEAELKQKENKLQ---ENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKEnnatrhlcnlLK 161
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    960 SRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLE----KVTAEAKIKKMEEEILLLEDQNSKFLKEKklm 1035
Cdd:pfam05483  162 ETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQaenaRLEMHFKLKEDHEKIQHLEEEYKKEINDK--- 238
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1036 EDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTD----LQDQIAELQAQIEE 1111
Cdd:pfam05483  239 EKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDikmsLQRSMSTQKALEED 318
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1112 LKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLD 1191
Cdd:pfam05483  319 LQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTK 398
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1192 TTAAQ----QELRT-----------------------KREQEVAELKKAIEEETKNHEAQIQEIR---QRHATALEELSE 1241
Cdd:pfam05483  399 FKNNKevelEELKKilaedeklldekkqfekiaeelkGKEQELIFLLQAREKEIHDLEIQLTAIKtseEHYLKEVEDLKT 478
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1242 QLEQAKRFKANLEKNKQGLESDNKEL-------ACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEgerLRVELAEKAN 1314
Cdd:pfam05483  479 ELEKEKLKNIELTAHCDKLLLENKELtqeasdmTLELKKHQEDIINCKKQEERMLKQIENLEEKEMN---LRDELESVRE 555
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1315 KLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLE 1394
Cdd:pfam05483  556 EFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYE 635
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1395 KQMLALQAQLAEAKKKVDDDLGTIEGLEENKK----KLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQ 1470
Cdd:pfam05483  636 IKVNKLELELASAKQKFEEIIDNYQKEIEDKKiseeKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQ 715
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679   1471 rqivsnLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMED 1546
Cdd:pfam05483  716 ------YDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1087-1462 1.54e-15

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 83.19  E-value: 1.54e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1087 AKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRN 1166
Cdd:TIGR02169  661 APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE 740
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1167 KAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIE----EETKNHEAQIQEIRQRHATALEELSEQ 1242
Cdd:TIGR02169  741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLShsriPEIQAELSKLEEEVSRIEARLREIEQK 820
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1243 LEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDN 1322
Cdd:TIGR02169  821 LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE 900
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1323 VSSLLEEAEKKgikfAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEK----QML 1398
Cdd:TIGR02169  901 LERKIEELEAQ----IEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAlepvNML 976
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 45382679   1399 ALQaQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAM-AYDKLEKTKNRLQQELDD 1462
Cdd:TIGR02169  977 AIQ-EYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMeAFEAINENFNEIFAELSG 1040
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
878-1308 1.63e-15

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 82.80  E-value: 1.63e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   878 VTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETEL----FAEAEEMRARLAAKKQELEE 953
Cdd:PRK03918  326 IEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLtgltPEKLEKELEELEKAKEEIEE 405
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   954 ILHDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEakIKKMEEEILLLEDQNSKFLKEKK 1033
Cdd:PRK03918  406 EISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAE--LKRIEKELKEIEEKERKLRKELR 483
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1034 LMEDRIAEcTSQLAEEEEKAKNLAKLKNK-QEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQdQIAELQAQIEEL 1112
Cdd:PRK03918  484 ELEKVLKK-ESELIKLKELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAEL 561
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1113 KIQLAKKEEELQAALARGDEEavqknnALKVIRELQAQIAELqEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDT 1192
Cdd:PRK03918  562 EKKLDELEEELAELLKELEEL------GFESVEELEERLKEL-EPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEE 634
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1193 TA-AQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLEsDNKELACEV 1271
Cdd:PRK03918  635 LAeTEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE-EREKAKKEL 713
                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 45382679  1272 KVLQQVKAESEHKRKKldaqVQELTAKVTEGERLRVE 1308
Cdd:PRK03918  714 EKLEKALERVEELREK----VKKYKALLKERALSKVG 746
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
882-1468 2.03e-15

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 82.38  E-value: 2.03e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    882 EEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKnilaEQLQAETELFaeaeemrarlaakKQELEEILHDLESR 961
Cdd:TIGR04523  130 EKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQK----EELENELNLL-------------EKEKLNIQKNIDKI 192
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    962 VEEEEERNQILQNEKKKMQGH------IQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEkklm 1035
Cdd:TIGR04523  193 KNKLLKLELLLSNLKKKIQKNkslesqISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQ---- 268
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1036 edrIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEErlKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQ 1115
Cdd:TIGR04523  269 ---LSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN--QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQ 343
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1116 LAKKEEELQAALARG---DEEAVQKNNALKVIRELQAQIAELQEDLESEKASRN----KAEKQKRDLSEELEALKTELED 1188
Cdd:TIGR04523  344 ISQLKKELTNSESENsekQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLEskiqNQEKLNQQKDEQIKKLQQEKEL 423
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1189 TLDTTAAQQELRTKREQEVAELKKAI---EEETKNHEAQIQEIRQrhataleELSEQLEQAKRFKANLEKNKQGLESDNK 1265
Cdd:TIGR04523  424 LEKEIERLKETIIKNNSEIKDLTNQDsvkELIIKNLDNTRESLET-------QLKVLSRSINKIKQNLEQKQKELKSKEK 496
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1266 ELacevKVLQQVKAESEHKRKKLDAQVQELTAKVtegERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLE 1345
Cdd:TIGR04523  497 EL----KKLNEEKKELEEKVKDLTKKISSLKEKI---EKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKE 569
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1346 -SQLQDTQELLQEETRQKLNLssrIRQLEEEKNNLQEQQEeeeearkNLEKQMLALQAQLAEAKKKVdddlgtiEGLEEN 1424
Cdd:TIGR04523  570 iEELKQTQKSLKKKQEEKQEL---IDQKEKEKKDLIKEIE-------EKEKKISSLEKELEKAKKEN-------EKLSSI 632
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....
gi 45382679   1425 KKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLD 1468
Cdd:TIGR04523  633 IKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKID 676
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1274-1960 2.36e-15

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 82.42  E-value: 2.36e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1274 LQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVEL--AEKANKLQNELDNV-----SSLLEEAEKKGIKFAKDAASLES 1346
Cdd:TIGR02169  172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRRERekAERYQALLKEKREYegyelLKEKEALERQKEAIERQLASLEE 251
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1347 QLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEAR-KNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENK 1425
Cdd:TIGR02169  252 ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKiGELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1426 KKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLmvdldhqrqiVSNLEKKQKKFDQMLAEEKnisaryaEERDRA 1505
Cdd:TIGR02169  332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL----------RAELEEVDKEFAETRDELK-------DYREKL 394
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1506 EAEAREKEtkalSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDE 1585
Cdd:TIGR02169  395 EKLKREIN----ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1586 LQATEDAKLRLEVNMQAMKAQFERdLQARDEQNEEKKRMLVKQVRELEAELE------------DERKQRALAVAAKKKM 1653
Cdd:TIGR02169  471 LYDLKEEYDRVEKELSKLQRELAE-AEAQARASEERVRGGRAVEEVLKASIQgvhgtvaqlgsvGERYATAIEVAAGNRL 549
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1654 EMDLKDLEGQIEaankardEAIKQLRKLQA---------QMKDYQRELEEAR------------------------ASRD 1700
Cdd:TIGR02169  550 NNVVVEDDAVAK-------EAIELLKRRKAgratflplnKMRDERRDLSILSedgvigfavdlvefdpkyepafkyVFGD 622
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1701 EIFAQSKESEKKLKG------LEAEILQ---------LQEEFAASERARRHAEQERdeLADEIANSASGKSALLDEKRRL 1765
Cdd:TIGR02169  623 TLVVEDIEAARRLMGkyrmvtLEGELFEksgamtggsRAPRGGILFSRSEPAELQR--LRERLEGLKRELSSLQSELRRI 700
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1766 EARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEgSVKSKFKA 1845
Cdd:TIGR02169  701 ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE-EDLHKLEE 779
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1846 TISTLEAKIA-----QLEEQLEQEAKERAAANKLVRRTEKKLKEVFMQVEDERRHADQYKEQMEKANARMKQLKRQLEEA 1920
Cdd:TIGR02169  780 ALNDLEARLShsripEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|
gi 45382679   1921 EEEATRANASRRKLQRELDDATEANEGLSREVSTLKNRLR 1960
Cdd:TIGR02169  860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
1001-1598 3.29e-15

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 82.07  E-value: 3.29e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1001 QLEKVTAEAKiKKMEeeiLLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLA--------KLKNKQEMMITDLEE 1072
Cdd:pfam15921  246 QLEALKSESQ-NKIE---LLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQsqleiiqeQARNQNSMYMRQLSD 321
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1073 RLKKEEKTRQELEKAKRKLDGettdlqdqiaelqaQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIA 1152
Cdd:pfam15921  322 LESTVSQLRSELREAKRMYED--------------KIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLH 387
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1153 ELQEDLESEKASRNKAEKQKRDLSEELEALKTELED------TLDT--TAAQQELRTKREQEVAELKKAIE--EETKNHE 1222
Cdd:pfam15921  388 KREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDrnmevqRLEAllKAMKSECQGQMERQMAAIQGKNEslEKVSSLT 467
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1223 AQIQEIRQRHATALEELSEQ---LEQAKR----FKANLEKNKQGLESDNKELA-------CEVKVLQQVKAESEHKRkkl 1288
Cdd:pfam15921  468 AQLESTKEMLRKVVEELTAKkmtLESSERtvsdLTASLQEKERAIEATNAEITklrsrvdLKLQELQHLKNEGDHLR--- 544
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1289 daQVQeltakvTEGERLRVELAEKANK---LQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNL 1365
Cdd:pfam15921  545 --NVQ------TECEALKLQMAEKDKVieiLRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK 616
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1366 SSRIRQLEEEKNNLQEQQEEEEEARknlEKQMLALQaqlaEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAma 1445
Cdd:pfam15921  617 DAKIRELEARVSDLELEKVKLVNAG---SERLRAVK----DIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKS-- 687
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1446 yDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ-KKFDQMLAEEKNISARyaeerdRAEAEAREKETKALSLAraLE 1524
Cdd:pfam15921  688 -EEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDgHAMKVAMGMQKQITAK------RGQIDALQSKIQFLEEA--MT 758
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1525 EALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRT-------QLEELEDELQATEDAKLRLE 1597
Cdd:pfam15921  759 NANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEValdkaslQFAECQDIIQRQEQESVRLK 838

                   .
gi 45382679   1598 V 1598
Cdd:pfam15921  839 L 839
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1311-1885 6.61e-15

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 80.88  E-value: 6.61e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1311 EKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEAR 1390
Cdd:PRK03918  158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK 237
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1391 KNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKL--LKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLD 1468
Cdd:PRK03918  238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIeeLEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLS 317
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1469 HQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAeaREKETKALSLARALEEaleakeeferQNKQLRADMEDLm 1548
Cdd:PRK03918  318 RLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEE--LEERHELYEEAKAKKE----------ELERLKKRLTGL- 384
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1549 sSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEvnmqamKAQFERDLQARDEQNEEKKRMLvkq 1628
Cdd:PRK03918  385 -TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK------KAKGKCPVCGRELTEEHRKELL--- 454
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1629 vRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKAR--DEAIKQLRKLQAQMKDYQRE-LEEARASRDEIFAQ 1705
Cdd:PRK03918  455 -EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIklKELAEQLKELEEKLKKYNLEeLEKKAEEYEKLKEK 533
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1706 SKESEKKLKGLEAEILQLQE---EFAASERARRHAEQERDELADEIANSASGKSALLDEK-------------------- 1762
Cdd:PRK03918  534 LIKLKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKELEELGFESVEELEERlkelepfyneylelkdaeke 613
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1763 -RRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGErsaaqKSENARQQLERQNKELKAKLQELEGsVKS 1841
Cdd:PRK03918  614 lEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE-----EYEELREEYLELSRELAGLRAELEE-LEK 687
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....
gi 45382679  1842 KFKATISTLeakiaqleEQLEQEAKERAAANKLVRRTEKKLKEV 1885
Cdd:PRK03918  688 RREEIKKTL--------EKLKEELEEREKAKKELEKLEKALERV 723
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
1161-1906 6.98e-15

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 80.79  E-value: 6.98e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1161 EKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELS 1240
Cdd:pfam02463  170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDE 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1241 EQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKAN-KLQNE 1319
Cdd:pfam02463  250 QEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKkKAEKE 329
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1320 LDNVSSLLEEAEKKGIKFAKDAASLESQLQDtQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLA 1399
Cdd:pfam02463  330 LKKEKEEIEELEKELKELEIKREAEEEEEEE-LEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQ 408
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1400 LQAQLAEAKKKVDDDLGTIEglEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEK 1479
Cdd:pfam02463  409 LLLELARQLEDLLKEEKKEE--LEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQL 486
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1480 KQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEferqnKQLRADMEDLMSSKDDVGKNVH 1559
Cdd:pfam02463  487 ELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVE-----NYKVAISTAVIVEVSATADEVE 561
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1560 ELEKSKRTLEQQVEEMRTQLEELEDELqateDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDE 1639
Cdd:pfam02463  562 ERQKLVRALTELPLGARKLRLLIPKLK----LPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKL 637
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1640 RKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFA---QSKESEKKLKGL 1716
Cdd:pfam02463  638 KESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKkkeQREKEELKKLKL 717
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1717 EAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTL- 1795
Cdd:pfam02463  718 EAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLk 797
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1796 -QVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEGSVKSKFKATISTLEAKIAQLEEQLEQEAKERAAAnKL 1874
Cdd:pfam02463  798 aQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLL-KE 876
                          730       740       750
                   ....*....|....*....|....*....|..
gi 45382679   1875 VRRTEKKLKEVFMQVEDERRHADQYKEQMEKA 1906
Cdd:pfam02463  877 EELEEQKLKDELESKEEKEKEEKKELEEESQK 908
PTZ00121 PTZ00121
MAEBL; Provisional
834-1480 1.91e-14

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 79.80  E-value: 1.91e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   834 RKAFAKKQQQLSALKILQRNCAAYLKLRHWQWWRVFTKVKPLLQVTRQEEELQAKDEELMKVKEKQTKVEaeleemERKH 913
Cdd:PTZ00121 1372 KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE------EAKK 1445
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   914 QQLLEEKnilAEQLQAETELFAEAEEMRARLAAKKQELEeilhdlesrveeeeernqilqnekkkmqghiqdleeqldee 993
Cdd:PTZ00121 1446 ADEAKKK---AEEAKKAEEAKKKAEEAKKADEAKKKAEE----------------------------------------- 1481
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   994 egARQKLQLEKVTAEAkiKKMEEEILLLEDQNSKFLKEKKLMEDRIAEcTSQLAEEEEKAKNLAKLKNKQEMMITDLEER 1073
Cdd:PTZ00121 1482 --AKKADEAKKKAEEA--KKKADEAKKAAEAKKKADEAKKAEEAKKAD-EAKKAEEAKKADEAKKAEEKKKADELKKAEE 1556
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1074 LKKEEKTRQELEKAKRKldgETTDLQDQIAELQAQIEELKIQ----LAKKEEELQAALARGDEEAVQKNNALKVIRELQA 1149
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAE---EDKNMALRKAEEAKKAEEARIEevmkLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1150 QIAELQEDLESEKasrNKAEKQKRdlSEELEALKTELEdtldttaAQQELRTKREQEvaELKKAIEEETKNHEAQIQEir 1229
Cdd:PTZ00121 1634 KVEQLKKKEAEEK---KKAEELKK--AEEENKIKAAEE-------AKKAEEDKKKAE--EAKKAEEDEKKAAEALKKE-- 1697
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1230 qrhatalEELSEQLEQAKRFKAnlEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKvtEGERLRVEL 1309
Cdd:PTZ00121 1698 -------AEEAKKAEELKKKEA--EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK--KIAHLKKEE 1766
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1310 AEKANKLQNELDNV--SSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEET----RQKLNLSSRIRQLEEEKN---NLQ 1380
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVieEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNlvinDSKEMEDSAIKEVADSKNmqlEEA 1846
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1381 EQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESlsqRLEEKAMAYDKLEKTKNRLQQEl 1460
Cdd:PTZ00121 1847 DAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIER---EIPNNNMAGKNNDIIDDKLDKD- 1922
                         650       660
                  ....*....|....*....|
gi 45382679  1461 DDLMVDLDHQRQIVSNLEKK 1480
Cdd:PTZ00121 1923 EYIKRDAEETREEIIKISKK 1942
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
845-1395 2.46e-14

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 79.03  E-value: 2.46e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  845 SALKILQRNCAAYLKLRHWQWWRVFTKVKPLLQVTRQEEELQAKDEELMKVK---EKQTKVEAELEEMERKHQQLLEEKN 921
Cdd:COG0419  246 EEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEreiEELEEELEGLRALLEELEELLEKLK 325
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  922 ILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESrveeeeernqilqnekkkmqghiqdleeqldeeegarqKLQ 1001
Cdd:COG0419  326 SLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLK--------------------------------------ELE 367
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1002 LEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTR 1081
Cdd:COG0419  368 ERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKE 447
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1082 QELEKAKRKLDGETTDLQDQIAELQAQIEELkiqLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESE 1161
Cdd:COG0419  448 LMIAELAGAGEKCPVCGQELPEEHEKELLEL---YELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELE 524
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1162 KASRNKAEKQKRDLSEELEALKTELEDTLdtTAAQQELRTKREQEVAELKKAIEEETKN--HEAQIQEIRQRhataLEEL 1239
Cdd:COG0419  525 EALKEELEEKLEKLENLLEELEELKEKLQ--LQQLKEELRQLEDRLQELKELLEELRLLrtRKEELEELRER----LKEL 598
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1240 SEQLEQAKRFKANLEKNKQGLESDNKELAcevkvLQQVKAESEHKRKKLDAQVQELTAKvtegERLRVELAEKANKLQNE 1319
Cdd:COG0419  599 KKKLKELEERLSQLEELLQSLELSEAENE-----LEEAEEELESELEKLNLQAELEELL----QAALEELEEKVEELEAE 669
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679 1320 LDNVSSLLEEaEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEK 1395
Cdd:COG0419  670 IRRELQRIEN-EEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALEL 744
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
871-1332 2.75e-14

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 78.57  E-value: 2.75e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   871 KVKPLLQVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQE 950
Cdd:PRK03918  274 EIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKR 353
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   951 LEEILHDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEdqnsKFLK 1030
Cdd:PRK03918  354 LEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELK----KAIE 429
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1031 EKKLMEDRIAECTSQLAEEEEKaknlaKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIA--ELQAQ 1108
Cdd:PRK03918  430 ELKKAKGKCPVCGRELTEEHRK-----ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKlkELAEQ 504
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1109 IEELKIQLAKKEEELQAALARGDEEAVQKnnalkvIRELQAQIAELQEDLESEKASRNKA---EKQKRDLSEELEALKTE 1185
Cdd:PRK03918  505 LKELEEKLKKYNLEELEKKAEEYEKLKEK------LIKLKGEIKSLKKELEKLEELKKKLaelEKKLDELEEELAELLKE 578
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1186 LEDTLDTTAAQQELRTKreqevaELKKAIEE--ETKNHEAQIQEIRQRhataLEELSEQLEQAkrfkanlEKNKQGLESD 1263
Cdd:PRK03918  579 LEELGFESVEELEERLK------ELEPFYNEylELKDAEKELEREEKE----LKKLEEELDKA-------FEELAETEKR 641
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679  1264 NKELACEVKVLQQVKAESEHKRK-----KLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEK 1332
Cdd:PRK03918  642 LEELRKELEELEKKYSEEEYEELreeylELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
1010-1836 2.99e-14

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 78.94  E-value: 2.99e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1010 KIKKMEEEILLLEDQNSKFLKEKKLMEDRiaecTSQLAEEEEKA-----KNLAKLKNKQEMMITDLEERLKKEEKTRQEL 1084
Cdd:TIGR00606  256 EIEHNLSKIMKLDNEIKALKSRKKQMEKD----NSELELKMEKVfqgtdEQLNDLYHNHQRTVREKERELVDCQRELEKL 331
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1085 EKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQA--------ALARGDEEAVQKNNALKVIRELQAQIAELQE 1156
Cdd:TIGR00606  332 NKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSlatrleldGFERGPFSERQIKNFHTLVIERQEDEAKTAA 411
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1157 DLESEKASRNK-AEKQKRDLSEELEALKTELE-DTLDTTAAQQELRTKR---EQEVAELKKAIEEETKNHEAQIQEIRQR 1231
Cdd:TIGR00606  412 QLCADLQSKERlKQEQADEIRDEKKGLGRTIElKKEILEKKQEELKFVIkelQQLEGSSDRILELDQELRKAERELSKAE 491
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1232 HATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESehkRKKLDAQVQELTAKVTEGERLRVELAE 1311
Cdd:TIGR00606  492 KNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT---KDKMDKDEQIRKIKSRHSDELTSLLGY 568
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1312 KANK--LQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRI------RQLEEEKNNLQEQQ 1383
Cdd:TIGR00606  569 FPNKkqLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEI 648
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1384 EEEEEARKNLEKQMLALQAQLAEAKKK-------VDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRL 1456
Cdd:TIGR00606  649 EKSSKQRAMLAGATAVYSQFITQLTDEnqsccpvCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEM 728
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1457 QQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQ 1536
Cdd:TIGR00606  729 LGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKI 808
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1537 NKQL-RADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNmqamKAQFERDLQARd 1615
Cdd:TIGR00606  809 AQQAaKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSE----KLQIGTNLQRR- 883
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1616 EQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKardeaikqlrKLQAQMKDYQRELEEA 1695
Cdd:TIGR00606  884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNK----------KAQDKVNDIKEKVKNI 953
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1696 RASRDEIFAQSKES-EKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEE 1774
Cdd:TIGR00606  954 HGYMKDIENKIQDGkDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEV 1033
                          810       820       830       840       850       860
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 45382679   1775 ELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELE 1836
Cdd:TIGR00606 1034 EEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQ 1095
PTZ00121 PTZ00121
MAEBL; Provisional
1132-1950 3.24e-14

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 79.03  E-value: 3.24e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1132 EEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELK 1211
Cdd:PTZ00121 1030 EELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETG 1109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1212 KaIEEETKNHEA--QIQEIRQRHATALEELSEQLEQAKRfkanleknkqglESDNKELACEVKVLQQVKAESehKRKKLD 1289
Cdd:PTZ00121 1110 K-AEEARKAEEAkkKAEDARKAEEARKAEDARKAEEARK------------AEDAKRVEIARKAEDARKAEE--ARKAED 1174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1290 AQVQELTAKVTEGER-LRVELAEKANKLQ--NELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEEtrqKLNLS 1366
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKaEELRKAEDARKAEaaRKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAE---EERNN 1251
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1367 SRIRQLEEEKNNLQEQQEEEEEArknlEKQMLALQAQLAEAKKKVDddlgtieglEENKKKLLKDMESLSQRLEEKAMAy 1446
Cdd:PTZ00121 1252 EEIRKFEEARMAHFARRQAAIKA----EEARKADELKKAEEKKKAD---------EAKKAEEKKKADEAKKKAEEAKKA- 1317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1447 DKLEKTKNRLQQELDDLMvdldhqrqivSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETkalslARALEEA 1526
Cdd:PTZ00121 1318 DEAKKKAEEAKKKADAAK----------KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE-----AKKKADA 1382
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1527 LEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRtLEQQVEEMRT--QLEELEDELQATEDAKLRLEvnmqamk 1604
Cdd:PTZ00121 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE-AKKKAEEKKKadEAKKKAEEAKKADEAKKKAE------- 1454
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1605 aqferdlQARDEQNEEKKRMLVKQVRELEAELEDERKqralAVAAKKKMEMDLKDLEgQIEAANKARDEAIKQLRKLQAQ 1684
Cdd:PTZ00121 1455 -------EAKKAEEAKKKAEEAKKADEAKKKAEEAKK----ADEAKKKAEEAKKKAD-EAKKAAEAKKKADEAKKAEEAK 1522
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1685 MKDYQRELEEARASRDEIFAQSKESEKKLKglEAEILQLQEEFAASERARRhAEQERDELADEIANSASGKSALLDEKRR 1764
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKKKADELK--KAEELKKAEEKKKAEEAKK-AEEDKNMALRKAEEAKKAEEARIEEVMK 1599
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1765 LEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSAAQKSENARQQlERQNKELKAKLQELEGSVKSKFK 1844
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA-EEENKIKAAEEAKKAEEDKKKAE 1678
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1845 ATISTLEAKiAQLEEQLEQEAKERAAANKLVRRTEKKLK----------EVFMQVEDERRHADQYKEQMEKANARMKQLK 1914
Cdd:PTZ00121 1679 EAKKAEEDE-KKAAEALKKEAEEAKKAEELKKKEAEEKKkaeelkkaeeENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
                         810       820       830
                  ....*....|....*....|....*....|....*.
gi 45382679  1915 RQLEEAEEEATRANASRRKLQRELDDATEANEGLSR 1950
Cdd:PTZ00121 1758 KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
881-1724 3.51e-14

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 78.55  E-value: 3.51e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    881 QEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNIlAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLES 960
Cdd:TIGR00606  198 QGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREI-VKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKS 276
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    961 RVEEEEERN-QILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEK---KLME 1036
Cdd:TIGR00606  277 RKKQMEKDNsELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQgrlQLQA 356
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1037 DRIAE-------------CTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIA 1103
Cdd:TIGR00606  357 DRHQEhirardsliqslaTRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKK 436
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1104 ELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELqedlesEKASRNKAEKQKRDLSEELEALK 1183
Cdd:TIGR00606  437 GLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAEREL------SKAEKNSLTETLKKEVKSLQNEK 510
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1184 TELEDTLDTTAAQQElRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKA---NLEKNKQGL 1260
Cdd:TIGR00606  511 ADLDRKLRKLDQEME-QLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDwlhSKSKEINQT 589
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1261 ESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEgerlrvelAEKANKLQNELDNVSSLLEEAEKKGIKFAKD 1340
Cdd:TIGR00606  590 RDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFD--------VCGSQDEESDLERLKEEIEKSSKQRAMLAGA 661
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1341 AASLESQLQDTQE-------LLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDD 1413
Cdd:TIGR00606  662 TAVYSQFITQLTDenqsccpVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDL 741
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1414 DLGTIEGLEENKKKLLKDMESLSQRLEEKamayDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKN 1493
Cdd:TIGR00606  742 KEKEIPELRNKLQKVNRDIQRLKNDIEEQ----ETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQG 817
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1494 ISARYAEERDRAEAEarEKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHEleksKRTLEQQVE 1573
Cdd:TIGR00606  818 SDLDRTVQQVNQEKQ--EKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQR----RQQFEEQLV 891
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1574 EMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQN---EEKKRMLVKQVRELEAELED-ERKQRALAVAA 1649
Cdd:TIGR00606  892 ELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNkkaQDKVNDIKEKVKNIHGYMKDiENKIQDGKDDY 971
                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679   1650 KKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQM--KDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQ 1724
Cdd:TIGR00606  972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIdtQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ 1048
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
875-1623 4.05e-14

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 78.47  E-value: 4.05e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    875 LLQVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETEL----FAEAEEMRARLAAKKQE 950
Cdd:pfam02463  288 LKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKEleikREAEEEEEEELEKLQEK 367
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    951 LEEILHDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEG-ARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFL 1029
Cdd:pfam02463  368 LEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLElARQLEDLLKEEKKEELEILEEEEESIELKQGKLT 447
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1030 KEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGettdlqdqiaeLQAQI 1109
Cdd:pfam02463  448 EEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKV-----------LLALI 516
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1110 EELKIQLAKKEEELQAALARGDE-EAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELED 1188
Cdd:pfam02463  517 KDGVGGRIISAHGRLGDLGVAVEnYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAV 596
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1189 TLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELA 1268
Cdd:pfam02463  597 LEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELL 676
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1269 CEVKVLQQVKAESEHKRKKLDAQVQELTA--KVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLES 1346
Cdd:pfam02463  677 EIQELQEKAESELAKEEILRRQLEIKKKEqrEKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSR 756
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1347 QLQDTQEllQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKK 1426
Cdd:pfam02463  757 LKKEEKE--EEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEE 834
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1427 KLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAE 1506
Cdd:pfam02463  835 LEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEE 914
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1507 AEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMsskddvgknvhELEKSKRTLEQQVEEMRTQLEELEDEL 1586
Cdd:pfam02463  915 KENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKE-----------EEEERNKRLLLAKEELGKVNLMAIEEF 983
                          730       740       750
                   ....*....|....*....|....*....|....*..
gi 45382679   1587 QATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKR 1623
Cdd:pfam02463  984 EEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLK 1020
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
1236-1890 5.90e-14

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 77.37  E-value: 5.90e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1236 LEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANK 1315
Cdd:TIGR04523   42 LKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNK 121
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1316 LQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEK 1395
Cdd:TIGR04523  122 LEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLEL 201
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1396 QMLALQAQLAEAKKKVDDdlgtIEGLEENKKKLLKDMESLSQRLEEKAmayDKLEKTKNRLQQELDDlmvdldhQRQIVS 1475
Cdd:TIGR04523  202 LLSNLKKKIQKNKSLESQ----ISELKKQNNQLKDNIEKKQQEINEKT---TEISNTQTQLNQLKDE-------QNKIKK 267
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1476 NLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKE---TKAL-SLARALEEALEAKEEFERQNKQLRADMEDLMSsk 1551
Cdd:TIGR04523  268 QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEqdwNKELkSELKNQEKKLEEIQNQISQNNKIISQLNEQIS-- 345
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1552 dDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFErdlqardeQNEEKKRMLVKQVRE 1631
Cdd:TIGR04523  346 -QLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQ--------NQEKLNQQKDEQIKK 416
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1632 LEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEK 1711
Cdd:TIGR04523  417 LQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEK 496
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1712 KLKGLEAEILQLqeefaaserarrhaEQERDELADEIansasgkSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFR 1791
Cdd:TIGR04523  497 ELKKLNEEKKEL--------------EEKVKDLTKKI-------SSLKEKIEKLESEKKEKESKISDLEDELNKDDFELK 555
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1792 KTTL--QVDTLNSELagersaaQKSENARQQLERQNKELKAKLQELEgSVKSKFKATISTLEAKIAQLEEQLEQEAKERA 1869
Cdd:TIGR04523  556 KENLekEIDEKNKEI-------EELKQTQKSLKKKQEEKQELIDQKE-KEKKDLIKEIEEKEKKISSLEKELEKAKKENE 627
                          650       660
                   ....*....|....*....|.
gi 45382679   1870 AANKLVRRTEKKLKEVFMQVE 1890
Cdd:TIGR04523  628 KLSSIIKNIKSKKNKLKQEVK 648
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
838-1463 2.85e-13

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 75.39  E-value: 2.85e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    838 AKKQQQLSALKILqRNCAAYLKLRHWQWWRVFTKVKPLLQVTRQEEELQAKDEELmkvkekqTKVEAELEEMERKHQQLL 917
Cdd:TIGR00618  219 ERKQVLEKELKHL-REALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEEL-------RAQEAVLEETQERINRAR 290
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    918 EEKNILAEQlQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGAR 997
Cdd:TIGR00618  291 KAAPLAAHI-KAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIRE 369
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    998 QKLQleKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKE 1077
Cdd:TIGR00618  370 ISCQ--QHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAI 447
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1078 EKTRQ-------ELEKAKRKLDGETTDLQDQ-----------------IAELQAQIEELKIQLAKKEEELQAA------- 1126
Cdd:TIGR00618  448 TCTAQceklekiHLQESAQSLKEREQQLQTKeqihlqetrkkavvlarLLELQEEPCPLCGSCIHPNPARQDIdnpgplt 527
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1127 --LARGDEEAVQKNNALKVIR----ELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELR 1200
Cdd:TIGR00618  528 rrMQRGEQTYAQLETSEEDVYhqltSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAE 607
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1201 TKREQEVAELKKAIEEETKN-----HEAQIQEIRQRHATALEELSEQLEQAKRFKANL---EKNKQGLESDNKELACEVK 1272
Cdd:TIGR00618  608 DMLACEQHALLRKLQPEQDLqdvrlHLQQCSQELALKLTALHALQLTLTQERVREHALsirVLPKELLASRQLALQKMQS 687
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1273 VLQQVKAESEHKRKKLDAqVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDA--ASLESQLQD 1350
Cdd:TIGR00618  688 EKEQLTYWKEMLAQCQTL-LRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVlkARTEAHFNN 766
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1351 TQELL------QEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLgtiegleEN 1424
Cdd:TIGR00618  767 NEEVTaalqtgAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRL-------EE 839
                          650       660       670
                   ....*....|....*....|....*....|....*....
gi 45382679   1425 KKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDL 1463
Cdd:TIGR00618  840 KSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
948-1724 3.01e-13

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 75.52  E-value: 3.01e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    948 KQELEEILHDLESRVEEEEER----NQILQNEKKKMQGHIQDLEEQLdeeegarQKLQLEKvTAEAKIKKME---EEILL 1020
Cdd:pfam15921   73 KEHIERVLEEYSHQVKDLQRRlnesNELHEKQKFYLRQSVIDLQTKL-------QEMQMER-DAMADIRRREsqsQEDLR 144
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1021 LEDQNS--KFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQEL------------EK 1086
Cdd:pfam15921  145 NQLQNTvhELEAAKCLKEDMLNDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMstihfrslgsaiSK 224
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1087 AKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAAlargdeeavQKNNALKVIRELQAQIAELqedleSEKASrn 1166
Cdd:pfam15921  225 ILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQ---------HQDRIEQLISEHEVEITGL-----TEKAS-- 288
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1167 KAEKQKRDLSEELEALKtelEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQA 1246
Cdd:pfam15921  289 SARSQANSIQSQLEIIQ---EQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTER 365
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1247 KRF---KANLEKNKQGLESD----NKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNE 1319
Cdd:pfam15921  366 DQFsqeSGNLDDQLQKLLADlhkrEKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQ 445
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1320 LDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQqeeeeearknlEKQMLA 1399
Cdd:pfam15921  446 MERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEK-----------ERAIEA 514
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1400 LQAQLAEAKKKVDDDLGTIEGLeENKKKLLKDMESLSQRLEEKAMAYDKLEKTknrLQQELDDLMVDLDHQRQIVSNLEK 1479
Cdd:pfam15921  515 TNAEITKLRSRVDLKLQELQHL-KNEGDHLRNVQTECEALKLQMAEKDKVIEI---LRQQIENMTQLVGQHGRTAGAMQV 590
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1480 KQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLM----SSKDDVG 1555
Cdd:pfam15921  591 EKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLnevkTSRNELN 670
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1556 KNVHELEKSKRTLEQQVEEMRTQLEELEDELQAtedAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVK--QVRELE 1633
Cdd:pfam15921  671 SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKS---AQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKrgQIDALQ 747
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1634 AELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKL 1713
Cdd:pfam15921  748 SKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDII 827
                          810
                   ....*....|.
gi 45382679   1714 KGLEAEILQLQ 1724
Cdd:pfam15921  828 QRQEQESVRLK 838
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
1007-1517 3.09e-13

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 75.24  E-value: 3.09e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1007 AEAKIKKMEeeiLLLEDQNSKFLKEKKLMEDRiaectSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEktrQELEK 1086
Cdd:pfam10174  190 AEMQLGHLE---VLLDQKEKENIHLREELHRR-----NQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLE---DEVQM 258
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1087 AKRKLDGETTDLQDQIAELQA----------QIEELKIQLAKKEEELQAALARGDEEAVQKNNA---LKVIRE------- 1146
Cdd:pfam10174  259 LKTNGLLHTEDREEEIKQMEVykshskfmknKIDQLKQELSKKESELLALQTKLETLTNQNSDCkqhIEVLKEsltakeq 338
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1147 ----LQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAqqelrtkREQEVAELKKAIE---EETK 1219
Cdd:pfam10174  339 raaiLQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDV-------KERKINVLQKKIEnlqEQLR 411
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1220 NHEAQIQEIRQRHA----------TALEELSEQLEQAKRFKANLEKNKqglESDNKELACEVKVLQQvkaesehKRKKLD 1289
Cdd:pfam10174  412 DKDKQLAGLKERVKslqtdssntdTALTTLEEALSEKERIIERLKEQR---EREDRERLEELESLKK-------ENKDLK 481
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1290 AQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELlQEETRQKLNLSSRI 1369
Cdd:pfam10174  482 EKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNA-EEAVRTNPEINDRI 560
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1370 RQLEEEknnLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKvDDDLGTIEGL------EENKKKL-LKDMESLSQR---- 1438
Cdd:pfam10174  561 RLLEQE---VARYKEESGKAQAEVERLLGILREVENEKNDK-DKKIAELESLtlrqmkEQNKKVAnIKHGQQEMKKkgaq 636
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1439 -LEEKAMAYDklEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKAL 1517
Cdd:pfam10174  637 lLEEARRRED--NLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEAL 714
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1417-1960 4.97e-13

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 74.72  E-value: 4.97e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1417 TIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNI-- 1494
Cdd:PRK03918  173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLeg 252
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1495 SARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQV-- 1572
Cdd:PRK03918  253 SKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIke 332
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1573 -EEMRTQLEELEDELQATEDAKLRLEVNMQAmkaqFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKqralavaAKK 1651
Cdd:PRK03918  333 lEEKEERLEELKKKLKELEKRLEELEERHEL----YEEAKAKKEELERLKKRLTGLTPEKLEKELEELEK-------AKE 401
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1652 KMEMDLKDLE---GQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASR--DEIFAQSKESEKKLKGLEAEILQLQEE 1726
Cdd:PRK03918  402 EIEEEISKITariGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKEllEEYTAELKRIEKELKEIEEKERKLRKE 481
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1727 FAASERARRHAEQER--DELADEIANSASGKSALLDEKRRLEARiaqleeeleeeqsNMELLNERFRKTTLQVDTLNSEL 1804
Cdd:PRK03918  482 LRELEKVLKKESELIklKELAEQLKELEEKLKKYNLEELEKKAE-------------EYEKLKEKLIKLKGEIKSLKKEL 548
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1805 agerSAAQKSENARQQLERQNKELKAKLQELEGSVKSKFKATISTLEAKIAQLEEqLEQEAKERAAANKLVRRTEKKLKE 1884
Cdd:PRK03918  549 ----EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEP-FYNEYLELKDAEKELEREEKELKK 623
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679  1885 VFMQVEDERRHADQYKEQMEKANARMKQLKRQLEEAEEEatRANASRRKLQRELDDATEANEGLSREVSTLKNRLR 1960
Cdd:PRK03918  624 LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE--ELREEYLELSRELAGLRAELEELEKRREEIKKTLE 697
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
879-1493 3.07e-12

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 71.98  E-value: 3.07e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    879 TRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDL 958
Cdd:TIGR04523   64 NKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKF 143
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    959 ESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQ-----------------LEKVTAEAKIKKMEEEILLL 1021
Cdd:TIGR04523  144 LTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQknidkiknkllklelllSNLKKKIQKNKSLESQISEL 223
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1022 EDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNlakLKNKQEMMITDLEERlkkeektRQELEKAKRKLDgettDLQDQ 1101
Cdd:TIGR04523  224 KKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQ---LKDEQNKIKKQLSEK-------QKELEQNNKKIK----ELEKQ 289
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1102 IAELQAQIEELKIQlakKEEELqaalargdeeavqknnalkvIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEA 1181
Cdd:TIGR04523  290 LNQLKSEISDLNNQ---KEQDW--------------------NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQ 346
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1182 LKTELEDTLDTTAAQQELRTKREQEVAELKKAIE---EETKNHEAQIQEIRQrhataleelseQLEQAKRFKANLEKNKQ 1258
Cdd:TIGR04523  347 LKKELTNSESENSEKQRELEEKQNEIEKLKKENQsykQEIKNLESQINDLES-----------KIQNQEKLNQQKDEQIK 415
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1259 GLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFA 1338
Cdd:TIGR04523  416 KLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKE 495
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1339 KDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQeeeeearKNLEKQMLALQAQL--AEAKKKVDDDLG 1416
Cdd:TIGR04523  496 KELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI-------SDLEDELNKDDFELkkENLEKEIDEKNK 568
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679   1417 TIEGLEENKKKLLKDMESLSQRLeekamayDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKN 1493
Cdd:TIGR04523  569 EIEELKQTQKSLKKKQEEKQELI-------DQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKS 638
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
891-1463 3.65e-12

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 72.18  E-value: 3.65e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    891 ELMKVKEKQTKVEAELEEMERKHQQLLEEKnilAEQLQAETELF----AEAEEMRARLAA---KKQELEEILHDLESRVE 963
Cdd:pfam12128  309 ELSAADAAVAKDRSELEALEDQHGAFLDAD---IETAAADQEQLpswqSELENLEERLKAltgKHQDVTAKYNRRRSKIK 385
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    964 EEEERNQILQNEKKKMQghiqdleeqldeeegaRQKLQLEKVTAEAKIKKMEEEI-LLLEDQNSKFLKEKKLMEDRIAEC 1042
Cdd:pfam12128  386 EQNNRDIAGIKDKLAKI----------------REARDRQLAVAEDDLQALESELrEQLEAGKLEFNEEEYRLKSRLGEL 449
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1043 TSQLAE---EEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQD---QIAELQAQIEELKIQL 1116
Cdd:pfam12128  450 KLRLNQataTPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQasrRLEERQSALDELELQL 529
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1117 AKKEEELQAALA------------------------------------------RGDEEAVQKNNALKVIRELQAQIAEL 1154
Cdd:pfam12128  530 FPQAGTLLHFLRkeapdweqsigkvispellhrtdldpevwdgsvggelnlygvKLDLKRIDVPEWAASEEELRERLDKA 609
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1155 QEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDT-----------TAAQQELRTKREQEVAELKKAIEEETKNHEA 1223
Cdd:pfam12128  610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTAlknarldlrrlFDEKQSEKDKKNKALAERKDSANERLNSLEA 689
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1224 QIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGlESDNKelacevkvLQQVKAESEHKRKKLDAQVQEL-TAKVTEG 1302
Cdd:pfam12128  690 QLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEG-ALDAQ--------LALLKAAIAARRSGAKAELKALeTWYKRDL 760
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1303 ERLRVElAEKANKLQNELDNVSSLLEEAEKKGikfaKDAASLESQLQDTqeLLQEETRQKLNLSSRIRQLEEEKNNLQEQ 1382
Cdd:pfam12128  761 ASLGVD-PDVIAKLKREIRTLERKIERIAVRR----QEVLRYFDWYQET--WLQRRPRLATQLSNIERAISELQQQLARL 833
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1383 QEEEEEARKNLEKQMLALQAQLAEAK---KKVDDDLGTIEGLEENKKKLLKDMeSLSQRLEEKAMAYDKLEKTKNRLQQE 1459
Cdd:pfam12128  834 IADTKLRRAKLEMERKASEKQQVRLSenlRGLRCEMSKLATLKEDANSEQAQG-SIGERLAQLEDLKLKRDYLSESVKKY 912

                   ....
gi 45382679   1460 LDDL 1463
Cdd:pfam12128  913 VEHF 916
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
795-1182 5.36e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 71.63  E-value: 5.36e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    795 GQSKIFFRAGVLAHLEEERDLKITDIIIFFQAVCRgylARKAFAKKQQQLSALKILQRNCAAYLKLRHWQWWRVFTKVKP 874
Cdd:TIGR02168  668 TNSSILERRREIEELEEKIEELEEKIAELEKALAE---LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    875 LLQ-VTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETElfaeaeemrarlaaKKQELEE 953
Cdd:TIGR02168  745 LEErIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE--------------ALDELRA 810
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    954 ILHDLESRVEEEEERNQILQNEKKKMQGHIQDLEeqldeeegarqklqlekvtaeAKIKKMEEEILLLEDQnskflkekk 1033
Cdd:TIGR02168  811 ELTLLNEEAANLRERLESLERRIAATERRLEDLE---------------------EQIEELSEDIESLAAE--------- 860
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1034 lmedrIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELK 1113
Cdd:TIGR02168  861 -----IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE 935
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1114 IQLAKKEEELQAALARGDEEAVQKNNALKV--------IRELQAQIAEL-------QEDLESEKASRNKAEKQKRDLSEE 1178
Cdd:TIGR02168  936 VRIDNLQERLSEEYSLTLEEAEALENKIEDdeeearrrLKRLENKIKELgpvnlaaIEEYEELKERYDFLTAQKEDLTEA 1015

                   ....
gi 45382679   1179 LEAL 1182
Cdd:TIGR02168 1016 KETL 1019
Myosin_N pfam02736
Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the ...
31-76 9.16e-12

Myosin N-terminal SH3-like domain; This domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown.


Pssm-ID: 426949  Cd Length: 45  Bit Score: 61.29  E-value: 9.16e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 45382679     31 TAKKLVWIPSERHGFEAASIKEERGDEVLVELaENGKKALVNKDDI 76
Cdd:pfam02736    1 DAKKLVWVPDPKEGFVKGEIKEEEGDKVTVET-EDGKTVTVKKDDV 45
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
877-1462 9.58e-12

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 70.57  E-value: 9.58e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    877 QVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNilaEQLQAETELFAEAEEMRARLaakKQELEEILH 956
Cdd:pfam01576  514 NVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGRKRLQRELEALT---QRLEEKAAAYDKLEKTKNRL---QQELDDLLV 587
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    957 DLESrveeeeeRNQILQNEKKKMQG-----------HIQDLEEQLDEEEGARQK----LQLEKVTAEAKIKKME------ 1015
Cdd:pfam01576  588 DLDH-------QRQLVSNLEKKQKKfdqmlaeekaiSARYAEERDRAEAEAREKetkaLSLARALEEALDAKEElerqnk 660
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1016 ------EEILLLEDQNSKFLKE----KKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELE 1085
Cdd:pfam01576  661 qlraemEDLVSSKDDVGKNVHElersKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDLQARDEQG 740
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1086 KAKRKLdgettdLQDQIAELQAQIEELKIQLA-------KKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDL 1158
Cdd:pfam01576  741 EEKRRQ------LVKQVRELEAELEDERKQRAqavaakkKLELDLKELEAQIEAANKGRDEAVKQLKKLQAQMKDLQREL 814
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1159 ESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQ---RHATA 1235
Cdd:pfam01576  815 DEARASRDEIFAQSKESEKKLKSLEAELLQLQEDLAAAERARRQAQQERDELAEEIASGNSGKSALLDEKRRleaRIAQL 894
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1236 LEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQvkaeSEHKRKKLDAQVQELTAKVTEgerlrvelaekank 1315
Cdd:pfam01576  895 EEELEEEQSNTELLNDRLRKLTLQVEQLTTELAAERSTSQK----SESARQQLERQNKELKAKLQE-------------- 956
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1316 lqneldnvsslLEEAEKKgiKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEeknnlqeqqeeeeearknlek 1395
Cdd:pfam01576  957 -----------MEGTVKS--KYKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEK--------------------- 1002
                          570       580       590       600       610       620
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679   1396 qmlalqaQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDD 1462
Cdd:pfam01576 1003 -------KLKEVLLQVEDERRNADQYKDQAEKGNSRLKQLKRQLEEAEEEASRANAARRKLQRELDD 1062
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
925-1298 2.19e-11

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 69.00  E-value: 2.19e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    925 EQLQAETELFAEAEEMRA-------RLAAKKQELEEILHDLESRVEEEEERNQILQNEK--KKMQGHIQDLEEQLDEEEG 995
Cdd:pfam17380  234 EKMERRKESFNLAEDVTTmtpeytvRYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKfeKMEQERLRQEKEEKAREVE 313
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    996 ARQKLQLEKVTAEAKIKKmeEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAE--EEEKAKNLAKLKNKQEMMItdleER 1073
Cdd:pfam17380  314 RRRKLEEAEKARQAEMDR--QAAIYAEQERMAMERERELERIRQEERKRELERirQEEIAMEISRMRELERLQM----ER 387
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1074 LKKEEKTRQELEKAkRKLDGETTDLQDQIAELQAQIEELK--------IQLAKKEEELQAALARGDEEAVQKNNALKVIR 1145
Cdd:pfam17380  388 QQKNERVRQELEAA-RKVKILEEERQRKIQQQKVEMEQIRaeqeearqREVRRLEEERAREMERVRLEEQERQQQVERLR 466
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1146 ELQAQIAELQEDLESEKASRNKAEKQKRDLSEElealktELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQI 1225
Cdd:pfam17380  467 QQEEERKRKKLELEKEKRDRKRAEEQRRKILEK------ELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEE 540
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679   1226 QEIRQRHATALEELSEQLEQAKRFKANLEKNKQglesdnkelacEVKVLQQVKaESEHKRKKLDAQVQELTAK 1298
Cdd:pfam17380  541 ERRKQQEMEERRRIQEQMRKATEERSRLEAMER-----------EREMMRQIV-ESEKARAEYEATTPITTIK 601
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
1235-1958 2.25e-11

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 69.31  E-value: 2.25e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1235 ALEELSEQLEQAKRFKANLEKNKQGLESDNKELA---CEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAE 1311
Cdd:TIGR00606  170 ALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQehqMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDP 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1312 KANKLQNELDNVSSLLEeaekkgikfakdaaslesqLQDTQELLQEETRQKLNLSSRIRQLEEEKnnLQEQQEEEEEARK 1391
Cdd:TIGR00606  250 LKNRLKEIEHNLSKIMK-------------------LDNEIKALKSRKKQMEKDNSELELKMEKV--FQGTDEQLNDLYH 308
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1392 NLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLS---QRLEEKAMAYDkLEKTKNRLQQELDDLMVDLD 1468
Cdd:TIGR00606  309 NHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQlqaDRHQEHIRARD-SLIQSLATRLELDGFERGPF 387
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1469 HQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLM 1548
Cdd:TIGR00606  388 SERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLE 467
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1549 SSKDDVGKNVHELEKSKRTLEQQveemrtqleeledELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKR----- 1623
Cdd:TIGR00606  468 GSSDRILELDQELRKAERELSKA-------------EKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHhtttr 534
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1624 ----MLVKQVRELEAELEDERKQRALAVAA---------------------KKKMEMDLKDLEGQIEAANKARDEAIKQL 1678
Cdd:TIGR00606  535 tqmeMLTKDKMDKDEQIRKIKSRHSDELTSllgyfpnkkqledwlhskskeINQTRDRLAKLNKELASLEQNKNHINNEL 614
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1679 RKLQAQMKDYQRELEEARASRDE------IFAQSKESEKKLKGLEAE-------ILQLQEEFAASERARRHAEQERDELA 1745
Cdd:TIGR00606  615 ESKEEQLSSYEDKLFDVCGSQDEesdlerLKEEIEKSSKQRAMLAGAtavysqfITQLTDENQSCCPVCQRVFQTEAELQ 694
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1746 DEIANSASGKSALLDEKRRLEARIAQLEEELEE-------EQSNMELLNERFRKTTLQVDTLNSELAGERSAAQKSEnar 1818
Cdd:TIGR00606  695 EFISDLQSKLRLAPDKLKSTESELKKKEKRRDEmlglapgRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQE--- 771
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1819 QQLERQNKELK-AKLQELEGSVKSKFKATISTLEAKIAQLEEQLEQEAKERAAA--NKLVRRTEKKLKEVFMQVEDERRH 1895
Cdd:TIGR00606  772 TLLGTIMPEEEsAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQqvNQEKQEKQHELDTVVSKIELNRKL 851
                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679   1896 ADQYKEQMEKANARMKQLKRQleeaEEEATRANASRRKLQRELDDATEANEGLSREVSTLKNR 1958
Cdd:TIGR00606  852 IQDQQEQIQHLKSKTNELKSE----KLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
883-1301 2.36e-11

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 68.89  E-value: 2.36e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    883 EELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEK-----NILAEQLQAETELFAEAEEMRARLAAKKQELEEILHD 957
Cdd:TIGR04523  267 KQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKeqdwnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQ 346
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    958 LESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMED 1037
Cdd:TIGR04523  347 LKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK 426
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1038 RIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLA 1117
Cdd:TIGR04523  427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK 506
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1118 KKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKA--EKQKRDLSEELEALKTELEDTLDTTAA 1195
Cdd:TIGR04523  507 ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKEnlEKEIDEKNKEIEELKQTQKSLKKKQEE 586
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1196 QQELRTKREQEVAELKKAIEEETKnheaqiqeirqrhatALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQ 1275
Cdd:TIGR04523  587 KQELIDQKEKEKKDLIKEIEEKEK---------------KISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIK 651
                          410       420
                   ....*....|....*....|....*.
gi 45382679   1276 QVKAESEHKRKKLDAQVQELTAKVTE 1301
Cdd:TIGR04523  652 ETIKEIRNKWPEIIKKIKESKTKIDD 677
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
877-1262 2.67e-11

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 68.91  E-value: 2.67e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   877 QVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILH 956
Cdd:PRK02224  343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERD 422
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   957 DLESRVEEEEERNQILQNEKKKMQGHIQDLE--EQLDEEEGARQKLQLEKvtAEAKIKKMEEEILLLEDQNSKFLKEKKL 1034
Cdd:PRK02224  423 ELREREAELEATLRTARERVEEAEALLEAGKcpECGQPVEGSPHVETIEE--DRERVEELEAELEDLEEEVEEVEERLER 500
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1035 MEDrIAECTSQLAEEEEKAKNLAKLknkqemmITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKI 1114
Cdd:PRK02224  501 AED-LVEAEDRIERLEERREDLEEL-------IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEARE 572
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1115 QLAKKEEELQAALARGDeeavqknnALKVIRELQAQIAELQEDLES---EKASRNKAEKQKRDLSEELEALKTELEDTLD 1191
Cdd:PRK02224  573 EVAELNSKLAELKERIE--------SLERIRTLLAAIADAEDEIERlreKREALAELNDERRERLAEKRERKRELEAEFD 644
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45382679  1192 tTAAQQELRTKREQEVAELKKaIEEETKNHEAQIQEIRQRHATALEELsEQLEQAKRFKANLEKNKQGLES 1262
Cdd:PRK02224  645 -EARIEEAREDKERAEEYLEQ-VEEKLDELREERDDLQAEIGAVENEL-EELEELRERREALENRVEALEA 712
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
883-1301 6.20e-11

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 67.82  E-value: 6.20e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    883 EELQAKDEELMKVKEKQTKVEAE-------LEEMERKHQQLLEEK----NILAEQLQAETELFAEAEEMRARLAAKKQEL 951
Cdd:pfam05483  331 EEKEAQMEELNKAKAAHSFVVTEfeattcsLEELLRTEQQRLEKNedqlKIITMELQKKSSELEEMTKFKNNKEVELEEL 410
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    952 EEILHDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLK- 1030
Cdd:pfam05483  411 KKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIEl 490
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1031 ----EKKLMEDR--IAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAE 1104
Cdd:pfam05483  491 tahcDKLLLENKelTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDK 570
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1105 LQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKT 1184
Cdd:pfam05483  571 SEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQ 650
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1185 ELEDTLDTTAAQQELRTKREQ--------------EVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFK 1250
Cdd:pfam05483  651 KFEEIIDNYQKEIEDKKISEEklleevekakaiadEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLY 730
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679   1251 ANLEKN----KQGLESDNKELACE-VKVLQQVKAESEHKrKKLDAQVQELTAKVTE 1301
Cdd:pfam05483  731 KNKEQEqssaKAALEIELSNIKAElLSLKKQLEIEKEEK-EKLKMEAKENTAILKD 785
mukB PRK04863
chromosome partition protein MukB;
1040-1769 1.01e-10

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 67.29  E-value: 1.01e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1040 AECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERL-----------------KKEEKTRQELEKAKRKL----------D 1092
Cdd:PRK04863  296 YTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYqaasdhlnlvqtalrqqEKIERYQADLEELEERLeeqnevveeaD 375
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1093 GETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARgdeeAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQK 1172
Cdd:PRK04863  376 EQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTR----AIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKE 451
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1173 RDLSEELEALKTELEDTLDT----TAAQQELRT-------KREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSE 1241
Cdd:PRK04863  452 QEATEELLSLEQKLSVAQAAhsqfEQAYQLVRKiagevsrSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQ 531
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1242 Q------LEQA-KRFKANLEKNKQgLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEgerlrveLAEKAN 1314
Cdd:PRK04863  532 QqraerlLAEFcKRLGKNLDDEDE-LEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQR-------LAARAP 603
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1315 KLQNELDNVSSLLEEAekkGIKFAkDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLE 1394
Cdd:PRK04863  604 AWLAAQDALARLREQS---GEEFE-DSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSEDPRLNALA 679
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1395 KQM--------------------LALQAQLAEAkkKVDDDLGTIEGLEENKKKLLKDM---------------------E 1433
Cdd:PRK04863  680 ERFggvllseiyddvsledapyfSALYGPARHA--IVVPDLSDAAEQLAGLEDCPEDLyliegdpdsfddsvfsveeleK 757
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1434 SLSQRLEEKAMAYDKL-----------EKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEER 1502
Cdd:PRK04863  758 AVVVKIADRQWRYSRFpevplfgraarEKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEA 837
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1503 DRAEAEAREKE-TKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDvgknvhelekskRTLEQQVEEMRTQLEE 1581
Cdd:PRK04863  838 ELRQLNRRRVElERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLAD------------ETLADRVEEIREQLDE 905
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1582 LEDE---LQATEDAKLRLE---VNMQAMKAQFERdLQARDEQNEEKKRMLVKQVRELeaeleDERKQRALAVAAKKKMEM 1655
Cdd:PRK04863  906 AEEAkrfVQQHGNALAQLEpivSVLQSDPEQFEQ-LKQDYQQAQQTQRDAKQQAFAL-----TEVVQRRAHFSYEDAAEM 979
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1656 DLKD------LEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLkgleaEILQLQEEFAA 1729
Cdd:PRK04863  980 LAKNsdlnekLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQEL-----QDLGVPADSGA 1054
                         810       820       830       840
                  ....*....|....*....|....*....|....*....|
gi 45382679  1730 SERARRHaeqeRDELADEIANSASGKSALLDEKRRLEARI 1769
Cdd:PRK04863 1055 EERARAR----RDELHARLSANRSRRNQLEKQLTFCEAEM 1090
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
998-1743 2.29e-10

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 65.90  E-value: 2.29e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    998 QKLQLEKVTAEAKIK----KMEEEILLLEDQNsKFLKEKKLMEDRIaecTSQLAEEEEKAKNLAKLKNKQEMMITDLEER 1073
Cdd:pfam05483   88 EKIKKWKVSIEAELKqkenKLQENRKIIEAQR-KAIQELQFENEKV---SLKLEEEIQENKDLIKENNATRHLCNLLKET 163
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1074 LKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALaRGDEEAVQKnnalkVIRELQAQIAE 1153
Cdd:pfam05483  164 CARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKL-KEDHEKIQH-----LEEEYKKEIND 237
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1154 LQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEetknheaqIQEIRQRHA 1233
Cdd:pfam05483  238 KEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELED--------IKMSLQRSM 309
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1234 TALEELSEQLEQAKRFKANLEKNKQG-LESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEK 1312
Cdd:pfam05483  310 STQKALEEDLQIATKTICQLTEEKEAqMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKK 389
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1313 anklqneldnvSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEEtrqklnlssriRQLEEEKNNLQEQQEEEEEARKN 1392
Cdd:pfam05483  390 -----------SSELEEMTKFKNNKEVELEELKKILAEDEKLLDEK-----------KQFEKIAEELKGKEQELIFLLQA 447
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1393 LEKQMLALQAQLAEAKKKVDDDLGTIEGLE-ENKKKLLKDMESLSQRleekamayDKLEKTKNRLQQELDDLMVDLDHQR 1471
Cdd:pfam05483  448 REKEIHDLEIQLTAIKTSEEHYLKEVEDLKtELEKEKLKNIELTAHC--------DKLLLENKELTQEASDMTLELKKHQ 519
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1472 QIVSNLEKKQKKfdqMLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSK 1551
Cdd:pfam05483  520 EDIINCKKQEER---MLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKC 596
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1552 DDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRE 1631
Cdd:pfam05483  597 NNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEE 676
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1632 LEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRdeifaqskesEK 1711
Cdd:pfam05483  677 VEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAAL----------EI 746
                          730       740       750
                   ....*....|....*....|....*....|..
gi 45382679   1712 KLKGLEAEILQLQEEFAASERARRHAEQERDE 1743
Cdd:pfam05483  747 ELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1667-1966 3.85e-10

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 64.66  E-value: 3.85e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1667 ANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELAD 1746
Cdd:COG4372   65 LNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTK 144
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1747 EIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQvdtlNSELAGERSAAQKSENARQQLERQNK 1826
Cdd:COG4372  145 QAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR----SAQIEQEAQNLATRANAAQARTEELA 220
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1827 ELKAKLQElegsvkskfkatistLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLKEvfmqVEDERRHADQYKEQMEKA 1906
Cdd:COG4372  221 RRAAAAQQ---------------TAQAIQQRDAQISQKAQQIAARAEQIRERERQLQR----LETAQARLEQEVAQLEAY 281
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679 1907 NARMKQLKRQLEEAEEEATRANASRRKLQRELDDA------TEANEGLSREVSTLKNRLRRGGPIT 1966
Cdd:COG4372  282 YQAYVRLRQQAAATQRGQVLAGAAQRVAQAQAQAQaqaqllSSANRPAALRLRRSPRRGRRQRPVT 347
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
1168-1917 4.82e-10

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 64.99  E-value: 4.82e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1168 AEKQKRDLSEELEALKTELE-DTLDTTAAQQELRTKREQEVAELKKAIEEEtknheaqiQEIRQRHATALEELSEQLEQA 1246
Cdd:TIGR00618  185 EFAKKKSLHGKAELLTLRSQlLTLCTPCMPDTYHERKQVLEKELKHLREAL--------QQTQQSHAYLTQKREAQEEQL 256
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1247 KRFKANleknkqglesdnKELACEVKVLQQVKAESEHKRKKLDAQVQelTAKVTEGERLRVELAEKANKLQNELDNVSSL 1326
Cdd:TIGR00618  257 KKQQLL------------KQLRARIEELRAQEAVLEETQERINRARK--AAPLAAHIKAVTQIEQQAQRIHTELQSKMRS 322
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1327 LEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQklnlssrirqleEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAE 1406
Cdd:TIGR00618  323 RAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHI------------RDAHEVATSIREISCQQHTLTQHIHTLQQQKTT 390
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1407 AKKKVDDDLGTIEGLEENKKKLlkDMESLSQRLEEKAMAydKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQ 1486
Cdd:TIGR00618  391 LTQKLQSLCKELDILQREQATI--DTRTSAFRDLQGQLA--HAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQ 466
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1487 MLAEEKNisaryaEERDRAEAEAREKETKALSLARALEEALEAKEEFER-----QNKQLRADMEDLMSSKDDVGKNVHEL 1561
Cdd:TIGR00618  467 SLKEREQ------QLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGScihpnPARQDIDNPGPLTRRMQRGEQTYAQL 540
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1562 EKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEkkrmlvkqvreLEAELEDERK 1641
Cdd:TIGR00618  541 ETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDL-----------TEKLSEAEDM 609
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1642 QRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKES-EKKLKGLEAEI 1720
Cdd:TIGR00618  610 LACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASrQLALQKMQSEK 689
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1721 LQL---QEEFAASERARRHAEQ---ERDELADEIANSASGKSALLDekrrleariAQLEEELEEEQSNMELLNERFRKTT 1794
Cdd:TIGR00618  690 EQLtywKEMLAQCQTLLRELEThieEYDREFNEIENASSSLGSDLA---------AREDALNQSLKELMHQARTVLKART 760
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1795 LQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELegsvkskfkatistleakiAQLEEQLEQEAKEraaankl 1874
Cdd:TIGR00618  761 EAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLL-------------------KTLEAEIGQEIPS------- 814
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|...
gi 45382679   1875 vrrtekKLKEVFMQVEDERRHADQYKEQMEKANARMKQLKRQL 1917
Cdd:TIGR00618  815 ------DEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQL 851
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
1146-1937 7.52e-10

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 64.30  E-value: 7.52e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1146 ELQAQIAELQEDLESEKASRNKAEKQKRDLSE---ELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHE 1222
Cdd:TIGR00606  221 EIRDQITSKEAQLESSREIVKSYENELDPLKNrlkEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTD 300
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1223 AQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQ-QVKAESEHKRKKlDAQVQELTAkvte 1301
Cdd:TIGR00606  301 EQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQlQADRHQEHIRAR-DSLIQSLAT---- 375
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1302 geRLRVELAEKANKLQNELDNVSSLLEEAEKKGikfAKDAASLESQLQDTQELLQE---ETRQKLNLSSRIRQLEEEKnn 1378
Cdd:TIGR00606  376 --RLELDGFERGPFSERQIKNFHTLVIERQEDE---AKTAAQLCADLQSKERLKQEqadEIRDEKKGLGRTIELKKEI-- 448
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1379 lqeqqeeeeearknLEKQmlalQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSqRLEEKAMAYDKLEKTKNRLQQ 1458
Cdd:TIGR00606  449 --------------LEKK----QEELKFVIKELQQLEGSSDRILELDQELRKAERELS-KAEKNSLTETLKKEVKSLQNE 509
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1459 ELDdlmvdldhqrqivsnLEKKQKKFDQMLAEEKnisaRYAEERDRAEAEAREKETKalslaraleealeakeefERQNK 1538
Cdd:TIGR00606  510 KAD---------------LDRKLRKLDQEMEQLN----HHTTTRTQMEMLTKDKMDK------------------DEQIR 552
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1539 QLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEdaklrlevnmqAMKAQFERDLQARDEQn 1618
Cdd:TIGR00606  553 KIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLE-----------QNKNHINNELESKEEQ- 620
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1619 eekkrmlvkqvrelEAELEDerkqRALAVAAKKKMEMDLKDLEGQIEAANKardeaikQLRKLQAQMKDYQRELEEARAS 1698
Cdd:TIGR00606  621 --------------LSSYED----KLFDVCGSQDEESDLERLKEEIEKSSK-------QRAMLAGATAVYSQFITQLTDE 675
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1699 R-------DEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQ 1771
Cdd:TIGR00606  676 NqsccpvcQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQK 755
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1772 LEEELEEEQSNMELlNERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEGSVK----SKFKATI 1847
Cdd:TIGR00606  756 VNRDIQRLKNDIEE-QETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTvqqvNQEKQEK 834
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1848 STLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLKEVFMQVEDERRHADQYKEQMEKANARMKQLKRQLEEAEEEATRA 1927
Cdd:TIGR00606  835 QHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL 914
                          810
                   ....*....|
gi 45382679   1928 NASRRKLQRE 1937
Cdd:TIGR00606  915 ETFLEKDQQE 924
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1659-1961 1.39e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 63.55  E-value: 1.39e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1659 DLEGQIEAANKARDEAIKQLrklqAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAE 1738
Cdd:TIGR02169  143 DVTDFISMSPVERRKIIDEI----AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLK 218
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1739 QERDELADEIANSasgKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERfrkttlqvdtlnselagersaaqkSENAR 1818
Cdd:TIGR02169  219 EKREYEGYELLKE---KEALERQKEAIERQLASLEEELEKLTEEISELEKR------------------------LEEIE 271
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1819 QQLERQNKELKAKLQELEGSVKSK---FKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLKEVFMQVEDERRH 1895
Cdd:TIGR02169  272 QLLEELNKKIKDLGEEEQLRVKEKigeLEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR 351
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679   1896 ADQYKEQMEKANARMKQLKRQLEEAEEEATRANASRRKLQRELDDATEANEGLSREVSTLKNRLRR 1961
Cdd:TIGR02169  352 RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417
Crescentin pfam19220
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ...
1539-1871 1.52e-09

Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteristic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.


Pssm-ID: 437057 [Multi-domain]  Cd Length: 401  Bit Score: 62.39  E-value: 1.52e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1539 QLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLevnmQAMKAQFERDLQARDEQN 1618
Cdd:pfam19220   31 QLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEEL----VARLAKLEAALREAEAAK 106
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1619 EEKK---RMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEA 1695
Cdd:pfam19220  107 EELRielRDKTAQAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQ 186
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1696 RASRDEIFAQSKESEKKLKGLEAEILQLQ----EEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQ 1771
Cdd:pfam19220  187 AAELAELTRRLAELETQLDATRARLRALEgqlaAEQAERERAEAQLEEAVEAHRAERASLRMKLEALTARAAATEQLLAE 266
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1772 LEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQ-----------NKELKAKLQELEGSVK 1840
Cdd:pfam19220  267 ARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRAraeleeraemlTKALAAKDAALERAEE 346
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....
gi 45382679   1841 S-------------KFKATISTLEAKIAQLEEQLEQEAKERAAA 1871
Cdd:pfam19220  347 RiaslsdriaeltkRFEVERAALEQANRRLKEELQRERAERALA 390
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1649-1884 1.71e-09

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 62.05  E-value: 1.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1649 AKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEfa 1728
Cdd:COG4942   32 SAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ-- 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1729 ASERARRHAEQ----ERDELADEIANSASGKSALLDEK-----RRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDT 1799
Cdd:COG4942  110 EREQRRRLAEQlaalQRSGRNPPPALLVSPEDAQRSVRlaiyyGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTT 189
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1800 LNSELAGERSAAQKSENARQQLERQ-NKELKAKLQELEgsvksKFKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRT 1878
Cdd:COG4942  190 LLSEQRAQQAKLAQLLEERKKTLAQlNSELSADQKKLE-----ELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARA 264

                 ....*.
gi 45382679 1879 EKKLKE 1884
Cdd:COG4942  265 RAAEAK 270
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
871-1513 3.05e-09

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 62.37  E-value: 3.05e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    871 KVKPLLQVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERK---HQQLLEEKNILAEQLQAETELFAEAEEMRAR---- 943
Cdd:TIGR00606  452 KQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNsltETLKKEVKSLQNEKADLDRKLRKLDQEMEQLnhht 531
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    944 --------LAAKKQELEEILHDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKME 1015
Cdd:TIGR00606  532 ttrtqmemLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHIN 611
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1016 EEILLLEDQNSKFlkekklmEDRIAECTSQLAEE----------EEKAKNLAKLKNKQEMMITDLEERLKKEEK---TRQ 1082
Cdd:TIGR00606  612 NELESKEEQLSSY-------EDKLFDVCGSQDEEsdlerlkeeiEKSSKQRAMLAGATAVYSQFITQLTDENQSccpVCQ 684
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1083 ELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEK 1162
Cdd:TIGR00606  685 RVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLK 764
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1163 ASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELR---TKREQEVAELKKAIEEETKNheaQIQEIRQRHATALEEL 1239
Cdd:TIGR00606  765 NDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKdveRKIAQQAAKLQGSDLDRTVQ---QVNQEKQEKQHELDTV 841
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1240 SEQLEQAKRFKANLEKNKQGLESDNKELACE---VKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKL 1316
Cdd:TIGR00606  842 VSKIELNRKLIQDQQEQIQHLKSKTNELKSEklqIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKD 921
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1317 QNELDNVSSLLEEAEKKGikfakdaaslESQLQDTQELLQEETRQKLNLSSRIRQLEEEKnnlqeqqeeeeeaRKNLEKQ 1396
Cdd:TIGR00606  922 QQEKEELISSKETSNKKA----------QDKVNDIKEKVKNIHGYMKDIENKIQDGKDDY-------------LKQKETE 978
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1397 MLALQAQLAEA---KKKVDDDLGTIEG---LEENKKKLLKDMESLSQRleekamaYDKLEKTKNRLQQELDDLmvDLDHQ 1470
Cdd:TIGR00606  979 LNTVNAQLEECekhQEKINEDMRLMRQdidTQKIQERWLQDNLTLRKR-------ENELKEVEEELKQHLKEM--GQMQV 1049
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|....*.
gi 45382679   1471 RQIVSNLEKKQKKFDQMLAEEKNISAR---YAEERDRAEAEAREKE 1513
Cdd:TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRqkgYEKEIKHFKKELREPQ 1095
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
877-1408 3.30e-09

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 62.05  E-value: 3.30e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    877 QVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAET----ELFAEAEEMRARLAAKKQELE 952
Cdd:pfam05483  269 KANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATkticQLTEEKEAQMEELNKAKAAHS 348
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    953 EILHDLESRVEEEEernQILQNEKKKMQGHIQDLEEQLDEEEgaRQKLQLEKVTAEAKIKKME-EEILLLEDQNSKFLKE 1031
Cdd:pfam05483  349 FVVTEFEATTCSLE---ELLRTEQQRLEKNEDQLKIITMELQ--KKSSELEEMTKFKNNKEVElEELKKILAEDEKLLDE 423
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1032 KKLMEdRIAEctsqlaEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEE 1111
Cdd:pfam05483  424 KKQFE-KIAE------ELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDK 496
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1112 LKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQedlESEKASRNKAEKQKRDLSEELEALKTELEDTLD 1191
Cdd:pfam05483  497 LLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLE---EKEMNLRDELESVREEFIQKGDEVKCKLDKSEE 573
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1192 TTAAQQELRTKREQEVAELKKA---IEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELA 1268
Cdd:pfam05483  574 NARSIEYEVLKKEKQMKILENKcnnLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFE 653
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1269 CEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKlqneldNVSSLLEEAEKKGIKFAKDAASLESQL 1348
Cdd:pfam05483  654 EIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH------KIAEMVALMEKHKHQYDKIIEERDSEL 727
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1349 QDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAK 1408
Cdd:pfam05483  728 GLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDKK 787
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
1099-1793 1.20e-08

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 60.67  E-value: 1.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1099 QDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEK----------ASRNKA 1168
Cdd:COG3096  347 QEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQtraiqyqqaiAALERA 426
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1169 EK--QKRDLSEElealktELEDTLDTTAAQQELRTKREQEVaELKKAIEEETKNHEAQIQEIRQRHATALEElSEQLEQA 1246
Cdd:COG3096  427 KElcHLPDLTAD------SAEEWLETFQAKEEEATEKLLSL-EQKMSMAQAAHSQFEQAYQLVVAIAGELAR-SEAWDVA 498
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1247 K------RFKANLEKNKQGLESDNKELacEVKVLQQVKAE----SEHKRKKLDAQVQELTAkvtEGERLRVELAEKANKL 1316
Cdd:COG3096  499 RellregPDQRHLAEQVQPLRMRLSEL--EQRLRQQQSAErllaDFCKRQGKNLDAEELEA---LHQELEALIESLSDSV 573
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1317 QNELDNVSSLLEEAEKKGIKFAKDAASLESQL--QDTQELLQEETRQKLNLSsriRQLEEEKNNLQEQQEEEEEARKNLE 1394
Cdd:COG3096  574 SNAREQRMALRQEQEQLQSRIQSLMQRAPVWLaaQNALEQLSEQSGEEFTDS---QDVTEYMQQLLEREREATVERDELG 650
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1395 KQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLL----------KDMESLSQRL--EEKAMAYDKLEKTKNRLQQeLDD 1462
Cdd:COG3096  651 ARKNALDEEIERLSQPGGSEDQRLNALAERFGGVLlseiyddvtiEDAPYFSALYgpSRHAIVVPDLSQVKEHLEG-LTD 729
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1463 LMVDL------------------DHQRQIVSNLEKKQKKFDQM--------LAEEKNISARYAEERDRAEAEAR-----E 1511
Cdd:COG3096  730 CPEDLyliegdpqsfddsvfsvdELEKAVVVKIADRQWRYSRFpeiplfgrAAREQRLESLHAERDVLSERHATlsfdvQ 809
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1512 KETKA-----------LSLARALEEALEAKEEFERQNKQLRA------DMEDLMSSKDDVGKNVHELEK--------SKR 1566
Cdd:COG3096  810 KTQRLhqafsrfigshLAVAFEADPEAEIRQLNSRRNELERAlsnhenDNQQQRIQFDQAKEGVTALNRlipqlnllADE 889
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1567 TLEQQVEEMRTQLEELEDE---LQATEDAKLRLE---VNMQAMKAQFERdLQARDEQNEEKKRMLVKQVRELeAELEDER 1640
Cdd:COG3096  890 SLADRVEEIRERLDEAQEAarfIQQHGNTLSKLEpiaSVLQSDPEQFEQ-LKEDYAQAQQMQRQARQQAFAL-TEVVQRR 967
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1641 KQRALAVAAKKKME-MDLKD-LEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDeifaQSKESEKKLKGlEA 1718
Cdd:COG3096  968 AHFSYSDSAEMLSEnSDLNEkLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYD----TKKELLNELQQ-EL 1042
                        730       740       750       760       770       780       790
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 45382679 1719 EILQLQEEFAASERARRhaeqERDELADEIANSASGKSalldekrrleariaQLEEELEEEQSNMELLNERFRKT 1793
Cdd:COG3096 1043 QDIGVRADSGAEERARI----RRDELHAQLSTNRSRRN--------------QLEKQLTFCEAEMDNLTRKLRKL 1099
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1042-1246 2.59e-08

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 58.58  E-value: 2.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1042 CTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEE 1121
Cdd:COG4942   29 AAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1122 E-----------LQAALARGDEEAVqknnALKVIRE-------LQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALK 1183
Cdd:COG4942  109 QereqrrrlaeqLAALQRSGRNPPP----ALLVSPEdaqrsvrLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQ 184
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679 1184 TELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRhATALEELSEQLEQA 1246
Cdd:COG4942  185 AELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRAN-ESRLKNEIASAEAA 246
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
1098-1884 3.43e-08

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 58.58  E-value: 3.43e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1098 LQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNAL----KVIRELQAQIAELQEDLESEKASRNKAEKQKR 1173
Cdd:pfam05483   65 LKDSDFENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLqenrKIIEAQRKAIQELQFENEKVSLKLEEEIQENK 144
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1174 DLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQIqeirqrhaTALEELSEQLEQAK-RFKAN 1252
Cdd:pfam05483  145 DLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMI--------LAFEELRVQAENARlEMHFK 216
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1253 LEKNKQGLESDNKELACEVKvlqqvkaESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEK 1332
Cdd:pfam05483  217 LKEDHEKIQHLEEEYKKEIN-------DKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIE 289
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1333 KGIKFAKDAASLESQLQ---DTQELLQEETRQKlnlSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKK 1409
Cdd:pfam05483  290 KKDHLTKELEDIKMSLQrsmSTQKALEEDLQIA---TKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLR 366
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1410 KVDddlgtiEGLEENKKKLlkdmESLSQRLEEKAMAYDKLEKTKNRLQQELDDLmvdldhqrqivsnleKKQKKFDQMLA 1489
Cdd:pfam05483  367 TEQ------QRLEKNEDQL----KIITMELQKKSSELEEMTKFKNNKEVELEEL---------------KKILAEDEKLL 421
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1490 EEKNISARYAEERDRAEAE------AREKETKALSLarALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEK 1563
Cdd:pfam05483  422 DEKKQFEKIAEELKGKEQElifllqAREKEIHDLEI--QLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLL 499
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1564 SKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKaqfERDLQARDEQnEEKKRMLVKQVRELEAELEderkqr 1643
Cdd:pfam05483  500 ENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLE---EKEMNLRDEL-ESVREEFIQKGDEVKCKLD------ 569
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1644 alavaakkKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQL 1723
Cdd:pfam05483  570 --------KSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKL 641
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1724 QEEFAAserARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLeeeleeeqsnMELLNERFRKTTLQVDTLNSE 1803
Cdd:pfam05483  642 ELELAS---AKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEA----------VKLQKEIDKRCQHKIAEMVAL 708
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1804 LAGERSAAQKSenarqqLERQNKEL---KAKLQElEGSVKSKFKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEK 1880
Cdd:pfam05483  709 MEKHKHQYDKI------IEERDSELglyKNKEQE-QSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTA 781

                   ....
gi 45382679   1881 KLKE 1884
Cdd:pfam05483  782 ILKD 785
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
1098-1880 4.03e-08

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 58.68  E-value: 4.03e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1098 LQDQIAELQAQIEELKIQLAKKEEELQAALargdeeavqknNALKVIrelqaqiaeLQEDLESEKASRNKAEKQKRDLSE 1177
Cdd:pfam10174    1 LQAQLRDLQRENELLRRELDIKESKLGSSM-----------NSIKTF---------WSPELKKERALRKEEAARISVLKE 60
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1178 ELEALKTELED-TLDTTAAQQELRTKRE------------QEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLE 1244
Cdd:pfam10174   61 QYRVTQEENQHlQLTIQALQDELRAQRDlnqllqqdfttsPVDGEDKFSTPELTEENFRRLQSEHERQAKELFLLRKTLE 140
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1245 QakrFKANLEKNKQGLESDNKELACEVKVLQ-----QVKAESEHKRKK----LDAQVQELTA----KVTEGERLRVELAE 1311
Cdd:pfam10174  141 E---MELRIETQKQTLGARDESIKKLLEMLQskglpKKSGEEDWERTRriaeAEMQLGHLEVlldqKEKENIHLREELHR 217
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1312 KaNKLQNELDNVSSLLEEAEKKGIKFakdaASLESQLQDTQELLQE-ETRQKLNLSSR---IRQLEEEKNNLQEQQEEEE 1387
Cdd:pfam10174  218 R-NQLQPDPAKTKALQTVIEMKDTKI----SSLERNIRDLEDEVQMlKTNGLLHTEDReeeIKQMEVYKSHSKFMKNKID 292
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1388 EARKNLEK---QMLALQAQLAEAKKKVDDDLGTIEGLEEN-------KKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQ 1457
Cdd:pfam10174  293 QLKQELSKkesELLALQTKLETLTNQNSDCKQHIEVLKESltakeqrAAILQTEVDALRLRLEEKESFLNKKTKQLQDLT 372
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1458 QELDDLMVDLDHQRQIVSNLEKK----QKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLaraleealeakeef 1533
Cdd:pfam10174  373 EEKSTLAGEIRDLKDMLDVKERKinvlQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTAL-------------- 438
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1534 erqnkqlrADMEDLMSSKDDVGKNV-HELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQferdlQ 1612
Cdd:pfam10174  439 --------TTLEEALSEKERIIERLkEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEH-----A 505
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1613 ARDEQNEEKKRMLVKQvreLEAELEDERKQRALAVAAKKKMEmdlkdlegQIEAANKARDEAIKQLRKLQAQMKDYQREL 1692
Cdd:pfam10174  506 SSLASSGLKKDSKLKS---LEIAVEQKKEECSKLENQLKKAH--------NAEEAVRTNPEINDRIRLLEQEVARYKEES 574
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1693 EEARASRDEIFAQSKESE-------KKLKGLEAEILQLQEEFAASERARRHAEQERDEladeiansasgKSALLDEkrrl 1765
Cdd:pfam10174  575 GKAQAEVERLLGILREVEnekndkdKKIAELESLTLRQMKEQNKKVANIKHGQQEMKK-----------KGAQLLE---- 639
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1766 EARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAgerSAAQKSENARQQLERQNKELKAKLQELEGSVKSKFKA 1845
Cdd:pfam10174  640 EARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLS---STQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLA 716
                          810       820       830
                   ....*....|....*....|....*....|....*
gi 45382679   1846 TISTLEAKIAQLEeqLEQEAKERAAANKLVRRTEK 1880
Cdd:pfam10174  717 AISEKDANIALLE--LSSSKKKKTQEEVMALKREK 749
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
1416-1961 4.59e-08

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 58.70  E-value: 4.59e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1416 GTIEGLEENKKKLlkdmESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLdhqRQIVSNLEKKQKKFDQMLAEEKNiS 1495
Cdd:pfam12128  241 PEFTKLQQEFNTL----ESAELRLSHLHFGYKSDETLIASRQEERQETSAEL---NQLLRTLDDQWKEKRDELNGELS-A 312
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1496 ARYAEERDRAEAEAREKETKALSLARALEEALEAKeeferQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQV-EE 1574
Cdd:pfam12128  313 ADAAVAKDRSELEALEDQHGAFLDADIETAAADQE-----QLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIkEQ 387
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1575 MRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQardEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAkkkmE 1654
Cdd:pfam12128  388 NNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELR---EQLEAGKLEFNEEEYRLKSRLGELKLRLNQATAT----P 460
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1655 MDLKDLEGQIEAANKARDEaikqLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEE-FAAS--- 1730
Cdd:pfam12128  461 ELLLQLENFDERIERAREE----QEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQlFPQAgtl 536
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1731 -ERARRHAEQERDELADEIA-------------NSASGKSAL------LDEKR-----------RLEARIAQLEEELEEE 1779
Cdd:pfam12128  537 lHFLRKEAPDWEQSIGKVISpellhrtdldpevWDGSVGGELnlygvkLDLKRidvpewaaseeELRERLDKAEEALQSA 616
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1780 QSNMELLNERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEGSVKSKFKATISTLEAKIAQLEE 1859
Cdd:pfam12128  617 REKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDK 696
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1860 QLeQEAKERAAANKLVRRTEK--KLKEVfmqVEDERRHADQYKEQMEkanARMKQLKRQLEEAEEEATRANASRrklqre 1937
Cdd:pfam12128  697 KH-QAWLEEQKEQKREARTEKqaYWQVV---EGALDAQLALLKAAIA---ARRSGAKAELKALETWYKRDLASL------ 763
                          570       580
                   ....*....|....*....|....
gi 45382679   1938 lDDATEANEGLSREVSTLKNRLRR 1961
Cdd:pfam12128  764 -GVDPDVIAKLKREIRTLERKIER 786
YhaN COG4717
Uncharacterized protein YhaN, contains AAA domain [Function unknown];
920-1590 5.63e-08

Uncharacterized protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 227061 [Multi-domain]  Cd Length: 984  Bit Score: 58.32  E-value: 5.63e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  920 KNILAEQLQAETELFAEAEEMRARLAAKKQELEEilHDLESRveeeeeRNQILQNEKKKMQGHIQDLEEQLDEEEGARQK 999
Cdd:COG4717  180 NPQINQLLEKLKQERNEIDEAEKEYATYHKLLES--RRAEHA------RLAELRSELRADRDHIRALRDAVELWPRLQEW 251
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1000 LQLEKVTAEakikKMEEEILLLED---QNSKFLKEKKLMEDRIAECTSQLAEeeekaknlakLKNKQEMMITDLEERLKK 1076
Cdd:COG4717  252 KQLEQELTR----RREELATFPRDgvlRLEKREAHLQKTEAEIDALLVRLAE----------LKDLASQLIPAKEAVLQA 317
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1077 EEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALargDEEAVQKNNALKVIRELQAQIAELQE 1156
Cdd:COG4717  318 LVRLHQQLSEIKASAFELTETLAGIEADLRDKEEAAGNGFEAERVHDLRSL---ECMLRYQSSQRELKQTEAAYCKRLDE 394
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1157 DLESEKASRNKAEKQKRDlseELEALKTELEDTLDTTAAQQELRTKreqevaelkkaieEETKNHEAQIQEIRQRHATAL 1236
Cdd:COG4717  395 KRLFEDEAEEEARQRLAD---DEEEVRAGDEAREEKIAANSQVIDK-------------EEVCNLYDRRDTAWQKQRFLR 458
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1237 EELSEQLEQAKRFKANLEKNKQGLesdnkELACEVKVLQQVKAesehkrkkldaqvqELTAKVTEGERLRVELAEKANKL 1316
Cdd:COG4717  459 EKQTAFERQKTEHTKIIALRLAGM-----LLVALSRLLTSLIF--------------QIIFAVAQIVFLSAEIKSSSRAV 519
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1317 QNELDNVSSLLEEAekkgikfAKDAASLESQLQDTQELLQEETRQ-KLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEK 1395
Cdd:COG4717  520 REEKAAVTDIPEEL-------ARLLITDELPELAVDLLVQSRIRQhWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQS 592
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1396 QMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRL----EEKAMAYDKLEKTKNRLQQELDDLMVDLDHQR 1471
Cdd:COG4717  593 EWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELTHQVarlrEEQAAFEERVEGLLAVLEAQFIDLSTLFCVQR 672
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1472 QIVS--NLEKKQKKFDQML---AEEKNISARYAEERDRAEAE------AREKETKALSLARALEEALEAKEEFERQNKQL 1540
Cdd:COG4717  673 LRVAaeLQKEEARLALEGNierTKELNDELRAELELHRKEILdlfdcgTADTEDAFREAAREEQQLTQRESRLESLEAQL 752
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679 1541 RA------DMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATE 1590
Cdd:COG4717  753 EGvaaeayELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLE 808
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1171-1379 8.90e-08

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 56.96  E-value: 8.90e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1171 QKRDLSEELEALKTELEDTldtTAAQQELRTKREQEVAELKKAiEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFK 1250
Cdd:COG4372   75 QLDDIRPQLRALRTELGTA---QGEKRAAETEREAARSELQKA-RQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQ 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1251 ---ANLEKNKQGLESDNKELACEVKVLQQVKAEsehkrkkLDAQVQELTAKVTEGERLRVELAEKANKLQN---ELDNVS 1324
Cdd:COG4372  151 trlKTLAEQRRQLEAQAQSLQASQKQLQASATQ-------LKSQVLDLKLRSAQIEQEAQNLATRANAAQArteELARRA 223
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 45382679 1325 SLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNL 1379
Cdd:COG4372  224 AAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQL 278
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
1308-1917 9.63e-08

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 57.34  E-value: 9.63e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1308 ELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEE 1387
Cdd:TIGR04523   37 QLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDK 116
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1388 EARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDL 1467
Cdd:TIGR04523  117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1468 DHQRQIVSNLEKKQKKFDQMLAEeknisaryaeerdraeaeareketkalslaraleealeakeeferqnkqlradmedl 1547
Cdd:TIGR04523  197 LKLELLLSNLKKKIQKNKSLESQ--------------------------------------------------------- 219
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1548 msskddvgknVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFErDLQARDEQNEEKKRMLVK 1627
Cdd:TIGR04523  220 ----------ISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLS-EKQKELEQNNKKIKELEK 288
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1628 QVRELEAELEDERKQRALAVAakKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSK 1707
Cdd:TIGR04523  289 QLNQLKSEISDLNNQKEQDWN--KELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELE 366
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1708 ESEKKLKGLEAEilqlqeefaaserarrhaeqerdeladeiansasgKSALLDEKRRLEARIAQLEEELEEEQSNMELLN 1787
Cdd:TIGR04523  367 EKQNEIEKLKKE-----------------------------------NQSYKQEIKNLESQINDLESKIQNQEKLNQQKD 411
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1788 ERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEgSVKSKFKATISTLEAKIAQLEEQLEQEAKE 1867
Cdd:TIGR04523  412 EQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLD-NTRESLETQLKVLSRSINKIKQNLEQKQKE 490
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|
gi 45382679   1868 RAAANKLVRRTEKKLKEVFMQVEDERRHADQYKEQMEKANARMKQLKRQL 1917
Cdd:TIGR04523  491 LKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
PRK11281 PRK11281
mechanosensitive channel MscK;
1103-1403 9.77e-08

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 57.61  E-value: 9.77e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1103 AELQAQIEELKiqlakKEEELQAalargDEEAVQKN--NALKVIrelqAQIAELQEDLESEKASRNKAEKQKRDLSEELE 1180
Cdd:PRK11281   39 ADVQAQLDALN-----KQKLLEA-----EDKLVQQDleQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELE 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1181 ALKTELEDTLDTTAAQQELRTkREQEVAELKKAIEEETKN-HEAQIQEIRQRHA-----TALEELSEQLEQAKRFKANLE 1254
Cdd:PRK11281  105 ALKDDNDEETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDlAEYNSQLVSLQTQperaqAALYANSQRLQQIRNLLKGGK 183
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1255 KNKQGLESDNK-ELACEvkvLQQVKAESEHKRKKLDA--QVQELtakvteGERLRVELAEKANKLQNELdnvsSLLEEA- 1330
Cdd:PRK11281  184 VGGKALRPSQRvLLQAE---QALLNAQNDLQRKSLEGntQLQDL------LQKQRDYLTARIQRLEHQL----QLLQEAi 250
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1331 -EKKGIKFAKDAASLESQlQDTQE-----LLQEETRQKLNLSSRIRQLEEEKNNLQeqqeeeeeaRKNLE-KQML--ALQ 1401
Cdd:PRK11281  251 nSKRLTLSEKTVQEAQSQ-DEAARiqanpLVAQELEINLQLSQRLLKATEKLNTLT---------QQNLRvKNWLdrLTQ 320

                  ..
gi 45382679  1402 AQ 1403
Cdd:PRK11281  321 SE 322
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
1221-1955 1.10e-07

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 57.16  E-value: 1.10e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1221 HEAQIQEIRQRhATALEELSEQLEQAKrfkANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAkvt 1300
Cdd:pfam12128  232 AIAGIMKIRPE-FTKLQQEFNTLESAE---LRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRD--- 304
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1301 egeRLRVELA---EKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQklnLSSRIRQLEEEKN 1377
Cdd:pfam12128  305 ---ELNGELSaadAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKA---LTGKHQDVTAKYN 378
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1378 NLqeqqeeeeearknlekqmlalqaqlaeaKKKVDDDLGTIegLEENKKKLLKDMESLSQRLEEKAMAYDKLEktkNRLQ 1457
Cdd:pfam12128  379 RR----------------------------RSKIKEQNNRD--IAGIKDKLAKIREARDRQLAVAEDDLQALE---SELR 425
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1458 QELDDLMVDL-DHQRQIVSNLEKKQKKFDQMLAEEKNISARyaEERDRAEAEAREKETKAlslaraleealeakeeferq 1536
Cdd:pfam12128  426 EQLEAGKLEFnEEEYRLKSRLGELKLRLNQATATPELLLQL--ENFDERIERAREEQEAA-------------------- 483
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1537 nkqlRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQA---TEDAKLRLEVNM--QAMKAQFERDL 1611
Cdd:pfam12128  484 ----NAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPqagTLLHFLRKEAPDweQSIGKVISPEL 559
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1612 QARDEQNEEKKRMLVKQVRELEA-ELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQR 1690
Cdd:pfam12128  560 LHRTDLDPEVWDGSVGGELNLYGvKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASR 639
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1691 ELEEARASrdeiFAQSKESEKKLKG-LEAEILQLQEefaASERARRHAEQERDELADEIANSASGKSALLDEKRR--LEA 1767
Cdd:pfam12128  640 EETFARTA----LKNARLDLRRLFDeKQSEKDKKNK---ALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEqkREA 712
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1768 RIAQLeeeleeeqsnmELLNERFRKTTLQVDTLNSELAGERSAAQKSENArqqLERQNK-ELKAKLQELEgsvkskfkaT 1846
Cdd:pfam12128  713 RTEKQ-----------AYWQVVEGALDAQLALLKAAIAARRSGAKAELKA---LETWYKrDLASLGVDPD---------V 769
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1847 ISTLEAKIAQLEEQLEQEAKERAAanklVRRTEKKLKEVFMQvederrHADQYKEQMEKANARMK----QLKRQLEEAEE 1922
Cdd:pfam12128  770 IAKLKREIRTLERKIERIAVRRQE----VLRYFDWYQETWLQ------RRPRLATQLSNIERAISelqqQLARLIADTKL 839
                          730       740       750
                   ....*....|....*....|....*....|...
gi 45382679   1923 EATRANASRRKLQRELDDATEANEGLSREVSTL 1955
Cdd:pfam12128  840 RRAKLEMERKASEKQQVRLSENLRGLRCEMSKL 872
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1535-1751 1.23e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 56.27  E-value: 1.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1535 RQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQA-------TEDAKLRLEVNMQAMKAQF 1607
Cdd:COG4942   38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKlrkqiadLNARLNALEVQEREQRRRL 117
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1608 ERDLQA--------------RDEQNEEKKRMLV----------KQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQ 1663
Cdd:COG4942  118 AEQLAAlqrsgrnpppallvSPEDAQRSVRLAIyygalnparaERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQ 197
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1664 IEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIfaqskesEKKLKGLEAEILQLQEEFAASERARRHAEQERDE 1743
Cdd:COG4942  198 QAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRL-------KNEIASAEAAAAKAREAAAAAEAAAARARAAEAK 270

                 ....*...
gi 45382679 1744 LADEIANS 1751
Cdd:COG4942  271 RTGETYKP 278
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
883-1873 1.25e-07

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 57.37  E-value: 1.25e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    883 EELQAK-DEELMKVKEKQTK-VEAELEEMERKHQQLLEekNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLES 960
Cdd:TIGR01612  699 DDLKSKiDKEYDKIQNMETAtVELHLSNIENKKNELLD--IIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKINDYAK 776
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    961 RveeeeernqilQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIA 1040
Cdd:TIGR01612  777 E-----------KDELNKYKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFL 845
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1041 ECTSQLAEEEEKAKNLAklkNKQEMMITDLEERLKKEEKTRQeLEKAKRKLDgettDLQDQIAELQAQIEE--LKIQLAK 1118
Cdd:TIGR01612  846 NKVDKFINFENNCKEKI---DSEHEQFAELTNKIKAEISDDK-LNDYEKKFN----DSKSLINEINKSIEEeyQNINTLK 917
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1119 KEEELqAALARGDEEAVQK--NNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELedTLDTTAA- 1195
Cdd:TIGR01612  918 KVDEY-IKICENTKESIEKfhNKQNILKEILNKNIDTIKESNLIEKSYKDKFDNTLIDKINELDKAFKDA--SLNDYEAk 994
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1196 -----------QQELRTKRE----QEVAELKKA---IEEETKNHEAQIQEIRQRHATALEELSEQLEqaKRFKANLEK-N 1256
Cdd:TIGR01612  995 nnelikyfndlKANLGKNKEnmlyHQFDEKEKAtndIEQKIEDANKNIPNIEIAIHTSIYNIIDEIE--KEIGKNIELlN 1072
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1257 KQGLESDNKELACEVKVLQQVK------------AESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVS 1324
Cdd:TIGR01612 1073 KEILEEAEINITNFNEIKEKLKhynfddfgkeenIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQI 1152
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1325 SLLEEAEKKGIkFAKDAASLESQLQ------DTQELLQEETRQKLNlssRIRQLEEEKNNLQEQQEEEEEARKNLEKQML 1398
Cdd:TIGR01612 1153 NDLEDVADKAI-SNDDPEEIEKKIEnivtkiDKKKNIYDEIKKLLN---EIAEIEKDKTSLEEVKGINLSYGKNLGKLFL 1228
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1399 AlqaQLAEAKKKVDDDLGTIEGLEENkkklLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDD----LMVDLDHQRQIv 1474
Cdd:TIGR01612 1229 E---KIDEEKKKSEHMIKAMEAYIED----LDEIKEKSPEIENEMGIEMDIKAEMETFNISHDDdkdhHIISKKHDENI- 1300
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1475 SNLEKKQKKFDQMLAEEKNIS------ARYAEERDRAEAEAREKETKALSLARALEEALEakeeferqnKQLRADMEDLM 1548
Cdd:TIGR01612 1301 SDIREKSLKIIEDFSEESDINdikkelQKNLLDAQKHNSDINLYLNEIANIYNILKLNKI---------KKIIDEVKEYT 1371
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1549 SSKDDVGKNVH-ELEKSKrTLEQQVEEmRTQLEELEDELQATEDAK---------LRLEVNMQAMKAQFERDLQARDEQN 1618
Cdd:TIGR01612 1372 KEIEENNKNIKdELDKSE-KLIKKIKD-DINLEECKSKIESTLDDKdidecikkiKELKNHILSEESNIDTYFKNADENN 1449
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1619 EEKKrMLVKQVreleaELEDERKQRALAVA---AKKKMEMDLKDLEGQIEAANKARDEA---IKQLRKLQAQMKDYQRE- 1691
Cdd:TIGR01612 1450 ENVL-LLFKNI-----EMADNKSQHILKIKkdnATNDHDFNINELKEHIDKSKGCKDEAdknAKAIEKNKELFEQYKKDv 1523
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1692 --------------------------LEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELA 1745
Cdd:TIGR01612 1524 tellnkysalaiknkfaktkkdseiiIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLE 1603
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1746 D------EIANSASGKSALLDEKRRLEARIaqleeeleeeqsnmellnerfrkTTLQVDTLNSELAGERSAAQKSENARQ 1819
Cdd:TIGR01612 1604 NfenkflKISDIKKKINDCLKETESIEKKI-----------------------SSFSIDSQDTELKENGDNLNSLQEFLE 1660
                         1050      1060      1070      1080      1090
                   ....*....|....*....|....*....|....*....|....*....|....
gi 45382679   1820 QLERQNKELKAKLQELEgSVKSKFKATISTLEAKIAQLEEQLEQEAKERAAANK 1873
Cdd:TIGR01612 1661 SLKDQKKNIEDKKKELD-ELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIANK 1713
mukB PRK04863
chromosome partition protein MukB;
1389-1771 1.35e-07

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 56.89  E-value: 1.35e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1389 ARKNLEKQMLALQAQLAEAKKKvdddlgtiegleenkkkllkdMESLSQRLEEKAMAYDKLEKTKNRLQQELDDL----- 1463
Cdd:PRK04863  280 ERRVHLEEALELRRELYTSRRQ---------------------LAAEQYRLVEMARELAELNEAESDLEQDYQAAsdhln 338
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1464 --MVDLDHQRQI---VSNLEKKQKKfdqmLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNK 1538
Cdd:PRK04863  339 lvQTALRQQEKIeryQADLEELEER----LEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAI 414
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1539 QLRADMEDLMSSKDDVGKNVHELEKskrtLEQQVEEMRTQLEELEDELQATEDaKLRLEvnmQAMKAQFERDLQARDEQN 1618
Cdd:PRK04863  415 QYQQAVQALERAKQLCGLPDLTADN----AEDWLEEFQAKEQEATEELLSLEQ-KLSVA---QAAHSQFEQAYQLVRKIA 486
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1619 EEKKRMLVKQV-RELeaeLEDERKQRALAVAAkKKMEMDLKDLEGQIE---AANKARDEAIKQLRK---LQAQMKDYQRE 1691
Cdd:PRK04863  487 GEVSRSEAWDVaREL---LRRLREQRHLAEQL-QQLRMRLSELEQRLRqqqRAERLLAEFCKRLGKnldDEDELEQLQEE 562
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1692 LEEARASRDEIFAQSKES----EKKLKGLEAEILQL----QEEFAASERARRHAEQERDELADE------IANSASGKSA 1757
Cdd:PRK04863  563 LEARLESLSESVSEARERrmalRQQLEQLQARIQRLaaraPAWLAAQDALARLREQSGEEFEDSqdvteyMQQLLERERE 642
                         410
                  ....*....|....
gi 45382679  1758 LLDEKRRLEARIAQ 1771
Cdd:PRK04863  643 LTVERDELAARKQA 656
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
1323-1896 1.54e-07

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 56.66  E-value: 1.54e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1323 VSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEeknnlqeqqeeeeeaRKNLEKQMLALQA 1402
Cdd:pfam05557   11 LSQLQNEKKQMELEHKRARIELERKASALARQLERESDRNQELQKRIRLLEK---------------REAEAEEALREQA 75
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1403 QLAEAKKKVDDDLGTIEGLEENKKKLLKDMES-LSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1481
Cdd:pfam05557   76 ELNRLKKKNLEALNKKLNEKESQLADAREVIScLKNELSELRRQIQRQELELSSTNSELEELQERLDLQKAKAQEAEQLR 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1482 KKFDQMLAEEKNISARYAEERDRAEAEAREKEtkalsLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHEL 1561
Cdd:pfam05557  156 QNLEAQQSSLAEAEQRIKELEFEIQSQEQDSE-----IVKNSKSELARIPELERELERLREHNKHLNENIENKLLLKEEV 230
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1562 EKSKRTLEQQvEEMRTQLEELEDELQATEdAKLRLEVNMQAMKAQFER---DLQARDEQNEEKKRMLVKQVRELEAELED 1638
Cdd:pfam05557  231 EDLKRKLERE-EGYREELATLELEKEKLE-QELKSWEKLAQDTGLNLRspeDLSRRIEQLQQREITLKEENSSLTSSARQ 308
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1639 ERKQRALavaakkkMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARA---SRDEIFAQSKESEKKLKG 1715
Cdd:pfam05557  309 LEKAQRE-------LEQELAQYLKNIEDLNKKLKRHKALVRRLQRRVLLLTKERDGMRAileSYDKELTPSNYSPQLLER 381
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1716 LE--AEILQLQEEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFR-- 1791
Cdd:pfam05557  382 IEeaEDMTQDMQAHNEEMEAQLSVAEEELGGYKQQATTLERELQALRQQESLADPSYSKEEVDSLRRKLETLEAERQRlr 461
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1792 --KTTLQVDTLNSELAGERSAA-----QKSENARQQLERQNKELKAKLQELEGSVKSKFKATISTLEAKIAQLEEQLEQE 1864
Cdd:pfam05557  462 eqKNELEMELERRCLQGDYDPKktkvlHLSMNPAAEAYQQRANDLEKLQAEIERLKRRLKKLEDDLEQVGSLPETTSTMN 541
                          570       580       590
                   ....*....|....*....|....*....|....*
gi 45382679   1865 AKERAAANKLVRRTEKK---LKEVFMQVEDERRHA 1896
Cdd:pfam05557  542 FKEVLELRKELESAELKnqrLKEVFQAKIQEFRDV 576
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1628-1959 1.70e-07

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 56.59  E-value: 1.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1628 QVRELEAELEDerKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYqrelEEARASRDEIFAQSK 1707
Cdd:PRK02224  188 SLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEH----EERREELETLEAEIE 261
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1708 ESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLN 1787
Cdd:PRK02224  262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHN 341
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1788 ERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEGSVKSkFKATISTLEAKIAQLEEQLEQEAKE 1867
Cdd:PRK02224  342 EEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE-LRERFGDAPVDLGNAEDFLEELREE 420
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1868 RAAANKLVRRTEKKLKEVFMQVEDERR------------------HAD---QYKEQMEKANARMKQLKRQLEEAEEEATR 1926
Cdd:PRK02224  421 RDELREREAELEATLRTARERVEEAEAlleagkcpecgqpvegspHVEtieEDRERVEELEAELEDLEEEVEEVEERLER 500
                         330       340       350
                  ....*....|....*....|....*....|...
gi 45382679  1927 ANASrRKLQRELDDATEANEGLSREVSTLKNRL 1959
Cdd:PRK02224  501 AEDL-VEAEDRIERLEERREDLEELIAERRETI 532
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1552-1749 1.83e-07

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 56.19  E-value: 1.83e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1552 DDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQAT-EDAKL----RLEVNMQAMKAQFE-RDLQARDEQNEEKKRML 1625
Cdd:COG4372   77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKArQEREAvrqeLAAARQNLAKAQQElARLTKQAQDLQTRLKTL 156
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1626 VKQVRELEAELED-ERKQRALAVAAKkkmEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDyqRELEEARASRDEIFA 1704
Cdd:COG4372  157 AEQRRQLEAQAQSlQASQKQLQASAT---QLKSQVLDLKLRSAQIEQEAQNLATRANAAQART--EELARRAAAAQQTAQ 231
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 45382679 1705 QSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIA 1749
Cdd:COG4372  232 AIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVA 276
PRK01156 PRK01156
chromosome segregation protein; Provisional
1236-1750 2.32e-07

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 56.06  E-value: 2.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1236 LEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANK 1315
Cdd:PRK01156  185 IDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESD 264
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1316 LQNELDNVSSlLEEAEKKGIKFAKDAASLEsqlqdtqellQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEk 1395
Cdd:PRK01156  265 LSMELEKNNY-YKELEERHMKIINDPVYKN----------RNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLS- 332
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1396 QMLALQAQLAEAKKKVDD---DLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKL-----------EKTKNRLQQELD 1461
Cdd:PRK01156  333 VLQKDYNDYIKKKSRYDDlnnQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMsafiseilkiqEIDPDAIKKELN 412
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1462 DLMVDLDHQRQIVSNLEKKQKKFDQMLAE-------------------------EKNISARYAEERDRAEAEAREKETKA 1516
Cdd:PRK01156  413 EINVKLQDISSKVSSLNQRIRALRENLDElsrnmemlngqsvcpvcgttlgeekSNHIINHYNEKKSRLEEKIREIEIEV 492
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1517 LSLaraleeALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTlEQQVEEMRTQLEELEDELQAT--EDAKL 1594
Cdd:PRK01156  493 KDI------DEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIK-INELKDKHDKYEEIKNRYKSLklEDLDS 565
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1595 RLEVNMQAMKAQFERDLQARDEQNEEKKRML---VKQVRELEAELEDERKQRALAVaakKKMEMDLKDLEGQIEAAnKAR 1671
Cdd:PRK01156  566 KRTSWLNALAVISLIDIETNRSRSNEIKKQLndlESRLQEIEIGFPDDKSYIDKSI---REIENEANNLNNKYNEI-QEN 641
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679  1672 DEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIAN 1750
Cdd:PRK01156  642 KILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRIND 720
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
872-1099 2.61e-07

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 55.42  E-value: 2.61e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  872 VKPLLQVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQEL 951
Cdd:COG4372   70 RSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDL 149
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  952 EEILHDLESRVEEEEERNQILQNEKKKMQghiqdleeqldeeeGARQKLQLEKVTAEAKIKKMEEEILLLEDQNskflKE 1031
Cdd:COG4372  150 QTRLKTLAEQRRQLEAQAQSLQASQKQLQ--------------ASATQLKSQVLDLKLRSAQIEQEAQNLATRA----NA 211
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 45382679 1032 KKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQ 1099
Cdd:COG4372  212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLE 279
EzrA pfam06160
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ...
1010-1372 2.68e-07

Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation.


Pssm-ID: 428797 [Multi-domain]  Cd Length: 542  Bit Score: 55.63  E-value: 2.68e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1010 KIKKMEEEILLLEDQNSK--FLKEKKLMEdriaECTSQLAEEEEKAKNlaklknkqemMITDLEERLKKEEKTRQELEKA 1087
Cdd:pfam06160   61 SLPDIEELLFEAEELNDKyrFKKAKKALD----EIEELLDDIEEDIKQ----------ILEELDELLESEEKNREEVEEL 126
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1088 KRKLDGETTDLQDQ-------IAELQAQIEELKIQLAKKEEELQAalarGDEEAvqknnALKVIRELQAQIAELQEDLES 1160
Cdd:pfam06160  127 KDKYRELRKTLLANrfsygpaIDELEKQLAEIEEEFSQFEELTES----GDYLE-----AREVLEKLEEETDALEELMED 197
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1161 EKASRNKAEKQKRDLSEELEALKTELED---TLDTTAAQQELRTKREQeVAELKKAIEE-ETKNHEAQIQEIRQRhataL 1236
Cdd:pfam06160  198 IPPLYEELKTELPDQLEELKEGYREMEEegyALEHLNVDKEIQQLEEQ-LEENLALLENlELDEAEEALEEIEER----I 272
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1237 EELSEQLEQAKRFKANLEKNKQGLESD-------NKELACEVKVLQQ---VKAESEHKRKKLDAQVQELTAKVtegERLR 1306
Cdd:pfam06160  273 DQLYDLLEKEVDAKKYVEKNLPEIEDYlehaeeqNKELKEELERVQQsytLNENELERVRGLEKQLEELEKRY---DEIV 349
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679   1307 VELAEKA---NKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQL 1372
Cdd:pfam06160  350 ERLEEKEvaySELQEELEEILEQLEEIEEEQEEFKESLQSLRKDELEAREKLDEFKLELREIKRLVEKS 418
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1084-1332 2.81e-07

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 55.42  E-value: 2.81e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1084 LEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAAL-----ARGDEEAVQ---------KNNALKVIRELQA 1149
Cdd:COG4372   65 LNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARselqkARQEREAVRqelaaarqnLAKAQQELARLTK 144
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1150 QIAELQEDLESEKASRNKAEKQKRDL---SEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHeAQIQ 1226
Cdd:COG4372  145 QAQDLQTRLKTLAEQRRQLEAQAQSLqasQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEEL-ARRA 223
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1227 EIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEhkRKKLDAQVQELTAKVTEGERLR 1306
Cdd:COG4372  224 AAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLE--AYYQAYVRLRQQAAATQRGQVL 301
                        250       260
                 ....*....|....*....|....*.
gi 45382679 1307 VELAEKANKLQNELDNVSSLLEEAEK 1332
Cdd:COG4372  302 AGAAQRVAQAQAQAQAQAQLLSSANR 327
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1563-1818 3.35e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 54.73  E-value: 3.35e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1563 KSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMK---AQFERDLQARDEQNEEKKRMLVKQVRELEAELEDE 1639
Cdd:COG4942   31 FSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLEteiASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1640 RKQR---ALAVAAKKKMEMD----LKDLEGQIEAA----------NKARDEAIKQLRKLQAQMKDYQRELEEARASRDEI 1702
Cdd:COG4942  111 REQRrrlAEQLAALQRSGRNpppaLLVSPEDAQRSvrlaiyygalNPARAERIDALKATLKQLAAVRAEIAAEQAELTTL 190
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1703 FAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANsasgksalldEKRRLEARIAQLEEELeeeqsn 1782
Cdd:COG4942  191 LSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKN----------EIASAEAAAAKAREAA------ 254
                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 45382679 1783 mellnERFRKTTLQVDTLNSELAGERSAAQKSENAR 1818
Cdd:COG4942  255 -----AAAEAAAARARAAEAKRTGETYKPTAPEKML 285
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
1051-1186 3.42e-07

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 55.60  E-value: 3.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1051 EKAK-NLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLakkEEELQAALAR 1129
Cdd:PRK00409  505 EEAKkLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA---EKEAQQAIKE 581
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679  1130 GDEEAVQknnalkVIRELQAQIAELQEDLESEKASrnkaEKQKRdLSEELEALKTEL 1186
Cdd:PRK00409  582 AKKEADE------IIKELRQLQKGGYASVKAHELI----EARKR-LNKANEKKEKKK 627
EzrA COG4477
Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome ...
1064-1442 4.00e-07

Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 226883 [Multi-domain]  Cd Length: 570  Bit Score: 55.07  E-value: 4.00e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1064 EMMITDLEERLKKEEKTRQELEKAKRKLDgettDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKN--NAL 1141
Cdd:COG4477  121 EQILEDLNELVESEEKNSEEIDHVLELYE----ELRRDVLANRHQYGEAAPELEKKLENIEEELSQFVELTSSGDyiEAR 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1142 KVIRELQAQIAELQEDLESEKASRNKAEKqkrDLSEELEALKTELEDT------LDTTAAQQELRTKREQEVAELKKAIE 1215
Cdd:COG4477  197 EVLEEAEEHMIALRSIMERIPSLLAELQT---ELPGQLQDLKAGYRDMkeegyhLEHVNIDSRLERLKEQLVENSELLTQ 273
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1216 EETKNHEAQIQEIRQRhataLEELSEQLEQAKRFKANLEKNKQGLESDnkelacevkvLQQVKAESEHkrkkldaqVQEL 1295
Cdd:COG4477  274 LELDEAEEELGLIQEK----IESLYDLLEREVEAKNVVEENLPILPDY----------LEKAKENNEH--------LKEE 331
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1296 TAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEE 1375
Cdd:COG4477  332 IERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKD 411
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679 1376 KNNlqeqqeeeeeARKNLEKqmlaLQAQLAEAKKKVDDDlgTIEGLEENKKKLLKDMESLSQRLEEK 1442
Cdd:COG4477  412 ELE----------ARENLER----LKSKLHEIKRYMEKS--NLPGLPETFLSLFFTAGHEIQDLMKE 462
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
1022-1264 5.29e-07

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 54.55  E-value: 5.29e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1022 EDQNSKFLKEKKLMEdRIAECTSQLAEEEEKAKNLAKLKNKQEmmITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQ 1101
Cdd:PRK05771   39 ELSNERLRKLRSLLT-KLSEALDKLRSYLPKLNPLREEKKKVS--VKSLEELIKDVEEELEKIEKEIKELEEEISELENE 115
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1102 IAELQAQIEELKIqLAKKEEELQaaLARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNK-------AEKQKRD 1174
Cdd:PRK05771  116 IKELEQEIERLEP-WGNFDLDLS--LLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYvyvvvvvLKELSDE 192
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1175 LSEELEALKTELEDTLDTTAAQQELRTKrEQEVAELKKAIEEEtknhEAQIQEIRQRHATALEELSEQLEQAkRFKANLE 1254
Cdd:PRK05771  193 VEEELKKLGFERLELEEEGTPSELIREI-KEELEEIEKERESL----LEELKELAKKYLEELLALYEYLEIE-LERAEAL 266
                         250
                  ....*....|
gi 45382679  1255 KNkqGLESDN 1264
Cdd:PRK05771  267 SK--FLKTDK 274
DUF812 pfam05667
Protein of unknown function (DUF812); This family consists of several eukaryotic proteins of ...
1489-1752 6.04e-07

Protein of unknown function (DUF812); This family consists of several eukaryotic proteins of unknown function.


Pssm-ID: 428574 [Multi-domain]  Cd Length: 601  Bit Score: 54.63  E-value: 6.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1489 AEEKNISARYAEERDRAeaeaREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRT- 1567
Cdd:pfam05667  226 WNSQGLASRLTPEEYRK----RKRTKLLKRIAEQLRSAALASTEATSGASRSKQDLAELLSSFGGSSTTDTNLTKGSRFt 301
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1568 ----LEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFErDLQAR-DEQNEEKKRML--VKQVRELEAELEDER 1640
Cdd:pfam05667  302 htekLQFTNEEAPAATSSPPTKAETEEELQQQREEELEELQEQLE-ELESSiEELEKEIKKLEssIKQVEEELEELKEQN 380
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1641 KQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQREL-EEARASRDEIFAQSKESEKKL---KGL 1716
Cdd:pfam05667  381 EELEKQYKVKKKTLDLLPDAEENIAKLQALVEASAQRLVELAGQWEKHRVPLiEEYRALKEAKSNKESESQRKLeeiKEL 460
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 45382679   1717 EAEILQLQEEFAASERARRHAEQERDELADEIANSA 1752
Cdd:pfam05667  461 REKIKEVAEEARSKEELYKQLVAEYERLPKDVNRSA 496
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
1396-1961 7.57e-07

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 54.67  E-value: 7.57e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1396 QMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLlKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMV---------- 1465
Cdd:TIGR00606  225 QITSKEAQLESSREIVKSYENELDPLKNRLKEI-EHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEkvfqgtdeql 303
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1466 -DLDHQRQIVSNlEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKEtkaLSLARALEEALEAKEEFERQNKQLRADM 1544
Cdd:TIGR00606  304 nDLYHNHQRTVR-EKERELVDCQRELEKLNKERRLLNQEKTELLVEQGR---LQLQADRHQEHIRARDSLIQSLATRLEL 379
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1545 EDLMSSKDDVG--KNVHELEKskRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDlQARDEQNEEKK 1622
Cdd:TIGR00606  380 DGFERGPFSERqiKNFHTLVI--ERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELK-KEILEKKQEEL 456
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1623 RMLVKQVRELEAELEDERKQRAlavaAKKKMEMDLKDLEgqieaankaRDEAIKQLRKLQAQMKDYQRELEEARASRDEI 1702
Cdd:TIGR00606  457 KFVIKELQQLEGSSDRILELDQ----ELRKAERELSKAE---------KNSLTETLKKEVKSLQNEKADLDRKLRKLDQE 523
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1703 FAQSKESEKKLKGLEaeiLQLQEEFAASERARRHAEQERDELADEIANSASGKS------ALLDEKRRLEARIAQLEEEL 1776
Cdd:TIGR00606  524 MEQLNHHTTTRTQME---MLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQledwlhSKSKEINQTRDRLAKLNKEL 600
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1777 EEEQSNMELLNERFRKTTLQVDTLNSELAgersAAQKSENARQQLERQNKELKAKlqelegsvkSKFKATISTLEAKIAQ 1856
Cdd:TIGR00606  601 ASLEQNKNHINNELESKEEQLSSYEDKLF----DVCGSQDEESDLERLKEEIEKS---------SKQRAMLAGATAVYSQ 667
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1857 LEEQLEQEAKERAAANKLVRRTEKKLKEVFMQVEDERRHADQYKEQMEKANARMKqlKRQLEEAEEEATRANASRRKlQR 1936
Cdd:TIGR00606  668 FITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKE--KRRDEMLGLAPGRQSIIDLK-EK 744
                          570       580
                   ....*....|....*....|....*
gi 45382679   1937 ELDDATEANEGLSREVSTLKNRLRR 1961
Cdd:TIGR00606  745 EIPELRNKLQKVNRDIQRLKNDIEE 769
mukB PRK04863
chromosome partition protein MukB;
1353-1739 8.73e-07

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 54.58  E-value: 8.73e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1353 ELLQEETRQKLNLSSRIRQLEEEK---NNLQEQQEEEEEARKNLEKQMLALQAQLAEAKkkvdddlgTIEGLEENKKKLL 1429
Cdd:PRK04863  283 VHLEEALELRRELYTSRRQLAAEQyrlVEMARELAELNEAESDLEQDYQAASDHLNLVQ--------TALRQQEKIERYQ 354
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1430 KDMESLSQRLEEKAMA-------YDKLEKTKNRLQQELDDLMVDL-DHQ-------------RQIVSNLEKKQKKFDQML 1488
Cdd:PRK04863  355 ADLEELEERLEEQNEVveeadeqQEENEARAEAAEEEVDELKSQLaDYQqaldvqqtraiqyQQAVQALERAKQLCGLPD 434
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1489 AEEKNISARYAEERDRAEA---EAREKETKaLSLARALEEALEAKEEFERqnkQLRADMEdlMSSKDDVGKNVHELEKSK 1565
Cdd:PRK04863  435 LTADNAEDWLEEFQAKEQEateELLSLEQK-LSVAQAAHSQFEQAYQLVR---KIAGEVS--RSEAWDVARELLRRLREQ 508
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1566 RTLEQQVEEMRTQLEELEDELQATEDAklrlevnmQAMKAQFERDLQARDEQNEEKKRMLvkqvRELEAELEDERKQRAL 1645
Cdd:PRK04863  509 RHLAEQLQQLRMRLSELEQRLRQQQRA--------ERLLAEFCKRLGKNLDDEDELEQLQ----EELEARLESLSESVSE 576
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1646 AVAAKKKMEMDLKDLEGQIEAANK------ARDEAIKQLRK-----------LQAQMKDYQRELEEARASRDEIFAQSKE 1708
Cdd:PRK04863  577 ARERRMALRQQLEQLQARIQRLAArapawlAAQDALARLREqsgeefedsqdVTEYMQQLLERERELTVERDELAARKQA 656
                         410       420       430
                  ....*....|....*....|....*....|..
gi 45382679  1709 sekklkgLEAEILQL-QEEFAASERARRHAEQ 1739
Cdd:PRK04863  657 -------LDEEIERLsQPGGSEDPRLNALAER 681
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
835-1268 8.75e-07

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 54.20  E-value: 8.75e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    835 KAFAKKQQQLSALKILQRNCAAY-----LKLRHWQWWRVFTKVKPLLQVTRQEEELQAKDEELMKVKEKQTKVEAELEEM 909
Cdd:TIGR00618  426 LAHAKKQQELQQRYAELCAAAITctaqcEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCP 505
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    910 ERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQ 989
Cdd:TIGR00618  506 LCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKED 585
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    990 LDEEEGARQKLQLE-KVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQE---M 1065
Cdd:TIGR00618  586 IPNLQNITVRLQDLtEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVRehaL 665
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1066 MITDLEER-LKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVI 1144
Cdd:TIGR00618  666 SIRVLPKElLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSL 745
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1145 RELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDtldttaaQQELRTKREQEVAELKKAIEEETKNHEA- 1223
Cdd:TIGR00618  746 KELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQF-------FNRLREEDTHLLKTLEAEIGQEIPSDEDi 818
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|.
gi 45382679   1224 ------QIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELA 1268
Cdd:TIGR00618  819 lnlqceTLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
PLN02939 PLN02939
transferase, transferring glycosyl groups
880-1219 1.05e-06

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 54.14  E-value: 1.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   880 RQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLleEKNILAEQlqaetelfaeaeemRARLAAKkQELEEILHdle 959
Cdd:PLN02939  104 RDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNA--EKNILLLN--------------QARLQAL-EDLEKILT--- 163
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   960 srveeeeernqilqnEKKKMQGHIQDLEEQLDEEeGARQKLqlekvTAEAKIKkmeeeILLLEDQNSKFLKEKKLMEDRI 1039
Cdd:PLN02939  164 ---------------EKEALQGKINILEMRLSET-DARIKL-----AAQEKIH-----VEILEEQLEKLRNELLIRGATE 217
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1040 AECTSQLAEEEE--KAKNLAkLKNKQEMM------ITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAqiee 1111
Cdd:PLN02939  218 GLCVHSLSKELDvlKEENML-LKDDIQFLkaelieVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSP---- 292
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1112 LKIQ-LAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRdLSEELEALKTELEDTL 1190
Cdd:PLN02939  293 LQYDcWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVEL-LQQKLKLLEERLQASD 371
                         330       340
                  ....*....|....*....|....*....
gi 45382679  1191 DTTAAQQELRTKREQEVAELKKAIEEETK 1219
Cdd:PLN02939  372 HEIHSYIQLYQESIKEFQDTLSKLKEESK 400
mukB PRK04863
chromosome partition protein MukB;
1047-1311 1.06e-06

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 54.19  E-value: 1.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1047 AEEEEKAKNLAKLKNKQEMMITDLEErlkKEEKTRQELEKAKRKLDG-----------ETTDLQDQIAELQAQIEELkiq 1115
Cdd:PRK04863  833 ADPEAELRQLNRRRVELERALADHES---QEQQQRSQLEQAKEGLSAlnrllprlnllADETLADRVEEIREQLDEA--- 906
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1116 lakkeEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELE-----ALKTELEDTL 1190
Cdd:PRK04863  907 -----EEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQrrahfSYEDAAEMLA 981
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1191 DTTAAQQELRTKREQEVAELKKAiEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEK----NKQGLE----S 1262
Cdd:PRK04863  982 KNSDLNEKLRQRLEQAEQERTRA-REQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDlgvpADSGAEerarA 1060
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 45382679  1263 DNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAE 1311
Cdd:PRK04863 1061 RRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMRE 1109
mukB PRK04863
chromosome partition protein MukB;
1081-1944 1.11e-06

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 54.19  E-value: 1.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1081 RQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQlakkEEELQAA---LARGDEEAVQKNNalkvIRELQAQIAELQED 1157
Cdd:PRK04863  292 RRELYTSRRQLAAEQYRLVEMARELAELNEAESDL----EQDYQAAsdhLNLVQTALRQQEK----IERYQADLEELEER 363
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1158 LESEKASRNKA-------EKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKA------IEEETKNHEAQ 1224
Cdd:PRK04863  364 LEEQNEVVEEAdeqqeenEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAkqlcglPDLTADNAEDW 443
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1225 IQEIR---QRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEH-KRKKLDAQVQELTAKVT 1300
Cdd:PRK04863  444 LEEFQakeQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLrEQRHLAEQLQQLRMRLS 523
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1301 EGERlRVELAEKANKLQNELDNVSSLLEEAEKkgikfakDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEknnlq 1380
Cdd:PRK04863  524 ELEQ-RLRQQQRAERLLAEFCKRLGKNLDDED-------ELEQLQEELEARLESLSESVSEARERRMALRQQLEQ----- 590
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1381 eqQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENkkkllkdMESLSQRLEEKAMAYDKLEKTKNRLQQEL 1460
Cdd:PRK04863  591 --LQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEY-------MQQLLERERELTVERDELAARKQALDEEI 661
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1461 DDLmvdldHQRQiVSNLEKKQKKFDQM-------------LAEEKNISARYAEER------DraeaeareketkaLSLAR 1521
Cdd:PRK04863  662 ERL-----SQPG-GSEDPRLNALAERFggvllseiyddvsLEDAPYFSALYGPARhaivvpD-------------LSDAA 722
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1522 aleealeakeefeRQNKQLRADMEDLM------SSKDDVGKNVHELEK------SKRTL----------------EQQVE 1573
Cdd:PRK04863  723 -------------EQLAGLEDCPEDLYliegdpDSFDDSVFSVEELEKavvvkiADRQWrysrfpevplfgraarEKRIE 789
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1574 EMRTQLEELEDELqatedAKLRLEVN-MQAMKAQFERDLQ-----ARDEQNEEKKRMLVKQVRELEAELED----ERKQR 1643
Cdd:PRK04863  790 QLRAEREELAERY-----ATLSFDVQkLQRLHQAFSRFIGshlavAFEADPEAELRQLNRRRVELERALADhesqEQQQR 864
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1644 ALAVAAKKKMEMdLKDLEGQIEAAnkARDEAIKQLRKLQAQMKdyqrELEEARASRDE---IFAQSKESEKKLKGLEAEI 1720
Cdd:PRK04863  865 SQLEQAKEGLSA-LNRLLPRLNLL--ADETLADRVEEIREQLD----EAEEAKRFVQQhgnALAQLEPIVSVLQSDPEQF 937
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1721 LQLQEEFAASERARRHAEQERDELADEIANSASGKSAllDEKRRLEARIAqleeeleeeqsnmelLNERFRkttlqvdtl 1800
Cdd:PRK04863  938 EQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYE--DAAEMLAKNSD---------------LNEKLR--------- 991
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1801 nselagersaaQKSENARQQLERQNKELKAKLQELE--GSVKSKFKATISTLEAKIAQLEEQLE-------QEAKERAAA 1871
Cdd:PRK04863  992 -----------QRLEQAEQERTRAREQLRQAQAQLAqyNQVLASLKSSYDAKRQMLQELKQELQdlgvpadSGAEERARA 1060
                         890       900       910       920       930       940       950
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679  1872 NKlvrrtekklKEVFMQVEDERRHADQYKEQMEKANARMKQLKRQLeeaeeeatranasrRKLQRELDDATEA 1944
Cdd:PRK04863 1061 RR---------DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKL--------------RKLERDYHEMREQ 1110
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
1560-1838 1.16e-06

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 53.59  E-value: 1.16e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1560 ELEKSKRTLEQQVEEM--RTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARdeQNEEKKR-----------MLV 1626
Cdd:pfam17380  297 EQERLRQEKEEKAREVerRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERI--RQEERKRelerirqeeiaMEI 374
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1627 KQVRELE--------------AELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQREL 1692
Cdd:pfam17380  375 SRMRELErlqmerqqknervrQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLE 454
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1693 EEARASRDEIFAQsKESEKKLKGLEAEILQLQEEFAASERaRRHAEQERDEladeiansasGKSALLDEKRR---LEARI 1769
Cdd:pfam17380  455 EQERQQQVERLRQ-QEEERKRKKLELEKEKRDRKRAEEQR-RKILEKELEE----------RKQAMIEEERKrklLEKEM 522
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679   1770 AQLEEELEEEQSNMELLNERFRKTTL----QVDTLNSELAGERSAAQKSENARQQLeRQNKELKAKLQELEGS 1838
Cdd:pfam17380  523 EERQKAIYEEERRREAEEERRKQQEMeerrRIQEQMRKATEERSRLEAMEREREMM-RQIVESEKARAEYEAT 594
ERM pfam00769
Ezrin/radixin/moesin family; This family of proteins contain a band 4.1 domain (pfam00373), at ...
1004-1193 1.23e-06

Ezrin/radixin/moesin family; This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins.


Pssm-ID: 425860 [Multi-domain]  Cd Length: 247  Bit Score: 51.86  E-value: 1.23e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1004 KVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQE 1083
Cdd:pfam00769    1 REEAEREKQELEERLKQYEEETRKAQEELEESEETAELLEEKLRVAEEEAELLEQKAQEAEEEKERLEESAEMEAEEKEQ 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1084 LEKAKRKLDGETTDLQD-------QIAELQAQIEELKIQLAKKEEELQAAL----------ARGDEEAVQKNNALKVIRE 1146
Cdd:pfam00769   81 LERELREAQEEVARLEEeserkeeEAERLQEELEEAREEEEEAKEKLLAAStspshhhseeSENEDDEEEEESYEGGSAE 160
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 45382679   1147 LQAQIAELQEDLESEKASRNKAEKQKRdLSEELEALKTELEDTLDTT 1193
Cdd:pfam00769  161 LSNDGDMDQLSDRIEEERVTEAEKNER-LQKQLKALKSELAQARDET 206
PRK01156 PRK01156
chromosome segregation protein; Provisional
1396-1943 1.29e-06

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 53.75  E-value: 1.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1396 QMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEkamaYDKLEKTKNRLQQELDDLMVDLDHQRQIVS 1475
Cdd:PRK01156  139 EMDSLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISN----IDYLEEKLKSSNLELENIKKQIADDEKSHS 214
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1476 NLEKK-----------QKKFDQMLAEEKNISARyAEERDRAEAEAREKETKalslaraleealeaKEEFERQNKQLRADM 1544
Cdd:PRK01156  215 ITLKEierlsieynnaMDDYNNLKSALNELSSL-EDMKNRYESEIKTAESD--------------LSMELEKNNYYKELE 279
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1545 EDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVnMQAMKAQFERDLQARDEQN------ 1618
Cdd:PRK01156  280 ERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSV-LQKDYNDYIKKKSRYDDLNnqilel 358
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1619 ---EEKKRMLVKQVRELEAELEDERKQR----ALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRE 1691
Cdd:PRK01156  359 egyEMDYNSYLKSIESLKKKIEEYSKNIermsAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALREN 438
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1692 LEEARASRDEIFAQS------------------KESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSAS 1753
Cdd:PRK01156  439 LDELSRNMEMLNGQSvcpvcgttlgeeksnhiiNHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSI 518
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1754 GKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRktTLQVDTLNSELAGERSA-AQKSENARQQLERQNKELKAKL 1832
Cdd:PRK01156  519 NEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYK--SLKLEDLDSKRTSWLNAlAVISLIDIETNRSRSNEIKKQL 596
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1833 QELEG---SVKSKFKATISTLEAKIAQLEEQLeqeakeraaanKLVRRTEKKLKEVFMQVEDERRHADQYKEQMEKANAR 1909
Cdd:PRK01156  597 NDLESrlqEIEIGFPDDKSYIDKSIREIENEA-----------NNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSI 665
                         570       580       590
                  ....*....|....*....|....*....|....
gi 45382679  1910 MKQLKRQLEEAEEEATRANASRRKLQRELDDATE 1943
Cdd:PRK01156  666 IPDLKEITSRINDIEDNLKKSRKALDDAKANRAR 699
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1561-1898 1.33e-06

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 53.10  E-value: 1.33e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1561 LEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERdlqARDEQneekkrmlvKQVRELEAELedeR 1640
Cdd:COG4372   65 LNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQK---ARQER---------EAVRQELAAA---R 129
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1641 KQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAE- 1719
Cdd:COG4372  130 QNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRa 209
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1720 --ILQLQEEFAASERARRHAEQERDELADEIANsasgksalldekrrLEARIAQLEEELEEEQSNMELLNErfrkttlQV 1797
Cdd:COG4372  210 naAQARTEELARRAAAAQQTAQAIQQRDAQISQ--------------KAQQIAARAEQIRERERQLQRLET-------AQ 268
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1798 DTLNSELAGERSAAQKSENARQQlerqnkelkaKLQELEGSVKSKFKATISTLEAkIAQLEEQLEQEAKeRAAANKLVR- 1876
Cdd:COG4372  269 ARLEQEVAQLEAYYQAYVRLRQQ----------AAATQRGQVLAGAAQRVAQAQA-QAQAQAQLLSSAN-RPAALRLRRs 336
                        330       340
                 ....*....|....*....|...
gi 45382679 1877 -RTEKKLKEVFMQVEDERRHADQ 1898
Cdd:COG4372  337 pRRGRRQRPVTRHTTRRRRPATR 359
PLN03229 PLN03229
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
1102-1379 1.58e-06

acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional


Pssm-ID: 178768 [Multi-domain]  Cd Length: 762  Bit Score: 53.32  E-value: 1.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1102 IAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKnnaLKviRELQAQIAE------LQEDLESEKASRNKAEKQK--- 1172
Cdd:PLN03229  431 VRELEGEVEKLKEQILKAKESSSKPSELALNEMIEK---LK--KEIDLEYTEaviamgLQERLENLREEFSKANSQDqlm 505
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1173 -RDLSEELEALKTELEDTLDTTAAQQELRTKRE--QEVAELKKAIEEETKNHEAQiQEIRQRHATALEElSEQLEQAKRF 1249
Cdd:PLN03229  506 hPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDmlNEFSRAKALSEKKSKAEKLK-AEINKKFKEVMDR-PEIKEKMEAL 583
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1250 KANLEKNKQGLESD-NKELACEV-KVLQQVKAESEHKRKKLDAQVQELTAK--VTEGERLRVELAEKANKLQNELD---- 1321
Cdd:PLN03229  584 KAEVASSGASSGDElDDDLKEKVeKMKKEIELELAGVLKSMGLEVIGVTKKnkDTAEQTPPPNLQEKIESLNEEINkkie 663
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45382679  1322 ---NVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNL 1379
Cdd:PLN03229  664 rviRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEEL 724
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
1496-1868 1.60e-06

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 52.97  E-value: 1.60e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1496 ARYAEERDRaEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEM 1575
Cdd:pfam07888   49 AQEAANRQR-EKEKERYKRDREQWERQRRELESRVAELKEELRQSREKVEELEEKYKELSRSGEELAEEKDALLAQRAES 127
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1576 RTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMlvkQVRELEAELEDERKQRALAVAAKKKMEM 1655
Cdd:pfam07888  128 EARIRELEEDIKTLTQRVLERETELERMKERVKKAGAQRKEEEAERKQL---QAKLQQTEEELRSLSKEFQELRNSLAQR 204
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1656 DLKDLEGQIEAANkardeaiKQLRKLQAQMKDYQRE--LEEARASRDEIFAqskeSEKKLKGLEAEIlqlqeEFAASERA 1733
Cdd:pfam07888  205 DTQVLQLQDTITT-------LTQKLTTAHRKEAENEalLEELRSLQERLNA----SERKVEGLGEEL-----SSMAAQRD 268
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1734 RRHAEQERDEL-ADEIANSASGKSALLDEKRrleariAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSAAQ 1812
Cdd:pfam07888  269 RTQAELHQARLqAAQLTLQLADASLALREGR------ARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMERE 342
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679   1813 KSE---------NARQQLE--RQNKELKAKLQELEGSvKSKFKATISTLEAKIAQLEEQLEQEAKER 1868
Cdd:pfam07888  343 KLEvelgrekdcNRVQLSEsrRELQELKASLRVAQKE-KEQLQAEKQELLEYIRQLEQRLETVADAK 408
NtpI COG1269
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];
1016-1244 1.60e-06

Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];


Pssm-ID: 224188 [Multi-domain]  Cd Length: 660  Bit Score: 53.13  E-value: 1.60e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1016 EEILLLEDQNSKFLKEKKLMEDRIAEC-TSQLAEEEEKAKNLAKLKnkqemmitDLEERLKKEEKTRQELEKAKRKLDGE 1094
Cdd:COG1269   50 KVAEVAQISLSSLLSEVLDYLRSVKGLeGRLFILPEEVEKLEAELK--------SLEEVIKPAEKFSSEVEELTRKLEER 121
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1095 TTDLQDQIAELQAQIEELKIqLAKKEEELqAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRN------KA 1168
Cdd:COG1269  122 LSELDEELEDLEDLLEELEP-LAYLDFDL-SLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEASvvivvaHG 199
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679 1169 EKQKRDLSEELEALKTELedtldttAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIR---QRHATALEELSEQLE 1244
Cdd:COG1269  200 AEDLDKVSKILNELGFEL-------YEVPEFDGGPSELISELEEVIAEIQDELESLRSELEalaEKIAEELLAVREILE 271
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
1081-1889 1.64e-06

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 53.35  E-value: 1.64e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1081 RQELEKAKRKLDGEttdlQDQIAELQAQIEELKIQLAKKEEELQAALARgdEEAVQknNALK---VIRELQAQIAELQED 1157
Cdd:COG3096  292 RRELYTSRQQLAAE----QYRHVDMSRELAELNGAEGDLEADYQAASDH--LNLVQ--TALRqqeKIERYQADLEELTIR 363
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1158 LESEK-----ASRNKAEKQKRDLSEELE--ALKTELEDTLDTTAAQQELRTKREQEVAELKKA------IEEETKNHEAQ 1224
Cdd:COG3096  364 LEEQNevveeANERQEENEARAEAAELEvdELKSQLADYQQALDVQQTRAIQYQQAIAALERAkelchlPDLTADSAEEW 443
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1225 IQEIRQRHATALE---ELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQ-VQELTAKVT 1300
Cdd:COG3096  444 LETFQAKEEEATEkllSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAWDVARELLREGPDQRHLAEqVQPLRMRLS 523
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1301 EGERlRVELAEKANKLQNELDNVSSLLEEAEKkgikFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQ 1380
Cdd:COG3096  524 ELEQ-RLRQQQSAERLLADFCKRQGKNLDAEE----LEALHQELEALIESLSDSVSNAREQRMALRQEQEQLQSRIQSLM 598
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1381 EQQEEEEEARKNLEKqmlaLQAQLAEAKkkvdddlgtiegleENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQEL 1460
Cdd:COG3096  599 QRAPVWLAAQNALEQ----LSEQSGEEF--------------TDSQDVTEYMQQLLEREREATVERDELGARKNALDEEI 660
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1461 DDLMVDLDHQRQIVSNLEKK------QKKFDQMLAEEKN-ISARYAEERdraeaeaREKETKALSLARAleealeakeef 1533
Cdd:COG3096  661 ERLSQPGGSEDQRLNALAERfggvllSEIYDDVTIEDAPyFSALYGPSR-------HAIVVPDLSQVKE----------- 722
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1534 erQNKQLRADMEDLM------SSKDDVGKNVHELEK------SKRTL----------------EQQVEEMRTQLEELede 1585
Cdd:COG3096  723 --HLEGLTDCPEDLYliegdpQSFDDSVFSVDELEKavvvkiADRQWrysrfpeiplfgraarEQRLESLHAERDVL--- 797
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1586 lqATEDAKLRLEVN-MQAMKAQFERDLQ-----ARDEQNEEKKRMLVKQVRELEAEL----EDERKQRALAVAAKKKMEM 1655
Cdd:COG3096  798 --SERHATLSFDVQkTQRLHQAFSRFIGshlavAFEADPEAEIRQLNSRRNELERALsnheNDNQQQRIQFDQAKEGVTA 875
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1656 dlkdLEGQIEAANKARDEAikqlrkLQAQMKDYQRELEEAraSRDEIFAQS-----KESEKKLKGLEAE---ILQLQEEF 1727
Cdd:COG3096  876 ----LNRLIPQLNLLADES------LADRVEEIRERLDEA--QEAARFIQQhgntlSKLEPIASVLQSDpeqFEQLKEDY 943
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1728 AASERARRHAEQERDELADEIANSA----SGKSALLDEKRRLEARIAQLEEELeeeQSNMELLNERFRKTTLQVDTLNSE 1803
Cdd:COG3096  944 AQAQQMQRQARQQAFALTEVVQRRAhfsySDSAEMLSENSDLNEKLRQRLEQA---EAERTRAREQLRQHQAQLSQYNQV 1020
                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1804 LAGERSAAQKSENARQQLERQNKEL----KAKLQELEGSVKSKFKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTE 1879
Cdd:COG3096 1021 LASLKSSYDTKKELLNELQQELQDIgvraDSGAEERARIRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLE 1100
                        890
                 ....*....|
gi 45382679 1880 KKLKEVFMQV 1889
Cdd:COG3096 1101 RDYFEMREQV 1110
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
1308-1939 1.68e-06

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 53.19  E-value: 1.68e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1308 ELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEE--TRQKLNLSSRIRQLEEEKNNLQEQQEE 1385
Cdd:pfam05483  100 ELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENnaTRHLCNLLKETCARSAEKTKKYEYERE 179
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1386 EEEA-----RKNLEKQMLALQAQLAEAKK-------KVDDDLGTIEGLEENKKKLLKDmeslsqrlEEKAMAYDKLEKTK 1453
Cdd:pfam05483  180 ETRQvymdlNNNIEKMILAFEELRVQAENarlemhfKLKEDHEKIQHLEEEYKKEIND--------KEKQVSLLLIQITE 251
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1454 NrlQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEF 1533
Cdd:pfam05483  252 K--ENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQL 329
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1534 ERQNKqlrADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQ--ATEDAKLRLEVN-MQAMKAQFERD 1610
Cdd:pfam05483  330 TEEKE---AQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKiiTMELQKKSSELEeMTKFKNNKEVE 406
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1611 LQARDEQNEEKKRMLV--KQVRELEAELEDERKQRALAVAAKKKmemDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDY 1688
Cdd:pfam05483  407 LEELKKILAEDEKLLDekKQFEKIAEELKGKEQELIFLLQAREK---EIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKE 483
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1689 QRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAaserarrHAEQERDELADEIANSASGKSALLDEKRRLEAR 1768
Cdd:pfam05483  484 KLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDII-------NCKKQEERMLKQIENLEEKEMNLRDELESVREE 556
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1769 IAQLEEELE----EEQSNMELLNERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKlqeleGSVKSKfk 1844
Cdd:pfam05483  557 FIQKGDEVKckldKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKK-----GSAENK-- 629
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1845 aTISTLEAKIAQLEEQLEqeakerAAANKLVRRTEKKLKEVfmqvEDERRHADQYKEQMEKANARMKQLKrqleeaeeea 1924
Cdd:pfam05483  630 -QLNAYEIKVNKLELELA------SAKQKFEEIIDNYQKEI----EDKKISEEKLLEEVEKAKAIADEAV---------- 688
                          650
                   ....*....|....*
gi 45382679   1925 tranasrrKLQRELD 1939
Cdd:pfam05483  689 --------KLQKEID 695
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
1113-1371 1.70e-06

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 53.52  E-value: 1.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1113 KIQLAKKEEELQAALARGDEEAVQknnalkvirELQAQIAELQEdlesEKASRNKAEKQKR------DLSEELEALKTEL 1186
Cdd:PRK10929   25 EKQITQELEQAKAAKTPAQAEIVE---------ALQSALNWLEE----RKGSLERAKQYQQvidnfpKLSAELRQQLNNE 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1187 ED---TLDTTAAQQELrtkrEQEVAELKKAIEEETknHEAQIQEIRQRH-ATALEELSEQLEQAKRFKANLEKNKQGLES 1262
Cdd:PRK10929   92 RDeprSVPPNMSTDAL----EQEILQVSSQLLEKS--RQAQQEQDRAREiSDSLSQLPQQQTEARRQLNEIERRLQTLGT 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1263 DNKELACEVKVLQQvkAESEHKRKKLD----AQV-----QELTakvtegeRLRVELAEK-ANKLQNELDNVSSLL----- 1327
Cdd:PRK10929  166 PNTPLAQAQLTALQ--AESAALKALVDelelAQLsannrQELA-------RLRSELAKKrSQQLDAYLQALRNQLnsqrq 236
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 45382679  1328 ---EEAEKKGIKFAKDAASLE----SQLQDTQELLQE--ETRQKLNL-SSRIRQ 1371
Cdd:PRK10929  237 reaERALESTELLAEQSGDLPksivAQFKINRELSQAlnQQAQRMDLiASQQRQ 290
mukB PRK04863
chromosome partition protein MukB;
914-1768 2.59e-06

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 52.65  E-value: 2.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   914 QQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEEERNQIlqnekKKMQGHIQDLEEQLDEE 993
Cdd:PRK04863  293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKI-----ERYQADLEELEERLEEQ 367
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   994 EGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKF-----LKEKKLME--------DRIAECTSQLAEEEEKAKN-LAKL 1059
Cdd:PRK04863  368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYqqaldVQQTRAIQyqqavqalERAKQLCGLPDLTADNAEDwLEEF 447
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1060 KNKQEMM---ITDLEERLKKEEKTRQELEKAK---RKLDGETT--DLQDQIAELQAQIEELKIQlAKKEEELQAALARGD 1131
Cdd:PRK04863  448 QAKEQEAteeLLSLEQKLSVAQAAHSQFEQAYqlvRKIAGEVSrsEAWDVARELLRRLREQRHL-AEQLQQLRMRLSELE 526
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1132 EEAVQKNNALKVIRELQaQIAELQEDLESEkasrnkaekqkrdLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELK 1211
Cdd:PRK04863  527 QRLRQQQRAERLLAEFC-KRLGKNLDDEDE-------------LEQLQEELEARLESLSESVSEARERRMALRQQLEQLQ 592
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1212 KAIEEetknHEAQIQEIRQRHAtALEELSEQleqakrFKANLEkNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQ 1291
Cdd:PRK04863  593 ARIQR----LAARAPAWLAAQD-ALARLREQ------SGEEFE-DSQDVTEYMQQLLERERELTVERDELAARKQALDEE 660
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1292 VQELTAKVT-EGERLRVeLAEKANK-----------------------------LQNELDNVSSLLEEAEK--------K 1333
Cdd:PRK04863  661 IERLSQPGGsEDPRLNA-LAERFGGvllseiyddvsledapyfsalygparhaiVVPDLSDAAEQLAGLEDcpedlyliE 739
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1334 GIKFAKDAASLESQLQDTQELLQEETRQkLNLS--------------SRIRQLEEEKNNLQEQQEEEEEARKNLE----- 1394
Cdd:PRK04863  740 GDPDSFDDSVFSVEELEKAVVVKIADRQ-WRYSrfpevplfgraareKRIEQLRAEREELAERYATLSFDVQKLQrlhqa 818
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1395 -KQMLALQAQLAEAkkkVDDDlgtiegleenkkkllKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLmvdldhqRQI 1473
Cdd:PRK04863  819 fSRFIGSHLAVAFE---ADPE---------------AELRQLNRRRVELERALADHESQEQQQRSQLEQA-------KEG 873
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1474 VSNLEKKQKKFDqMLAEEKNIsaryaeerDRAEaEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLmsskDD 1553
Cdd:PRK04863  874 LSALNRLLPRLN-LLADETLA--------DRVE-EIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQF----EQ 939
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1554 VGKNVHELEKSKRTLEQQVEEMrTQLEELEDELqATEDAklrleVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELE 1633
Cdd:PRK04863  940 LKQDYQQAQQTQRDAKQQAFAL-TEVVQRRAHF-SYEDA-----AEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQ 1012
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1634 AELeDERKQRalavaakkkmemdLKDLEGQIEAANKARDEAIKQLRKLQAQmkdYQRELEE-ARASRDEIFAQSKESEKK 1712
Cdd:PRK04863 1013 AQL-AQYNQV-------------LASLKSSYDAKRQMLQELKQELQDLGVP---ADSGAEErARARRDELHARLSANRSR 1075
                         890       900       910       920       930       940
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 45382679  1713 LKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSALL------DEKRRLEAR 1768
Cdd:PRK04863 1076 RNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLrlvkdnGVERRLHRR 1137
Mitofilin pfam09731
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ...
1006-1244 2.83e-06

Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.


Pssm-ID: 430783 [Multi-domain]  Cd Length: 618  Bit Score: 52.45  E-value: 2.83e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1006 TAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTS----QLAEEEEKAKNLAKLKNKqemmITDLEErlKKEEKTR 1081
Cdd:pfam09731  187 KAEALAEKLKEVINLAKQSEEEAAPPLLDAAPETPPKLPehldNVEEKVEKAQSLAKLVDQ----YKELVA--SERIVFQ 260
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1082 QELEK--------AKRKLDGETTDLQDQIAELQAQIEELKIQLA--KKEEELQAALARGDEEAVQKNNALKVIRELQAQI 1151
Cdd:pfam09731  261 QELVSifpdiipvLKEDNLLSNDDLNSLIAHAHREIDQLSKKLAelKKREEKHIERALEKQKEELDKLAEELSARLEEVR 340
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1152 A--ELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEvAELKKAIEEETKNHEAQIQEIr 1229
Cdd:pfam09731  341 AadEAQLRLEFEREREEIRESYEEKLRTELERQAEAHEEHLKDVLVEQEIELQREFL-QDIKEKVEEERAGRLLKLNEL- 418
                          250
                   ....*....|....*
gi 45382679   1230 qrhATALEELSEQLE 1244
Cdd:pfam09731  419 ---LANLKGLEKATS 430
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
892-1137 3.33e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 51.65  E-value: 3.33e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  892 LMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVeeeeernQI 971
Cdd:COG4942   33 AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL-------NA 105
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  972 LQNEKkkmqghiqdleeqldeeegARQKLQLEKVTAEAKIKKMEEEILLL----EDQNSKFL--------KEKKLMEDRI 1039
Cdd:COG4942  106 LEVQE-------------------REQRRRLAEQLAALQRSGRNPPPALLvspeDAQRSVRLaiyygalnPARAERIDAL 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1040 AECTSQLAEEEEKaknLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKK 1119
Cdd:COG4942  167 KATLKQLAAVRAE---IAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASA 243
                        250
                 ....*....|....*...
gi 45382679 1120 EEelQAALARGDEEAVQK 1137
Cdd:COG4942  244 EA--AAAKAREAAAAAEA 259
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
880-1188 3.51e-06

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 52.53  E-value: 3.51e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    880 RQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQL-QAETELFAEAEEMRARLAAKKQELeeilhDL 958
Cdd:pfam12128  622 AAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKnKALAERKDSANERLNSLEAQLKQL-----DK 696
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    959 ESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEeillledQNSKFLKEKKLMEDR 1038
Cdd:pfam12128  697 KHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALET-------WYKRDLASLGVDPDV 769
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1039 IAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEektRQELEKAKRKLDGETTDLQDQiaeLQAQIEELKIQLAK 1118
Cdd:pfam12128  770 IAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQR---RPRLATQLSNIERAISELQQQ---LARLIADTKLRRAK 843
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679   1119 KEEELQAAlargDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQ------KRDLSEELEALKTELED 1188
Cdd:pfam12128  844 LEMERKAS----EKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERLaqledlKLKRDYLSESVKKYVEH 915
mukB PRK04863
chromosome partition protein MukB;
1339-1768 4.55e-06

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 51.88  E-value: 4.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1339 KDAASLESQLQDTQELLQEETRQKLNLSsriRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQlaEAKKKVDDDLgti 1418
Cdd:PRK04863  286 EEALELRRELYTSRRQLAAEQYRLVEMA---RELAELNEAESDLEQDYQAASDHLNLVQTALRQQ--EKIERYQADL--- 357
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1419 egleenkkkllkdmESLSQRLEEKAMA-------YDKLEKTKNRLQQELDDLMVDL-DHQ-------------RQIVSNL 1477
Cdd:PRK04863  358 --------------EELEERLEEQNEVveeadeqQEENEARAEAAEEEVDELKSQLaDYQqaldvqqtraiqyQQAVQAL 423
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1478 EKKQKKFDQMLAEEKNISARYAEERDRAEA---EAREKETKaLSLARALEEALEAKEEFERQnkqLRADMEdlMSSKDDV 1554
Cdd:PRK04863  424 ERAKQLCGLPDLTADNAEDWLEEFQAKEQEateELLSLEQK-LSVAQAAHSQFEQAYQLVRK---IAGEVS--RSEAWDV 497
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1555 GKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAklrlevnmQAMKAQFERDLQARDEQNEEKKRMLvkqvRELEA 1634
Cdd:PRK04863  498 ARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRA--------ERLLAEFCKRLGKNLDDEDELEQLQ----EELEA 565
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1635 ELEDERKQRALAVAAKKKMEMDLKDLEGQIEaankardeaikQLRKLQAQMKDYQRELEEARASRDEIFAQSKesekklk 1714
Cdd:PRK04863  566 RLESLSESVSEARERRMALRQQLEQLQARIQ-----------RLAARAPAWLAAQDALARLREQSGEEFEDSQ------- 627
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....
gi 45382679  1715 GLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEAR 1768
Cdd:PRK04863  628 DVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSEDPRLNALAER 681
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
905-1503 5.08e-06

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 51.98  E-value: 5.08e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    905 ELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEeilhdLESRVEEEEERNQILQNEKKKmqghiq 984
Cdd:TIGR01612 1487 ELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALA-----IKNKFAKTKKDSEIIIKEIKD------ 1555
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    985 dleeqldeeegARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMED--------------------RIAECts 1044
Cdd:TIGR01612 1556 -----------AHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDiqlslenfenkflkisdikkKINDC-- 1622
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1045 qLAEEEEKAKNLAKLK-NKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQdqiaELQAQIEELKIQLAKKEEEL 1123
Cdd:TIGR01612 1623 -LKETESIEKKISSFSiDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELD----ELDSEIEKIEIDVDQHKKNY 1697
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1124 QAALA-RGDEEAVQKNNALKVIRELqaqiaeLQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTK 1202
Cdd:TIGR01612 1698 EIGIIeKIKEIAIANKEEIESIKEL------IEPTIENLISSFNTNDLEGIDPNEKLEEYNTEIGDIYEEFIELYNIIAG 1771
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1203 REQEVAElkkaiEEETKNheaqiqEIRQRHATALEELSEQLEQAKRFKANLeknkqglesDNKElacevkvLQQVKAESE 1282
Cdd:TIGR01612 1772 CLETVSK-----EPITYD------EIKNTRINAQNEFLKIIEIEKKSKSYL---------DDIE-------AKEFDRIIN 1824
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1283 HKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVS---------------------SLLEEAEKKGIKFAKDA 1341
Cdd:TIGR01612 1825 HFKKKLDHVNDKFTKEYSKINEGFDDISKSIENVKNSTDENLlfdilnktkdayagiigkkyySYKDEAEKIFINISKLA 1904
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1342 ASLESQLQDTQEL-------------LQEETRQKL-------NLSSRIRQLEEEKNNLQEQQEEEEEARKNlEKQMLAL- 1400
Cdd:TIGR01612 1905 NSINIQIQNNSGIdlfdniniailssLDSEKEDTLkfipspeKEPEIYTKIRDSYDTLLDIFKKSQDLHKK-EQDTLNIi 1983
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1401 --QAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEE---------------KAMAYDKLEKTKNRLQQELDDL 1463
Cdd:TIGR01612 1984 feNQQLYEKIQASNELKDTLSDLKYKKEKILNDVKLLLHKFDElnklscdsqnydtilELSKQDKIKEKIDNYEKEKEKF 2063
                          650       660       670       680
                   ....*....|....*....|....*....|....*....|..
gi 45382679   1464 MVDLDHQ--RQIVSNLEKKQKKFDQMLAEEKNISARYAEERD 1503
Cdd:TIGR01612 2064 GIDFDVKamEEKFDNDIKDIEKFENNYKHSEKDNHDFSEEKD 2105
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
1003-1442 5.22e-06

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 51.65  E-value: 5.22e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1003 EKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRiaectsqlaEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQ 1082
Cdd:pfam05557   28 ARIELERKASALARQLERESDRNQELQKRIRLLEKR---------EAEAEEALREQAELNRLKKKNLEALNKKLNEKESQ 98
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1083 ELEKAKRKLDgettdLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQE------ 1156
Cdd:pfam05557   99 LADAREVISC-----LKNELSELRRQIQRQELELSSTNSELEELQERLDLQKAKAQEAEQLRQNLEAQQSSLAEaeqrik 173
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1157 -----------------DLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTK--REQEVAELKKAIEEE 1217
Cdd:pfam05557  174 elefeiqsqeqdseivkNSKSELARIPELERELERLREHNKHLNENIENKLLLKEEVEDLKRKleREEGYREELATLELE 253
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1218 TKNHEAQIQE---IRQRHATAL---EELSEQLEQAKRFKANLEKNKQGLESDnkelaceVKVLQQVKAESEHKRKKLDAQ 1291
Cdd:pfam05557  254 KEKLEQELKSwekLAQDTGLNLrspEDLSRRIEQLQQREITLKEENSSLTSS-------ARQLEKAQRELEQELAQYLKN 326
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1292 VQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKgIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQ 1371
Cdd:pfam05557  327 IEDLNKKLKRHKALVRRLQRRVLLLTKERDGMRAILESYDKE-LTPSNYSPQLLERIEEAEDMTQDMQAHNEEMEAQLSV 405
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45382679   1372 LEEEKNNLqeqqeeeeearkNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKlLKDMESLSQRLEEK 1442
Cdd:pfam05557  406 AEEELGGY------------KQQATTLERELQALRQQESLADPSYSKEEVDSLRRK-LETLEAERQRLREQ 463
Filament pfam00038
Intermediate filament protein;
1078-1355 5.43e-06

Intermediate filament protein;


Pssm-ID: 425436 [Multi-domain]  Cd Length: 313  Bit Score: 50.68  E-value: 5.43e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1078 EKTRQeLEKAKRKLDGETTDLQDQ---------------IAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALK 1142
Cdd:pfam00038   18 DKVRF-LEQQNKDLETKISELRQKkgaepsrlyslyereIRELRRQLDTLTVERARLQLELDNLRLAAEDFRQKYEDELN 96
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1143 VIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTEledtldttaaqqelrtkREQEVAELKKAIEEETKNHE 1222
Cdd:pfam00038   97 LRQSAEADIVGLRKDLDEATLARVDLEMKIESLKEELAFLKKN-----------------HEEEVRELQSQVSDTQVNVE 159
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1223 aqIQEIRQRH-ATALEELSEQLE-QAKRFKANLEKN-KQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKV 1299
Cdd:pfam00038  160 --MDAARKLDlTSALAEIRAQYEeIAEKNREEAEEWyQSKLEELQQAAARNGDALRSAKEEITELRRQIQSLEIELQSLK 237
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 45382679   1300 TEGERLRVELAEKANKLQNELDNVSSLLE--EAEKKGIKfakdaASLESQLQDTQELL 1355
Cdd:pfam00038  238 KQKASLERQLAETEERYELQLADYQELISelEAELQQIR-----QEMARQLREYQELL 290
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
1102-1358 5.91e-06

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 380155 [Multi-domain]  Cd Length: 1848  Bit Score: 51.76  E-value: 5.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1102 IAELQAQIEELKIQLAKKEeelQAALARGDEEAVQKNNAlKVIRELQAQIAEL---QEDLES--EKASRNKAEKQKRDLS 1176
Cdd:NF012221 1537 TSESSQQADAVSKHAKQDD---AAQNALADKERAEADRQ-RLEQEKQQQLAAIsgsQSQLEStdQNALETNGQAQRDAIL 1612
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1177 EELEALKTELE------DTLDTTAAQQELRTK--REQEVAELKKAIEEE---TKNH-EAQIQEIRQRHATALEELSEQLE 1244
Cdd:NF012221 1613 EESRAVTKELTtlaqglDALDSQATYAGESGDqwRNPFAGGLLDRVQEQlddAKKIsGKQLADAKQRHVDNQQKVKDAVA 1692
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1245 QAKRFKANLEKNKQGLESDNKelacevkvlqqvKAESEHKRKKLDAQVQELTAKVTEgerlrvelaEKANklqneldnvs 1324
Cdd:NF012221 1693 KSEAGVAQGEQNQANAEQDID------------DAKADAEKRKDDALAKQNEAQQAE---------SDAN---------- 1741
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 45382679  1325 SLLEEAEKKGIKFAKDAASLESQLQ-DTQELLQEE 1358
Cdd:NF012221 1742 AAANDAQSRGEQDASAAENKANQAQaDAKGAKQDE 1776
PRK09039 PRK09039
peptidoglycan -binding protein;
1142-1317 5.98e-06

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 50.73  E-value: 5.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1142 KVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEEL---EALKTELEDTLDTTAAQqelRTKREQEVAELKKAIEEEt 1218
Cdd:PRK09039   53 SALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLsaaEAERSRLQALLAELAGA---GAAAEGRAGELAQELDSE- 128
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1219 knheaqiQEIRQRHATALEELSEQLEQAKRfkanleknkqglesdnkELAcevkVLQQVKAESEHKRKKLDAQVQELtak 1298
Cdd:PRK09039  129 -------KQVSARALAQVELLNQQIAALRR-----------------QLA----ALEAALDASEKRDRESQAKIADL--- 177
                         170
                  ....*....|....*....
gi 45382679  1299 vteGERLRVELAEKANKLQ 1317
Cdd:PRK09039  178 ---GRRLNVALAQRVQELN 193
PRK01156 PRK01156
chromosome segregation protein; Provisional
1097-1730 6.30e-06

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 51.44  E-value: 6.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1097 DLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLS 1176
Cdd:PRK01156  187 YLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLS 266
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1177 EELEA---LKTELEDTLDTTAAQQELRTKREQEVAELKKAIE---EETKNHEAQIQEIRQRH--ATALEELSEQLEQAKR 1248
Cdd:PRK01156  267 MELEKnnyYKELEERHMKIINDPVYKNRNYINDYFKYKNDIEnkkQILSNIDAEINKYHAIIkkLSVLQKDYNDYIKKKS 346
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1249 FKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLdaqvqeltakvtegERLRVELAEKANKLQNELDNVSSLLE 1328
Cdd:PRK01156  347 RYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNI--------------ERMSAFISEILKIQEIDPDAIKKELN 412
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1329 EAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIR------QLEEEKNNlqeqqeeeeEARKNLEKQMLALQA 1402
Cdd:PRK01156  413 EINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpvcgtTLGEEKSN---------HIINHYNEKKSRLEE 483
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1403 QLAEAKKKVDDdlgtiegLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKnrlQQELDDLMVDLdhqrqivSNLEKKQK 1482
Cdd:PRK01156  484 KIREIEIEVKD-------IDEKIVDLKKRKEYLESEEINKSINEYNKIESA---RADLEDIKIKI-------NELKDKHD 546
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1483 KFDQMLAEEKNISARYAEERdraeaeaREKETKALSLARAleealeakeeferqnkqlrADMEDLMSSKDDVGKNVHELE 1562
Cdd:PRK01156  547 KYEEIKNRYKSLKLEDLDSK-------RTSWLNALAVISL-------------------IDIETNRSRSNEIKKQLNDLE 600
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1563 KSKRTLEQQVEEMRT----QLEELEDELQATEDAKLRLEVNMQAMkaqferdlqardeqneEKKRMLVKQVRELEAELED 1638
Cdd:PRK01156  601 SRLQEIEIGFPDDKSyidkSIREIENEANNLNNKYNEIQENKILI----------------EKLRGKIDNYKKQIAEIDS 664
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1639 ERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEaikqLRKLQAQMKDYQRELEEARASRDEIFaqskESEKKLKGLEA 1718
Cdd:PRK01156  665 IIPDLKEITSRINDIEDNLKKSRKALDDAKANRAR----LESTIEILRTRINELSDRINDINETL----ESMKKIKKAIG 736
                         650
                  ....*....|..
gi 45382679  1719 EILQLQEEFAAS 1730
Cdd:PRK01156  737 DLKRLREAFDKS 748
Crescentin pfam19220
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ...
1628-1950 6.54e-06

Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteristic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.


Pssm-ID: 437057 [Multi-domain]  Cd Length: 401  Bit Score: 50.84  E-value: 6.54e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1628 QVRELEAELEDERkqralavAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSK 1707
Cdd:pfam19220   49 RLLELEALLAQER-------AAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAE 121
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1708 ESEKKLKG-------LEAEILQLQEEFAASERARRHAEQERDELADEIAnsasgksALLDEKRRLEARIAQLEEELEEEQ 1780
Cdd:pfam19220  122 ALERQLAAeteqnraLEEENKALREEAQAAEKALQRAEGELATARERLA-------LLEQENRRLQALSEEQAAELAELT 194
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1781 SNMELLNERFRKTTLQVDTLNSELAGERSAAQKSEnarqqlerqnkelkaklqelegsvkskfkatistleakiAQLEEQ 1860
Cdd:pfam19220  195 RRLAELETQLDATRARLRALEGQLAAEQAERERAE---------------------------------------AQLEEA 235
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1861 LEQEAKERA-------AANKLVRRTEKKLKEVFMQVEDERRHADQYKEQMEKANARMKQLKRQLEEAEEEATRANASRRK 1933
Cdd:pfam19220  236 VEAHRAERAslrmkleALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQE 315
                          330
                   ....*....|....*..
gi 45382679   1934 LQRELDDATEANEGLSR 1950
Cdd:pfam19220  316 MQRARAELEERAEMLTK 332
46 PHA02562
endonuclease subunit; Provisional
1447-1712 8.32e-06

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 50.78  E-value: 8.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1447 DKLEKTKNR-LQQELDDLMVDLDH-QRQIVS--------------NLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAR 1510
Cdd:PHA02562  169 DKLNKDKIReLNQQIQTLDMKIDHiQQQIKTynknieeqrkkngeNIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1511 EKETKALSLaraleealeakeeferqnKQLRADMEDLMSSKDDVGKNVHELEKSKR--TLEQQVEEMRTQLEELEDelqa 1588
Cdd:PHA02562  249 DIEDPSAAL------------------NKLNTAAAKIKSKIEQFQKVIKMYEKGGVcpTCTQQISEGPDRITKIKD---- 306
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1589 tedaklrlevNMQAMKAQFERDLQARDEQNE--EKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEmdlkdlegqiea 1666
Cdd:PHA02562  307 ----------KLKELQHSLEKLDTAIDELEEimDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVK------------ 364
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 45382679  1667 ankardeaiKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKK 1712
Cdd:PHA02562  365 ---------AAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
1001-1464 8.69e-06

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 51.21  E-value: 8.69e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1001 QLEKVTAEA-------KIKKMEEEILLLEDQNSKFLKEKKLMEDRIAEC-TSQLAEEEEKAKNLAKLKNKQEMMITDLEE 1072
Cdd:TIGR01612 1154 DLEDVADKAisnddpeEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIeKDKTSLEEVKGINLSYGKNLGKLFLEKIDE 1233
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1073 RLKKEEKTRQELEKAKRKLDG------ETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVI-- 1144
Cdd:TIGR01612 1234 EKKKSEHMIKAMEAYIEDLDEikekspEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIed 1313
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1145 -----------RELQAQIAELQED--------------------------LESEKASRNKAEKQKRDLSEE--------- 1178
Cdd:TIGR01612 1314 fseesdindikKELQKNLLDAQKHnsdinlylneianiynilklnkikkiIDEVKEYTKEIEENNKNIKDEldkseklik 1393
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1179 -------LEALKTELEDTLD----------TTAAQQELRTKREQEVAELKKAIE------------EETKNHEAQIQEIR 1229
Cdd:TIGR01612 1394 kikddinLEECKSKIESTLDdkdidecikkIKELKNHILSEESNIDTYFKNADEnnenvlllfkniEMADNKSQHILKIK 1473
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1230 QRHATA-----LEELSEQLEQAKRFKANLEKNKQGLESD---------------NKELACEVK-VLQQVKAESE------ 1282
Cdd:TIGR01612 1474 KDNATNdhdfnINELKEHIDKSKGCKDEADKNAKAIEKNkelfeqykkdvtellNKYSALAIKnKFAKTKKDSEiiikei 1553
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1283 ---HKRKKLDAQVQELTAKVTEGERLRVE-LAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELlqEE 1358
Cdd:TIGR01612 1554 kdaHKKFILEAEKSEQKIKEIKKEKFRIEdDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETESI--EK 1631
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1359 TRQKLNLSSRIRQLEEEKNN---LQEQQEEEEEARKNLEKQmlalqaqlaeaKKKVDDDLGTIEGLEENKKKLLKDME-S 1434
Cdd:TIGR01612 1632 KISSFSIDSQDTELKENGDNlnsLQEFLESLKDQKKNIEDK-----------KKELDELDSEIEKIEIDVDQHKKNYEiG 1700
                          570       580       590
                   ....*....|....*....|....*....|.
gi 45382679   1435 LSQRLEEKAMA-YDKLEKTKNRLQQELDDLM 1464
Cdd:TIGR01612 1701 IIEKIKEIAIAnKEEIESIKELIEPTIENLI 1731
PTZ00121 PTZ00121
MAEBL; Provisional
1579-1958 9.11e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 51.30  E-value: 9.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1579 LEELEdELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEkkRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLK 1658
Cdd:PTZ00121 1029 IEELT-EYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQD--EGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKK 1105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1659 DLEGQIEAANKARdEAIKQLRKLqaqmkdyqRELEEARasRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAE 1738
Cdd:PTZ00121 1106 TETGKAEEARKAE-EAKKKAEDA--------RKAEEAR--KAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAED 1174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1739 QERDELA---DEIANSASGKSAllDEKRRLEAriAQLEEELEEEQSNMELLNERFRKTTLQVDtlnselagerSAAQKSE 1815
Cdd:PTZ00121 1175 AKKAEAArkaEEVRKAEELRKA--EDARKAEA--ARKAEEERKAEEARKAEDAKKAEAVKKAE----------EAKKDAE 1240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1816 NARQQLERQNKELKAKLQELEGSVKSKFKATISTLEAKIAqleEQLeQEAKERAAANKLVRRTEKKLKEVFMQVEDERRH 1895
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA---DEL-KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK 1316
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679  1896 ADQYKEQMEKANARMKQLKRQLEEAEEEATRANASRRKLQRELDDATEANEGLSREVSTLKNR 1958
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
PRK04778 PRK04778
septation ring formation regulator EzrA; Provisional
1006-1331 9.81e-06

septation ring formation regulator EzrA; Provisional


Pssm-ID: 179877 [Multi-domain]  Cd Length: 569  Bit Score: 50.60  E-value: 9.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1006 TAEAKIKKMEEEILLL---EDQNSKFLKE---------KKLMEDR------IAECTSQLAEEEEKAKNLAKLKN-----K 1062
Cdd:PRK04778  116 LIEEDIEQILEELQELlesEEKNREEVEQlkdlyrelrKSLLANRfsfgpaLDELEKQLENLEEEFSQFVELTEsgdyvE 195
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1063 QEMMITDLEERLKKEEKTRQELEKAKRKLDgetTDLQDQIAELQAQIEELKIQ---------------LAKKEEELQAAL 1127
Cdd:PRK04778  196 AREILDQLEEELAALEQIMEEIPELLKELQ---TELPDQLQELKAGYRELVEEgyhldhldiekeiqdLKEQIDENLALL 272
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1128 ARGDEEAVQKNNalkviRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEV 1207
Cdd:PRK04778  273 EELDLDEAEEKN-----EEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESEL 347
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1208 aELKKAIEEETKNHEAQIQEIRQRHATA----------LEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQV 1277
Cdd:PRK04778  348 -ESVRQLEKQLESLEKQYDEITERIAEQeiayselqeeLEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNK 426
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1278 KAESEHKRKKL------DAQVQELTAKVTEGERLRVELaekaNKLQNELDNVSSLLEEAE 1331
Cdd:PRK04778  427 LHEIKRYLEKSnlpglpEDYLEMFFEVSDEIEALAEEL----EEKPINMEAVNRLLEEAT 482
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
688-712 1.25e-05

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 47.34  E-value: 1.25e-05
                         10        20
                 ....*....|....*....|....*
gi 45382679  688 YKESLTKLMATLRNTNPNFVRCIIP 712
Cdd:cd01363  146 INESLNTLMNVLRATRPHFVRCISP 170
PRK12704 PRK12704
phosphodiesterase; Provisional
1002-1170 1.33e-05

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 50.16  E-value: 1.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1002 LEKVTAEAKIKKMEEEIllledqnSKFLKE-KKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQ-EMMITDLEERLKKEEK 1079
Cdd:PRK12704   24 VRKKIAEAKIKEAEEEA-------KRILEEaKKEAEAIKKEALLEAKEEIHKLRNEFEKELRErRNELQKLEKRLLQKEE 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1080 T----RQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAvqKNNAL-KVIRELQAQIAEL 1154
Cdd:PRK12704   97 NldrkLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA--KEILLeKVEEEARHEAAVL 174
                         170
                  ....*....|....*.
gi 45382679  1155 QEDLESEkaSRNKAEK 1170
Cdd:PRK12704  175 IKEIEEE--AKEEADK 188
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
876-1183 1.36e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 50.45  E-value: 1.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   876 LQVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERkhqqLLEEKNILAEQLQAETELFAEAEEmraRLAAKKQELEEil 955
Cdd:PRK03918  459 AELKRIEKELKEIEEKERKLRKELRELEKVLKKESE----LIKLKELAEQLKELEEKLKKYNLE---ELEKKAEEYEK-- 529
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   956 hdLESRVEEEEERNQILQNEKKKMQGhiqdleeqldeeegarqkLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKklm 1035
Cdd:PRK03918  530 --LKEKLIKLKGEIKSLKKELEKLEE------------------LKKKLAELEKKLDELEEELAELLKELEELGFES--- 586
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1036 edrIAECTSQLAEEEEKAKNLAKLKNKQEmmitDLEERLKKEEKTRQELEKAKRKLDGETTDLQdqiaELQAQIEELKIQ 1115
Cdd:PRK03918  587 ---VEELEERLKELEPFYNEYLELKDAEK----ELEREEKELKKLEEELDKAFEELAETEKRLE----ELRKELEELEKK 655
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679  1116 LAKKE-EELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALK 1183
Cdd:PRK03918  656 YSEEEyEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1264-1510 1.38e-05

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 50.02  E-value: 1.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1264 NKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELaekaNKLQNELDNVSSLLEEAEKKGIKFAKDAAS 1343
Cdd:COG4372   66 NRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSEL----QKARQEREAVRQELAAARQNLAKAQQELAR 141
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1344 LESQLQDTQELLQeetrqklNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKvDDDLGTIEGLEE 1423
Cdd:COG4372  142 LTKQAQDLQTRLK-------TLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQE-AQNLATRANAAQ 213
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1424 NKKKLLKDMESLSQRLEEKAMAYDKLEKTKNrlqQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEERD 1503
Cdd:COG4372  214 ARTEELARRAAAAQQTAQAIQQRDAQISQKA---QQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQ 290

                 ....*..
gi 45382679 1504 RAEAEAR 1510
Cdd:COG4372  291 QAAATQR 297
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
1071-1457 1.48e-05

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 50.21  E-value: 1.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1071 EERLKKEEKTRQELEKAKRKLDGETTDLQD-------QIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKV 1143
Cdd:pfam10174  358 ESFLNKKTKQLQDLTEEKSTLAGEIRDLKDmldvkerKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTA 437
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1144 IRELQAQIAELQEDLESEKASRNKAEKQKRdlsEELEALKTELEDTLDTTAAQQELRTKREQEVAELKkaieeETKNHEA 1223
Cdd:pfam10174  438 LTTLEEALSEKERIIERLKEQREREDRERL---EELESLKKENKDLKEKVSALQPELTEKESSLIDLK-----EHASSLA 509
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1224 QIQEIRQRHATALE-ELSEQLEQAKRFKANLEKNKQGLESD--NKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVT 1300
Cdd:pfam10174  510 SSGLKKDSKLKSLEiAVEQKKEECSKLENQLKKAHNAEEAVrtNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILR 589
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1301 EGERLRVELAEKANKLQN-----------ELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQ--------EETRQ 1361
Cdd:pfam10174  590 EVENEKNDKDKKIAELESltlrqmkeqnkKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQleelmgalEKTRQ 669
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1362 KLN-----LSSRIRQLEEEKNNLQEQQEEEeeaRKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLs 1436
Cdd:pfam10174  670 ELDatkarLSSTQQSLAEKDGHLTNLRAER---RKQLEEILEMKQEALLAAISEKDANIALLELSSSKKKKTQEEVMAL- 745
                          410       420
                   ....*....|....*....|.
gi 45382679   1437 qRLEEKAMAYDKLEKTKNRLQ 1457
Cdd:pfam10174  746 -KREKDRLVHQLKQQTQNRMK 765
PRK01156 PRK01156
chromosome segregation protein; Provisional
932-1490 1.54e-05

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 50.29  E-value: 1.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   932 ELFAEAEEMRaRLAAKKQELEEILHDLESRVEEEEErnqiLQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKI 1011
Cdd:PRK01156  153 KILDEILEIN-SLERNYDKLKDVIDMLRAEISNIDY----LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEY 227
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1012 K-KMEEEILLLEDQN--SKFLKEKKLMEDRIAECTSQLAEEEEKAKNlaklknkqemmITDLEERLKKEEKTRQeleKAK 1088
Cdd:PRK01156  228 NnAMDDYNNLKSALNelSSLEDMKNRYESEIKTAESDLSMELEKNNY-----------YKELEERHMKIINDPV---YKN 293
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1089 RKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQ--AALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRN 1166
Cdd:PRK01156  294 RNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKklSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIE 373
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1167 KAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRhataLEELSEQL--- 1243
Cdd:PRK01156  374 SLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALREN----LDELSRNMeml 449
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1244 ---------------EQAKRFKANLEKNKQGLESDNKELACEVKVL-----QQVKAESEHKRKKL------DAQVQELTA 1297
Cdd:PRK01156  450 ngqsvcpvcgttlgeEKSNHIINHYNEKKSRLEEKIREIEIEVKDIdekivDLKKRKEYLESEEInksineYNKIESARA 529
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1298 KVTEGERLRVELAEKANKLQNELDNVSSL-LEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLN-LSSRIRQLEEE 1375
Cdd:PRK01156  530 DLEDIKIKINELKDKHDKYEEIKNRYKSLkLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNdLESRLQEIEIG 609
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1376 KNNLQEQQEEEEEARKNlEKQMLALQAQLAEAKKKVDDdlgTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNR 1455
Cdd:PRK01156  610 FPDDKSYIDKSIREIEN-EANNLNNKYNEIQENKILIE---KLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKK 685
                         570       580       590
                  ....*....|....*....|....*....|....*
gi 45382679  1456 LQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAE 1490
Cdd:PRK01156  686 SRKALDDAKANRARLESTIEILRTRINELSDRIND 720
Crescentin pfam19220
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ...
1295-1649 1.55e-05

Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteristic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.


Pssm-ID: 437057 [Multi-domain]  Cd Length: 401  Bit Score: 49.68  E-value: 1.55e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1295 LTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEA---EKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQ 1371
Cdd:pfam19220   36 IEAILRELPQAKSRLLELEALLAQERAAYGKLRRELaglTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRD 115
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1372 LEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEK 1451
Cdd:pfam19220  116 KTAQAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAELAELTR 195
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1452 TKNRLQQELDDlmvdldhQRQIVSNLEKKqkkFDQMLAEEKNISARYAEERDRAEAEAReketkalSLARALEEALEAKE 1531
Cdd:pfam19220  196 RLAELETQLDA-------TRARLRALEGQ---LAAEQAERERAEAQLEEAVEAHRAERA-------SLRMKLEALTARAA 258
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1532 EFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLE--VNM-----QAMK 1604
Cdd:pfam19220  259 ATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRARAELEerAEMltkalAAKD 338
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 45382679   1605 AQFER------DLQARDEQ----NEEKKRMLVKQVRELEAELEDERKQRALAVAA 1649
Cdd:pfam19220  339 AALERaeeriaSLSDRIAEltkrFEVERAALEQANRRLKEELQRERAERALAQGA 393
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1006-1241 1.57e-05

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 49.64  E-value: 1.57e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1006 TAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECtsqlaeEEEKAKNLAKLKNKQEMMiTDLEERLKKEEKTRQELE 1085
Cdd:COG4372   92 TAQGEKRAAETEREAARSELQKARQEREAVRQELAAA------RQNLAKAQQELARLTKQA-QDLQTRLKTLAEQRRQLE 164
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1086 KAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEE--------------------LQAALARGDEEAVQKNnalKVIR 1145
Cdd:COG4372  165 AQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEaqnlatranaaqarteelarRAAAAQQTAQAIQQRD---AQIS 241
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1146 ELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTtaAQQELRTKREQEVAELKKAIEEETKNHEAQI 1225
Cdd:COG4372  242 QKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRL--RQQAAATQRGQVLAGAAQRVAQAQAQAQAQA 319
                        250
                 ....*....|....*.
gi 45382679 1226 QEIRQRHATALEELSE 1241
Cdd:COG4372  320 QLLSSANRPAALRLRR 335
HlyD pfam00529
HlyD membrane-fusion protein of T1SS; HlyD is a component of the prototypical alpha-haemolysin ...
1084-1240 2.18e-05

HlyD membrane-fusion protein of T1SS; HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD and HlyB are inner-membrane proteins and specific components of the transport apparatus of alpha-haemolysin. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.


Pssm-ID: 425733 [Multi-domain]  Cd Length: 322  Bit Score: 48.57  E-value: 2.18e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1084 LEKAKRKLDGETTDLQDQIAELQAQIEelkiQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKA 1163
Cdd:pfam00529   56 YQAALDSAEAQLAKAQAQVARLQAELD----RLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRV 131
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 45382679   1164 SRNKAEKQKRDLsEELEALKTELEDTLDTTAAQQE-LRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELS 1240
Cdd:pfam00529  132 LAPIGGISRESL-VTAGALVAQAQANLLATVAQLDqIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLE 208
Gp58 pfam07902
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage ...
1170-1408 2.24e-05

gp58-like protein; Sequences found in this family are derived from a number of bacteriophage and prophage proteins. They are similar to gp58, a minor structural protein of Lactococcus delbrueckii bacteriophage LL-H.


Pssm-ID: 369586 [Multi-domain]  Cd Length: 594  Bit Score: 49.57  E-value: 2.24e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1170 KQKRDLSEELEALKTELEDT----------LDTTAAQQEL-RTKREQEVAE----LKKAIEEETKNHEAQIQE----IRQ 1230
Cdd:pfam07902   78 KSLEEMLSQLKELNLELTDTknsnlwskikLNNNGMLREYhNDTIKTEIVEsaegIATRISEDTDKKLALINEtisgIRR 157
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1231 RHATALEELSEqleqakRFKANLEKNKQGLESDNKELACEVKV-LQQVKAESEHKRKKLDAQVQELTAKVTEG------- 1302
Cdd:pfam07902  158 EYQDADRQLSS------SYQAGIEGLKATMASDKIGLQAEIQAsAQGLSQRYDNEIRKLSAKITTTSSGTTEAyeskldd 231
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1303 ---------ERLRVELAEKANKL----QNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQEL----------LQEET 1359
Cdd:pfam07902  232 lraeftrsnQGMRTELESKISGLqstqQSTAYQISQEISNREGAVSRVQQDLDSYQRRLQDAEKNyssltqtvkgLQSTV 311
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|
gi 45382679   1360 R-QKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAK 1408
Cdd:pfam07902  312 SdPNSKLESRITQLAGLIEQKVTRGDVESIIRQSGDSIMLAIKAKLPQSK 361
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
1081-1243 2.25e-05

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 47.75  E-value: 2.25e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1081 RQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKvirelQAQIAELQEDLES 1160
Cdd:COG1579   26 IKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD-----ERELRALNIEIQI 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1161 EKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQqelrtkrEQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELS 1240
Cdd:COG1579  101 AKERINSLEDELAELMEEIEKLEKEIEDLKERLERL-------EKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173

                 ...
gi 45382679 1241 EQL 1243
Cdd:COG1579  174 PEL 176
HCR pfam07111
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ...
1265-1915 2.59e-05

Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.


Pssm-ID: 284517 [Multi-domain]  Cd Length: 749  Bit Score: 49.36  E-value: 2.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1265 KELACEVKVLQQVkaeSEHKRKKLDAQVQELTAkvtegerlrVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKdaasl 1344
Cdd:pfam07111   76 RRLEEEVRLLRET---SLQQKMRLEAQAMELDA---------LAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGS----- 138
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1345 ESQLQDTQELLQEEtrqklnLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEEN 1424
Cdd:pfam07111  139 QRELEEIQRLHQEQ------LSSLTQAHEEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEE 212
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1425 KKKLLKDMESLSQRLEEKAMA---YDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARYAEE 1501
Cdd:pfam07111  213 LEAQVTLVESLRKYVGEQVPPevhSQTWELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQP 292
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1502 RDRAEAEAREKETKALSLARALEEALEAkeeferqnkQLRADMEDLMSSKDDVGKNVHELEK--SKRTLEQQVEEMRTQL 1579
Cdd:pfam07111  293 SDSLEPEFPKKCRSLLNRWREKVFALMV---------QLKAQDLEHRDSVKQLRGQVAELQEqvTSQSQEQAILQRALQD 363
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1580 EELEDELQATEDAKLRLEVNmQAMKAQfeRDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKD 1659
Cdd:pfam07111  364 KAAEVEVERMSAKGLQMELS-RAQEAR--RRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSY 440
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1660 LEGQIEAANK--ARDEAIKQLRKLQAQM--------KDYQRELEEARASRDEIFAQSKesekklkgLEAEILQLQeefaa 1729
Cdd:pfam07111  441 AVRKVHTIKGlmARKVALAQLRQESCPPpppappvdADLSLELEQLREERNRLDAELQ--------LSAHLIQQE----- 507
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1730 SERARRHAEQERdeladeiansasgksalldekRRLEARIAQLEEELEEEQSNMELLNERfrkttlqvdtLNSELAGERS 1809
Cdd:pfam07111  508 VGRAREQGEAER---------------------QQLSEVAQQLEQELQRAQESLASVGQQ----------LEVARQGQQE 556
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1810 AAQKSENARQQLERQNKELKAKLQELEGSVKSKFKATISTLEAKiaqLEEQLEQEAKERAAANKLVRRT--EKKLKEVFM 1887
Cdd:pfam07111  557 STEEAASLRQELTQQQEIYGQALQEKVAEVETRLREQLSDTKRR---LNEARREQAKAVVSLRQIQHRAtqEKERNQELR 633
                          650       660
                   ....*....|....*....|....*...
gi 45382679   1888 QVEDERRhadqyKEQMEKANARMKQLKR 1915
Cdd:pfam07111  634 RLQDEAR-----KEEGQRLARRVQELER 656
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1140-1410 2.60e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 48.95  E-value: 2.60e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1140 ALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEEtk 1219
Cdd:COG4942   29 AAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL-- 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1220 nheaQIQEIRQRhatalEELSEQLEQAKRFKAN-----LEKNKQGLESDN--KELACEVKVLQQVKAESEHKRKKLDAQV 1292
Cdd:COG4942  107 ----EVQEREQR-----RRLAEQLAALQRSGRNpppalLVSPEDAQRSVRlaIYYGALNPARAERIDALKATLKQLAAVR 177
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1293 QELTAKVTEGERLRVELAEKANKLQNELdnvsslleeAEKKGIKfakdaASLESQLQDTQELLQEETRQKLNLSSRIRQL 1372
Cdd:COG4942  178 AEIAAEQAELTTLLSEQRAQQAKLAQLL---------EERKKTL-----AQLNSELSADQKKLEELRANESRLKNEIASA 243
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 45382679 1373 EEEknnlqeqqeEEEEARKNLEKQMLALQAQLAEAKKK 1410
Cdd:COG4942  244 EAA---------AAKAREAAAAAEAAAARARAAEAKRT 272
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
998-1161 2.75e-05

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 47.75  E-value: 2.75e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  998 QKLQLEKVTAEAKIK-------KMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKaknLAKLKNKQeMMITDL 1070
Cdd:COG1579   13 QKLDLEKDRLEPRIKeirkalkKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRER---IKRAEEKL-SAVKDE 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1071 EErLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNnalKVIRELQAQ 1150
Cdd:COG1579   89 RE-LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIR---EEGQELSSK 164
                        170
                 ....*....|.
gi 45382679 1151 IAELQEDLESE 1161
Cdd:COG1579  165 REELKEKLDPE 175
PRK09039 PRK09039
peptidoglycan -binding protein;
1084-1245 2.90e-05

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 48.42  E-value: 2.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1084 LEKAKrkldgeTTDLQDQIAELQAQieelkiqLAKKEEE---LQAALARGDEEAvqknnalkviRELQAQIAELQEDLES 1160
Cdd:PRK09039   71 LERQG------NQDLQDSVANLRAS-------LSAAEAErsrLQALLAELAGAG----------AAAEGRAGELAQELDS 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1161 EKASRNKAEKQKRDLSEELEALKTELedtldttaaqqelrtkreQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELS 1240
Cdd:PRK09039  128 EKQVSARALAQVELLNQQIAALRRQL------------------AALEAALDASEKRDRESQAKIADLGRRLNVALAQRV 189

                  ....*
gi 45382679  1241 EQLEQ 1245
Cdd:PRK09039  190 QELNR 194
NtpI COG1269
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];
1065-1334 3.25e-05

Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];


Pssm-ID: 224188 [Multi-domain]  Cd Length: 660  Bit Score: 48.90  E-value: 3.25e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1065 MMITDLEERLK--KEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKI---QLAKKEEELQAALARGDEEAVQKNN 1139
Cdd:COG1269   31 VHLEDLEEGEKglKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFIlpeEVEKLEAELKSLEEVIKPAEKFSSE 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1140 ALKVIRELQAQIAELQEDLESEKASRNKAEKQKrDLSEELEALKTELEDTLDttaAQQELRTKREQEVAELKKAIEEETK 1219
Cdd:COG1269  111 VEELTRKLEERLSELDEELEDLEDLLEELEPLA-YLDFDLSLLRGLKFLLVR---LGLVRREKLEALVGVIEDEVALYGE 186
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1220 NHEAQIQEIRQRHATALEELSEQLeqakrfkanlekNKQGLEsdnkelacevkvLQQVKAESEHKRKKLDAQVQELTAKV 1299
Cdd:COG1269  187 NVEASVVIVVAHGAEDLDKVSKIL------------NELGFE------------LYEVPEFDGGPSELISELEEVIAEIQ 242
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 45382679 1300 TEGERLRVELAEKANKLQNELDNVSSLLEEAEKKG 1334
Cdd:COG1269  243 DELESLRSELEALAEKIAEELLAVREILEIEKALG 277
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
1423-1959 3.28e-05

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 49.20  E-value: 3.28e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1423 ENKKKLLKDMESLSQRLEEKAMAYD-------KLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNIS 1495
Cdd:TIGR00618  163 KEKKELLMNLFPLDQYTQLALMEFAkkkslhgKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSH 242
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1496 ARYAEERDRAEAEAReketkalslaraleealeakeeFERQNKQLRADMEDLMSSKddvgkNVHELEKSKRTLEQQVEEM 1575
Cdd:TIGR00618  243 AYLTQKREAQEEQLK----------------------KQQLLKQLRARIEELRAQE-----AVLEETQERINRARKAAPL 295
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1576 RTQLEELEDELQATEDAKLRLEVNMQAM-KAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKK-- 1652
Cdd:TIGR00618  296 AAHIKAVTQIEQQAQRIHTELQSKMRSRaKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQqh 375
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1653 -MEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASE 1731
Cdd:TIGR00618  376 tLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEK 455
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1732 RARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAqleeELEEEQSNMELLNERFRKTTLQVdTLNSELAGERSAA 1811
Cdd:TIGR00618  456 LEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLA----RLLELQEEPCPLCGSCIHPNPAR-QDIDNPGPLTRRM 530
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1812 QKSENARQQLERQNKELKAKLQELEGSVKSkFKATIsTLEAKIAQLEEQLEQEAKEraAANKLVRRTEKKLKEVFMQVED 1891
Cdd:TIGR00618  531 QRGEQTYAQLETSEEDVYHQLTSERKQRAS-LKEQM-QEIQQSFSILTQCDNRSKE--DIPNLQNITVRLQDLTEKLSEA 606
                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 45382679   1892 ERRHADQYKEQMEKANARMKQLKRQLEEAEEEATRANASRRKLQRELDDATEANEGLSREVSTLKNRL 1959
Cdd:TIGR00618  607 EDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKEL 674
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
1274-1402 3.82e-05

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 48.67  E-value: 3.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1274 LQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAAslESQLQDTQE 1353
Cdd:PRK00409  518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEA--DEIIKELRQ 595
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 45382679  1354 LLQEETRqklnlSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQA 1402
Cdd:PRK00409  596 LQKGGYA-----SVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
1085-1341 3.85e-05

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 48.67  E-value: 3.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1085 EKAKRKLDGETTDLQDQIAELqaqiEELKIQLAKKEEELQAALArgdeeavqknnalkvirelqaQIAELQEDLEsekas 1164
Cdd:PRK00409  505 EEAKKLIGEDKEKLNELIASL----EELERELEQKAEEAEALLK---------------------EAEKLKEELE----- 554
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1165 rnkaeKQKRDLSEELEALKTELEDtldttaaqqelrtKREQEVAELKKAIEEETKN-HEAQIQEIRQRHATALEELSEQL 1243
Cdd:PRK00409  555 -----EKKEKLQEEEDKLLEEAEK-------------EAQQAIKEAKKEADEIIKElRQLQKGGYASVKAHELIEARKRL 616
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1244 EQAKRfKANLEKNKQGLESDNKELACEVKVLQ-QVKAESEHKRKKLDAQVQE----LTAKVTEGERLRVELAEKANKLQN 1318
Cdd:PRK00409  617 NKANE-KKEKKKKKQKEKQEELKVGDEVKYLSlGQKGEVLSIPDDKEAIVQAgimkMKVPLSDLEKIQKPKKKKKKKPKT 695
                         250       260       270
                  ....*....|....*....|....*....|...
gi 45382679  1319 ELDNVSSL----------LEEAEKKGIKFAKDA 1341
Cdd:PRK00409  696 VKPKPRTVsleldlrgmrYEEALERLDKYLDDA 728
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
995-1413 3.90e-05

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 48.81  E-value: 3.90e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    995 GARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKaknlaKLKNKQEMMITDLEERL 1074
Cdd:pfam02463  647 GLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKK-----EQREKEELKKLKLEAEE 721
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1075 KKEEKTRQELEKAKRKLDgettDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKviRELQAQIAEL 1154
Cdd:pfam02463  722 LLADRVQEAQDKINEELK----LLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEK--LKVEEEKEEK 795
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1155 QEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEvaELKKAIEEETKNHEAQIQEIRQRHAT 1234
Cdd:pfam02463  796 LKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQK--LEKLAEEELERLEEEITKEELLQELL 873
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1235 ALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKAN 1314
Cdd:pfam02463  874 LKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEEN 953
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1315 KLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLE 1394
Cdd:pfam02463  954 NKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGW 1033
                          410
                   ....*....|....*....
gi 45382679   1395 KQMLALQAQLAEAKKKVDD 1413
Cdd:pfam02463 1034 NKVFFYLELGGSAELRLED 1052
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
1155-1509 4.72e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 48.58  E-value: 4.72e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1155 QEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKkaiEEETKNheaQIQEIRQrhat 1234
Cdd:pfam17380  298 QERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIR---QEERKR---ELERIRQ---- 367
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1235 alEELSEQLEQAKRfkanLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELtakvtegERLRVElAEKAN 1314
Cdd:pfam17380  368 --EEIAMEISRMRE----LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEM-------EQIRAE-QEEAR 433
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1315 KLQneldnVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNL--SSRIRQLEEEKNnlqeqqeeeeeaRKN 1392
Cdd:pfam17380  434 QRE-----VRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELekEKRDRKRAEEQR------------RKI 496
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1393 LEKQMLALQAQLAEakkkvdddlgtieglEENKKKLL-KDMESlsqrlEEKAMAydklEKTKNRLQQELDDLMVDLDHQR 1471
Cdd:pfam17380  497 LEKELEERKQAMIE---------------EERKRKLLeKEMEE-----RQKAIY----EEERRREAEEERRKQQEMEERR 552
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|.
gi 45382679   1472 QIVSNLEK---KQKKFDQMLAEEKNISARYAEERDRAEAEA 1509
Cdd:pfam17380  553 RIQEQMRKateERSRLEAMEREREMMRQIVESEKARAEYEA 593
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
970-1178 4.72e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 48.18  E-value: 4.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  970 QILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEE 1049
Cdd:COG4942   34 AADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQ 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1050 EEK-AKNLA-----------KLKNKQE-------------MMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAE 1104
Cdd:COG4942  114 RRRlAEQLAalqrsgrnpppALLVSPEdaqrsvrlaiyygALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSE 193
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1105 LQAQIEELKIQLA---KKEEELQAALARGD----EEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSE 1177
Cdd:COG4942  194 QRAQQAKLAQLLEerkKTLAQLNSELSADQkkleELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTG 273

                 .
gi 45382679 1178 E 1178
Cdd:COG4942  274 E 274
GumC COG3206
Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane ...
1067-1358 5.48e-05

Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225747 [Multi-domain]  Cd Length: 458  Bit Score: 47.82  E-value: 5.48e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1067 ITDLEERLKKEEKTRQE-LEKAKRKLDGEttdLQDQIAELQAQiEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIr 1145
Cdd:COG3206  140 LDDLLESLKVLRAGRSRvIELSYTSNDPK---LAAKLANALAQ-AYLADQLEAQLEAFRRASDSLDERLEELRARLQEA- 214
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1146 ELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTEledtldTTAAQQELRTKREQEVAELKKAIEEETKNHEAqI 1225
Cdd:COG3206  215 EAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARAR------LAQAEARLASLLQLLPLGREAAALREVLESPT-I 287
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1226 QEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEvkvLQQVKAESEHKRKKLDAQVQELTAKVtegERL 1305
Cdd:COG3206  288 QDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAE---LRQILASLPNELALLEQQEAALEKEL---AQL 361
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 45382679 1306 RVELAeKANKLQNELDNVSSLLEEAEkkgikfakdaASLESQLQDTQELLQEE 1358
Cdd:COG3206  362 KGRLS-KLPKLQVQLRELEREAEAAR----------SLYETLLQRYQELSIQE 403
AAA_13 pfam13166
AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA ...
1030-1413 5.68e-05

AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.


Pssm-ID: 433006 [Multi-domain]  Cd Length: 712  Bit Score: 48.13  E-value: 5.68e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1030 KEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKE------EKTRQELEKAKRKLDGETTDLQDQIA 1103
Cdd:pfam13166   89 EESIEIQAKIAKLKKEIDDHEEKLEALTANLQKADKEKEKLEADFLDEcwkkikRKKDSALSEALNGFRYEANFKSRLLR 168
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1104 ELQAQIEELKIQLAkkEEELQAALARGDEEAVQKnnaLKVIRELQAQI--AELQEDLESEKASRNK--AEKQKR-DLSEE 1178
Cdd:pfam13166  169 EIEKDNFNAGVLLT--DEDLKAALETVFGDNKPE---IAPLSFDVIDFdaLEKAEILKQKVIGKSSaiAELIKNpDLADW 243
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1179 LEALKTELEDTLDTTA-AQQELRTKReqeVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLeqakrfkanleknK 1257
Cdd:pfam13166  244 VEEGLELHKAHLDTCPfCGQPLPAER---KAALEAHFDDEFTEFQRRLQKLIEKYESAISSLLAQL-------------P 307
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1258 QGLESDNKELACEVKVlQQVKAESEHKRKKLDAQVQELTAKVTEGERlRVELAEKANKLQNELDNVSSLLEEAEK---KG 1334
Cdd:pfam13166  308 AVSDLASLLSAFELDV-EDLKAEAEVLNSQLDGLRQALEAKRKEPFK-SIELDSVDAKIESIKDLVAAINELIAKhneIT 385
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679   1335 IKFAKDAASLESQLQdtQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDD 1413
Cdd:pfam13166  386 DNLEEEKNKAKKKLW--LFLVEEFKAEIDEYKDAYAGLEKAINSLTKEIKNATAEIKKLRAEIRELEKQLRDHKPGADE 462
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
1663-1943 5.69e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 48.20  E-value: 5.69e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1663 QIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASR----DEIFAQSKESEKKLKGLEAEILQLQEEfaasERARRHAE 1738
Cdd:pfam17380  289 QQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARqaemDRQAAIYAEQERMAMERERELERIRQE----ERKRELER 364
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1739 QERDELADEIANSASGKSALLDEKRRLEaRIAQLEEELEEEQSNMEllnERFRKTTLQVDTLnSELAGERSAAQKSENAR 1818
Cdd:pfam17380  365 IRQEEIAMEISRMRELERLQMERQQKNE-RVRQELEAARKVKILEE---ERQRKIQQQKVEM-EQIRAEQEEARQREVRR 439
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1819 QQLERQNKELKAKLQELEgsvKSKFKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRT-EKKLKEVFMQ-VEDERRHA 1896
Cdd:pfam17380  440 LEEERAREMERVRLEEQE---RQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKIlEKELEERKQAmIEEERKRK 516
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 45382679   1897 DQYKEQMEKANARMKQLKRQLEEAEEEATRANASRRKLQRELDDATE 1943
Cdd:pfam17380  517 LLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATE 563
PRK09039 PRK09039
peptidoglycan -binding protein;
1017-1167 5.83e-05

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 47.27  E-value: 5.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1017 EILLLEDQNSKFLkekklmEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLkkeektrQELEKAKRKLDGETT 1096
Cdd:PRK09039   67 DLLSLERQGNQDL------QDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRA-------GELAQELDSEKQVSA 133
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45382679  1097 DLQDQIAELQAQIEELKIQLAKKEEELQAALARGdeeavqknnalkviRELQAQIAELQEDLESEKASRNK 1167
Cdd:PRK09039  134 RALAQVELLNQQIAALRRQLAALEAALDASEKRD--------------RESQAKIADLGRRLNVALAQRVQ 190
mukB PRK04863
chromosome partition protein MukB;
874-1247 5.89e-05

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 48.41  E-value: 5.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   874 PLLQVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNI-LAEQLQAETElfaeaEEMRArLAAKKQELE 952
Cdd:PRK04863  777 PLFGRAAREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGShLAVAFEADPE-----AELRQ-LNRRRVELE 850
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   953 EILHDLESrvEEEEERNQILQnekkkmqghiqdleeqldeeegARQKLQLekvtaeakIKKMEEEILLLEDQNskflkek 1032
Cdd:PRK04863  851 RALADHES--QEQQQRSQLEQ----------------------AKEGLSA--------LNRLLPRLNLLADET------- 891
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1033 klMEDRIAECTSQLAEEEEKA-------KNLAKLKNKQEMMITDLE--ERLKKE-EKTRQELEKAKRKLDGETTDLQ--- 1099
Cdd:PRK04863  892 --LADRVEEIREQLDEAEEAKrfvqqhgNALAQLEPIVSVLQSDPEqfEQLKQDyQQAQQTQRDAKQQAFALTEVVQrra 969
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1100 ----DQIAELQAQIEELKIQLAKKEEELQAALARGDEEAvqknnalkviRELQAQIAELQEDLESEKASRNKAEKQKRDL 1175
Cdd:PRK04863  970 hfsyEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQL----------RQAQAQLAQYNQVLASLKSSYDAKRQMLQEL 1039
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1176 SEELEALKTELEDTLDTTAA------QQELRTKREQEvAELKKAIEEETKNHEAQiqeirQRHATALEE----LSEQLEQ 1245
Cdd:PRK04863 1040 KQELQDLGVPADSGAEERARarrdelHARLSANRSRR-NQLEKQLTFCEAEMDNL-----TKKLRKLERdyheMREQVVN 1113

                  ..
gi 45382679  1246 AK 1247
Cdd:PRK04863 1114 AK 1115
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
876-1123 5.98e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 48.20  E-value: 5.98e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    876 LQVTRQEEelqaKDEELMKVKEKQTKVEAE-LEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEI 954
Cdd:pfam17380  350 LERIRQEE----RKRELERIRQEEIAMEISrMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQI 425
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    955 LHDLESrveEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLkEKKL 1034
Cdd:pfam17380  426 RAEQEE---ARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKIL-EKEL 501
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1035 MEDRIAectsqLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKldgettDLQDQIaeLQAQIEELKI 1114
Cdd:pfam17380  502 EERKQA-----MIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERR------RIQEQM--RKATEERSRL 568

                   ....*....
gi 45382679   1115 QLAKKEEEL 1123
Cdd:pfam17380  569 EAMEREREM 577
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
877-1231 6.53e-05

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 47.80  E-value: 6.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    877 QVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETEL---FAEAEEMRARLAAKKQELEE 953
Cdd:pfam05557  119 QIQRQELELSSTNSELEELQERLDLQKAKAQEAEQLRQNLEAQQSSLAEAEQRIKELefeIQSQEQDSEIVKNSKSELAR 198
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    954 IlHDLESRVEEEEERNqilqnekKKMQGHIQDLEEQLDEEEGARQKL-QLEKVTAEAKIKKMEEEILLLEDQNSKFLKEK 1032
Cdd:pfam05557  199 I-PELERELERLREHN-------KHLNENIENKLLLKEEVEDLKRKLeREEGYREELATLELEKEKLEQELKSWEKLAQD 270
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1033 KLMEDRIAECTSQLAEEEEKAKNLAKLKNkqemmiTDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEEL 1112
Cdd:pfam05557  271 TGLNLRSPEDLSRRIEQLQQREITLKEEN------SSLTSSARQLEKAQRELEQELAQYLKNIEDLNKKLKRHKALVRRL 344
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1113 --KIQLAKKEEE-LQAALARGDEEAVQKN---NALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTEL 1186
Cdd:pfam05557  345 qrRVLLLTKERDgMRAILESYDKELTPSNyspQLLERIEEAEDMTQDMQAHNEEMEAQLSVAEEELGGYKQQATTLEREL 424
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*
gi 45382679   1187 EdtLDTTAAQQELRTKREQEVAELKKAIEEetknHEAQIQEIRQR 1231
Cdd:pfam05557  425 Q--ALRQQESLADPSYSKEEVDSLRRKLET----LEAERQRLREQ 463
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
873-1276 6.56e-05

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 47.57  E-value: 6.56e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    873 KPLLQVTRQEEELQAKD--EELMKVKEKQTKVEAELEEMERKhqqlleekniLAEQLQAETELFAEAEEMRARLAAKKQE 950
Cdd:pfam07888    1 KPLDELVTLEEESHGEEggTDMLLVVPRAELLQNRLEECLQE----------RAELLQAQEAANRQREKEKERYKRDREQ 70
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    951 LEEILHDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLK 1030
Cdd:pfam07888   71 WERQRRELESRVAELKEELRQSREKVEELEEKYKELSRSGEELAEEKDALLAQRAESEARIRELEEDIKTLTQRVLERET 150
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1031 EKKLMEDRIAECTSQLAEEEEKAKNLaklknkqEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIE 1110
Cdd:pfam07888  151 ELERMKERVKKAGAQRKEEEAERKQL-------QAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLT 223
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1111 ELKIQLAKKeEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESE-KASRNKAEKQKRDLSEELEALK------ 1183
Cdd:pfam07888  224 TAHRKEAEN-EALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAElHQARLQAAQLTLQLADASLALRegrarw 302
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1184 -TELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANL---EKNKQG 1259
Cdd:pfam07888  303 aQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASLrvaQKEKEQ 382
                          410
                   ....*....|....*..
gi 45382679   1260 LESDNKELACEVKVLQQ 1276
Cdd:pfam07888  383 LQAEKQELLEYIRQLEQ 399
GumC COG3206
Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane ...
1560-1874 6.74e-05

Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225747 [Multi-domain]  Cd Length: 458  Bit Score: 47.44  E-value: 6.74e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1560 ELEKSKRTLEQQVEEMRtQLEELEDELQATEDAKLRLEVNMQAMK-AQFERDLQARDeQNEEKKRMLVKQVRELEAELED 1638
Cdd:COG3206   87 EILQSRSVLEKVIDKLK-LDDDPEFVGKPLIASFLRLLKDLIGPDpTIFEISYRLDD-LLESLKVLRAGRSRVIELSYTS 164
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1639 ERKQRAlAVAAKKKMEMDLKD-LEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEkklkgLE 1717
Cdd:COG3206  165 NDPKLA-AKLANALAQAYLADqLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLL-----SE 238
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1718 AEILQLQEEFAASERARRHAEQERDELADEIANSasgkSALLDEKRRLEARIAQLeeeleeeqsnmelLNERFRKTTLQV 1797
Cdd:COG3206  239 QQLSALNTQLQSARARLAQAEARLASLLQLLPLG----REAAALREVLESPTIQD-------------LRQQYAQVRQQI 301
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679 1798 DTLNSELAGERSAAQKSENARQQLERQnkeLKAKLQELEGSVKSKFKAtistLEAKIAQLEEQLEQEAKERAAANKL 1874
Cdd:COG3206  302 ADLSTELGAKHPQLVALEAQLAELRQQ---IAAELRQILASLPNELAL----LEQQEAALEKELAQLKGRLSKLPKL 371
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
1581-1858 7.22e-05

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 47.64  E-value: 7.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1581 ELEDELQATEDAKLRLEvnmqAMKAQFERDLQARDEQNEEKKRmlvkqvrELEAELEDERKQRALAVAAKKKMEMDLKDL 1660
Cdd:PRK05035  440 AIEQEKKKAEEAKARFE----ARQARLEREKAAREARHKKAAE-------ARAAKDKDAVAAALARVKAKKAAATQPIVI 508
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1661 EGQIEAANKARdEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEF-----AASERARR 1735
Cdd:PRK05035  509 KAGARPDNSAV-IAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAKAKKAAQQAANAEAEEEvdpkkAAVAAAIA 587
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1736 HAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMEllnerfrkTTLQVDTLNSELAGERSAAQKSE 1815
Cdd:PRK05035  588 RAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAE--------PEEPVDPRKAAVAAAIARAKARK 659
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 45382679  1816 NARQQLErqnkelkAKLQELEGSVKSKFKATISTLEAKIAQLE 1858
Cdd:PRK05035  660 AAQQQAN-------AEPEEAEDPKKAAVAAAIARAKAKKAAQQ 695
PRK01156 PRK01156
chromosome segregation protein; Provisional
882-1379 7.26e-05

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 47.97  E-value: 7.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   882 EEELQAKDEELMKVKEKQTKVEA-------ELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEI 954
Cdd:PRK01156  189 EEKLKSSNLELENIKKQIADDEKshsitlkEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSME 268
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   955 LHDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQ---LEKVTAEAKIKKMEEeillLEDQNSKFLKE 1031
Cdd:PRK01156  269 LEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSnidAEINKYHAIIKKLSV----LQKDYNDYIKK 344
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1032 KKLMEDRIAECT----------SQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQ 1101
Cdd:PRK01156  345 KSRYDDLNNQILelegyemdynSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSK 424
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1102 IAELQAQIEELKIQLAKKEEELQAALARG----------------------------DEEAVQKNNALKVIRELQAQIAE 1153
Cdd:PRK01156  425 VSSLNQRIRALRENLDELSRNMEMLNGQSvcpvcgttlgeeksnhiinhynekksrlEEKIREIEIEVKDIDEKIVDLKK 504
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1154 LQEDLESEKASRNKAEKQKrdlseeLEALKTELEDTLDTTAAQQELRTKREQEVAELKKA-IEEETKNHEAQIQEIRQRH 1232
Cdd:PRK01156  505 RKEYLESEEINKSINEYNK------IESARADLEDIKIKINELKDKHDKYEEIKNRYKSLkLEDLDSKRTSWLNALAVIS 578
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1233 ATALEELSEQLEQAKRFKANLEKNKQGLESDnkelacevkvLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEK 1312
Cdd:PRK01156  579 LIDIETNRSRSNEIKKQLNDLESRLQEIEIG----------FPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKL 648
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679  1313 ANKLQN------ELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNL 1379
Cdd:PRK01156  649 RGKIDNykkqiaEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDI 721
mukB PRK04863
chromosome partition protein MukB;
1198-1994 7.33e-05

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 48.03  E-value: 7.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1198 ELRTKREQEVAELKKAIEEEtknheaqiqeiRQRHatalEELSEQLEQAKRFKANLEknkQGLESDNKELACEVKVLQQV 1277
Cdd:PRK04863  286 EEALELRRELYTSRRQLAAE-----------QYRL----VEMARELAELNEAESDLE---QDYQAASDHLNLVQTALRQQ 347
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1278 KAEsehkrKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELdnvssllEEAEKkgikfakDAASLESQLQDTQELLQE 1357
Cdd:PRK04863  348 EKI-----ERYQADLEELEERLEEQNEVVEEADEQQEENEARA-------EAAEE-------EVDELKSQLADYQQALDV 408
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1358 -ETR-----QKLNLSSRIRQL-----------EEEKNNLQEQQEEEEEARKNLEKQMLALQA---QLAEAKKKVDDDLGT 1417
Cdd:PRK04863  409 qQTRaiqyqQAVQALERAKQLcglpdltadnaEDWLEEFQAKEQEATEELLSLEQKLSVAQAahsQFEQAYQLVRKIAGE 488
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1418 IEGLE--ENKKKLLKDMES---LSQRLEEkamaydklektknrLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEk 1492
Cdd:PRK04863  489 VSRSEawDVARELLRRLREqrhLAEQLQQ--------------LRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDE- 553
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1493 nisaryaeerDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMsSKDDVGKNVHEL-----EKSKRT 1567
Cdd:PRK04863  554 ----------DELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA-ARAPAWLAAQDAlarlrEQSGEE 622
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1568 LE--QQVEEMRTQLEELEDELQATEDaklRLEVNMQAMKAQFERdLQARDEQNEEKKRMLVKQVR-ELEAELEDE----- 1639
Cdd:PRK04863  623 FEdsQDVTEYMQQLLERERELTVERD---ELAARKQALDEEIER-LSQPGGSEDPRLNALAERFGgVLLSEIYDDvsled 698
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1640 ---------RKQRALAV----AAKKKME------MDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDyqRELEEARASRD 1700
Cdd:PRK04863  699 apyfsalygPARHAIVVpdlsDAAEQLAgledcpEDLYLIEGDPDSFDDSVFSVEELEKAVVVKIAD--RQWRYSRFPEV 776
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1701 EIFAQsKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSAS---------GKSALLDEKRRLEARIAQ 1771
Cdd:PRK04863  777 PLFGR-AAREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAvafeadpeaELRQLNRRRVELERALAD 855
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1772 LEEELEEEQSNMELLNERF--------RKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELkAKLQELEGSVKSKf 1843
Cdd:PRK04863  856 HESQEQQQRSQLEQAKEGLsalnrllpRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNAL-AQLEPIVSVLQSD- 933
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1844 KATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTE------------------KKLKEVFMQVEDERrhaDQYKEQMEK 1905
Cdd:PRK04863  934 PEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAhfsyedaaemlaknsdlnEKLRQRLEQAEQER---TRAREQLRQ 1010
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1906 ANARMKQLKRQLEEAEEEATRANASRRKLQRELDDAT-----EANEGLSREVSTLKNRLRRggpitfssSRSGRRQLHIE 1980
Cdd:PRK04863 1011 AQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGvpadsGAEERARARRDELHARLSA--------NRSRRNQLEKQ 1082
                         890
                  ....*....|....
gi 45382679  1981 GASLELSDDDAESK 1994
Cdd:PRK04863 1083 LTFCEAEMDNLTKK 1096
YhaN COG4717
Uncharacterized protein YhaN, contains AAA domain [Function unknown];
1264-1869 8.43e-05

Uncharacterized protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 227061 [Multi-domain]  Cd Length: 984  Bit Score: 47.92  E-value: 8.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1264 NKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRvELAEKANKLQNELDNVSSLLEeaekkgikfakdaas 1343
Cdd:COG4717  180 NPQINQLLEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLA-ELRSELRADRDHIRALRDAVE--------------- 243
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1344 LESQLQDTQELLQEETRQKLNLSS----RIRQLEEEKNNLQEQQEEEEEARKNLEkQMLALQAQLAEAKKKVDDDLgtiE 1419
Cdd:COG4717  244 LWPRLQEWKQLEQELTRRREELATfprdGVLRLEKREAHLQKTEAEIDALLVRLA-ELKDLASQLIPAKEAVLQAL---V 319
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1420 GLEENKKKLLKDMESLSQRLEE-KAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSnlekKQKKFDQMLAEEKNISARY 1498
Cdd:COG4717  320 RLHQQLSEIKASAFELTETLAGiEADLRDKEEAAGNGFEAERVHDLRSLECMLRYQS----SQRELKQTEAAYCKRLDEK 395
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1499 AEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQ 1578
Cdd:COG4717  396 RLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDTAWQKQRFLREKQTAFERQKTEHTKII 475
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1579 LEELEDELQATEDAKLRL---EVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAEL--EDERKQRALAVAAKKKM 1653
Cdd:COG4717  476 ALRLAGMLLVALSRLLTSlifQIIFAVAQIVFLSAEIKSSSRAVREEKAAVTDIPEELARLliTDELPELAVDLLVQSRI 555
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1654 EMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARA--------SRDEI------FAQSKESEKKLKGLEAE 1719
Cdd:COG4717  556 RQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDelglsrelSPEQQldilstMKDLKKLMQKKAELTHQ 635
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1720 ILQLQEEfaaserarRHAEQERDE-LADEIANSASGKSALLDEKRRL--------EARIAQLEEELEEEQSNMELLNERF 1790
Cdd:COG4717  636 VARLREE--------QAAFEERVEgLLAVLEAQFIDLSTLFCVQRLRvaaelqkeEARLALEGNIERTKELNDELRAELE 707
                        570       580       590       600       610       620       630
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679 1791 RKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEGSVKSKFKATISTLEAKIAQLEEQLEQEAKERA 1869
Cdd:COG4717  708 LHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDAL 786
EzrA pfam06160
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ...
1059-1490 9.06e-05

Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation.


Pssm-ID: 428797 [Multi-domain]  Cd Length: 542  Bit Score: 47.16  E-value: 9.06e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1059 LKNKQEMMITDLEERlKKEEKTR---QELEKAKR-KLDGETtdlQDQIAELQAQIEELK-IQLAKKEEELQAAlargdEE 1133
Cdd:pfam06160    4 LRKKIYKEIDELEER-KNELMNLpvqEELSKVKKlNLTGET---QEKFEEWRKKWDDIVtKSLPDIEELLFEA-----EE 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1134 AVQKNN---ALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDtldttaAQQELRTKREQeVAEL 1210
Cdd:pfam06160   75 LNDKYRfkkAKKALDEIEELLDDIEEDIKQILEELDELLESEEKNREEVEELKDKYRE------LRKTLLANRFS-YGPA 147
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1211 KKAIEEETKNHEAQIQEirqrhataLEELSEQ--LEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVkaesehkrkkL 1288
Cdd:pfam06160  148 IDELEKQLAEIEEEFSQ--------FEELTESgdYLEAREVLEKLEEETDALEELMEDIPPLYEELKTE----------L 209
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1289 DAQVQELTAKVTEGER-----LRVELAEKANKLQNELDNVSSLLEEAEKKgiKFAKDAASLESQLQDTQELLQEETRQKL 1363
Cdd:pfam06160  210 PDQLEELKEGYREMEEegyalEHLNVDKEIQQLEEQLEENLALLENLELD--EAEEALEEIEERIDQLYDLLEKEVDAKK 287
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1364 NLSSRIRQLEEEKNNLqeqqeeeeearknlEKQMLALQAQLAEAKKK---VDDDLGTIEGLEENKKKLLKDMESLSQRLE 1440
Cdd:pfam06160  288 YVEKNLPEIEDYLEHA--------------EEQNKELKEELERVQQSytlNENELERVRGLEKQLEELEKRYDEIVERLE 353
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|
gi 45382679   1441 EKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAE 1490
Cdd:pfam06160  354 EKEVAYSELQEELEEILEQLEEIEEEQEEFKESLQSLRKDELEAREKLDE 403
PLN03188 PLN03188
kinesin-12 family protein; Provisional
1031-1233 9.27e-05

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 47.62  E-value: 9.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1031 EKKLMEDRIaectsQLAEEEEKAKNLAklknkqEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQ------DQIAE 1104
Cdd:PLN03188 1046 EKKLEQERL-----RWTEAESKWISLA------EELRTELDASRALAEKQKHELDTEKRCAEELKEAMQmameghARMLE 1114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1105 LQAQIEELKIQLAKKEEELQAAL---ARGDEEAVQKNNALKVIRELQAQIAELqedleseKASRnkaEKQKRDLSEELEA 1181
Cdd:PLN03188 1115 QYADLEEKHIQLLARHRRIQEGIddvKKAAARAGVRGAESKFINALAAEISAL-------KVER---EKERRYLRDENKS 1184
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679  1182 LKTELEDTLDTTAAQQELRT-------------KR----EQEVAELKKAIEEETKNHEAQIQEIRQRHA 1233
Cdd:PLN03188 1185 LQAQLRDTAEAVQAAGELLVrlkeaeealtvaqKRamdaEQEAAEAYKQIDKLKRKHENEISTLNQLVA 1253
HEC1 COG5185
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ...
1074-1478 1.00e-04

Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227512 [Multi-domain]  Cd Length: 622  Bit Score: 47.28  E-value: 1.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1074 LKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAalargdeeavqknnalkvIRELQAQIAE 1153
Cdd:COG5185  245 LKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQK------------------IKTLREKWRA 306
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1154 LQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTldttaaQQELRTKREQEvAELKKAIEEETKNHEaQIQEIRQRHa 1233
Cdd:COG5185  307 LKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELK------EEEIKALQSNI-DELHKQLRKQGISTE-QFELMNQER- 377
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1234 talEELSEQLEQAKRFKANLEKNKQGLESDNKELACEV-KVLQQVKAESEHKRKKLDAQVQ-----ELTAKVTEGERLRV 1307
Cdd:COG5185  378 ---EKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLeKTLRQYDSLIQNITRSRSQIGHnvndsSLKINIEQLFPKGS 454
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1308 ELAEKANKLQNEL-DNVSSLLEEAEKKGIKFAKDAASLESqlqDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEE 1386
Cdd:COG5185  455 GINESIKKSILELnDEIQERIKTEENKSITLEEDIKNLKH---DINELTQILEKLELELSEANSKFELSKEENERELVAQ 531
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1387 EEARKNLEKQMLALQAQLAEAKKKVDDDLGTIE-GLEENKKKLLKDMESLSQrleEKAMAYDKLEKTKNRLQQELDDLMV 1465
Cdd:COG5185  532 RIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEiKLDELKVDLNRKRYKIHK---QVIHVIDITSKFKINIQSSLEDLEN 608
                        410
                 ....*....|...
gi 45382679 1466 DLDHQRQIVSNLE 1478
Cdd:COG5185  609 ELGKVIEELRNLE 621
ATG16 pfam08614
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ...
1096-1267 1.05e-04

Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.


Pssm-ID: 430106 [Multi-domain]  Cd Length: 176  Bit Score: 44.92  E-value: 1.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1096 TDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKnnalkvIRELQAQIAELQEDLESEKASRNKAEKQKRDL 1175
Cdd:pfam08614   10 NRLADRTALLEAENAALQSEPESVPPSTSSSTASASPVQSAS------IQSLEQLLAQLREELAELYRSRGELAQQLVDL 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1176 SEELEALKTELEdtldttAAQQELRtKREQEVAELkkaiEEETKNHEAQIQEIRQRHATALEE---LSEQLEQAkrfkan 1252
Cdd:pfam08614   84 NEELQELEKKLR------EDERRLA-ELEAERAQL----EEKLRDREEELREKRKLNQDLQDElvaLQLQLNMA------ 146
                          170
                   ....*....|....*
gi 45382679   1253 lEKNKQGLESDNKEL 1267
Cdd:pfam08614  147 -EEKLRKLEKENREL 160
CwlO1 COG3883
Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown];
1052-1247 1.16e-04

Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 226400 [Multi-domain]  Cd Length: 265  Bit Score: 45.86  E-value: 1.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1052 KAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLA------KKEEELQA 1125
Cdd:COG3883   25 FAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAelkeniVERQELLK 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1126 ALARGDE-------------------EAVQKNNALKVIRELQAQIAELQEDlesEKASRNKAEKQKRDLSEELEALKTEL 1186
Cdd:COG3883  105 KRARAMQvngtatsyidvilnsksfsDLISRVTAISVIVDADKKILEQQKE---DKKSLEEKQAALEDKLETLVALQNEL 181
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 45382679 1187 EDTLDTTAAQQELRTK-------REQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAK 1247
Cdd:COG3883  182 ETQLNSLNSQKAEKNAliaalaaKEASALGEKAALEEQKALAEAAAAEAAKQEAAAKAAAQEQAALQA 249
DUF4686 pfam15742
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ...
1079-1441 1.17e-04

Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.


Pssm-ID: 434900 [Multi-domain]  Cd Length: 384  Bit Score: 46.60  E-value: 1.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1079 KTRQELEKAKRKLDGET---TDLQDQIAELQAQIEELKIQLAKKEEELQaalargdeeavqknnalkvirelqaQIAELQ 1155
Cdd:pfam15742   59 KIKAELKQAQQKLLDSTkmcSSLTAEWEHCQQKIRELELEVLKQAQSIK-------------------------SQNSLQ 113
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1156 EDLESEKASRNKAEKQKRDLSEELE-ALKTELEDTLDTTAAQQELRTKREQEvaelkkaIEEETKNHEAQIQEIRQRHAT 1234
Cdd:pfam15742  114 EKLAQEKSKVADAEKKILELQQKLEhAHKVCLTETCILEKKQLEEEIKEAQE-------NEAKLKQQYQEEQQKRKLLDQ 186
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1235 ALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKAN 1314
Cdd:pfam15742  187 NVNELQQQVRSLQDKEAQLEMTNSQQQLRIQQQEAQLKQLENEKRKSDEHLKSNQELSEKLSSLQQEKEALQEELQQVLK 266
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1315 KLQNELDNVSslleeaEKKGIKFAKdaaslesqLQDTQELLQEETRQKlnlSSRIRQLEEEKNNLQEQQEEEeearKNLE 1394
Cdd:pfam15742  267 QLDVHVRKYN------EKHHHHKAK--------LRRAKDRLVHEVEQR---DERIKQLENEIRILRQQIEKE----KAFQ 325
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*..
gi 45382679   1395 KQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEE 1441
Cdd:pfam15742  326 KQVTAENDTLLLEKRKLLEQLTEQEEVIKNNKRTISSVQNRVLFLEK 372
tolA_full TIGR02794
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ...
1560-1771 1.26e-04

TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]


Pssm-ID: 274303 [Multi-domain]  Cd Length: 346  Bit Score: 46.38  E-value: 1.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1560 ELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKlrlevnmqamKAQferdlQARDEQNEEKKrmlvkQVRELEAELEDE 1639
Cdd:TIGR02794   72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAK----------QAE-----QAAKQAEEKQK-----QAEEAKAKQAAE 131
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1640 RKQRALAVAAKKKMEmdlkdlegqiEAANKARDEAIKqlrKLQAQMKdyqRELEEARASRDEIFAQSKESEKKLKGLEAE 1719
Cdd:TIGR02794  132 AKAKAEAEAERKAKE----------EAAKQAEEEAKA---KAAAEAK---KKAEEAKKKAEAEAKAKAEAEAKAKAEEAK 195
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 45382679   1720 ILQLQEEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQ 1771
Cdd:TIGR02794  196 AKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADEAELGDIFGLASGSNAE 247
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
875-1322 1.47e-04

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 47.14  E-value: 1.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    875 LLQVTRQEEELQAKDEELMKVKEKQTKVEAEL-----------EEMERKHQQLLEEKNILAEqlqAETELFAEAEEMRAR 943
Cdd:pfam12128  463 LLQLENFDERIERAREEQEAANAEVERLQSELrqarkrrdqasEALRQASRRLEERQSALDE---LELQLFPQAGTLLHF 539
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    944 LAAKKQELE---------EILH--DLESRVEEEEERNQI------LQNEKKKMQGHIQDLEEQLDEEEGARQKLQlekvT 1006
Cdd:pfam12128  540 LRKEAPDWEqsigkvispELLHrtDLDPEVWDGSVGGELnlygvkLDLKRIDVPEWAASEEELRERLDKAEEALQ----S 615
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1007 AEAKIKKMEEEILLLedqNSKFLKEKKLMEDriAECTSQLAEEEEKAKNLAKlKNKQEMMITDLEERLKKEEKTRQELEK 1086
Cdd:pfam12128  616 AREKQAAAEEQLVQA---NGELEKASREETF--ARTALKNARLDLRRLFDEK-QSEKDKKNKALAERKDSANERLNSLEA 689
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1087 AKRKLDgetTDLQDQIAELQAQIEELKIQLAKK----EEELQAALARGDEEAVQKNNALKvirelqAQIAELQEDLESEK 1162
Cdd:pfam12128  690 QLKQLD---KKHQAWLEEQKEQKREARTEKQAYwqvvEGALDAQLALLKAAIAARRSGAK------AELKALETWYKRDL 760
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1163 ASRNKAEKQKRDLSEELEALKTELEDTldttaaqqelrTKREQEVAELKKAIEE----ETKNHEAQIQEIRQRHATALEE 1238
Cdd:pfam12128  761 ASLGVDPDVIAKLKREIRTLERKIERI-----------AVRRQEVLRYFDWYQEtwlqRRPRLATQLSNIERAISELQQQ 829
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1239 LSEQLEQAKRFKANLEKNKQGLESDNKELACEvkvLQQVKAESEH-KRKKLDAQVQELTAKVTE----GERLRVELAEKA 1313
Cdd:pfam12128  830 LARLIADTKLRRAKLEMERKASEKQQVRLSEN---LRGLRCEMSKlATLKEDANSEQAQGSIGErlaqLEDLKLKRDYLS 906

                   ....*....
gi 45382679   1314 NKLQNELDN 1322
Cdd:pfam12128  907 ESVKKYVEH 915
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
1371-1917 1.57e-04

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 46.65  E-value: 1.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1371 QLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEenkKKLLKDMESLSQRLEEkAMAYDKLE 1450
Cdd:pfam05557   10 RLSQLQNEKKQMELEHKRARIELERKASALARQLERESDRNQELQKRIRLLE---KREAEAEEALREQAEL-NRLKKKNL 85
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1451 KTKNRLQQELDDLMVDLdhqRQIVSNLekkqkkfdqmlaeeKNISARYAEERDRAEAEAREKETKalslaraleealeak 1530
Cdd:pfam05557   86 EALNKKLNEKESQLADA---REVISCL--------------KNELSELRRQIQRQELELSSTNSE--------------- 133
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1531 eeferqnkqlradMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRT---QLEELEDELQATEDAKLRLEvNMQAMKAQF 1607
Cdd:pfam05557  134 -------------LEELQERLDLQKAKAQEAEQLRQNLEAQQSSLAEaeqRIKELEFEIQSQEQDSEIVK-NSKSELARI 199
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1608 ---ERDLQARDEQNE------EKKRMLVKQVRELEAELEDERKQRALAVA---AKKKMEMDLKDLEG------------- 1662
Cdd:pfam05557  200 pelERELERLREHNKhlneniENKLLLKEEVEDLKRKLEREEGYREELATlelEKEKLEQELKSWEKlaqdtglnlrspe 279
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1663 ----------QIEAANKARDEAI-KQLRKLQAQMKDYQRELEEARAsrdeifaQSKESEKKLKGLEAEILQLQEEFAASE 1731
Cdd:pfam05557  280 dlsrrieqlqQREITLKEENSSLtSSARQLEKAQRELEQELAQYLK-------NIEDLNKKLKRHKALVRRLQRRVLLLT 352
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1732 RARRHAEQERDELADEIANSASGKSaLLDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSAA 1811
Cdd:pfam05557  353 KERDGMRAILESYDKELTPSNYSPQ-LLERIEEAEDMTQDMQAHNEEMEAQLSVAEEELGGYKQQATTLERELQALRQQE 431
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1812 QKSENARQQLERQnkELKAKLQELEGSVkSKFKATISTLEAKIAQLEEQLEQEAKeraaanklvrrtekKLKEVFMQVED 1891
Cdd:pfam05557  432 SLADPSYSKEEVD--SLRRKLETLEAER-QRLREQKNELEMELERRCLQGDYDPK--------------KTKVLHLSMNP 494
                          570       580
                   ....*....|....*....|....*.
gi 45382679   1892 ERRHADQYKEQMEKANARMKQLKRQL 1917
Cdd:pfam05557  495 AAEAYQQRANDLEKLQAEIERLKRRL 520
HEC1 COG5185
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ...
908-1365 1.59e-04

Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227512 [Multi-domain]  Cd Length: 622  Bit Score: 46.51  E-value: 1.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  908 EMERKHQQLLEEKNIlaEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEeerNQILQNE---KKKMQGHIQ 984
Cdd:COG5185  210 DMCLQPLKTLDQQDR--YELMVEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKF---VHIINTDianLKTQNDNLY 284
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  985 DLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQE 1064
Cdd:COG5185  285 EKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQG 364
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1065 MMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKiQLAKKEEELQAALARGDEEAVQKNNALkvi 1144
Cdd:COG5185  365 ISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLE-KTLRQYDSLIQNITRSRSQIGHNVNDS--- 440
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1145 rELQAQIAELQEDLESEKASRNKAEKQKRDLSEELeaLKTELEDTLdttaaqqelrtKREQEVAELKKAIEEETKnheaQ 1224
Cdd:COG5185  441 -SLKINIEQLFPKGSGINESIKKSILELNDEIQER--IKTEENKSI-----------TLEEDIKNLKHDINELTQ----I 502
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1225 IQEIRQRHATALEELSEQLEQAKRfkanlEKNKQGLESDNKElacevKVLQQVKAESEHKRKKLDAQVQELTAKVtegER 1304
Cdd:COG5185  503 LEKLELELSEANSKFELSKEENER-----ELVAQRIEIEKLE-----KELNDLNLLSKTSILDAEQLVQSTEIKL---DE 569
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45382679 1305 LRVELAEKANKLQNEldnVSSLLEEAekkgIKFakdAASLESQLQDTQELLQEETRQKLNL 1365
Cdd:COG5185  570 LKVDLNRKRYKIHKQ---VIHVIDIT----SKF---KINIQSSLEDLENELGKVIEELRNL 620
ERM pfam00769
Ezrin/radixin/moesin family; This family of proteins contain a band 4.1 domain (pfam00373), at ...
1665-1771 1.71e-04

Ezrin/radixin/moesin family; This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins.


Pssm-ID: 425860 [Multi-domain]  Cd Length: 247  Bit Score: 45.32  E-value: 1.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1665 EAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDEL 1744
Cdd:pfam00769    2 EEAEREKQELEERLKQYEEETRKAQEELEESEETAELLEEKLRVAEEEAELLEQKAQEAEEEKERLEESAEMEAEEKEQL 81
                           90       100
                   ....*....|....*....|....*..
gi 45382679   1745 ADEIANSASGKSALLDEKRRLEARIAQ 1771
Cdd:pfam00769   82 ERELREAQEEVARLEEESERKEEEAER 108
COG4913 COG4913
Uncharacterized protein, contains a C-terminal ATPase domain [Function unknown];
1067-1766 1.75e-04

Uncharacterized protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 227250 [Multi-domain]  Cd Length: 1104  Bit Score: 46.94  E-value: 1.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1067 ITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAE-LQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIR 1145
Cdd:COG4913  264 LVQLKNRREKAQQSKDHANALKKALPTVGNRIKKEEQEtLVRQFTVEQTQAKSKVESAKIETDRAREMETLAHDNVKQIV 343
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1146 ELQAQI-AELQEDLESEKASRNKAekqkrdlSEELEALKTELEDTLDTTAAQ-QELRTKREQEVAELKKAIE----EETK 1219
Cdd:COG4913  344 GAQHGIlSAKREGAVDKRRTISTA-------RAGLDALVKGLGGAAPESAEElLELNNAARLTVDEYPAAREalesAGQR 416
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1220 NHEAqIQEIRQRHATALEELSEQLEQAKRFKANLEKNK----QGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQeL 1295
Cdd:COG4913  417 NVED-RTRAVDEFKAADQELSSLSKGSSNIEYRLLQVRenlcQDLGVSPRDMPFAGELIDPNNAEWEPVVQRILGGFA-A 494
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1296 TAKVTEGERLRVELAEKANKLQNELdNVSSLLEEAEKKGIKFAKDAASLESQLQDT--QELLQEETRQKLNLS--SRIRQ 1371
Cdd:COG4913  495 EMLVPHGLLPRVRDWVNAKHLAALL-KFNGVVTTGEYKTSRFPADSLIRKVDVVESpfRDWVNQELGKRFNIRcvRTPEE 573
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1372 LEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDDDlgTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEK 1451
Cdd:COG4913  574 LSALGPGVTILGQTGDPTTRWEKDDRRKLGDRSTYRLGSTNDA--KVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQE 651
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1452 TKNRLQ--QELDDLMVDLDH-QRQIvsnlEKKQKKFDQmLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALE 1528
Cdd:COG4913  652 QANALAhiQALNFASIDLPSaQRQI----AELQARLER-LTHTQSDIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKK 726
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1529 AKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQL-EELEDELQATEDAKLRLEVNM-QAMKAQ 1606
Cdd:COG4913  727 DLKRAAMLSRKVHSIAKQGMTGALQALGAAHFPQVAPEQHDDIVDIERIEHrRQLQKRIDAVNARLRRLREEIiGRMSDA 806
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1607 FERDLQARDEQNEEkkrmlVKQVRELEAELEDERKQRALAVAAKKKMEMdlkdlegqieaaNKARDEAIKQlrkLQAQMK 1686
Cdd:COG4913  807 KKEDTAALSEVGAE-----LDDIPEYLARLQTLTEDALPEFLARFQELL------------NRSSDDGVTQ---LLSHLD 866
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1687 DYQRELEEARASRDEIFAQSKESE--------KKLKGLEAEILQLQEEFAASERAR------------RHAEQER--DEL 1744
Cdd:COG4913  867 HERALIEERIEAINDSLRRVDFNSgrylhidiAKQPVPHDSMRTFQQALRALTSGRfvgddgesqykaLQALVGLiiDAC 946
                        730       740
                 ....*....|....*....|..
gi 45382679 1745 ADEIANSASGKSALLDEKRRLE 1766
Cdd:COG4913  947 ERHDSADTRWARAVLDPRFRLE 968
GumC COG3206
Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane ...
1000-1209 1.92e-04

Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225747 [Multi-domain]  Cd Length: 458  Bit Score: 46.28  E-value: 1.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1000 LQLEKVTAEAKIKKMEEEILLLEDQNSKFLkEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEK 1079
Cdd:COG3206  207 LRARLQEAEAQVEDFRAQHGLTDAARGQLL-SEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESP 285
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1080 TRQELEKAKrkldgetTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQ----KNNALKVIRELQAQIAELQ 1155
Cdd:COG3206  286 TIQDLRQQY-------AQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQilasLPNELALLEQQEAALEKEL 358
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 45382679 1156 EDLESEKASRNKAEKQKRDLSEELEALKTELEDTLdttAAQQELRTKREQEVAE 1209
Cdd:COG3206  359 AQLKGRLSKLPKLQVQLRELEREAEAARSLYETLL---QRYQELSIQEASPIGN 409
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
1560-1961 2.10e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 46.50  E-value: 2.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1560 ELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFErdlQARDEQNEEKKRMLVKQVRELEAELEDE 1639
Cdd:TIGR00618  250 EAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAH---IKAVTQIEQQAQRIHTELQSKMRSRAKL 326
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1640 RKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQlrklqaqmkdyqreleearASRDEIFAQSKESEKKLKGLEA- 1718
Cdd:TIGR00618  327 LMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVA-------------------TSIREISCQQHTLTQHIHTLQQq 387
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1719 -EILQLQEEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQv 1797
Cdd:TIGR00618  388 kTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQ- 466
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1798 dtlnsELAGERSAAQKSENARQQLERQNKELKAKLQELEGSvKSKFKATISTLEAKIAQLEEqLEQEAKERAAANKLVRR 1877
Cdd:TIGR00618  467 -----SLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEE-PCPLCGSCIHPNPARQDIDN-PGPLTRRMQRGEQTYAQ 539
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1878 TEKKLKEVFMQVEDERRHADQYKEQMEKANARMKQLKRQleeaeeeATRANASRRKLQRELDDATEANEGLSREVSTLKN 1957
Cdd:TIGR00618  540 LETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQC-------DNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612

                   ....
gi 45382679   1958 RLRR 1961
Cdd:TIGR00618  613 EQHA 616
PRK10246 PRK10246
exonuclease subunit SbcC; Provisional
825-1413 2.33e-04

exonuclease subunit SbcC; Provisional


Pssm-ID: 182330 [Multi-domain]  Cd Length: 1047  Bit Score: 46.33  E-value: 2.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   825 QAVCRGYLARKAFAKKQQQLSALKILQRncAAYLKLrhwQWWRVFTKVKPLLQVTRQEEELQAKDEELMKVKEKQTKVEA 904
Cdd:PRK10246  261 RRQQALQQALAAEEKAQPQLAALSLAQP--ARQLRP---HWERIQEQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAA 335
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   905 eleemeRKHQQLLEEKNILAEQLQAETE-------------LFAEAEEMRARLAAKKQELEEILHDLES----------- 960
Cdd:PRK10246  336 ------KQSAELQAQQQSLNTWLAEHDRfrqwnnelagwraQFSQQTSDREQLRQWQQQLTHAEQKLNAlpaitltltad 409
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   961 ---RVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEillLEDQNSKFLKEKKL--M 1035
Cdd:PRK10246  410 evaAALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQR---YKEKTQQLADVKTIceQ 486
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1036 EDRIAECTSQLAeeeekaknlaKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDG---ETTDLQDQIAELQAQIEEL 1112
Cdd:PRK10246  487 EARIKDLEAQRA----------QLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLDAlekEVKKLGEEGAALRGQLDAL 556
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1113 KIQLAKKEEELQAALArgDEEAVQKN-----NALKVIRELQAQIA---------ELQEDLESEK----ASRNKAEKQKRD 1174
Cdd:PRK10246  557 TKQLQRDESEAQSLRQ--EEQALTQQwqavcASLNITLQPQDDIQpwldaqeehERQLRLLSQRhelqGQIAAHNQQIIQ 634
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1175 LSEELEALKTELEDTLDTTA-------AQQELRTKREQEVAELKKaieeetknHEAQIQEIRQRHAtALEELSEQLEQAK 1247
Cdd:PRK10246  635 YQQQIEQRQQQLLTALAGYAltlpqedEEASWLATRQQEAQSWQQ--------RQNELTALQNRIQ-QLTPLLETLPQSD 705
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1248 RFKANLE----KNKQGLESDNKELACEVKVLQQvkAESEHKRKKLDAQVQ---ELTAKVTEG----------ERLRVELA 1310
Cdd:PRK10246  706 DLPHSEEtvalDNWRQVHEQCLSLHSQLQTLQQ--QDVLEAQRLQKAQAQfdtALQASVFDDqqaflaalldEETLTQLE 783
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1311 EKANKLQNELDNVSSLLEEAEK----------KGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKnnlq 1380
Cdd:PRK10246  784 QLKQNLENQRQQAQTLVTQTAQalaqhqqhrpDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNR---- 859
                         650       660       670
                  ....*....|....*....|....*....|...
gi 45382679  1381 eqqeeeeearknleKQMLALQAQLAEAKKKVDD 1413
Cdd:PRK10246  860 --------------QQQQALMQQIAQATQQVED 878
ClyA_Cry6Aa-like cd22656
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ...
1560-1698 2.48e-04

Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.


Pssm-ID: 439154 [Multi-domain]  Cd Length: 309  Bit Score: 45.44  E-value: 2.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1560 ELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQ-NEEKKRMLVKQVRELEAELED 1638
Cdd:cd22656  111 ELEEAKKTIKALLDDLLKEAKKYQDKAAKVVDKLTDFENQTEKDQTALETLEKALKDLlTDEGGAIARKEIKDLQKELEK 190
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1639 ERKqrALAVAAKKKMEmDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARAS 1698
Cdd:cd22656  191 LNE--EYAAKLKAKID-ELKALIADDEAKLAAALRLIADLTAADTDLDNLLALIGPAIPA 247
PLN02939 PLN02939
transferase, transferring glycosyl groups
1011-1333 2.59e-04

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 46.05  E-value: 2.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1011 IKKMEEEILLLE-------DQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMiTDLEERLKKEEKTRQE 1083
Cdd:PLN02939  137 IQNAEKNILLLNqarlqalEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEIL-EEQLEKLRNELLIRGA 215
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1084 LEKA-KRKLDGETTDLQDQIAELQAQIEELKIQLA--KKEEELQAALARgdEEAVQKNNalkvIRELQAQIAELQEDLes 1160
Cdd:PLN02939  216 TEGLcVHSLSKELDVLKEENMLLKDDIQFLKAELIevAETEERVFKLEK--ERSLLDAS----LRELESKFIVAQEDV-- 287
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1161 EKASRNKAEKqkrdLSEELEalktELEDTLDTTAAQQelrtkrEQEVAELKkaieeetknheaQIQEIRQRhataLEELS 1240
Cdd:PLN02939  288 SKLSPLQYDC----WWEKVE----NLQDLLDRATNQV------EKAALVLD------------QNQDLRDK----VDKLE 337
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1241 EQLEQAKRFKANLEKnkqglesdnkelaceVKVLQQ-VKAESEHkrkkLDAQVQELTAKVTEGERLRVELAekanklqne 1319
Cdd:PLN02939  338 ASLKEANVSKFSSYK---------------VELLQQkLKLLEER----LQASDHEIHSYIQLYQESIKEFQ--------- 389
                         330
                  ....*....|....
gi 45382679  1320 lDNVSSLLEEAEKK 1333
Cdd:PLN02939  390 -DTLSKLKEESKKR 402
EzrA pfam06160
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ...
882-1216 2.82e-04

Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation.


Pssm-ID: 428797 [Multi-domain]  Cd Length: 542  Bit Score: 45.62  E-value: 2.82e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    882 EEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLleEKNILA-------------EQLQAETELFAEAEEMRAR---LA 945
Cdd:pfam06160   99 EEDIKQILEELDELLESEEKNREEVEELKDKYREL--RKTLLAnrfsygpaideleKQLAEIEEEFSQFEELTESgdyLE 176
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    946 AKK--QELEEILHDLESRVEEEEERNQILQNEKKKmqghiqdleeqldeeegarqklQLEKVtaEAKIKKMEEEILLLED 1023
Cdd:pfam06160  177 AREvlEKLEEETDALEELMEDIPPLYEELKTELPD----------------------QLEEL--KEGYREMEEEGYALEH 232
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1024 QNskFLKEKKLMEDRIAECTSQLA--EEEEKAKNLAKLKNKqemmITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQ 1101
Cdd:pfam06160  233 LN--VDKEIQQLEEQLEENLALLEnlELDEAEEALEEIEER----IDQLYDLLEKEVDAKKYVEKNLPEIEDYLEHAEEQ 306
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1102 IAELQAQIEELK--IQLAKKEEELQAALArgdeeavqknnalKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEEL 1179
Cdd:pfam06160  307 NKELKEELERVQqsYTLNENELERVRGLE-------------KQLEELEKRYDEIVERLEEKEVAYSELQEELEEILEQL 373
                          330       340       350
                   ....*....|....*....|....*....|....*....
gi 45382679   1180 EALKTELEDTLDTTAA--QQELRTKreQEVAELKKAIEE 1216
Cdd:pfam06160  374 EEIEEEQEEFKESLQSlrKDELEAR--EKLDEFKLELRE 410
PRK11281 PRK11281
mechanosensitive channel MscK;
1631-1877 2.85e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 46.06  E-value: 2.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1631 ELEAELeDERKQRALAVAAKKKMEMDLK---DLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSK 1707
Cdd:PRK11281   40 DVQAQL-DALNKQKLLEAEDKLVQQDLEqtlALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETL 118
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1708 ES------EKKLKGLEAEILQLQEEFA-----------ASERARR---HAEQERDELADEIANSASGKSALLDEKR-RLE 1766
Cdd:PRK11281  119 STlslrqlESRLAQTLDQLQNAQNDLAeynsqlvslqtQPERAQAalyANSQRLQQIRNLLKGGKVGGKALRPSQRvLLQ 198
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1767 ARIAQleeeleeeqsnMELLNErFRKTTLQVDTLNSELaGERSAAQKSENArQQLERQnkelkakLQELEGSVKSKfkat 1846
Cdd:PRK11281  199 AEQAL-----------LNAQND-LQRKSLEGNTQLQDL-LQKQRDYLTARI-QRLEHQ-------LQLLQEAINSK---- 253
                         250       260       270
                  ....*....|....*....|....*....|.
gi 45382679  1847 isTLEAKIAQLEEQLEQEAKERAAANKLVRR 1877
Cdd:PRK11281  254 --RLTLSEKTVQEAQSQDEAARIQANPLVAQ 282
PspA COG1842
Phage shock protein A [Transcription, Signal transduction mechanisms];
1011-1186 2.87e-04

Phage shock protein A [Transcription, Signal transduction mechanisms];


Pssm-ID: 224755 [Multi-domain]  Cd Length: 225  Bit Score: 44.23  E-value: 2.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1011 IKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKnLAKLKNKQEMM------ITDLEERLKKEEKTRQEL 1084
Cdd:COG1842   33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE-LALQAGNEDLArealeeKQSLEDLAKALEAELQQA 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1085 EKAKRKLDGETTDLQDQIAELQAQIEELKIQL--AKKEEELQAALARGDEEAVQKnnALKVIRELQAQI---AELQEDLE 1159
Cdd:COG1842  112 EEQVEKLKKQLAALEQKIAELRAKKEALKARKaaAKAQEKVNRSLGGGSSSSAMA--AFERMEEKIEERearAEAAAELA 189
                        170       180       190
                 ....*....|....*....|....*....|.
gi 45382679 1160 SEKAS--RNKAEKQKRD--LSEELEALKTEL 1186
Cdd:COG1842  190 EGSGDdlDKEFAQAGAQsaVDSRLAALKARM 220
Apolipoprotein pfam01442
Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a ...
1084-1244 2.97e-04

Apolipoprotein A1/A4/E domain; These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.


Pssm-ID: 426264 [Multi-domain]  Cd Length: 170  Bit Score: 43.41  E-value: 2.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1084 LEKAKRKLDGETTDLQDQIAElqaQIEELKIQLAKKEEELQAALARGDEEAVQKNNalKVIRELQAQIAELQEDLEseKA 1163
Cdd:pfam01442    8 AEELQEQLGPVAQELVDRLEK---ETEALRERLQKDLEEVRAKLEPYLEELQAKLQ--QNVEELRQRLEPYTEELR--KR 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1164 SRNKAEKQKRDLSEELEALKTELEDTLDTTAAQ-----QELRTKREQEVAELKKAIEEETKNHEAQ----IQEIRQRHAT 1234
Cdd:pfam01442   81 LNADAEELQEKLAPYGEELRERLEQNVDALRARlapyaEELRQKLAERLEELKESLAPYAEEVQAQlsqrLQELREKLEP 160
                          170
                   ....*....|
gi 45382679   1235 ALEELSEQLE 1244
Cdd:pfam01442  161 QAEDLREKLD 170
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
1481-1959 3.06e-04

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 45.81  E-value: 3.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1481 QKKFDQMLAEEKNISAryaEERDRAEAEAREKETKALSLARALEEALEAKEEFERQnkQLRADMEDLMSSKDDVGKNVHE 1560
Cdd:TIGR00606  172 KQKFDEIFSATRYIKA---LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRD--QITSKEAQLESSREIVKSYENE 246
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1561 LEKSKRTLeQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDER 1640
Cdd:TIGR00606  247 LDPLKNRL-KEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQ 325
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1641 KQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEarasrdEIFAQSKESEKKLKGLEAEI 1720
Cdd:TIGR00606  326 RELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLEL------DGFERGPFSERQIKNFHTLV 399
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1721 LQLQEEFAaserarRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMellneRFRKTTLQVDTL 1800
Cdd:TIGR00606  400 IERQEDEA------KTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEEL-----KFVIKELQQLEG 468
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1801 NSELAGERSAAQKSENARQQLERQNKELKAKLQElEGSVKSKfKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEK 1880
Cdd:TIGR00606  469 SSDRILELDQELRKAERELSKAEKNSLTETLKKE-VKSLQNE-KADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMD 546
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679   1881 KLKEVFmqvEDERRHADQYKEQMEKANARmKQLKRQLEEAEEEATRANASRRKLQRELDDATEANEGLSREVSTLKNRL 1959
Cdd:TIGR00606  547 KDEQIR---KIKSRHSDELTSLLGYFPNK-KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQL 621
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1471-1741 3.07e-04

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 45.40  E-value: 3.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1471 RQIVSNLEKKQKKFDQMLAEEKNISaryaEERDRAEAEaREKETKALSLARALEEALEAKEEFERQNKqLRADMEdlmss 1550
Cdd:COG4372   70 RSGVFQLDDIRPQLRALRTELGTAQ----GEKRAAETE-REAARSELQKARQEREAVRQELAAARQNL-AKAQQE----- 138
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1551 kddvgknVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQfERDLQARDEQNEEKKRMLVKQ-- 1628
Cdd:COG4372  139 -------LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQ-VLDLKLRSAQIEQEAQNLATRan 210
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1629 -VRELEAELEderkqralavaakkkmemdlkdlegQIEAANKARDEAIKQLRKlQAQMKDyqreleEARASRDEifaQSK 1707
Cdd:COG4372  211 aAQARTEELA-------------------------RRAAAAQQTAQAIQQRDA-QISQKA------QQIAARAE---QIR 255
                        250       260       270
                 ....*....|....*....|....*....|....
gi 45382679 1708 ESEKKLKGLEAEILQLQEEFAASERARRHAEQER 1741
Cdd:COG4372  256 ERERQLQRLETAQARLEQEVAQLEAYYQAYVRLR 289
HCR pfam07111
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ...
832-1315 3.14e-04

Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.


Pssm-ID: 284517 [Multi-domain]  Cd Length: 749  Bit Score: 45.90  E-value: 3.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    832 LARKAFAKKQQQLSALKILQRNCAAYlklrhwqwwrVFTKVKPllQVTRQEEELQAKD--EELMKVKEKQTKVEAELEEM 909
Cdd:pfam07111  201 LLRKQLSKTQEELEAQVTLVESLRKY----------VGEQVPP--EVHSQTWELERQEllDTMQHLQEDRADLQATVELL 268
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    910 ERKHQQLleeKNILAEQLQAETELFAEAEEMRARLAAKKQEL-----EEIL--------HDLESRVEEEEERNQILQ--- 973
Cdd:pfam07111  269 QVRVQSL---THMLALQEEELTRKIQPSDSLEPEFPKKCRSLlnrwrEKVFalmvqlkaQDLEHRDSVKQLRGQVAElqe 345
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    974 ------NEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIaecTSQLA 1047
Cdd:pfam07111  346 qvtsqsQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWL---ETTMT 422
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1048 EEEEKAKNLAKLKN------KQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEE 1121
Cdd:pfam07111  423 RVEQAVARIPSLSNrlsyavRKVHTIKGLMARKVALAQLRQESCPPPPPAPPVDADLSLELEQLREERNRLDAELQLSAH 502
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1122 ELQAALARGDEEA-VQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELedtldttAAQQELR 1200
Cdd:pfam07111  503 LIQQEVGRAREQGeAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQEL-------TQQQEIY 575
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1201 TKREQE-VAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELAceVKVLQQVKA 1279
Cdd:pfam07111  576 GQALQEkVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEARKEEG--QRLARRVQE 653
                          490       500       510
                   ....*....|....*....|....*....|....*.
gi 45382679   1280 ESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANK 1315
Cdd:pfam07111  654 LERDKNLMLATLQQEGLLSRYKQQRLLAVLPSGLDK 689
CwlO1 COG3883
Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown];
1661-1884 3.40e-04

Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 226400 [Multi-domain]  Cd Length: 265  Bit Score: 44.71  E-value: 3.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1661 EGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERArrhaeqe 1740
Cdd:COG3883   37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA------- 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1741 rdelADEIANSASGKSALLDEKRRLEA--RIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSAAQKSENAR 1818
Cdd:COG3883  110 ----MQVNGTATSYIDVILNSKSFSDLisRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQL 185
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679 1819 QQLERQNKELKAKLQELegsvkskfKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLKE 1884
Cdd:COG3883  186 NSLNSQKAEKNALIAAL--------AAKEASALGEKAALEEQKALAEAAAAEAAKQEAAAKAAAQE 243
AAA_13 pfam13166
AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA ...
1007-1153 3.74e-04

AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.


Pssm-ID: 433006 [Multi-domain]  Cd Length: 712  Bit Score: 45.44  E-value: 3.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1007 AEAKIKKM--EEEILLLEDQNSKFLKEKKLMEDRIA---ECTSQLAEEEEKAKNL--AKLKNKQEMMITDLEERLKKEEK 1079
Cdd:pfam13166  344 LEAKRKEPfkSIELDSVDAKIESIKDLVAAINELIAkhnEITDNLEEEKNKAKKKlwLFLVEEFKAEIDEYKDAYAGLEK 423
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 45382679   1080 TRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDE-EAVQKNNALKVIRELQAQIAE 1153
Cdd:pfam13166  424 AINSLTKEIKNATAEIKKLRAEIRELEKQLRDHKPGADEINKLLAAFGFGELElAFNEEGKGYRIVRKGGSQAAE 498
COG5283 COG5283
Phage-related tail protein [Mobilome: prophages, transposons];
1030-1360 4.16e-04

Phage-related tail protein [Mobilome: prophages, transposons];


Pssm-ID: 227608 [Multi-domain]  Cd Length: 1213  Bit Score: 45.69  E-value: 4.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1030 KEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQI 1109
Cdd:COG5283   36 QFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQF 115
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1110 EELKIQLAKKEEELQAalargdeeavqknnalkvireLQAQIAEL----QEDLESEKASRNKAEKQKRDLSE-------E 1178
Cdd:COG5283  116 GVASEQLMLQQKEIQR---------------------LQYAISTLnksmAAQARLLEQTGNKFGTADAKVVGlresfgrQ 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1179 LEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEetknheaQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQ 1258
Cdd:COG5283  175 TEALNKQLERTKKVADALTYVLDEAQQKLSQALSARLE-------RLQESRTQMSQSSGQLGKRLETDKAGAGALGLLGA 247
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1259 GLESDNKELACEVKVLQQVKAESEHKRKKLDAQvQELTAKVTEGERlrvELAEKANKLQNEL-DNVSSLLEEAEKKGIKF 1337
Cdd:COG5283  248 ALAGSFAAIGAAVRRTAQMNGELMDKTKQVKGA-RDNLGKVTSQGE---EMSDAIQETAEHIkDSGRELSKAAAIGAAAA 323
                        330       340
                 ....*....|....*....|...
gi 45382679 1338 AKDAASLESQLQDTQELLQEETR 1360
Cdd:COG5283  324 MGVAAGKFPTGQEAKPTLKEMAR 346
WEMBL pfam05701
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ...
1031-1413 4.18e-04

Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".


Pssm-ID: 428594 [Multi-domain]  Cd Length: 562  Bit Score: 45.40  E-value: 4.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1031 EKKLMEDRIAECTSQLAEEEEkaknlAKLKNKQEMMIT---------DLEERLKKEEKTRQELEKAKRKLDGETTDLQDQ 1101
Cdd:pfam05701   43 ELEKVQEEIPEYKKQSEAAEA-----AKAQVLEELESTkrlieelklNLERAQTEEAQAKQDSELAKLRVEEMEQGIADE 117
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1102 I-AELQAQIEELKIQLAKKEEELQAAlaRGDEEAVQKNNALKVI-RELQAQIAElqedlESEKASRnKAEKQKRDLSEEL 1179
Cdd:pfam05701  118 AsVAAKAQLEVAKARHAAAVAELKSV--KEELESLRKEYASLVSeRDIAIKRAE-----EAVSASK-EIEKTVEELTIEL 189
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1180 EALKTELEdtldttAAQQELRTKREQEVAeLKKAIEEETKNHEAQIQEIRQRhataLEELSEQLEQAKRFKANLEKNKQG 1259
Cdd:pfam05701  190 IATKESLE------SAHAAHLEAEEHRIG-AALAREQDKLNWEKELKQAEEE----LQRLNQQLLSAKDLKSKLETASAL 258
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1260 LESDNKELACEVkvlqqvkaesehkrkklDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEA--EKKGIKF 1337
Cdd:pfam05701  259 LLDLKAELAAYM-----------------ESKLKEEADGEGNEKKTSTSIQAALASAKKELEEVKANIEKAkdEVNCLRV 321
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679   1338 AkdAASLESQLQDTQELLqEETRQKLNLSS-RIRQLEEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKVDD 1413
Cdd:pfam05701  322 A--AASLRSELEKEKAEL-ASLRQREGMASiAVSSLEAELNRTKSEIALVQAKEKEAREKMVELPKQLQQAAQEAEE 395
PRK12704 PRK12704
phosphodiesterase; Provisional
1109-1247 4.50e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 45.15  E-value: 4.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1109 IEELKIQLAKKEEELQAalargdEEAVQKNNALKVIRELQAQ--IAELQEDLESE-KASRNKAEKQKRDLSEELEALKTE 1185
Cdd:PRK12704   28 IAEAKIKEAEEEAKRIL------EEAKKEAEAIKKEALLEAKeeIHKLRNEFEKElRERRNELQKLEKRLLQKEENLDRK 101
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679  1186 LEDTldttaaqqelrTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSE----QLEQAK 1247
Cdd:PRK12704  102 LELL-----------EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERisglTAEEAK 156
MscS_porin pfam12795
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part ...
1009-1224 4.51e-04

Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux.


Pssm-ID: 432790 [Multi-domain]  Cd Length: 238  Bit Score: 43.83  E-value: 4.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1009 AKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAecTSQLAEEEEKAKNLAKLKnkqemmITDLEERLKKEEKTRQELEKAK 1088
Cdd:pfam12795   30 DKIDASKQRAAAYQKALDDAPAELRELRQELA--ALQAKAEAAPKEILASLS------LEELEQRLLQTSAQLQELQNQL 101
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1089 RKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKV-IRELQAQIAELQEDLESEKASRNK 1167
Cdd:pfam12795  102 AQLNSQLIELQTRPERAQQQLSEARQRLQQIRNRLNGPAPPGEPLSEAQRWALQAeLAALKAQIDMLEQELLSNNNRQDL 181
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679   1168 AEKQKRDLSEELEALKTELEdtldttAAQQELRTKREQEVAELKKAIEEETKNHEAQ 1224
Cdd:pfam12795  182 LKARRDLLTLRIQRLEQQLQ------ALQELLNEKRLQEAEQAVAQTEQLAEEAAGD 232
COG5281 COG5281
Phage-related minor tail protein [Mobilome: prophages, transposons];
1015-1375 4.78e-04

Phage-related minor tail protein [Mobilome: prophages, transposons];


Pssm-ID: 227606 [Multi-domain]  Cd Length: 833  Bit Score: 45.40  E-value: 4.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1015 EEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDge 1094
Cdd:COG5281  320 KENMGTLETAWDALADAAKKMWDAVLGIGREDKQAALLAAKLAAEKLARVTAQGALNARLKLAQDDLTQAELNYAAAD-- 397
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1095 ttdlQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRD 1174
Cdd:COG5281  398 ----QAANQEGALNAREDEAEVLSTQEERRDILKNLLADAEKRTARQEELNKALAKAKILQADKAAKAYQEDILQREAQS 473
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1175 LSEELEALKTELEDTLDTTAAQQELRT---------KREQEVAELKKAIEEETKNHEAQIQEIRQrHATALEELSEQLEQ 1245
Cdd:COG5281  474 RGKTAAAERSQEQMTAALKALLAFQQQiadlsgakeKASDQKSLLWKAEEQYALLKEEAKQRQLQ-EQKALLEHKKETLE 552
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1246 AKRFKANLeknkQGLESDNKELAceVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKlqNELDNVSS 1325
Cdd:COG5281  553 YTSQLAEL----LDQQADRFELS--AQAAGSQKERGSDLYREALAQNAAALNKALNELAAYWSALDLLQG--DWKAGALS 624
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 45382679 1326 LLEEAEKKGIKFAKDAASLESQLQD--TQELLQEETRQKLNLSSRIRQLEEE 1375
Cdd:COG5281  625 ALANYRDSATDVASQAAQLFTNAFDgmANNAAKFATTGKLSFKSFTRSVLSD 676
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
1217-1917 5.09e-04

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 45.26  E-value: 5.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1217 ETKNHEAQIQEIRQRHATALEELSEQ---LEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEhKRKKLDAQVQ 1293
Cdd:COG3096  280 ERRVHLDQALEFRRELYTSRQQLAAEqyrHVDMSRELAELNGAEGDLEADYQAASDHLNLVQTALRQQE-KIERYQADLE 358
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1294 ELTAKVTEgerlRVELAEKANKLQneldnvssllEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLE 1373
Cdd:COG3096  359 ELTIRLEE----QNEVVEEANERQ----------EENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALE 424
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1374 EEKNNLQEQQEEEeearKNLEKQMLALQAQLAEAKkkvdddlgtiEGLEENKKKLlkDMESLSQRLEEKA------MAYD 1447
Cdd:COG3096  425 RAKELCHLPDLTA----DSAEEWLETFQAKEEEAT----------EKLLSLEQKM--SMAQAAHSQFEQAyqlvvaIAGE 488
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1448 KLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEK---------NISARYAEERDRAEAEAREKETKALS 1518
Cdd:COG3096  489 LARSEAWDVARELLREGPDQRHLAEQVQPLRMRLSELEQRLRQQQsaerlladfCKRQGKNLDAEELEALHQELEALIES 568
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1519 LARALEEALEAKEEFERQNKQLRADMEDLMS------SKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDa 1592
Cdd:COG3096  569 LSDSVSNAREQRMALRQEQEQLQSRIQSLMQrapvwlAAQNALEQLSEQSGEEFTDSQDVTEYMQQLLEREREATVERD- 647
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1593 klRLEVNMQAMKAQFERdLQARDEQNEEKKRMLVKQ-----VRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEaa 1667
Cdd:COG3096  648 --ELGARKNALDEEIER-LSQPGGSEDQRLNALAERfggvlLSEIYDDVTIEDAPYFSALYGPSRHAIVVPDLSQVKE-- 722
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1668 nkardeaikQLRKLQAQMKDYQRELEEARASRDEIFAqskeSEKKLKGLEAEILQLQEEF-----------AASERARRH 1736
Cdd:COG3096  723 ---------HLEGLTDCPEDLYLIEGDPQSFDDSVFS----VDELEKAVVVKIADRQWRYsrfpeiplfgrAAREQRLES 789
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1737 AEQERDELADEIANSASGKSALldekRRLEARIAQ--LEEELEEEQSNMELLnerfrkttlqVDTLNSELAGERSAAQKS 1814
Cdd:COG3096  790 LHAERDVLSERHATLSFDVQKT----QRLHQAFSRfiGSHLAVAFEADPEAE----------IRQLNSRRNELERALSNH 855
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1815 ENARQQLERQNKELKAKLQELEGSVKSKFKATISTLEAKIAQLEEQLeQEAKERAAANKLVRRTEKKLKEVFMQVEDERR 1894
Cdd:COG3096  856 ENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERL-DEAQEAARFIQQHGNTLSKLEPIASVLQSDPE 934
                        730       740
                 ....*....|....*....|...
gi 45382679 1895 HADQYKEQMEKANARMKQLKRQL 1917
Cdd:COG3096  935 QFEQLKEDYAQAQQMQRQARQQA 957
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
1560-1686 5.20e-04

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 43.89  E-value: 5.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1560 ELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFE-RDLQARDEQNEEKKRMLVKQVRELEAELED 1638
Cdd:COG1579   42 ALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERElRALNIEIQIAKERINSLEDELAELMEEIEK 121
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 45382679 1639 ERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMK 1686
Cdd:COG1579  122 LEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELK 169
PRK11637 PRK11637
AmiB activator; Provisional
1657-1915 6.00e-04

AmiB activator; Provisional


Pssm-ID: 236942 [Multi-domain]  Cd Length: 428  Bit Score: 44.68  E-value: 6.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1657 LKDLEGQIEAANKARDEAIKQLRKLQAQMKdyQRELEEARASRdeifaQSKESEKKLKGLEAEILQLQEEFAASERarRH 1736
Cdd:PRK11637   49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLK--KQEEAISQASR-----KLRETQNTLNQLNKQIDELNASIAKLEQ--QQ 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1737 AEQERDeLADEIANS-----ASGKSALL--DEKRRLEaRIaqleeeleeeQSNMELLNERFRKTTLQVDTLNSELAGERS 1809
Cdd:PRK11637  120 AAQERL-LAAQLDAAfrqgeHTGLQLILsgEESQRGE-RI----------LAYFGYLNQARQETIAELKQTREELAAQKA 187
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1810 AAQKSENARQQLERQNKELKAKLQElegsVKSKFKATISTLEAKIAQLEEQLEQeakeraaanklVRRTEKKLKEVFMQV 1889
Cdd:PRK11637  188 ELEEKQSQQKTLLYEQQAQQQKLEQ----ARNERKKTLTGLESSLQKDQQQLSE-----------LRANESRLRDSIARA 252
                         250       260
                  ....*....|....*....|....*..
gi 45382679  1890 EDE-RRHADQYKEQMEKANARMKQLKR 1915
Cdd:PRK11637  253 EREaKARAEREAREAARVRDKQKQAKR 279
PRK12704 PRK12704
phosphodiesterase; Provisional
1565-1719 6.07e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 44.77  E-value: 6.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1565 KRTLEQQVEEMRTQ----LEELEDELQATEDAKLrLEVNMQAM--KAQFERDLQARDEQNEEKKRMLVKQVRELEAELED 1638
Cdd:PRK12704   26 KKIAEAKIKEAEEEakriLEEAKKEAEAIKKEAL-LEAKEEIHklRNEFEKELRERRNELQKLEKRLLQKEENLDRKLEL 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1639 ERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRE--LEEARA-SRDEIFAQSKESEKKLKg 1715
Cdd:PRK12704  105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEilLEKVEEeARHEAAVLIKEIEEEAK- 183

                  ....
gi 45382679  1716 LEAE 1719
Cdd:PRK12704  184 EEAD 187
PRK09039 PRK09039
peptidoglycan -binding protein;
1671-1836 6.11e-04

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 44.19  E-value: 6.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1671 RDEAIKQLRKLQAQMKDyQRELEEARASrdeifaqskesekklkGLEAEILQLQEEFAASERARRHAEQERDELADEiAN 1750
Cdd:PRK09039   51 KDSALDRLNSQIAELAD-LLSLERQGNQ----------------DLQDSVANLRASLSAAEAERSRLQALLAELAGA-GA 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1751 SASGKSALLDEKRRLEARIAQLEeeleeeQSNMELLNErfrkttlQVDTLNSELAGERSAAQKSENARQQLERQ------ 1824
Cdd:PRK09039  113 AAEGRAGELAQELDSEKQVSARA------LAQVELLNQ-------QIAALRRQLAALEAALDASEKRDRESQAKiadlgr 179
                         170
                  ....*....|....
gi 45382679  1825 --NKELKAKLQELE 1836
Cdd:PRK09039  180 rlNVALAQRVQELN 193
RmuC COG1322
DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and ...
1106-1277 6.42e-04

DNA anti-recombination protein (rearrangement mutator) RmuC [Replication, recombination and repair];


Pssm-ID: 224241 [Multi-domain]  Cd Length: 448  Bit Score: 44.30  E-value: 6.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1106 QAQIEELKIQLAK-KEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESeKASRNKAEKQKRDLSEELEALKT 1184
Cdd:COG1322    2 QAILAILLILLLLvNLAFIRQLLLRLGRLEQMLGELAAVLEQLLLLLAFRAEAEQL-RTFARSLQALNLELIQELNELKA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1185 ELEDTLDTTAAQQEL----RTKREQEVAELKKAIEEETKN-----HEAQIQEIRQRHATALEELSEQLEQ-----AKRFK 1250
Cdd:COG1322   81 RLQQQLLQSREQLQLliesLAQLSSEFQELANEIFEELNRrlaelNQQNLKQLLKPLREVLEKFREQLEQrihesAEERS 160
                        170       180
                 ....*....|....*....|....*..
gi 45382679 1251 ANLEKNKQGLESdNKELACEVKVLQQV 1277
Cdd:COG1322  161 TLLEEIDRLLGE-IQQLAQEAGNLTAA 186
PRK12705 PRK12705
hypothetical protein; Provisional
1040-1183 6.45e-04

hypothetical protein; Provisional


Pssm-ID: 237178 [Multi-domain]  Cd Length: 508  Bit Score: 44.70  E-value: 6.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1040 AECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELqaqiEELKIQLAKK 1119
Cdd:PRK12705   35 AERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKL----DNLENQLEER 110
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1120 EEELQAALARGDEEAVQKNNALKVIRELQAQ------IAELQEDLESEKASRNKAEKQKRDLSEELEALK 1183
Cdd:PRK12705  111 EKALSARELELEELEKQLDNELYRVAGLTPEqarkllLKLLDAELEEEKAQRVKKIEEEADLEAERKAQN 180
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
1108-1276 6.92e-04

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 43.85  E-value: 6.92e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    1108 QIEELKIQLAKKEEELQAALARGDEEavqknnaLKVIRELQAQIAELQEDLESEKASRNKAEKQKRDL-SEELEALKTEL 1186
Cdd:smart00787  141 LLEGLKEGLDENLEGLKEDYKLLMKE-------LELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCdPTELDRAKEKL 213
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    1187 EDTLDTTAAQQELRTKREQEVAELKKAIEEETknheAQIQEIRqrhataleelsEQLEQAKRFkanLEKNKQGLESDNKE 1266
Cdd:smart00787  214 KKLLQEIMIKVKKLEELEEELQELESKIEDLT----NKKSELN-----------TEIAEAEKK---LEQCRGFTFKEIEK 275
                           170
                    ....*....|
gi 45382679    1267 LACEVKVLQQ 1276
Cdd:smart00787  276 LKEQLKLLQS 285
GumC COG3206
Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane ...
1558-1798 7.02e-04

Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225747 [Multi-domain]  Cd Length: 458  Bit Score: 44.36  E-value: 7.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1558 VHELEKSKRTLEQQVEEMRTQLEELEDELQATEdakLRLEVNMQAMKAQFERDLQARDEQneekkrmlvkQVRELEAELE 1637
Cdd:COG3206  183 ADQLEAQLEAFRRASDSLDERLEELRARLQEAE---AQVEDFRAQHGLTDAARGQLLSEQ----------QLSALNTQLQ 249
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1638 DERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQREL-EEARASRDEIFAQSKESEKKLKGL 1716
Cdd:COG3206  250 SARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLsTELGAKHPQLVALEAQLAELRQQI 329
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1717 EAEILQLQEEfAASERARrhAEQERDELADEIANsASGKSALLDEkrrLEARIAQLEEELEEEQSNMELLNERFRKTTLQ 1796
Cdd:COG3206  330 AAELRQILAS-LPNELAL--LEQQEAALEKELAQ-LKGRLSKLPK---LQVQLRELEREAEAARSLYETLLQRYQELSIQ 402

                 ..
gi 45382679 1797 VD 1798
Cdd:COG3206  403 EA 404
PRK12704 PRK12704
phosphodiesterase; Provisional
1043-1219 7.08e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 44.38  E-value: 7.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1043 TSQLAEEEEKAKNLAKLKNKQEmmitdleERLKKEEKT--RQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE 1120
Cdd:PRK12704   30 EAKIKEAEEEAKRILEEAKKEA-------EAIKKEALLeaKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKL 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1121 EELQaalargdeeavQKNNALKvirELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTEledtldtTAAQQ--- 1197
Cdd:PRK12704  103 ELLE-----------KREEELE---KKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE-------EAKEIlle 161
                         170       180
                  ....*....|....*....|..
gi 45382679  1198 ELRTKREQEVAELKKAIEEETK 1219
Cdd:PRK12704  162 KVEEEARHEAAVLIKEIEEEAK 183
APG17 pfam04108
Autophagy protein Apg17; Apg17 is required for activating Apg1 protein kinases.
1078-1354 7.09e-04

Autophagy protein Apg17; Apg17 is required for activating Apg1 protein kinases.


Pssm-ID: 427715 [Multi-domain]  Cd Length: 360  Bit Score: 43.92  E-value: 7.09e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1078 EKTRQELEKAKRKLDgETTD----LQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAE 1153
Cdd:pfam04108   17 TDARSLLEELVVLLA-KIAFlrrgLSVQLANLEKVREGLEKVLNELKKDFKQLLKDLDAALERLEETLDKLRNTPVEPAL 95
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1154 LQE-----------DLESEKASRNKAEKQKRDLSEELEALKTELeDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHE 1222
Cdd:pfam04108   96 PPGeekqktlldfiDEDSVEILRDALKELIDELQAAQESLDSDL-KRFDDDLRDLQKELESLSSPSESISLIPTLLKELE 174
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1223 AQIQEIRQrHATALEELSEQLEQAKR-FKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTE 1301
Cdd:pfam04108  175 SLEEEMAS-LLESLTNHYDQCVTAVKlTEGGRAEMLEVLENDARELDDVVPELQDRLDEMENNYERLQKLLEQKNSLIDE 253
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|...
gi 45382679   1302 GerlrVELAEKANKLQNELDNVSSLLEEAEKkgiKFAKDAASLESQLQDTQEL 1354
Cdd:pfam04108  254 L----LSALQLIAEIQSRLPEYLAALKEFEE---RWEEEKETIEDYLSELEDL 299
fliH PRK06669
flagellar assembly protein H; Validated
1009-1189 7.16e-04

flagellar assembly protein H; Validated


Pssm-ID: 235850 [Multi-domain]  Cd Length: 281  Bit Score: 43.85  E-value: 7.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1009 AKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAEcTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAK 1088
Cdd:PRK06669    2 PKVIFKRSNVINKEKLKTHEIQKYRFKVLSIKE-KERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1089 RKLDGETTDLQDQIAELQAQIEELKIQLAK-KEEELQAALARGDEEAVQKNNAlkvirELQAQIAELQEDLesekasRNK 1167
Cdd:PRK06669   81 EELLKKTDEASSIIEKLQMQIEREQEEWEEeLERLIEEAKAEGYEEGYEKGRE-----EGLEEVRELIEQL------NKI 149
                         170       180
                  ....*....|....*....|..
gi 45382679  1168 AEKQKRDLSEELEALKTELEDT 1189
Cdd:PRK06669  150 IEKLIKKREEILESSEEEIVEL 171
HSP70 pfam00012
Hsp70 protein; Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves ...
1005-1113 7.46e-04

Hsp70 protein; Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.


Pssm-ID: 394970 [Multi-domain]  Cd Length: 598  Bit Score: 44.56  E-value: 7.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1005 VTAEAKIKKMEEEILLledQNSKFLKEKKlmEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKtrQEL 1084
Cdd:pfam00012  480 VSAKDKGTGKEQEITI---EASEGLSDDE--IERMVKDAEEYAEEDKKRKERIEAKNEAEEYVYSLEKSLEEEGD--KVP 552
                           90       100       110
                   ....*....|....*....|....*....|....
gi 45382679   1085 EKAKRKLDGETTDL-----QDQIAELQAQIEELK 1113
Cdd:pfam00012  553 EAEKSKVESAIEWLkdeleGDDKEEIEAKTEELA 586
46 PHA02562
endonuclease subunit; Provisional
1009-1194 7.53e-04

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 44.23  E-value: 7.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1009 AKIKKMEEEILLLEDQ----NSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQEL 1084
Cdd:PHA02562  174 DKIRELNQQIQTLDMKidhiQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP 253
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1085 EKAKRKLDGETTDLQDQIAELQ-----------------------AQIEELKIQLAKKEEELQAALARGDEEAVQKNNAL 1141
Cdd:PHA02562  254 SAALNKLNTAAAKIKSKIEQFQkvikmyekggvcptctqqisegpDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN 333
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679  1142 ---KVIRELQAQIAELQEDLESE-------KASRNKAEKQKRDLSEELEALKTELEDTLDTTA 1194
Cdd:PHA02562  334 eqsKKLLELKNKISTNKQSLITLvdkakkvKAAIEELQAEFVDNAEELAKLQDELDKIVKTKS 396
HlyD pfam00529
HlyD membrane-fusion protein of T1SS; HlyD is a component of the prototypical alpha-haemolysin ...
1043-1205 7.64e-04

HlyD membrane-fusion protein of T1SS; HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD and HlyB are inner-membrane proteins and specific components of the transport apparatus of alpha-haemolysin. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.


Pssm-ID: 425733 [Multi-domain]  Cd Length: 322  Bit Score: 43.95  E-value: 7.64e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1043 TSQLAEEEEKAkNLAKLKNKQEmmitdleeRLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEE 1122
Cdd:pfam00529   55 DYQAALDSAEA-QLAKAQAQVA--------RLQAELDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQID 125
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1123 LQAALARGDEEAVQKNNALkvirELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEAL--KTELEDTLDTTAAQQELR 1200
Cdd:pfam00529  126 LARRRVLAPIGGISRESLV----TAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAEvrSELSGAQLQIAEAEAELK 201

                   ....*
gi 45382679   1201 TKREQ 1205
Cdd:pfam00529  202 LAKLD 206
PspA_IM30 pfam04012
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent ...
1616-1739 7.86e-04

PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.


Pssm-ID: 281941 [Multi-domain]  Cd Length: 218  Bit Score: 43.14  E-value: 7.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1616 EQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIE------------AANKARDEAIKQLRKLQA 1683
Cdd:pfam04012   19 DKAEDPEKMLEQAIRDMQSELGKARQALAQVIARQKQLERKLEEQKEQAKklenkaraaltkGNEELAREALAEIATLEK 98
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679   1684 QMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEilqlQEEFAASERARRHAEQ 1739
Cdd:pfam04012   99 LAEALETQLTQQRSAVEQLRKQLAALETKIQQLKAK----KTALKARLKAAKAQEA 150
CCDC73 pfam15818
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ...
883-1298 8.74e-04

Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.


Pssm-ID: 434960 [Multi-domain]  Cd Length: 1050  Bit Score: 44.49  E-value: 8.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    883 EELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFaeaeemRARLAAKKQELEEilhdlesrv 962
Cdd:pfam15818   14 EELRMRREAETQYEEQIGKIIVETQELKWQKETLQNQKETLAKQHKEAMAVF------KKQLQMKMCALEE--------- 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    963 eeeeernqilqnEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEI---LLLEDQNSKFLKEkklMEDRI 1039
Cdd:pfam15818   79 ------------EKGKYQLATEIKEKEIEGLKETLKALQVSKYSLQKKVSEMEQKVqlhLLAKEDHHKQLNE---IEKYY 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1040 AECTSQLA---EEEEKA-----------KNLAKLKNKQEMMITDLEERLKK-----------------EEKT-----RQE 1083
Cdd:pfam15818  144 ATITGQFGlvkENHEKLeqnvqeaiqlnKRLSALNKKQESEICSLKKELKKvtsdlikskvtcqykmgEENInltikEQK 223
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1084 LEKAKRKLDGEtTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRElQAQIAELQEDLESEKA 1163
Cdd:pfam15818  224 FQELQERLNME-LELNKKINEEITHIQEEKQDIIISFQHMQQLLQQQTQANTEMEAELKALKE-NNQTLERDNELQREKV 301
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1164 SRNKA---------EKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHAt 1234
Cdd:pfam15818  302 KENEEkflnlqnehEKALGTWKKHVEELNGEINEIKNELSSLKETHIKLQEHYNKLCNQKKLEEDKKFQNVPEVNNENS- 380
                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679   1235 alEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAK 1298
Cdd:pfam15818  381 --EMSTEKSENIIIQKYNSGQEIREENTKSFCSDTEYREKEKKKGPPVEEIIIEDLQVLEKSFK 442
YqiK COG2268
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
996-1209 9.17e-04

Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];


Pssm-ID: 225177 [Multi-domain]  Cd Length: 548  Bit Score: 44.05  E-value: 9.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  996 ARQKLQLEKVTAEAKIKKMEEEILLLEDqnskfLKEKKLMEDRIAECTSQLAEEEEKaknLAKLKNKQEMMITDLEERLK 1075
Cdd:COG2268  272 AETEAEVAAWKAETRREAEQAEILAEQA-----IQEEKAQAEQEVQHAKALEAREMR---VGLIERQKETELEPQERSYF 343
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1076 KEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQ 1155
Cdd:COG2268  344 INAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIK 423
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679 1156 EDLEsekASRNKAEKQ---KRDLSEELEALKTEledtldTTAAQQELRTKREQEVAE 1209
Cdd:COG2268  424 AEAE---AIREKGKAEaeaKRALAEAIQVLGDA------AAAELFKALVQALPEVAE 471
AAA_13 pfam13166
AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA ...
1146-1479 9.27e-04

AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.


Pssm-ID: 433006 [Multi-domain]  Cd Length: 712  Bit Score: 44.28  E-value: 9.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1146 ELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQEL-------------RTKREQEVAELKK 1212
Cdd:pfam13166   93 EIQAKIAKLKKEIDDHEEKLEALTANLQKADKEKEKLEADFLDECWKKIKRKKDsalsealngfryeANFKSRLLREIEK 172
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1213 AI--------EEETKNHEAQIQEIRQRHATALEELSEQLEQAKRfKANLEKNKQGLESDNKELACEVKVLQQVKAESEHK 1284
Cdd:pfam13166  173 DNfnagvlltDEDLKAALETVFGDNKPEIAPLSFDVIDFDALEK-AEILKQKVIGKSSAIAELIKNPDLADWVEEGLELH 251
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1285 RKKLDAQV---QELTAKvtegerLRVELAEKANK-LQNELDNVSSLLEEAEKKGIKFAK--DAASLESQLQDTQELLQEE 1358
Cdd:pfam13166  252 KAHLDTCPfcgQPLPAE------RKAALEAHFDDeFTEFQRRLQKLIEKYESAISSLLAqlPAVSDLASLLSAFELDVED 325
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1359 -TRQKLNLSSRI---RQLEEEKnnlqeqqeeeeeaRKNLEK--QMLALQAQLAEAKKKVDDDLGTIE-------GLEENK 1425
Cdd:pfam13166  326 lKAEAEVLNSQLdglRQALEAK-------------RKEPFKsiELDSVDAKIESIKDLVAAINELIAkhneitdNLEEEK 392
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 45382679   1426 KKLLKDME-----SLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEK 1479
Cdd:pfam13166  393 NKAKKKLWlflveEFKAEIDEYKDAYAGLEKAINSLTKEIKNATAEIKKLRAEIRELEK 451
HCR pfam07111
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ...
1049-1647 9.44e-04

Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.


Pssm-ID: 284517 [Multi-domain]  Cd Length: 749  Bit Score: 44.36  E-value: 9.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1049 EEEKAKNLAKLKNKQEMMITDL----EERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQ 1124
Cdd:pfam07111  135 EEGSQRELEEIQRLHQEQLSSLtqahEEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELE 214
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1125 AALARgdEEAVQKNNALKVIRELQAQIAEL--QEDLESEKASRnkaeKQKRDLSEELEALKTELEDTLDTTAAQQELRTK 1202
Cdd:pfam07111  215 AQVTL--VESLRKYVGEQVPPEVHSQTWELerQELLDTMQHLQ----EDRADLQATVELLQVRVQSLTHMLALQEEELTR 288
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1203 REQEVAELKKaieEETKNHEAQIQEIRQRHATALEELSEQ----LEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVK 1278
Cdd:pfam07111  289 KIQPSDSLEP---EFPKKCRSLLNRWREKVFALMVQLKAQdlehRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKA 365
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1279 AESEhkrkkldaqVQELTAKVTEGERLRVELAEKANKLQneldnvsslLEEAEKKgIKFAKDA-ASLESQLQDTQELLQE 1357
Cdd:pfam07111  366 AEVE---------VERMSAKGLQMELSRAQEARRRQQQQ---------TASAEEQ-LKFVVNAmSSTQIWLETTMTRVEQ 426
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1358 ETRQKLNLSSRIRQLEEEKNNLqeqqeEEEEARKNLEKQMLALQAQLAEAKKKVDDDLGT-IEGLEENKKKLLKDMEsLS 1436
Cdd:pfam07111  427 AVARIPSLSNRLSYAVRKVHTI-----KGLMARKVALAQLRQESCPPPPPAPPVDADLSLeLEQLREERNRLDAELQ-LS 500
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1437 QRL--EEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKkfdqmlaeekniSARYAEERDRAEAEAREKET 1514
Cdd:pfam07111  501 AHLiqQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLE------------VARQGQQESTEEAASLRQEL 568
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1515 KALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQvEEMRTQLEELEDELQATEDAKL 1594
Cdd:pfam07111  569 TQQQEIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQE-KERNQELRRLQDEARKEEGQRL 647
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|...
gi 45382679   1595 rlevnmqamkaqferdlqARDEQNEEKKRMLVKQVRELEAELEDERKQRALAV 1647
Cdd:pfam07111  648 ------------------ARRVQELERDKNLMLATLQQEGLLSRYKQQRLLAV 682
PRK12704 PRK12704
phosphodiesterase; Provisional
1686-1884 9.72e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 44.00  E-value: 9.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1686 KDYQRELEEARASRDEIFAQSKESEKKLKglEAEILQLQEEFaasERARRHAEQERDELADEIAnsasgksalldekrRL 1765
Cdd:PRK12704   27 KIAEAKIKEAEEEAKRILEEAKKEAEAIK--KEALLEAKEEI---HKLRNEFEKELRERRNELQ--------------KL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1766 EARIAQLEeeleeeqsnmELLNERfrkttlqvdtlNSELAGERSAAQKSENARQQLERQNKELKAKLQELEGSVKSKFK- 1844
Cdd:PRK12704   88 EKRLLQKE----------ENLDRK-----------LELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELEr 146
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 45382679  1845 -ATISTLEAKiAQLEEQLEQEAKERAAanKLVRRTEKKLKE 1884
Cdd:PRK12704  147 iSGLTAEEAK-EILLEKVEEEARHEAA--VLIKEIEEEAKE 184
46 PHA02562
endonuclease subunit; Provisional
1220-1449 1.08e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 43.85  E-value: 1.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1220 NHEAQIQEIRQRHATaleelsEQLEQAKRFKANLEKnKQGLESDNKELacevKVLQQVKAESEHKrkkldAQVQELTAKV 1299
Cdd:PHA02562  180 NQQIQTLDMKIDHIQ------QQIKTYNKNIEEQRK-KNGENIARKQN----KYDELVEEAKTIK-----AEIEELTDEL 243
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1300 TEGERLRVELAEKANKLQNELDNVSSLLEEAEKKgIKFAKDAA---SLESQLQDTQELLQEETRQKLNLSSRIRQLEEEK 1376
Cdd:PHA02562  244 LNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKV-IKMYEKGGvcpTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAI 322
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1377 NNLQEQQEEEEEARK-----------------NLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRL 1439
Cdd:PHA02562  323 DELEEIMDEFNEQSKkllelknkistnkqsliTLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402
                         250
                  ....*....|
gi 45382679  1440 EEKAMAYDKL 1449
Cdd:PHA02562  403 YHRGIVTDLL 412
COG5281 COG5281
Phage-related minor tail protein [Mobilome: prophages, transposons];
1567-1915 1.14e-03

Phage-related minor tail protein [Mobilome: prophages, transposons];


Pssm-ID: 227606 [Multi-domain]  Cd Length: 833  Bit Score: 43.86  E-value: 1.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1567 TLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQferdlqarDEQNEEKKRMLVKQVRELEAeLEDERKQRALA 1646
Cdd:COG5281  273 ALNRQFHYLTAAQLEQIAALQRAGDTAAAAAAAAEAAAAM--------DDRTARVKENMGTLETAWDA-LADAAKKMWDA 343
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1647 VAAKKKMEMDLKDLEGQIEAANKARDEAIKQLrklQAQMKDYQRELEEARAS-RDEIFAQSKESEKKLKGLEAEILQLQE 1725
Cdd:COG5281  344 VLGIGREDKQAALLAAKLAAEKLARVTAQGAL---NARLKLAQDDLTQAELNyAAADQAANQEGALNAREDEAEVLSTQE 420
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1726 EFAASERARRHAEQERDELADEIA--NSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSE 1803
Cdd:COG5281  421 ERRDILKNLLADAEKRTARQEELNkaLAKAKILQADKAAKAYQEDILQREAQSRGKTAAAERSQEQMTAALKALLAFQQQ 500
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1804 LA-----GERSAAQKSENARQQLERQNKELKAKLQELegSVKSKFKATISTLEAKIAQLEEQLEQEAkeraaanklvRRT 1878
Cdd:COG5281  501 IAdlsgaKEKASDQKSLLWKAEEQYALLKEEAKQRQL--QEQKALLEHKKETLEYTSQLAELLDQQA----------DRF 568
                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 45382679 1879 EKKLKEVFMQVEDER-RHADQYKEQMEKANARMKQLKR 1915
Cdd:COG5281  569 ELSAQAAGSQKERGSdLYREALAQNAAALNKALNELAA 606
COG5391 COG5391
Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function ...
997-1241 1.16e-03

Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only];


Pssm-ID: 227680 [Multi-domain]  Cd Length: 524  Bit Score: 43.63  E-value: 1.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  997 RQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKE--KKLMEDRIAECTSQLAEEEEKAKNlaklknkqemmITDLEERL 1074
Cdd:COG5391  306 FEKILIQLESEEESLTRLLESLNNLLLLVLNFSGVfaKRLEQNQNSILNEGVVQAETLRSS-----------LKELLTQL 374
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1075 KKEEKTRQELEKAKRKLdgetTDLQDQIaelQAQIEELKIQLAKKEEElqaalarGDEEAVQKNNALKVIRELQAQIAEL 1154
Cdd:COG5391  375 QDEIKSRESLILTDSNL----EKLTDQN---LEDVEELSRSLRKNSSQ-------RAVVSQQPEGLTSFSKLSYKLRDFV 440
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1155 QEDleSEKASRNKAEKQKRDLSEELEALKTELEDTldTTAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHAT 1234
Cdd:COG5391  441 QEK--SRSKSIESLQQDKEKLEEQLAIAEKDAQEI--NEELKNELKFFFSVRNSDLEKILKSVADSHIEWAEENLEIWKS 516

                 ....*..
gi 45382679 1235 ALEELSE 1241
Cdd:COG5391  517 VKEQLDR 523
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
1607-1926 1.18e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 44.11  E-value: 1.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1607 FERDL-QARDEQNEEKKRmLVKQVRELEAELEDERK---------------QRALAVAAK-KKMEMDLKDLEGQIEAANK 1669
Cdd:COG3096  291 FRRELyTSRQQLAAEQYR-HVDMSRELAELNGAEGDleadyqaasdhlnlvQTALRQQEKiERYQADLEELTIRLEEQNE 369
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1670 ARDEAIKQLRKLQAQMKDYQRELeearasrDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEqerdeLADEIA 1749
Cdd:COG3096  370 VVEEANERQEENEARAEAAELEV-------DELKSQLADYQQALDVQQTRAIQYQQAIAALERAKELCH-----LPDLTA 437
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1750 NSASgksALLDEKRRLEARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAgeRSAAQKSEnarQQLERQNKELK 1829
Cdd:COG3096  438 DSAE---EWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELA--RSEAWDVA---RELLREGPDQR 509
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1830 AKLQElegsvkskfkatISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLKEVFMQVEDERRHADQYKEQMEKANAR 1909
Cdd:COG3096  510 HLAEQ------------VQPLRMRLSELEQRLRQQQSAERLLADFCKRQGKNLDAEELEALHQELEALIESLSDSVSNAR 577
                        330       340
                 ....*....|....*....|..
gi 45382679 1910 -----MKQLKRQLEEAEEEATR 1926
Cdd:COG3096  578 eqrmaLRQEQEQLQSRIQSLMQ 599
WEMBL pfam05701
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ...
1570-1959 1.23e-03

Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".


Pssm-ID: 428594 [Multi-domain]  Cd Length: 562  Bit Score: 43.86  E-value: 1.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1570 QQVEEMRTQ-LEELEDELQATEDAKLRLEvnmqamKAQFErDLQARdeQNEEKKRMLVKQVRE---------LEAELEDE 1639
Cdd:pfam05701   59 EAAEAAKAQvLEELESTKRLIEELKLNLE------RAQTE-EAQAK--QDSELAKLRVEEMEQgiadeasvaAKAQLEVA 129
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1640 RKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRklqaqmkdyqreleearasrdEIFAQSKESEKKLKGLEAE 1719
Cdd:pfam05701  130 KARHAAAVAELKSVKEELESLRKEYASLVSERDIAIKRAE---------------------EAVSASKEIEKTVEELTIE 188
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1720 ILQLQEEFAASERARRHAEQERDELA-----DEIANSASGKSALlDEKRRLEARIAQLEEELEEEQSNMELL-NERFRKT 1793
Cdd:pfam05701  189 LIATKESLESAHAAHLEAEEHRIGAAlareqDKLNWEKELKQAE-EELQRLNQQLLSAKDLKSKLETASALLlDLKAELA 267
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1794 TLQVDTLNSELAGERSAAQKSENARQQLERQNKELkaklQELEGSVKsKFKATISTLEAKIAQLEEQLEQEAKERAAank 1873
Cdd:pfam05701  268 AYMESKLKEEADGEGNEKKTSTSIQAALASAKKEL----EEVKANIE-KAKDEVNCLRVAAASLRSELEKEKAELAS--- 339
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1874 lVRRTEKKLKEVFMQVEDERRHADQ----YKEQMEKANARMKQLKRQLEEAEEEATRANASRRKLQRELDDATEANEGLS 1949
Cdd:pfam05701  340 -LRQREGMASIAVSSLEAELNRTKSeialVQAKEKEAREKMVELPKQLQQAAQEAEEAKSLAQAAREELRKAKEEAEQAK 418
                          410
                   ....*....|
gi 45382679   1950 REVSTLKNRL 1959
Cdd:pfam05701  419 AAASTVESRL 428
EzrA COG4477
Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome ...
894-1331 1.26e-03

Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 226883 [Multi-domain]  Cd Length: 570  Bit Score: 43.52  E-value: 1.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  894 KVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEA----EEMRARLAAKKQELEEILHDLesrveeeeern 969
Cdd:COG4477  101 KAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVlelyEELRRDVLANRHQYGEAAPEL----------- 169
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  970 qilqnekkkmqghiqdleeqldeeegarqklqlekvtaEAKIKKMEEEILLLEDQNSKflkekklmEDRIaECTSQLAEE 1049
Cdd:COG4477  170 --------------------------------------EKKLENIEEELSQFVELTSS--------GDYI-EAREVLEEA 202
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1050 EEKAKNLAKLKNKQEMMITDLEERLKKEektRQELEKAKRKLDGETTDLQDqiAELQAQIEELKIQLAKKEEELqaalar 1129
Cdd:COG4477  203 EEHMIALRSIMERIPSLLAELQTELPGQ---LQDLKAGYRDMKEEGYHLEH--VNIDSRLERLKEQLVENSELL------ 271
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1130 gdeEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTA--------AQQELRT 1201
Cdd:COG4477  272 ---TQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIErvkesyrlAETELGS 348
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1202 KR--EQEVAELKKAIEEETKNHEAQIQEIRQRHATaLEELSEQLEQAKRFKANLEKNKQGLESDnkELACEVKVLQQVKA 1279
Cdd:COG4477  349 VRkfEKELKELESVLDEILENIEAQEVAYSELQDN-LEEIEKALTDIEDEQEKVQEHLTSLRKD--ELEARENLERLKSK 425
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679 1280 ESEHKRKKLDAQV-----QELTAKVTEGERLRvELAEKANKLQNELDNVSSLLEEAE 1331
Cdd:COG4477  426 LHEIKRYMEKSNLpglpeTFLSLFFTAGHEIQ-DLMKELSEVPINMEAVSALVDIAT 481
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1267-1556 1.26e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 43.56  E-value: 1.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1267 LACEVKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLES 1346
Cdd:COG4942   22 LSAAVLAAAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1347 QLQDtqeLLQEETRQKLNLSSRIR--QLEEEKNNLQEQQEEEEEARKNLEKQML-ALQAQLAEAKKKVDDDLGTIEGLE- 1422
Cdd:COG4942  102 RLNA---LEVQEREQRRRLAEQLAalQRSGRNPPPALLVSPEDAQRSVRLAIYYgALNPARAERIDALKATLKQLAAVRa 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1423 --ENKKKLLKDMESlSQRLEEKAMAYDKLEKTKNrlqqelddlmvdldhQRQIVSNLEKKQKKFDQMLAEEKNISARYAe 1500
Cdd:COG4942  179 eiAAEQAELTTLLS-EQRAQQAKLAQLLEERKKT---------------LAQLNSELSADQKKLEELRANESRLKNEIA- 241
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679 1501 erdRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGK 1556
Cdd:COG4942  242 ---SAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTAPEKMLISSTGGFGA 294
PRK11637 PRK11637
AmiB activator; Provisional
1068-1304 1.32e-03

AmiB activator; Provisional


Pssm-ID: 236942 [Multi-domain]  Cd Length: 428  Bit Score: 43.53  E-value: 1.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1068 TDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE----EELQAALARGDEEAVQ---KNNA 1140
Cdd:PRK11637   71 ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQErllaAQLDAAFRQGEHTGLQlilSGEE 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1141 LKVIRELQAQIAEL----QEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEE 1216
Cdd:PRK11637  151 SQRGERILAYFGYLnqarQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQK 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1217 EtknhEAQIQEIRQRHAtaleELSEQLEQAKR-FKANLEKnkqglesdnkelacEVKVLQQVKAesehkrKKLDAQVQEL 1295
Cdd:PRK11637  231 D----QQQLSELRANES----RLRDSIARAEReAKARAER--------------EAREAARVRD------KQKQAKRKGS 282

                  ....*....
gi 45382679  1296 TAKVTEGER 1304
Cdd:PRK11637  283 TYKPTESER 291
ERM pfam00769
Ezrin/radixin/moesin family; This family of proteins contain a band 4.1 domain (pfam00373), at ...
1202-1408 1.32e-03

Ezrin/radixin/moesin family; This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins.


Pssm-ID: 425860 [Multi-domain]  Cd Length: 247  Bit Score: 42.62  E-value: 1.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1202 KREQEVAELKKAIEEETKNHEAQIQEIRQRhATALEELSEQLEQAKRFkanleknkqgLESDNKELACEVKVLQQVKAES 1281
Cdd:pfam00769    6 REKQELEERLKQYEEETRKAQEELEESEET-AELLEEKLRVAEEEAEL----------LEQKAQEAEEEKERLEESAEME 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1282 EHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQ 1361
Cdd:pfam00769   75 AEEKEQLERELREAQEEVARLEEESERKEEEAERLQEELEEAREEEEEAKEKLLAASTSPSHHHSEESENEDDEEEEESY 154
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 45382679   1362 KLNLSSRIRQLEEEKNNLQEQQEEEEEARKN--LEKQMLALQAQLAEAK 1408
Cdd:pfam00769  155 EGGSAELSNDGDMDQLSDRIEEERVTEAEKNerLQKQLKALKSELAQAR 203
HlyD pfam00529
HlyD membrane-fusion protein of T1SS; HlyD is a component of the prototypical alpha-haemolysin ...
1102-1254 1.34e-03

HlyD membrane-fusion protein of T1SS; HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD and HlyB are inner-membrane proteins and specific components of the transport apparatus of alpha-haemolysin. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.


Pssm-ID: 425733 [Multi-domain]  Cd Length: 322  Bit Score: 43.18  E-value: 1.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1102 IAELQAQIEELKIQLAKkeeeLQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEA 1181
Cdd:pfam00529   53 PTDYQAALDSAEAQLAK----AQAQVARLQAELDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLAR 128
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1182 LKTELED------TLDTT-AAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLE 1254
Cdd:pfam00529  129 RRVLAPIggisreSLVTAgALVAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLE 208
HEC1 COG5185
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ...
1321-1698 1.37e-03

Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227512 [Multi-domain]  Cd Length: 622  Bit Score: 43.43  E-value: 1.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1321 DNVSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKQM--- 1397
Cdd:COG5185  249 DNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSqew 328
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1398 LALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDL-DHQRQIVSN 1476
Cdd:COG5185  329 PGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVkSRKLEAQGI 408
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1477 LEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSlaraleealeakEEFERQNKQLRADMEDLMSSKDDVgk 1556
Cdd:COG5185  409 FKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLF------------PKGSGINESIKKSILELNDEIQER-- 474
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1557 nVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAEL 1636
Cdd:COG5185  475 -IKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSI 553
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1637 --EDERKQRA------LAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAqmkDYQRELEEARAS 1698
Cdd:COG5185  554 ldAEQLVQSTeikldeLKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSLEDLEN---ELGKVIEELRNL 620
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
1024-1854 1.39e-03

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 43.89  E-value: 1.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1024 QNSKFLKEKKLMEDRIAECTSQLAEEEekaknLAKLKNK-----QEMMITDLEERLKkeektrqeLEKAKRKLDGETTDL 1098
Cdd:TIGR01612  646 QVPEHLKNKDKIYSTIKSELSKIYEDD-----IDALYNElssivKENAIDNTEDKAK--------LDDLKSKIDKEYDKI 712
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1099 QDQiaelqaQIEELKIQLAKKEEelqaalargdeeavQKNNALKVIRELQAQI-AELQEDLESEKASRNKAEKQkrdLSE 1177
Cdd:TIGR01612  713 QNM------ETATVELHLSNIEN--------------KKNELLDIIVEIKKHIhGEINKDLNKILEDFKNKEKE---LSN 769
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1178 ELEALKTELEDTLDTTAAQQELRTKREQEVAeLKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFK------- 1250
Cdd:TIGR01612  770 KINDYAKEKDELNKYKSKISEIKNHYNDQIN-IDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKddflnkv 848
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1251 ---ANLEKN-KQGLESDNKELAcevKVLQQVKAESEhkrkklDAQVQELTAKVTEGERLrveLAEKANKLQNELDNVSSL 1326
Cdd:TIGR01612  849 dkfINFENNcKEKIDSEHEQFA---ELTNKIKAEIS------DDKLNDYEKKFNDSKSL---INEINKSIEEEYQNINTL 916
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1327 LEEAEKkgIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNNlqeqQEEEEEARKNLEKQMLALQAQLAE 1406
Cdd:TIGR01612  917 KKVDEY--IKICENTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKD----KFDNTLIDKINELDKAFKDASLND 990
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1407 AKKKVDDDLGTIEGLEENKKKLLKDMesLSQRLEEKamaydklEKTKNRLQQELDDLmvdldhqRQIVSNLEKKQKKFDQ 1486
Cdd:TIGR01612  991 YEAKNNELIKYFNDLKANLGKNKENM--LYHQFDEK-------EKATNDIEQKIEDA-------NKNIPNIEIAIHTSIY 1054
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1487 MLAEE------KNISARYAEERDRAEA------EAREKetkaLSLARALEEALEAKEEFERQNKQLRADMEDLmssKDDV 1554
Cdd:TIGR01612 1055 NIIDEiekeigKNIELLNKEILEEAEInitnfnEIKEK----LKHYNFDDFGKEENIKYADEINKIKDDIKNL---DQKI 1127
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1555 GKNVHELEKSKRTLEQQVEEMRTQLEELEDELQAT---EDAKlRLEVNMQAMKAQFERDLQARDEQNEekkrmLVKQVRE 1631
Cdd:TIGR01612 1128 DHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAisnDDPE-EIEKKIENIVTKIDKKKNIYDEIKK-----LLNEIAE 1201
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1632 LEAELEDERKQRALAVAAKKKMEmdlKDLEGQIEAANKARDEAIKQlrkLQAQMKDYqreleearasrDEIFAQSKESEK 1711
Cdd:TIGR01612 1202 IEKDKTSLEEVKGINLSYGKNLG---KLFLEKIDEEKKKSEHMIKA---MEAYIEDL-----------DEIKEKSPEIEN 1264
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1712 KLkGLEAEILQLQEEFAAS-ERARRH--AEQERDELADEIANSA-------SGKSALLDEKRRLEARIAQleeeleeEQS 1781
Cdd:TIGR01612 1265 EM-GIEMDIKAEMETFNIShDDDKDHhiISKKHDENISDIREKSlkiiedfSEESDINDIKKELQKNLLD-------AQK 1336
                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 45382679   1782 NMELLNERFRKTTLQVDTLnsELAGERSAAQKSENARQQLERQNKELKAKLQELEGSVKS-KFKATISTLEAKI 1854
Cdd:TIGR01612 1337 HNSDINLYLNEIANIYNIL--KLNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKiKDDINLEECKSKI 1408
Nup88 pfam10168
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ...
1071-1251 1.40e-03

Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumor cells.


Pssm-ID: 431106  Cd Length: 713  Bit Score: 43.50  E-value: 1.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1071 EERLKKEEKTRQELEKAKRKLDGETtdlQDQIAELQAQIEELKI------QLAKKEEELQaalargDEEAVQKNNALKVI 1144
Cdd:pfam10168  546 EEYLKKHDLAREEIQKRVKLLKLQK---EQQLQELQSLEEERKSlseraeKLAEKYEEIK------DKQEKLMRRCKKVL 616
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1145 RELQAQIAELQEdlesekasrnkaekQKRDLSEELEALKTELEdTLDttAAQQELRTKREQEVAELKKAIEEETKN---- 1220
Cdd:pfam10168  617 QRLNSQLPVLSD--------------AEREMKKELETINEQLK-HLA--NAIKQAKKKMNYQRYQIAKSQSPRKKSslsl 679
                          170       180       190
                   ....*....|....*....|....*....|....
gi 45382679   1221 ---HEAQIQEIRQRHAtalEELSEQLEQAKRFKA 1251
Cdd:pfam10168  680 sekQRKTIKEILKQLG---SEIDELIKQVKDINK 710
PspA COG1842
Phage shock protein A [Transcription, Signal transduction mechanisms];
1616-1815 1.44e-03

Phage shock protein A [Transcription, Signal transduction mechanisms];


Pssm-ID: 224755 [Multi-domain]  Cd Length: 225  Bit Score: 42.30  E-value: 1.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1616 EQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEMDL-------KDLEGQIEAANKARDEAIkqLRKLQAQMKDY 1688
Cdd:COG1842   20 DKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLeeaqaraEKLEEKAELALQAGNEDL--AREALEEKQSL 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1689 QRELEEARASRDEIFAQSKESEKKLKGLEAEILQL---QEEFAASERARRHAEQERDELADeiANSASGKSALLDEKRRL 1765
Cdd:COG1842   98 EDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELrakKEALKARKAAAKAQEKVNRSLGG--GSSSSAMAAFERMEEKI 175
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 45382679 1766 EARIAQLEEELEEEQSNMELLNERFRKTTLQvDTLNSELAGERSAAQKSE 1815
Cdd:COG1842  176 EEREARAEAAAELAEGSGDDLDKEFAQAGAQ-SAVDSRLAALKARMKGPA 224
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
1264-1698 1.57e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 43.57  E-value: 1.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1264 NKELACEVKVLQQVKAESEHKRKKLDAQVQELTAKVtEGERLRVELAEKANKLqneldnvsslleeaekkgikfakdaas 1343
Cdd:pfam17380  261 NGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKM-EQERLRQEKEEKAREV--------------------------- 312
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1344 lesqlqdtqellqeETRQKLNLSSRIRQLEEEKnnlqeqqeeeeearknlEKQMLALQAQLAEAKKKvdddlgTIEGLEE 1423
Cdd:pfam17380  313 --------------ERRRKLEEAEKARQAEMDR-----------------QAAIYAEQERMAMERER------ELERIRQ 355
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1424 NKKKllKDMESLSQrlEEKAMAYDK---LEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQMLAEEKNISARyae 1500
Cdd:pfam17380  356 EERK--RELERIRQ--EEIAMEISRmreLERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE--- 428
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1501 erdraEAEAREKETKALSLARALEEALEAKEEFERQNKqlradMEDLMSSKDDVGKNVHELEKSKRTlEQQVEEMRTQLE 1580
Cdd:pfam17380  429 -----QEEARQREVRRLEEERAREMERVRLEEQERQQQ-----VERLRQQEEERKRKKLELEKEKRD-RKRAEEQRRKIL 497
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1581 ELEdelqatedaklrLEVNMQAMKaqferdlqardeQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKMEM-DLKD 1659
Cdd:pfam17380  498 EKE------------LEERKQAMI------------EEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMeERRR 553
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|.
gi 45382679   1660 LEGQIEAANKARD--EAIKQLRKLQAQMKDYQRELEEARAS 1698
Cdd:pfam17380  554 IQEQMRKATEERSrlEAMEREREMMRQIVESEKARAEYEAT 594
YhaN COG4717
Uncharacterized protein YhaN, contains AAA domain [Function unknown];
882-1460 1.64e-03

Uncharacterized protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 227061 [Multi-domain]  Cd Length: 984  Bit Score: 43.68  E-value: 1.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  882 EEELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAE-EMRARLAAKKQELEEILHDLES 960
Cdd:COG4717  287 EAEIDALLVRLAELKDLASQLIPAKEAVLQALVRLHQQLSEIKASAFELTETLAGIEaDLRDKEEAAGNGFEAERVHDLR 366
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  961 RveeeeernqiLQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKklmedria 1040
Cdd:COG4717  367 S----------LECMLRYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKI-------- 428
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1041 ECTSQLAEEEEKAKNLAKLKNKQemmitdLEERLKKEEKTRQELEKAKRKldgETTDLQDQIAELQAQIEELKI---QLA 1117
Cdd:COG4717  429 AANSQVIDKEEVCNLYDRRDTAW------QKQRFLREKQTAFERQKTEHT---KIIALRLAGMLLVALSRLLTSlifQII 499
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1118 KKEEELQAALARG---DEEAVQKNNALKVIRELQAQIAELQE----DLESEKASRNKAEKQK-RDLSEELEALKTELEDT 1189
Cdd:COG4717  500 FAVAQIVFLSAEIkssSRAVREEKAAVTDIPEELARLLITDElpelAVDLLVQSRIRQHWQQlRKALDQLEAAYEALEGR 579
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1190 LDT-TAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIR-----QRHATALEELSEQLEQAKR-FKANLEKNKQGLES 1262
Cdd:COG4717  580 FAAaEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKdlkklMQKKAELTHQVARLREEQAaFEERVEGLLAVLEA 659
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1263 DNKELACEVKVLQ-QVKAESEHKRKKLDAQVQELtakVTEGERLRVELAEKANKLQneldnVSSLLEEAEKKGIKFAKDA 1341
Cdd:COG4717  660 QFIDLSTLFCVQRlRVAAELQKEEARLALEGNIE---RTKELNDELRAELELHRKE-----ILDLFDCGTADTEDAFREA 731
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1342 ASLESQLQDTQELLQEETRQKLNLSSRIRQL---EEEKNNLQEQQEEEEEARKNLEKQMLALQAQLAEAKKKvdddlgtI 1418
Cdd:COG4717  732 AREEQQLTQRESRLESLEAQLEGVAAEAYELsasLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQ-------I 804
                        570       580       590       600
                 ....*....|....*....|....*....|....*....|....
gi 45382679 1419 EGLEENKK--KLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQEL 1460
Cdd:COG4717  805 AQLEGGGTvaELRQRRESLKEDLEEKARKWASLRLAVQVLEEAL 848
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
1048-1319 1.64e-03

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 43.40  E-value: 1.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1048 EEEEKAKNLAKLKNKQEmmitdlEERLKKEEKTRQEleKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAAL 1127
Cdd:PRK05035  442 EQEKKKAEEAKARFEAR------QARLEREKAAREA--RHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGAR 513
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1128 ARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKA-----SRNKAEKQkrdlseELEALKTELEDTLDTTAAQQELRTK 1202
Cdd:PRK05035  514 PDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAvaaaiARAKAKKA------AQQAANAEAEEEVDPKKAAVAAAIA 587
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1203 ReqevAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKqgLESDNKELAcevkvlqqVKAESE 1282
Cdd:PRK05035  588 R----AKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPE--EPVDPRKAA--------VAAAIA 653
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 45382679  1283 HKRKKLDAQVQELTAKVTEGERLRVELAE-----KANKLQNE 1319
Cdd:PRK05035  654 RAKARKAAQQQANAEPEEAEDPKKAAVAAaiaraKAKKAAQQ 695
46 PHA02562
endonuclease subunit; Provisional
1098-1336 1.68e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 43.08  E-value: 1.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1098 LQDQIAELQAQIEELKIQLAKKEEELqaalargdeeAVQKNNaLKVIRELQAQ-IAELQEDLESEKASRNKAEKQKRDLS 1176
Cdd:PHA02562  172 NKDKIRELNQQIQTLDMKIDHIQQQI----------KTYNKN-IEEQRKKNGEnIARKQNKYDELVEEAKTIKAEIEELT 240
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1177 EELEALKTELEdtlDTTAAQQELRTKREQ---EVAELKKAIEEETKNHE------------AQIQEIRQRHA-------- 1233
Cdd:PHA02562  241 DELLNLVMDIE---DPSAALNKLNTAAAKiksKIEQFQKVIKMYEKGGVcptctqqisegpDRITKIKDKLKelqhslek 317
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1234 --TALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEhkrkKLDAQVqelTAKVTEGERLRVELAE 1311
Cdd:PHA02562  318 ldTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIE----ELQAEF---VDNAEELAKLQDELDK 390
                         250       260       270
                  ....*....|....*....|....*....|.
gi 45382679  1312 KANKLQN------ELDNVSSLLEEAekkGIK 1336
Cdd:PHA02562  391 IVKTKSElvkekyHRGIVTDLLKDS---GIK 418
GumC COG3206
Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane ...
1091-1412 1.71e-03

Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225747 [Multi-domain]  Cd Length: 458  Bit Score: 43.20  E-value: 1.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1091 LDGETTDLQDQIAELQAQIEELK-----IQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLES-EKAS 1164
Cdd:COG3206   68 LEDGQSGLPNDSSSLETEIEILQsrsvlEKVIDKLKLDDDPEFVGKPLIASFLRLLKDLIGPDPTIFEISYRLDDlLESL 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1165 RNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKAIEEEtknhEAQIQEIRQRhatalEELSEQLE 1244
Cdd:COG3206  148 KVLRAGRSRVIELSYTSNDPKLAAKLANALAQAYLADQLEAQLEAFRRASDSL----DERLEELRAR-----LQEAEAQV 218
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1245 QAKRFKANLE-KNKQGLESDNkELACEVKVLQQVKAESEHKRKKLdAQVQELTAKVTEGERLRVELAEKA-NKLQNELDN 1322
Cdd:COG3206  219 EDFRAQHGLTdAARGQLLSEQ-QLSALNTQLQSARARLAQAEARL-ASLLQLLPLGREAAALREVLESPTiQDLRQQYAQ 296
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1323 VSSLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQklNLSSRIRQLEEEKNNLQEQQEEEEEARKNLEKqMLALQA 1402
Cdd:COG3206  297 VRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQ--ILASLPNELALLEQQEAALEKELAQLKGRLSK-LPKLQV 373
                        330
                 ....*....|
gi 45382679 1403 QLAEAKKKVD 1412
Cdd:COG3206  374 QLRELEREAE 383
YloA COG1293
Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains ...
1008-1172 1.80e-03

Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 224212 [Multi-domain]  Cd Length: 564  Bit Score: 43.15  E-value: 1.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1008 EAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKA 1087
Cdd:COG1293  292 EKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKK 371
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1088 KRKLDGETTDLQDQIAELQAqiEELKIQLAKKeeelqaalargdeeAVQKNNALKVIRELQAQIAELQEDLESEKASRNK 1167
Cdd:COG1293  372 YKKLKGAKVNLDRQLSELKE--AIAYYESAKT--------------ALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKK 435

                 ....*
gi 45382679 1168 AEKQK 1172
Cdd:COG1293  436 EWFEK 440
TOPEUc smart00435
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina ...
1006-1127 1.87e-03

DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras


Pssm-ID: 214661 [Multi-domain]  Cd Length: 391  Bit Score: 42.72  E-value: 1.87e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    1006 TAEAKIKKMEEEILLLEDQnskflkekklmedrIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELE 1085
Cdd:smart00435  274 THEKSMEKLQEKIKALKYQ--------------LKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEE 339
                            90       100       110       120
                    ....*....|....*....|....*....|....*....|..
gi 45382679    1086 KAKRkldgettdlqdQIAELQAQIEELKIQLAKKEEELQAAL 1127
Cdd:smart00435  340 KKKK-----------QIERLEERIEKLEVQATDKEENKTVAL 370
46 PHA02562
endonuclease subunit; Provisional
1561-1765 1.96e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 43.08  E-value: 1.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1561 LEKSK-RTLEQQVEEMRTQLEELEDELQATEDAKLRLEvnmqAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDE 1639
Cdd:PHA02562  171 LNKDKiRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQR----KKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1640 RKQRALAVAAKKKMEMDLKDLEGQIEAANK----------------ARDEAIKQLRKLQAQMKDYQRELEEARASRDE-- 1701
Cdd:PHA02562  247 VMDIEDPSAALNKLNTAAAKIKSKIEQFQKvikmyekggvcptctqQISEGPDRITKIKDKLKELQHSLEKLDTAIDEle 326
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 45382679  1702 -IFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRL 1765
Cdd:PHA02562  327 eIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391
ERM pfam00769
Ezrin/radixin/moesin family; This family of proteins contain a band 4.1 domain (pfam00373), at ...
1390-1590 2.13e-03

Ezrin/radixin/moesin family; This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins.


Pssm-ID: 425860 [Multi-domain]  Cd Length: 247  Bit Score: 41.85  E-value: 2.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1390 RKNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDH 1469
Cdd:pfam00769    8 KQELEERLKQYEEETRKAQEELEESEETAELLEEKLRVAEEEAELLEQKAQEAEEEKERLEESAEMEAEEKEQLERELRE 87
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1470 QRQIVSNL--EKKQKKFDQMLAEEKNISARYAEERDRAE-AEAREKETKALSLARALEEALEAKEEFERQNKQLRADMED 1546
Cdd:pfam00769   88 AQEEVARLeeESERKEEEAERLQEELEEAREEEEEAKEKlLAASTSPSHHHSEESENEDDEEEEESYEGGSAELSNDGDM 167
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 45382679   1547 LMSSKDDVGKNVHELEKSKRtLEQQVEEMRTQLEELEDELQATE 1590
Cdd:pfam00769  168 DQLSDRIEEERVTEAEKNER-LQKQLKALKSELAQARDETKQTQ 210
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
1516-1645 2.17e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 225288 [Multi-domain]  Cd Length: 652  Bit Score: 43.15  E-value: 2.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1516 ALSLARALEEALEAKEEFERQNKQLRADMEDLMsskdDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELqatEDAKLR 1595
Cdd:COG2433  393 ALSKVKEEERPREKEGTEEEERREITVYEKRIK----KLEETVERLEEENSELKRELEELKREIEKLESEL---ERFRRE 465
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 45382679 1596 LEVnmqamKAQFERDLQARDEQNEEKKRMLV---KQVRELEAELEDERKQRAL 1645
Cdd:COG2433  466 VRD-----KVRKDREIRARDRRIERLEKELEekkKRVEELERKLAELRKMRKL 513
Laminin_I pfam06008
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from ...
1107-1332 2.18e-03

Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.


Pssm-ID: 310534 [Multi-domain]  Cd Length: 258  Bit Score: 42.01  E-value: 2.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1107 AQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTEL 1186
Cdd:pfam06008   12 PAPYKINYNLENLTKQLQEYLSPENAHKIQIEILEKELSSLAQETEELQKKATQTLAKAQQVNAESERTLGHAKELAEAI 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1187 EDTLDT-TAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQ-LEQAKRFKANLEKNKQGLESDN 1264
Cdd:pfam06008   92 KNLIDNiKEINEKVATLGENDFALPSSDLSRMLAEAQRMLGEIRSRDFGTQLQNAEAeLKAAQDLLSRIQTWFQSPQEEN 171
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 45382679   1265 KELAcevKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELAEKANKLQNELDNVSSLLEEAEK 1332
Cdd:pfam06008  172 KALA---NALRDSLAEYEAKLSDLRELLREAAAKTRDANRLNLANQANLREFQRKKEEVSEQKNQLEE 236
46 PHA02562
endonuclease subunit; Provisional
919-1122 2.34e-03

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 42.69  E-value: 2.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   919 EKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLEsrveeeeernQILQNEKKKMQGHIQDLEEQLDEEEGARQ 998
Cdd:PHA02562  189 KIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEA----------KTIKAEIEELTDELLNLVMDIEDPSAALN 258
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   999 KLQLEKVTAEAKIKKMEEEILLLEDQN------SKFLKEKKLME---DRIAECTSQLAEEEEKAKNLAKLKN---KQEMM 1066
Cdd:PHA02562  259 KLNTAAAKIKSKIEQFQKVIKMYEKGGvcptctQQISEGPDRITkikDKLKELQHSLEKLDTAIDELEEIMDefnEQSKK 338
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679  1067 ITDLEERLKKEEKTRQ-------ELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEE 1122
Cdd:PHA02562  339 LLELKNKISTNKQSLItlvdkakKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401
DUF3450 pfam11932
Protein of unknown function (DUF3450); This family of proteins are functionally ...
1067-1188 2.45e-03

Protein of unknown function (DUF3450); This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length.


Pssm-ID: 432198 [Multi-domain]  Cd Length: 238  Bit Score: 41.83  E-value: 2.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1067 ITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRE 1146
Cdd:pfam11932   15 LDQALDLAEKAVAAAAQSQKKIDKWDDEKQELLAEYRALKAELESLEVYNRQLERLVASQEQEIASLERQIEEIERTERE 94
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 45382679   1147 LQAQIAELQEDLESEKASR---NKAEKQKRdlseeLEALKTELED 1188
Cdd:pfam11932   95 LVPLMLKMLDRLEQFVALDlpfLLEERQAR-----LARLRELMDD 134
HlyD pfam00529
HlyD membrane-fusion protein of T1SS; HlyD is a component of the prototypical alpha-haemolysin ...
1609-1747 2.49e-03

HlyD membrane-fusion protein of T1SS; HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD and HlyB are inner-membrane proteins and specific components of the transport apparatus of alpha-haemolysin. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.


Pssm-ID: 425733 [Multi-domain]  Cd Length: 322  Bit Score: 42.03  E-value: 2.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1609 RDLQARDEQNEEKKRMLVKQVRELEAELeDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDY 1688
Cdd:pfam00529   54 TDYQAALDSAEAQLAKAQAQVARLQAEL-DRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRVL 132
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679   1689 -------QRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADE 1747
Cdd:pfam00529  133 apiggisRESLVTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEA 198
HOOK pfam05622
HOOK protein; This family consists of several HOOK1, 2 and 3 proteins from different ...
1535-1885 2.52e-03

HOOK protein; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head.


Pssm-ID: 428548 [Multi-domain]  Cd Length: 526  Bit Score: 42.73  E-value: 2.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1535 RQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEE---LEDE---LQATEDAKLRLEVNMQAMKAQFE 1608
Cdd:pfam05622   66 KQLEQLQEENFRLETARDDYRIKCEELEKEVLELQHRNEELTSLAEEaqaLKDEidiLRESSDKVSKLEATVETYKKKLE 145
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1609 --RDLQARDEQNEEKKRMLVKQVRELEAELEDERKQRALAVAAKKKmemdLKDLEGQIEAANKARDEAIKQLRKLQAQMK 1686
Cdd:pfam05622  146 dlGDLRRQVKLLEERNAVYMQNTVSLEEELKKANALRGQLELYKRQ----VQELHGKLSEESKKADKLEFEYKKLEEKLE 221
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1687 DYQRELEEARASRDEIfaqsKESEKKLKgleaeILQLQEEFAASERARRHAEQERDELADEIANSASGKSAL---LDEKR 1763
Cdd:pfam05622  222 ALQKEKERLIIERDTL----RETNEELR-----CAQLQQDELSQADALGSPSSSVDNLAAEILPAEIREKLIrlqHENKM 292
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1764 RLEARIAQLEEELEEEQSNME--------------LLNERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELK 1829
Cdd:pfam05622  293 LRLQQEGSEREKLTELQALLEdanrrkneletqnrLANQRILELQQQVEELQKALQEQGSKAEDSSLLKQKLEEHLEKLH 372
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679   1830 AKLQELEgsvksKFKATISTLEA-------KIAQLEEQLEQEAKERAAANKLVRRTEKKLKEV 1885
Cdd:pfam05622  373 EAQEELQ-----KKKEQLEELEPkvdsnlqKIDELQEALRKKDEDMKAMEERYKKYVEKAKSV 430
NtpI COG1269
Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];
882-1162 2.54e-03

Archaeal/vacuolar-type H+-ATPase subunit I/STV1 [Energy production and conversion];


Pssm-ID: 224188 [Multi-domain]  Cd Length: 660  Bit Score: 42.73  E-value: 2.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  882 EEELQAKDEELMKVKEK----QTKVEAELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEmrarlaaKKQELEEILHD 957
Cdd:COG1269   38 EGEKGLKELEKLKVAEVaqisLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSLEE-------VIKPAEKFSSE 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  958 LESRVEEEEERNQILQNEKKKMQGHIqdleeqldeeegarqkLQLEKV----TAEAKIKKMEEEILLLEDQNSKFLKEKK 1033
Cdd:COG1269  111 VEELTRKLEERLSELDEELEDLEDLL----------------EELEPLayldFDLSLLRGLKFLLVRLGLVRREKLEALV 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1034 LMEDRIAEctsqLAEEEEKAKNlaklknkqEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELK 1113
Cdd:COG1269  175 GVIEDEVA----LYGENVEASV--------VIVVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVIAEIQ 242
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 45382679 1114 IQLAKKEEELQAALARGDEEAVQKNNALkvirELQAQIAELQEDLESEK 1162
Cdd:COG1269  243 DELESLRSELEALAEKIAEELLAVREIL----EIEKALGDVLSKLARTE 287
CCCAP pfam15964
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ...
996-1299 2.56e-03

Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.


Pssm-ID: 435040 [Multi-domain]  Cd Length: 703  Bit Score: 42.59  E-value: 2.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    996 ARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEE-EKAKNLAKLKNK--QEMMITDLEE 1072
Cdd:pfam15964  390 LRKEMKKEREELGATMLALSQNVAQLEAQVEKVTREKNSLVSQLEEAQKQLASQEmDVTKVCGEMRYQlnQTKMKKDEAE 469
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1073 RLKKEEKTR---------QELEKAKRKLDGETTDL-QDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQK---NN 1139
Cdd:pfam15964  470 KEHREYRTKtgrqleikdQEIEKLGLELSESKQRLeQAQQDAARAREECLKLTELLGESEHQLHLTRLEKESIQQsfsNE 549
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1140 ALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQ-QELRTKREQEVAELkkaiEEET 1218
Cdd:pfam15964  550 AKAQALQAQQREQELTQKMQQMEAQHDKTVNEQYSLLTSQNTFIAKLKEECCTLAKKlEEITQKSRSEVEQL----SQEK 625
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1219 KNHEAQIQEIRQRHatalEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELTAK 1298
Cdd:pfam15964  626 EYLQDRLEKLQKRN----EELEEQCVQHGRMHERMKQRLRQLDKHCQATAQQLVQLLSKQNQLFKERQNLTEEVQSLRSQ 701

                   .
gi 45382679   1299 V 1299
Cdd:pfam15964  702 V 702
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
883-980 2.73e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 42.89  E-value: 2.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   883 EELQAKDEEL-MKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQaetELFAEAE-EMRARLAAKKQELEEIL----- 955
Cdd:PRK00409  519 NELIASLEELeRELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEED---KLLEEAEkEAQQAIKEAKKEADEIIkelrq 595
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 45382679   956 -----------HDLESRVEEEEERNQILQNEKKKMQ 980
Cdd:PRK00409  596 lqkggyasvkaHELIEARKRLNKANEKKEKKKKKQK 631
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
1668-1914 2.82e-03

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 42.61  E-value: 2.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1668 NKARDEAIKQLRKLQA-QMKDYQRELEEARASR--------DEIFAQSKESEKKLKGLEAEILQLqeEFAASERARRHAE 1738
Cdd:PRK05771   15 KSYKDEVLEALHELGVvHIEDLKEELSNERLRKlrslltklSEALDKLRSYLPKLNPLREEKKKV--SVKSLEELIKDVE 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1739 QERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEeqsNMELLNERFRKTTLQ-VDTLNSELAGERSAAQKSENA 1817
Cdd:PRK05771   93 EELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNF---DLDLSLLLGFKYVSVfVGTVPEDKLEELKLESDVENV 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1818 -----------------RQQLERQNKELK-AKLQELEGSVKSKFKATISTLEAKIAQLEEQLEqeakeraaanklvrRTE 1879
Cdd:PRK05771  170 eyistdkgyvyvvvvvlKELSDEVEEELKkLGFERLELEEEGTPSELIREIKEELEEIEKERE--------------SLL 235
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 45382679  1880 KKLKEVFMQVEDERRHADQYKEQM-EKANARMKQLK 1914
Cdd:PRK05771  236 EELKELAKKYLEELLALYEYLEIElERAEALSKFLK 271
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
1448-1651 3.27e-03

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 380155 [Multi-domain]  Cd Length: 1848  Bit Score: 42.51  E-value: 3.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1448 KLEKTKNRLQQELDDLmvdLDHqrqiVSNLEKKQKKFDQmLAEEKNISAryaeERDRAEAEAREKETKALSLARALEEAL 1527
Cdd:NF012221 1566 RAEADRQRLEQEKQQQ---LAA----ISGSQSQLESTDQ-NALETNGQA----QRDAILEESRAVTKELTTLAQGLDALD 1633
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1528 EAKEEFERQNKQLRAD-----MEDLMSSKDDVGKNVHE-LEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQ 1601
Cdd:NF012221 1634 SQATYAGESGDQWRNPfagglLDRVQEQLDDAKKISGKqLADAKQRHVDNQQKVKDAVAKSEAGVAQGEQNQANAEQDID 1713
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 45382679  1602 AMKAQFE-RDLQARDEQNEEKKRmlvKQVRELEAELEDERKQRALAVAAKK 1651
Cdd:NF012221 1714 DAKADAEkRKDDALAKQNEAQQA---ESDANAAANDAQSRGEQDASAAENK 1761
RecN COG0497
DNA repair ATPase RecN [Replication, recombination and repair];
912-1164 3.30e-03

DNA repair ATPase RecN [Replication, recombination and repair];


Pssm-ID: 223571 [Multi-domain]  Cd Length: 557  Bit Score: 42.20  E-value: 3.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  912 KHQQLL----EEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEEERN-QI-----LQNEKKKMQG 981
Cdd:COG0497  140 LQRQLLdafaGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNlQPgedeeLEEERKRLSN 219
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  982 HiqdlEEQLDEEEGARQKLQLE--KVTAEAKIKKMEEEILLLEDQNSKFlkekKLMEDRIAECTSQLAEEEEKAKNLAKL 1059
Cdd:COG0497  220 S----EKLAEAIQNALELLSGEddTVSALSLLGRALEALEDLSEYDGKL----SELAELLEEALYELEEASEELRAYLDE 291
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1060 KNKQEMMITDLEERLkkeektrQELEKAKRKLDGETTDLQDQIAELQAQIEELKiQLAKKEEELQAALARGDEEAVQKNN 1139
Cdd:COG0497  292 LEFDPNRLEEVEERL-------FALKSLARKYGVTIEDLLEYLDKIKEELAQLD-NSEESLEALEKEVKKLKAELLEAAE 363
                        250       260       270
                 ....*....|....*....|....*....|.
gi 45382679 1140 ALKVIR-----ELQAQI-AELQEdLESEKAS 1164
Cdd:COG0497  364 ALSAIRkkaakELEKEVtAELKA-LAMEKAR 393
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
1067-1183 3.32e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 41.93  E-value: 3.32e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    1067 ITDLEERLKKEEKTRQELEKAKRKLD-GETTDLQDQIAELQAQIEELKIQLAKKEEELQAAlargdEEAVQKNNALKviR 1145
Cdd:smart00787  177 LRDRKDALEEELRQLKQLEDELEDCDpTELDRAKEKLKKLLQEIMIKVKKLEELEEELQEL-----ESKIEDLTNKK--S 249
                            90       100       110
                    ....*....|....*....|....*....|....*...
gi 45382679    1146 ELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALK 1183
Cdd:smart00787  250 ELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLT 287
MARTX_Nterm NF012221
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ...
997-1213 3.39e-03

MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.


Pssm-ID: 380155 [Multi-domain]  Cd Length: 1848  Bit Score: 42.51  E-value: 3.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   997 RQKLQLEKVTAEAKIKKMEEEillLE--DQNskflkekKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERL 1074
Cdd:NF012221 1571 RQRLEQEKQQQLAAISGSQSQ---LEstDQN-------ALETNGQAQRDAILEESRAVTKELTTLAQGLDALDSQATYAG 1640
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1075 KKEEKTRQELekAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARgDEEAVQKNnalkvirelQAQIAEL 1154
Cdd:NF012221 1641 ESGDQWRNPF--AGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK-SEAGVAQG---------EQNQANA 1708
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1155 QEDLESekaSRNKAEKQKRD-LSEELEALKTELEDTLDTTAAQQelRTKREQEVAELKKA 1213
Cdd:NF012221 1709 EQDIDD---AKADAEKRKDDaLAKQNEAQQAESDANAAANDAQS--RGEQDASAAENKAN 1763
ClyA_Cry6Aa-like cd22656
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ...
1076-1183 3.39e-03

Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.


Pssm-ID: 439154 [Multi-domain]  Cd Length: 309  Bit Score: 41.59  E-value: 3.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1076 KEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALAR--GDEEAVQK-------NNALKVIRE 1146
Cdd:cd22656  104 ADATDDEELEEAKKTIKALLDDLLKEAKKYQDKAAKVVDKLTDFENQTEKDQTAleTLEKALKDlltdeggAIARKEIKD 183
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 45382679 1147 LQAQIAELQEDLESE-KASRNKAEKQKRDLSEELEALK 1183
Cdd:cd22656  184 LQKELEKLNEEYAAKlKAKIDELKALIADDEAKLAAAL 221
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
1551-1686 3.58e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 42.51  E-value: 3.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1551 KDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVR 1630
Cdd:PRK00409  508 KKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEAD 587
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679  1631 ELEAELEDERKQRALAVAAKkkmemDLKDLEGQIEAANKARDEAIKQLRKLQAQMK 1686
Cdd:PRK00409  588 EIIKELRQLQKGGYASVKAH-----ELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1422-1653 3.66e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 42.02  E-value: 3.66e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1422 EENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLmvdlDHQ-RQIVSNLEKKQKKFDQMLAEEKNISARYAE 1500
Cdd:COG4942   37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASL----EAQlIETADDLKKLRKQIADLNARLNALEVQERE 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1501 ERDRAEA---------------------EAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVH 1559
Cdd:COG4942  113 QRRRLAEqlaalqrsgrnpppallvspeDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLS 192
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1560 ELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDE 1639
Cdd:COG4942  193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRT 272
                        250
                 ....*....|....
gi 45382679 1640 RKQRALAVAAKKKM 1653
Cdd:COG4942  273 GETYKPTAPEKMLI 286
TolA COG3064
Membrane protein involved in colicin uptake [Cell wall/membrane/envelope biogenesis];
1008-1195 3.81e-03

Membrane protein involved in colicin uptake [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225606 [Multi-domain]  Cd Length: 387  Bit Score: 41.86  E-value: 3.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1008 EAKIKKMEEEILLLEDQNSKFLKEKKLME-DRIAECTSQLAEEEEKAKN---LAKLKNKQEMMITDLEERLKKEEKTRQE 1083
Cdd:COG3064   71 QSSAKKGEQQRKKKEEQVAEELKPKQAAEqERLKQLEKERLKAQEQQKQaeeAEKQAQLEQKQQEEQARKAAAEQKKKAE 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1084 LEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAAlARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKA 1163
Cdd:COG3064  151 AAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAK-KKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKA 229
                        170       180       190
                 ....*....|....*....|....*....|..
gi 45382679 1164 SRNKAEKQKRDLSEELEALKTELEDTLDTTAA 1195
Cdd:COG3064  230 AAEKKKAAAKAKADKAAAAAKAAERKAAAAAL 261
PRK12704 PRK12704
phosphodiesterase; Provisional
1172-1339 3.81e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.07  E-value: 3.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1172 KRDLSEELEALKTELEDTLDttAAQQELRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKA 1251
Cdd:PRK12704   26 KKIAEAKIKEAEEEAKRILE--EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1252 NLEKNKQGLESDNKELACEVKVLQQVKAESEHKRKKLDAQVQELT------AKVTEGERLRVELAEKANKLQNELDnvss 1325
Cdd:PRK12704  104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISgltaeeAKEILLEKVEEEARHEAAVLIKEIE---- 179
                         170
                  ....*....|....
gi 45382679  1326 llEEAEKKGIKFAK 1339
Cdd:PRK12704  180 --EEAKEEADKKAK 191
ATP-synt_Fo_b cd06503
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex ...
1661-1762 3.81e-03

F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.


Pssm-ID: 349951 [Multi-domain]  Cd Length: 132  Bit Score: 39.34  E-value: 3.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1661 EGQIEAANKARDEAIKQLrklqaqmKDYQRELEEARASRDEIFAQSKESEKKLKglEAEILQLQEEFAAS-ERARRHAEQ 1739
Cdd:cd06503   36 AESLEEAEKAKEEAEELL-------AEYEEKLAEARAEAQEIIEEARKEAEKIK--EEILAEAKEEAERIlEQAKAEIEQ 106
                         90       100
                 ....*....|....*....|...
gi 45382679 1740 ERDELADEIANSASGKSALLDEK 1762
Cdd:cd06503  107 EKEKALAELRKEVADLAVEAAEK 129
COG5283 COG5283
Phage-related tail protein [Mobilome: prophages, transposons];
1391-1758 4.05e-03

Phage-related tail protein [Mobilome: prophages, transposons];


Pssm-ID: 227608 [Multi-domain]  Cd Length: 1213  Bit Score: 42.22  E-value: 4.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1391 KNLEKQMLALQAQLAEAKKKVDDDLGTIEGLEENKKKLLKDMESLSQRLEEKAMAYDKLEKTknrlQQELDDLMVDLDHQ 1470
Cdd:COG5283   32 KDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKA----YQEYNAQYTQAENK 107
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1471 RQIVS-------NLEKKQKKFDQMLAEEKNISARYAEERDRAEAEAREKETKALSlaraleEALEAKEEFERQNKQLRAD 1543
Cdd:COG5283  108 LRSLSgqfgvasEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADA------KVVGLRESFGRQTEALNKQ 181
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1544 MEDLMSSKDDVGKNvheLEKSKRTLEQQVEEMRTQLEELEDELQATEDAK-LRLEVNMQAMKAQfeRDLQARDEQNEEKK 1622
Cdd:COG5283  182 LERTKKVADALTYV---LDEAQQKLSQALSARLERLQESRTQMSQSSGQLgKRLETDKAGAGAL--GLLGAALAGSFAAI 256
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1623 RMLVKQVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEaankardeaikqlrKLQAQMKDYQRELEEARASRdEI 1702
Cdd:COG5283  257 GAAVRRTAQMNGELMDKTKQVKGARDNLGKVTSQGEEMSDAIQ--------------ETAEHIKDSGRELSKAAAIG-AA 321
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 45382679 1703 FAQSKESEKKLKGLEAeILQLQEEFAASERARRHAEQERDELADEIA-----------NSASGKSAL 1758
Cdd:COG5283  322 AAMGVAAGKFPTGQEA-KPTLKEMARVAALTATAFNLPADELNDNLAkwagelkfpasDAISGGSLL 387
Laminin_I pfam06008
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from ...
1674-1917 4.22e-03

Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.


Pssm-ID: 310534 [Multi-domain]  Cd Length: 258  Bit Score: 41.24  E-value: 4.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1674 AIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEE-----------FAASERARRHAEqerd 1742
Cdd:pfam06008   10 ALPAPYKINYNLENLTKQLQEYLSPENAHKIQIEILEKELSSLAQETEELQKKatqtlakaqqvNAESERTLGHAK---- 85
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1743 ELADEIANSASGKSALLDEKRRL-----EARIAQLEEELEEEQSNMELLNERFRKTTLQVDTLnselagERSAAQKSENa 1817
Cdd:pfam06008   86 ELAEAIKNLIDNIKEINEKVATLgendfALPSSDLSRMLAEAQRMLGEIRSRDFGTQLQNAEA------ELKAAQDLLS- 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1818 rqQLERQNKELKAKLQELEGSVKSKfkatISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEKKLKEVFMQVEDERRHAD 1897
Cdd:pfam06008  159 --RIQTWFQSPQEENKALANALRDS----LAEYEAKLSDLRELLREAAAKTRDANRLNLANQANLREFQRKKEEVSEQKN 232
                          250       260
                   ....*....|....*....|
gi 45382679   1898 QYKEQMEKANARMKQLKRQL 1917
Cdd:pfam06008  233 QLEETLKTARDSLDAANLLL 252
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
1498-1747 4.28e-03

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 224259 [Multi-domain]  Cd Length: 294  Bit Score: 41.21  E-value: 4.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1498 YAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRTLeqqvEEMRT 1577
Cdd:COG1340   39 LAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSI----KSLER 114
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1578 QLEELEdELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKkrmlvKQVRELEAELEDERKQRalavaakKKMEMDL 1657
Cdd:COG1340  115 EIERLE-KKQQTSVLTPEEERELVQKIKELRKELEDAKKALEEN-----EKLKELKAEIDELKKKA-------REIHEKI 181
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1658 KDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQ-EEFAASERARRH 1736
Cdd:COG1340  182 QELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRaKEKAAKRREKRE 261
                        250
                 ....*....|.
gi 45382679 1737 AEQERDELADE 1747
Cdd:COG1340  262 ELKERAEEIYE 272
EzrA pfam06160
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ...
1556-1955 5.05e-03

Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation.


Pssm-ID: 428797 [Multi-domain]  Cd Length: 542  Bit Score: 41.76  E-value: 5.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1556 KNVHELEKSKRTLEQQVEEMRTQLEELEDElqateDAKLRLEVNmQAMK--AQFERDLQARDEQNEEKKRMLVKQVRELE 1633
Cdd:pfam06160   86 KALDEIEELLDDIEEDIKQILEELDELLES-----EEKNREEVE-ELKDkyRELRKTLLANRFSYGPAIDELEKQLAEIE 159
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1634 AELE--DERKQRALAVAAKK---KMEMDLKDLEGQIEAA----NKARDEAIKQLRKLQA---QMKDYQRELEEarasrDE 1701
Cdd:pfam06160  160 EEFSqfEELTESGDYLEAREvleKLEEETDALEELMEDIpplyEELKTELPDQLEELKEgyrEMEEEGYALEH-----LN 234
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1702 IFAQSKESEKKLKGLEAEILQLqeEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQS 1781
Cdd:pfam06160  235 VDKEIQQLEEQLEENLALLENL--ELDEAEEALEEIEERIDQLYDLLEKEVDAKKYVEKNLPEIEDYLEHAEEQNKELKE 312
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1782 NMELLNERFrkttlqvdTLNselAGERSAAQKSENARQQLERQNKELKAKLQELEG---SVKSKFK---ATISTLEAKIA 1855
Cdd:pfam06160  313 ELERVQQSY--------TLN---ENELERVRGLEKQLEELEKRYDEIVERLEEKEVaysELQEELEeilEQLEEIEEEQE 381
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1856 QLEEQLEQEAKERAAANKLVRRTEKKLKEVFMQVEdeRRH----ADQYKEQMEKANARMKQLKRQLeeaeeeatraNASR 1931
Cdd:pfam06160  382 EFKESLQSLRKDELEAREKLDEFKLELREIKRLVE--KSNlpglPESYLDYFFDVSDEIEDLADEL----------NEVP 449
                          410       420
                   ....*....|....*....|....*..
gi 45382679   1932 ---RKLQRELDDATEANEGLSREVSTL 1955
Cdd:pfam06160  450 lnmDEVNRLLDEAQDDVDTLYEKTEEL 476
EVC2_like pfam12297
Ellis van Creveld protein 2 like protein; This family of proteins is found in eukaryotes. ...
1575-1836 5.30e-03

Ellis van Creveld protein 2 like protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.


Pssm-ID: 432462 [Multi-domain]  Cd Length: 429  Bit Score: 41.58  E-value: 5.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1575 MRTQLEELEDELQATEDAKLRlEVNMQAMK---AQFERDLQARDEQNEE-KKRMLV---KQVRELEAELEDERKQRALAV 1647
Cdd:pfam12297  145 MYQALENLEIATLIRADADLE-ACRIQIMKdiiAMLLGNLTSRGHLSPQaEKRLSSvfnKQFLAMEGRLQEEYGRKMAAL 223
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1648 AAKKKMEMDlKDLEGQIEAANKARDEAIKQLRKLQaqmkdyQRELEEARASRDEIFAQSKESEKKLKGL--EAEILQLQE 1725
Cdd:pfam12297  224 AAECNLETR-EKMEAQHQKEMAEKEEAEELLQHAS------EQEALECSSLLDKLHKLEQEHLQRSLLLkqEEEFAKARR 296
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1726 EFAASERARRHAEQ--------ERDELADEIANS--------ASGKSALLDE-----KRRLEARIAQLEEELEEEQSNME 1784
Cdd:pfam12297  297 QLAVKRRVELHKIFfeqlkeatRKGELKEEAAKRllhdyskiQDTIEELMDFfqanqRYHLEERFAQREYLVKSLQSLET 376
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 45382679   1785 LLNERFRKTTLQVDTLNSELagERSAAQKSENARQQLERQNKELKAKLQELE 1836
Cdd:pfam12297  377 HISALLNTAATQLTSLIQKL--ERAGYLDEEQMEMLLERAQKEVLSVKQKLD 426
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
1094-1173 5.50e-03

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 41.86  E-value: 5.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1094 ETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKR 1173
Cdd:PRK11448  136 PPEDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERK 215
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
1065-1340 5.78e-03

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 224259 [Multi-domain]  Cd Length: 294  Bit Score: 40.82  E-value: 5.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1065 MMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVI 1144
Cdd:COG1340    6 DKLDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKL 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1145 RELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQ-EVAELKKAIEEETKNHEA 1223
Cdd:COG1340   86 QELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKElEDAKKALEENEKLKELKA 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1224 QIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQglesdnkelacevkvlqqvkaESEHKRKKLDAQVQELTAKVTEGE 1303
Cdd:COG1340  166 EIDELKKKAREIHEKIQELANEAQEYHEEMIKLFE---------------------EADELRKEADELHEEFVELSKKID 224
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 45382679 1304 RLRVELAEKANKLqNELDNVSSLLEEAEKKGIKFAKD 1340
Cdd:COG1340  225 ELHEEFRNLQNEL-RELEKKIKALRAKEKAAKRREKR 260
Crescentin pfam19220
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ...
882-1169 5.82e-03

Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteristic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.


Pssm-ID: 437057 [Multi-domain]  Cd Length: 401  Bit Score: 41.21  E-value: 5.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    882 EEELQAKDEELMKVKEKQTKVEAELEEMERKHQQL---LEEKNILAEQLqaETELFAEAEEMRA------RLAAKKQELE 952
Cdd:pfam19220   75 TRRLSAAEGELEELVARLAKLEAALREAEAAKEELrieLRDKTAQAEAL--ERQLAAETEQNRAleeenkALREEAQAAE 152
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    953 EILHDLESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEIL-----------LL 1021
Cdd:pfam19220  153 KALQRAEGELATARERLALLEQENRRLQALSEEQAAELAELTRRLAELETQLDATRARLRALEGQLAaeqaereraeaQL 232
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1022 EDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEkakRKLDGETTDLQDQ 1101
Cdd:pfam19220  233 EEAVEAHRAERASLRMKLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTLE---RRLAGLEADLERR 309
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1102 IAELQaQIEELKIQLAKKEEELQAALARGD---EEAVQKNNAL------------KVIRELQAQIAELQEDLESEKASRN 1166
Cdd:pfam19220  310 TQQFQ-EMQRARAELEERAEMLTKALAAKDaalERAEERIASLsdriaeltkrfeVERAALEQANRRLKEELQRERAERA 388

                   ...
gi 45382679   1167 KAE 1169
Cdd:pfam19220  389 LAQ 391
BMS1 COG5192
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and ...
1013-1188 5.84e-03

GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis];


Pssm-ID: 227519 [Multi-domain]  Cd Length: 1077  Bit Score: 41.65  E-value: 5.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1013 KMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEE-----EKAKNLAKLKNK-QEMMITDLEErlkKEEKTRQELEk 1086
Cdd:COG5192  525 KSSESDLVVQDEPEDFFDVSKVANESISSNHEKLMESEfeelkKKWSSLAQLKSRfQKDATLDSIE---GEEELIQDDE- 600
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1087 akrklDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAvQKNNALKviRELQAQIaELQEDLESEKASRN 1166
Cdd:COG5192  601 -----KGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETER-EENARKK--EELRGNF-ELEERGDPEKKDVD 671
                        170       180
                 ....*....|....*....|..
gi 45382679 1167 KAEKQKRDLSEELEALKTELED 1188
Cdd:COG5192  672 WYTEEKRKIEEQLKINRSEFET 693
ClyA_Cry6Aa-like cd22656
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ...
1121-1278 5.94e-03

Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.


Pssm-ID: 439154 [Multi-domain]  Cd Length: 309  Bit Score: 40.82  E-value: 5.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1121 EELQAALARGDEEAVQ--KNNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTtaaqqE 1198
Cdd:cd22656   98 ELIDDLADATDDEELEeaKKTIKALLDDLLKEAKKYQDKAAKVVDKLTDFENQTEKDQTALETLEKALKDLLTD-----E 172
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1199 LRTKREQEVAELKKAIEEETKNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKELACEVKVLQQVK 1278
Cdd:cd22656  173 GGAIARKEIKDLQKELEKLNEEYAAKLKAKIDELKALIADDEAKLAAALRLIADLTAADTDLDNLLALIGPAIPALEKLQ 252
tolA_full TIGR02794
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ...
1006-1231 5.96e-03

TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]


Pssm-ID: 274303 [Multi-domain]  Cd Length: 346  Bit Score: 40.98  E-value: 5.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1006 TAEAKIKKMEEEILLLEDQNSKFLKEKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQEmmitdlEERLKKEEKTRQELE 1085
Cdd:TIGR02794   57 QQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAE------EKQKQAEEAKAKQAA 130
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1086 KAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKEEELQAALARGDEEAVQKNNALKVIRELQAQIAELQEDLESEKASR 1165
Cdd:TIGR02794  131 EAKAKAEAEAERKAKEEAAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKAEAEAKAKAEEAKAKAEAAKAKAAAEAA 210
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 45382679   1166 NKAEKQKRdLSEELEALKTELEDTLDTTAAQQELRTKREQEVAElKKAIEEETKNHEAQIQEIRQR 1231
Cdd:TIGR02794  211 AKAEAEAA-AAAAAEAERKADEAELGDIFGLASGSNAEKQGGAR-GAAAGSEVDKYAAIIQQAIQQ 274
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
884-1182 6.52e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 41.80  E-value: 6.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  884 ELQAKDEELMKVKEKQTKVEAELEE-------MERKHQQLLEEKNILAEQLQAEtELFAEAEEMRARLAAKKQELEEILH 956
Cdd:COG3096  294 ELYTSRQQLAAEQYRHVDMSRELAElngaegdLEADYQAASDHLNLVQTALRQQ-EKIERYQADLEELTIRLEEQNEVVE 372
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  957 DLESRVEEEEERNQILQNEKKKM--------------QGHIQDLEEQLDEEEGARQKLQLEKVTAE----------AKIK 1012
Cdd:COG3096  373 EANERQEENEARAEAAELEVDELksqladyqqaldvqQTRAIQYQQAIAALERAKELCHLPDLTADsaeewletfqAKEE 452
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1013 KMEEEILLLEDQ-------NSKFLKEKKLM--------EDRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKE 1077
Cdd:COG3096  453 EATEKLLSLEQKmsmaqaaHSQFEQAYQLVvaiagelaRSEAWDVARELLREGPDQRHLAEQVQPLRMRLSELEQRLRQQ 532
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1078 EKTRQEL----EKAKRKLDGETtdLQDQIAELQAQIEEL----------KIQLAKKEEELQAALARGDEEA---VQKNNA 1140
Cdd:COG3096  533 QSAERLLadfcKRQGKNLDAEE--LEALHQELEALIESLsdsvsnareqRMALRQEQEQLQSRIQSLMQRApvwLAAQNA 610
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 45382679 1141 LKVIREL--------QAQIAELQEDLESEKA---SRNKAEKQKRDLSEELEAL 1182
Cdd:COG3096  611 LEQLSEQsgeeftdsQDVTEYMQQLLEREREatvERDELGARKNALDEEIERL 663
PRK12704 PRK12704
phosphodiesterase; Provisional
877-1017 6.58e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 41.30  E-value: 6.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   877 QVTRQEEELQAKDEelmkVKEKQTKVEAELEEMERKHQQ----LLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELE 952
Cdd:PRK12704   52 EAIKKEALLEAKEE----IHKLRNEFEKELRERRNELQKlekrLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELE 127
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 45382679   953 EILHDLEsrveeeeernQILQNEKKKMQgHIQDLEEQLdeeegARQKLqLEKVTAEAK------IKKMEEE 1017
Cdd:PRK12704  128 KKEEELE----------ELIEEQLQELE-RISGLTAEE-----AKEIL-LEKVEEEARheaavlIKEIEEE 181
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
891-1373 6.75e-03

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 41.25  E-value: 6.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    891 ELMKVKEKQTKVEAELEEMERKHQqllEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEEERNQ 970
Cdd:pfam05557    3 ELIESKARLSQLQNEKKQMELEHK---RARIELERKASALARQLERESDRNQELQKRIRLLEKREAEAEEALREQAELNR 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679    971 ILqneKKKMQGHIQDLEEQLDEEEGARQ-KLQLEKVTAEAKIKKMEEEILLLEDQNSKF-LKEKKLMEDRIAECTSQLAE 1048
Cdd:pfam05557   80 LK---KKNLEALNKKLNEKESQLADAREvISCLKNELSELRRQIQRQELELSSTNSELEeLQERLDLQKAKAQEAEQLRQ 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1049 EEEKAKNLAKLKNKQemmITDLEERLKKEEKTRQELEKAKRKLdGETTDLQDQIAELQAQIEEL------KIQLAKKEEE 1122
Cdd:pfam05557  157 NLEAQQSSLAEAEQR---IKELEFEIQSQEQDSEIVKNSKSEL-ARIPELERELERLREHNKHLnenienKLLLKEEVED 232
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1123 LQAALARgdeeavqknnalkvIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEEL---EALKTELEDTLDTTAAQQEL 1199
Cdd:pfam05557  233 LKRKLER--------------EEGYREELATLELEKEKLEQELKSWEKLAQDTGLNLrspEDLSRRIEQLQQREITLKEE 298
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1200 RTKREQEVAELKKAI---EEETKNHEAQIQEIRQRhataLEELSEQLE--QAKRFKANLEKN--KQGLESDNKELACE-- 1270
Cdd:pfam05557  299 NSSLTSSARQLEKAQrelEQELAQYLKNIEDLNKK----LKRHKALVRrlQRRVLLLTKERDgmRAILESYDKELTPSny 374
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1271 -----------VKVLQQVKAESEHKRKKLDAQVQELTAKVTEGERLRVELaeKANKLQNELDNVSSLLEEAEkkgikfak 1339
Cdd:pfam05557  375 spqllerieeaEDMTQDMQAHNEEMEAQLSVAEEELGGYKQQATTLEREL--QALRQQESLADPSYSKEEVD-------- 444
                          490       500       510
                   ....*....|....*....|....*....|....
gi 45382679   1340 daaSLESQLQDTQELLQEETRQKLNLSSRIRQLE 1373
Cdd:pfam05557  445 ---SLRRKLETLEAERQRLREQKNELEMELERRC 475
PrfA COG0216
Protein chain release factor A [Translation, ribosomal structure and biogenesis];
1032-1149 7.37e-03

Protein chain release factor A [Translation, ribosomal structure and biogenesis];


Pssm-ID: 223294 [Multi-domain]  Cd Length: 363  Bit Score: 40.66  E-value: 7.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1032 KKLMEDRIAECTSQLAEEEEK------AKNLAKLK--NKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETtdLQDQIA 1103
Cdd:COG0216    2 KPSLLEKLESLLERYEELEALlsdpevISDPDEYRklSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEK--DPEMRE 79
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 45382679 1104 ELQAQIEELKIQLAKKEEELQAALARGDEeavqkNNALKVIRELQA 1149
Cdd:COG0216   80 MAEEEIKELEAKIEELEEELKILLLPKDP-----NDDKNIILEIRA 120
COG4913 COG4913
Uncharacterized protein, contains a C-terminal ATPase domain [Function unknown];
834-1120 7.53e-03

Uncharacterized protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 227250 [Multi-domain]  Cd Length: 1104  Bit Score: 41.55  E-value: 7.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  834 RKAFAKKQQQLSALKILQRncaaylklRHWQWWRVFTKVKPLLQVTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKH 913
Cdd:COG4913  643 QGEYIKLQEQANALAHIQA--------LNFASIDLPSAQRQIAELQARLERLTHTQSDIAIAKAALDAAQTRQKVLERQY 714
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  914 QQLLEEKNILAEQLQAetelfAEAEEMRARLAAKKQELEEILHDLESRVEEEEERNQILQNEKKKMQghiqdleeqldee 993
Cdd:COG4913  715 QQEVTECAGLKKDLKR-----AAMLSRKVHSIAKQGMTGALQALGAAHFPQVAPEQHDDIVDIERIE------------- 776
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  994 egARQKLQLEKVTAEAKIKKMEEEILlledqnskflkekKLMEDRIAECTSQLAEEEekaKNLAKLKNKQEMMITDLEER 1073
Cdd:COG4913  777 --HRRQLQKRIDAVNARLRRLREEII-------------GRMSDAKKEDTAALSEVG---AELDDIPEYLARLQTLTEDA 838
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 45382679 1074 LKKEEKTRQEL--EKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE 1120
Cdd:COG4913  839 LPEFLARFQELlnRSSDDGVTQLLSHLDHERALIEERIEAINDSLRRVD 887
HlyD pfam00529
HlyD membrane-fusion protein of T1SS; HlyD is a component of the prototypical alpha-haemolysin ...
1623-1765 7.60e-03

HlyD membrane-fusion protein of T1SS; HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD and HlyB are inner-membrane proteins and specific components of the transport apparatus of alpha-haemolysin. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.


Pssm-ID: 425733 [Multi-domain]  Cd Length: 322  Bit Score: 40.48  E-value: 7.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1623 RMLVKQVRELEAELEDERKQRALAVAAKKKMEMdlkdLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEAR------ 1696
Cdd:pfam00529   54 TDYQAALDSAEAQLAKAQAQVARLQAELDRLQA----LESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQidlarr 129
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 45382679   1697 ---ASRDEIFAQSKESEKKL-KGLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRL 1765
Cdd:pfam00529  130 rvlAPIGGISRESLVTAGALvAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKL 202
ERM pfam00769
Ezrin/radixin/moesin family; This family of proteins contain a band 4.1 domain (pfam00373), at ...
1671-1771 7.68e-03

Ezrin/radixin/moesin family; This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins.


Pssm-ID: 425860 [Multi-domain]  Cd Length: 247  Bit Score: 40.31  E-value: 7.68e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1671 RDEAIKQLRKLQAQMKDYQRELEEARasrdeifAQSKESEKKLKGLEAEILQLQEEFAASERARRHAEQERDELADEIAN 1750
Cdd:pfam00769    1 REEAEREKQELEERLKQYEEETRKAQ-------EELEESEETAELLEEKLRVAEEEAELLEQKAQEAEEEKERLEESAEM 73
                           90       100
                   ....*....|....*....|.
gi 45382679   1751 SASGKSALLDEKRRLEARIAQ 1771
Cdd:pfam00769   74 EAEEKEQLERELREAQEEVAR 94
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 ...
883-1480 7.85e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Escherichia coli str. K-12 substr. MG1655 [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 225638 [Multi-domain]  Cd Length: 1480  Bit Score: 41.41  E-value: 7.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  883 EELQAKDEE----LMKVKEKQTKVEAELEEMERKHQQLleeKNILAEQLQAET-----ELFAEAEEMRaRLAAKKQELEE 953
Cdd:COG3096  445 ETFQAKEEEatekLLSLEQKMSMAQAAHSQFEQAYQLV---VAIAGELARSEAwdvarELLREGPDQR-HLAEQVQPLRM 520
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  954 ILHDLESRVEEEEERNQILQNEKKKmqgHIQDLEEQLDEEEGARQKLQLEKVTAEAKiKKMEEEILLLEDQNSKFLKEKK 1033
Cdd:COG3096  521 RLSELEQRLRQQQSAERLLADFCKR---QGKNLDAEELEALHQELEALIESLSDSVS-NAREQRMALRQEQEQLQSRIQS 596
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1034 LMEDRIAECTSQLAEEEEKAKNLAKLKNKQEMMiTDLEERLKKEEKT---RQELEKAKRKLDGETTDL------QDQIAE 1104
Cdd:COG3096  597 LMQRAPVWLAAQNALEQLSEQSGEEFTDSQDVT-EYMQQLLEREREAtveRDELGARKNALDEEIERLsqpggsEDQRLN 675
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1105 LQAQ------IEELKIQLAKKEEELQAALARGDEEAVQKNNaLKVIRELQAQIAELQEDL------------------ES 1160
Cdd:COG3096  676 ALAErfggvlLSEIYDDVTIEDAPYFSALYGPSRHAIVVPD-LSQVKEHLEGLTDCPEDLyliegdpqsfddsvfsvdEL 754
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1161 EKASRNK-AEKQKR-------------DLSEELEALKTELEDTLDTTAAQ-------QELRTKREQEVA-ELKKAIEeet 1218
Cdd:COG3096  755 EKAVVVKiADRQWRysrfpeiplfgraAREQRLESLHAERDVLSERHATLsfdvqktQRLHQAFSRFIGsHLAVAFE--- 831
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1219 KNHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQGLESDNKeLACEVKVL--QQVKAESEHKRKKLDaQVQELT 1296
Cdd:COG3096  832 ADPEAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNR-LIPQLNLLadESLADRVEEIRERLD-EAQEAA 909
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1297 AKVTEGERLRVELAEKANKLQNELDNVSSL---LEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRqlE 1373
Cdd:COG3096  910 RFIQQHGNTLSKLEPIASVLQSDPEQFEQLkedYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLN--E 987
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1374 EEKNNLQEQQEEEEEARKNLEKQmlalQAQLAEAKKKvdddLGTIEGLEENKKKLLKDmesLSQRLEEKAMAYDklEKTK 1453
Cdd:COG3096  988 KLRQRLEQAEAERTRAREQLRQH----QAQLSQYNQV----LASLKSSYDTKKELLNE---LQQELQDIGVRAD--SGAE 1054
                        650       660
                 ....*....|....*....|....*..
gi 45382679 1454 NRLQQELDDLMVDLDHQRQIVSNLEKK 1480
Cdd:COG3096 1055 ERARIRRDELHAQLSTNRSRRNQLEKQ 1081
PspA COG1842
Phage shock protein A [Transcription, Signal transduction mechanisms];
1070-1258 7.99e-03

Phage shock protein A [Transcription, Signal transduction mechanisms];


Pssm-ID: 224755 [Multi-domain]  Cd Length: 225  Bit Score: 39.99  E-value: 7.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1070 LEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAE---LQAQIEELKIQLAKKEEELQAALARGDEEAVQKnnALKVIRE 1146
Cdd:COG1842   19 LDKAEDPEKMLEQAIRDMESELAKARQALAQAIARqkqLERKLEEAQARAEKLEEKAELALQAGNEDLARE--ALEEKQS 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1147 LQAQIAELQEDLESEKASRNKAEKQKRDLS---EELEALKTELEDTLDTTAAQQELRTKR----EQEVAELKKAIEEETK 1219
Cdd:COG1842   97 LEDLAKALEAELQQAEEQVEKLKKQLAALEqkiAELRAKKEALKARKAAAKAQEKVNRSLgggsSSSAMAAFERMEEKIE 176
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 45382679 1220 NHEAQIQEIRQRHATALEELSEQLEQAKRFKANLEKNKQ 1258
Cdd:COG1842  177 EREARAEAAAELAEGSGDDLDKEFAQAGAQSAVDSRLAA 215
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
1650-1880 8.84e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 41.19  E-value: 8.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1650 KKKMEMDLKDLEGqieAANKARDEAIKQL---------RKLQAQ-MKDYQRELEE----ARASRDEIFAQSKE-----SE 1710
Cdd:PRK10929   25 EKQITQELEQAKA---AKTPAQAEIVEALqsalnwleeRKGSLErAKQYQQVIDNfpklSAELRQQLNNERDEprsvpPN 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1711 KKLKGLEAEILQLQEEFAasERARRhAEQERDElADEIANSASGKSALLDEKRRL----EARI-AQLEEELEEEQSNMEL 1785
Cdd:PRK10929  102 MSTDALEQEILQVSSQLL--EKSRQ-AQQEQDR-AREISDSLSQLPQQQTEARRQlneiERRLqTLGTPNTPLAQAQLTA 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1786 LNERFRKTTLQVDTLnsELAgersaaQKSENARQQLERQNKEL-KAKLQELEGSvkskfkatistLEAKIAQLEEQLEQE 1864
Cdd:PRK10929  178 LQAESAALKALVDEL--ELA------QLSANNRQELARLRSELaKKRSQQLDAY-----------LQALRNQLNSQRQRE 238
                         250
                  ....*....|....*.
gi 45382679  1865 AkERAaanklVRRTEK 1880
Cdd:PRK10929  239 A-ERA-----LESTEL 248
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
1632-1960 9.16e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 40.64  E-value: 9.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1632 LEAELEDERKQRALAVaakKKMEMDLKDLEGQIEAANKARDEAIKQLRKLQAQMKDYQRELEEARASRDEIfaqskesEK 1711
Cdd:pfam07888   32 LQNRLEECLQERAELL---QAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKVEEL-------EE 101
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1712 KLKGLEAEILQLQEEFAASERARRHAEQERDELADEIANSASGKSALLDEKRRLEARIAQLEEELEEEQSNMELLNERFR 1791
Cdd:pfam07888  102 KYKELSRSGEELAEEKDALLAQRAESEARIRELEEDIKTLTQRVLERETELERMKERVKKAGAQRKEEEAERKQLQAKLQ 181
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1792 KTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLqelegsvkskfkatiSTLEAKIAQLEEQLEQ--EAKERA 1869
Cdd:pfam07888  182 QTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKL---------------TTAHRKEAENEALLEElrSLQERL 246
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   1870 AANKlvrRTEKKLKEVF--MQVEDERRHADQYKEQMEKANARMKQLKRQLEEAEEEATRANaSRRKLQRELDDATEANEG 1947
Cdd:pfam07888  247 NASE---RKVEGLGEELssMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQ-ERETLQQSAEADKDRIEK 322
                          330
                   ....*....|...
gi 45382679   1948 LSREVSTLKNRLR 1960
Cdd:pfam07888  323 LSAELQRLEERLQ 335
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1700-1961 9.23e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.20  E-value: 9.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1700 DEIFAQSKESEKKLKgleaEILQLQEEFAASERA---RRHAEQERDELADEIANSASGKSALLDEKRRLEA------RIA 1770
Cdd:PRK03918  138 DAILESDESREKVVR----QILGLDDYENAYKNLgevIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEvlreinEIS 213
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1771 QLEEELEEEQSNMELLNERFRKTTLQVDTLNSELAGERSAAQKSENARQQLERQNKELKAKLQELEGSVK---------- 1840
Cdd:PRK03918  214 SELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKelkelkekae 293
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1841 ---------SKFKATISTLEAKIAQLEEQLEQEAKERAAANKLVRRTEkKLKEVFMQVEDERRHADQYKEQMEKANARMK 1911
Cdd:PRK03918  294 eyiklsefyEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE-ELKKKLKELEKRLEELEERHELYEEAKAKKE 372
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 45382679  1912 QLKRqleeaeEEATRANASRRKLQRELDDATEANEGLSREVSTLKNRLRR 1961
Cdd:PRK03918  373 ELER------LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGE 416
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
1663-1765 9.59e-03

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 41.09  E-value: 9.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1663 QIEAANKARDEAIKQLRKLQAQMKD-YQRELEEARASRDEIFAQSKESEKKLKGLEAEILQLQEEFAASERARRhaeQER 1741
Cdd:PRK11448  142 NLLHALQQEVLTLKQQLELQAREKAqSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERK---QKR 218
                          90       100
                  ....*....|....*....|....*.
gi 45382679  1742 DELADEIAnsasgKSALLDEK--RRL 1765
Cdd:PRK11448  219 KEITDQAA-----KRLELSEEetRIL 239
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
874-1132 9.59e-03

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 40.70  E-value: 9.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   874 PLLQVTRQEE-ELQAKDEELMKVKEKQTKVEAELEEMERKHQQLLEEKNILAEQLQAETELfAEAEEMrARLAAKKQELE 952
Cdd:PRK05035  426 PLVQYYRQAKaEIRAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKD-AVAAAL-ARVKAKKAAAT 503
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679   953 EILHDLESrvEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARqKLQLEKVTAEAKIKKMEEEILLLEDQNSKFLKEK 1032
Cdd:PRK05035  504 QPIVIKAG--ARPDNSAVIAAREARKAQARARQAEKQAAAAADPK-KAAVAAAIARAKAKKAAQQAANAEAEEEVDPKKA 580
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  1033 KL---MEDRIAECTSQLAEEEEKAKNLAKLKNKQEmMITDLEERLKKEEKTRQELEKAKRKLDgettdlqDQIAELQAQI 1109
Cdd:PRK05035  581 AVaaaIARAKAKKAAQQAASAEPEEQVAEVDPKKA-AVAAAIARAKAKKAEQQANAEPEEPVD-------PRKAAVAAAI 652
                         250       260
                  ....*....|....*....|...
gi 45382679  1110 EELKIQLAKKEEELQAALARGDE 1132
Cdd:PRK05035  653 ARAKARKAAQQQANAEPEEAEDP 675
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
878-1108 9.94e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 225288 [Multi-domain]  Cd Length: 652  Bit Score: 40.84  E-value: 9.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  878 VTRQEEELQAKDEELMKVKEKQTKVEAELEEMERKhqqlLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHD 957
Cdd:COG2433  410 EEEERREITVYEKRIKKLEETVERLEEENSELKRE----LEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIER 485
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679  958 LESRVEEEEERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLE-KVTAEAKIKKMEEEILLLED------QNSKFLK 1030
Cdd:COG2433  486 LEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEaIEEAEEEYGIKEGDVILVEDpsgggaRTAEELI 565
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 45382679 1031 EKKLMEDRIAECTSQLAEEEEKAKNLAKLKNKQ-------EMMITDLEERLKKEEKTRQELEKAKRKldGETTDLQDQIA 1103
Cdd:COG2433  566 DKKPRAIIRGEEMSHAAAEEFFKNEIPVLPEGDvqiirldEFAVVDSEELRRAIEEWKKRFEERERR--QKEEDILRIIE 643

                 ....*
gi 45382679 1104 ELQAQ 1108
Cdd:COG2433  644 EYRRE 648
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH