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Conserved domains on  [gi|50303607|ref|XP_451745|]
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uncharacterized protein KLLA0_B04752g [Kluyveromyces lactis]

Protein Classification

V-type ATPase subunit( domain architecture ID 10488051)

V-type ATPase subunit such as Enterococcus hirae V-type sodium ATPase subunit C that is involved in ATP-driven sodium extrusion, and eukaryotic V-type proton ATPase subunit d that is part of the integral membrane V0 proton pore complex of vacuolar ATPase, which is responsible for acidifying a variety of intracellular compartments in cells and providing the energy required for transport in the vacuolar system

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
vATP-synt_AC39 pfam01992
ATP synthase (C/AC39) subunit; This family includes the AC39 subunit from vacuolar ATP ...
13-340 2.09e-89

ATP synthase (C/AC39) subunit; This family includes the AC39 subunit from vacuolar ATP synthase, and the C subunit from archaebacterial ATP synthase. The family also includes subunit C from the Sodium transporting ATP synthase from Enterococcus hirae.


:

Pssm-ID: 426553  Cd Length: 333  Bit Score: 271.45  E-value: 2.09e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607    13 IEGIVRGYRNGLLNGSQYINLTQCDTLEDLRLQLASTDYGNFLSNVSSdSLTTTVIQERAADRLYQEFQYVRDQSSGATK 92
Cdd:pfam01992   1 LNARVRAMESKLLTEEDYERLLQCESLEEAVRYLKETGYGDFLADEES-PLHRGDIEKALRRELAKTFEKLRRFAPGLSR 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607    93 KFMDFITYGYMIDNVALMITGTIHDRDKAEILGRCHPLGwfeTLPTLTV-----ATDLESLYETVLvDTPLASYFRDCFD 167
Cdd:pfam01992  80 EFLDLYLYRYDIHNLKLLLRGKLSGLDLEELLEFLIPLG---TLSALDLdklieAKDVEELVEALL-GTPYAEALEEALD 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   168 DADELDDLniEIIRNKLYRAYLQDFYDFIStEVDEPAREIMKELLEFEADRRAINISLNSLQSSDVITSDLKRDLLPkLG 247
Cdd:pfam01992 156 ELEETGDL--QLIENALDKAYYEDLYKFCK-KLGGKTAEILREYLGFEIDLRNIKIILRSKKYGKLSPEDIYKLLIP-GG 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   248 KLYPVATEQLAiHGQDFESVRQIVDTvYPYRGIFETGN---------LEDHFYKLEMELCRD-AFTQQFTVSTIWAWMKS 317
Cdd:pfam01992 232 SLSPEELKALA-EAEDVEEVLAALEG-TPYGELLSEALeeltgslsaLERALDNYLLELAKKlARYQPFSIGPVLAYLKL 309
                         330       340
                  ....*....|....*....|....
gi 50303607   318 REQEVRNITWIAECIAQN-QKSKI 340
Cdd:pfam01992 310 KEQEIRNLRIIAEGKRYGlPPEEI 333
 
Name Accession Description Interval E-value
vATP-synt_AC39 pfam01992
ATP synthase (C/AC39) subunit; This family includes the AC39 subunit from vacuolar ATP ...
13-340 2.09e-89

ATP synthase (C/AC39) subunit; This family includes the AC39 subunit from vacuolar ATP synthase, and the C subunit from archaebacterial ATP synthase. The family also includes subunit C from the Sodium transporting ATP synthase from Enterococcus hirae.


Pssm-ID: 426553  Cd Length: 333  Bit Score: 271.45  E-value: 2.09e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607    13 IEGIVRGYRNGLLNGSQYINLTQCDTLEDLRLQLASTDYGNFLSNVSSdSLTTTVIQERAADRLYQEFQYVRDQSSGATK 92
Cdd:pfam01992   1 LNARVRAMESKLLTEEDYERLLQCESLEEAVRYLKETGYGDFLADEES-PLHRGDIEKALRRELAKTFEKLRRFAPGLSR 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607    93 KFMDFITYGYMIDNVALMITGTIHDRDKAEILGRCHPLGwfeTLPTLTV-----ATDLESLYETVLvDTPLASYFRDCFD 167
Cdd:pfam01992  80 EFLDLYLYRYDIHNLKLLLRGKLSGLDLEELLEFLIPLG---TLSALDLdklieAKDVEELVEALL-GTPYAEALEEALD 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   168 DADELDDLniEIIRNKLYRAYLQDFYDFIStEVDEPAREIMKELLEFEADRRAINISLNSLQSSDVITSDLKRDLLPkLG 247
Cdd:pfam01992 156 ELEETGDL--QLIENALDKAYYEDLYKFCK-KLGGKTAEILREYLGFEIDLRNIKIILRSKKYGKLSPEDIYKLLIP-GG 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   248 KLYPVATEQLAiHGQDFESVRQIVDTvYPYRGIFETGN---------LEDHFYKLEMELCRD-AFTQQFTVSTIWAWMKS 317
Cdd:pfam01992 232 SLSPEELKALA-EAEDVEEVLAALEG-TPYGELLSEALeeltgslsaLERALDNYLLELAKKlARYQPFSIGPVLAYLKL 309
                         330       340
                  ....*....|....*....|....
gi 50303607   318 REQEVRNITWIAECIAQN-QKSKI 340
Cdd:pfam01992 310 KEQEIRNLRIIAEGKRYGlPPEEI 333
NtpC COG1527
Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion];
1-347 7.62e-78

Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion];


Pssm-ID: 224444  Cd Length: 346  Bit Score: 242.25  E-value: 7.62e-78
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   1 MEGVFFNVDNGFIegivRGYRNGLLNGSQYINLTQCDTLEDLRLQLASTDYGNFLSNVSSdslTTTVIQERAADR-LYQE 79
Cdd:COG1527   4 MDTAPYAYPNARI----RVMEARLLTDEQYSELLEAESLEEFARVLEETDYKEDLDSLTS---LGPDLLEKALNRkLVDT 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607  80 FQYVRDQSSGATKKFMDFITYGYMIDNVALMITGTIHDrDKAEILGRCHPLGWFETLPTLTVATDLESLYETVLVDTPLA 159
Cdd:COG1527  77 YRLILRISPGSIKKLIDAYLYKWDIENIKTLLRAKLAG-DPEEISDLLIPLGDFETLLTLAEAKTMEEVVETLEGTTYLA 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607 160 SYFRDCFddaDELDDLNIEIIRNKLYRAYLQDFYDFISTEVDEparEIMKELLEFEADRRAINISLNSLQSSdvITSDLK 239
Cdd:COG1527 156 PLEEALR---DYEDTGDIEPLENALDKAYYEDLLRSVNSEKGD---ELLREFLRLEIDRRNIKTALRGKASE--LSEELM 227
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607 240 RDLLPKLGKLYPVATEQLAiHGQDFESVR------QIVDTVYPYRGIFETGN---LEDHFYKLEMELCRDAFTQQ--FTV 308
Cdd:COG1527 228 ESLIPDGGSLDASALRDLA-EAEDILDVLealegtSYGDALSEYREEYEEGGsiaVFEEALRKALLKRAKEFAQYypLSV 306
                       330       340       350       360
                ....*....|....*....|....*....|....*....|
gi 50303607 309 STIWAWMKSREQEVRNITWIAECIAQNQKS-KINNYISVY 347
Cdd:COG1527 307 GPVLAYLLRKEIEVKNLRWIAEGKANGLPReEIKELLVPL 346
PRK01198 PRK01198
V-type ATP synthase subunit C; Provisional
17-342 1.54e-10

V-type ATP synthase subunit C; Provisional


Pssm-ID: 234917  Cd Length: 352  Bit Score: 61.43  E-value: 1.54e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   17 VRGYRNGLLNGSQYINLTQCDTLEDLRLQLASTDYGNFLSNVSSDSLTTTVIqERAADR-LYQEFQYVRDQSSGATKKFM 95
Cdd:PRK01198  18 VRVREAKLLDREKYERLLEMKSLEEIIRFLEETEYKEEIDELGSRYSGPDLI-EKALNRnLAKTYELLLEISPGRLKELV 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   96 DFITYGYMIDNVALMITGTIHDRDKAEILGRCHPLGWF--ETLPTLTVATDLESLyETVLVDTPLASYFRDCFDDADEld 173
Cdd:PRK01198  97 DVYLRKWDIHNIKTLLRGKILGLDAEEIEELLIPAGELdlEKLKELLEAKSVEEI-VKILEGTEYYEVLEEALEDYEE-- 173
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607  174 DLNIEIIRNKLYRAYLQDFYDFISTEVDEpaREIMKELLEFEADRRAINISL---NSLQSSDVITSdlkrdLLPKLGKLY 250
Cdd:PRK01198 174 TGDLQPIENALDKYYYENLLEIASPKDID--EKLLLEYVRTEIDITNIKTLLrlkAQGLSADFIEK-----VLIPGGSLD 246
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607  251 PVATEQLAIhgqdfESVRQIVD----TVYPY------RGIFETGNLedhfYKLEMELcrDAFTQQ----------FTVST 310
Cdd:PRK01198 247 EEKLKELLA-----EDIEELVSalegTKYGDvlsealEEYEETGSL----SVFEKAL--DNYLLEymkklskrypFSVEP 315
                        330       340       350
                 ....*....|....*....|....*....|..
gi 50303607  311 IWAWMKSREQEVRNITWIAeciaqnqKSKINN 342
Cdd:PRK01198 316 ILGYILAKEREVKNLRIIA-------RGKENG 340
AhaC TIGR02923
ATP synthase A1, C subunit; The A1/A0 ATP synthase is homologous to the V-type (V1/V0, ...
17-329 2.23e-10

ATP synthase A1, C subunit; The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG), which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.


Pssm-ID: 274352  Cd Length: 343  Bit Score: 60.92  E-value: 2.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607    17 VRGYRNGLLNGSQYINLTQCDTLEDLRLQLASTDYGNFLSNVSSDSLTTTVIqERAADR-LYQEFQYVRDQSSGATKKFM 95
Cdd:TIGR02923  12 VRAMESRLLKEEDFNELLEMRGTDEIVRFLEETDYKKELDELGSKSYGVDLI-EHALDAnLAKTYEKLFRISPGASRDLI 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607    96 DFITYGYMIDNVALMITGTIHDRDKAEILGRCHPLGWF--ETLPTLTVATDLESLYEtVLVDTPLASYFRDCFDDADELd 173
Cdd:TIGR02923  91 RLYLKKWDVWNIKTLIRAKYANASAEEVEDLLIPAGEFleKRIKELAEAKTIEEIVE-ALEGTPYYGPLQEALAGNGDL- 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   174 dLNIEiirNKLYRAYLQDFYDFISTEVDEPaREIMKELLEFEADRRAINISLN---SLQSSDVITS-------DLKRDLL 243
Cdd:TIGR02923 169 -SPIE---NELDRMYYEKLLKYVGSPSDDE-TKLFTEFIKTEVDIRNLKTLLRlkaAGLSPDEIMPytipggyELDEEKL 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   244 PKLGKLYPVATEQLAIHGQDF-ESVRQIVDTVYPYRGIFETGnLEDHFYKLEMELcrdAFTQQFTVSTIWAWMKSREQEV 322
Cdd:TIGR02923 244 APLAHIESIDEVVSALDGTKYgEDISEVLSEEEKSVAVFERA-LDEYLIKMATKL---SLRYPLSVGPVLGYILKKEREV 319

                  ....*..
gi 50303607   323 RNITWIA 329
Cdd:TIGR02923 320 RNLRAIA 326
 
Name Accession Description Interval E-value
vATP-synt_AC39 pfam01992
ATP synthase (C/AC39) subunit; This family includes the AC39 subunit from vacuolar ATP ...
13-340 2.09e-89

ATP synthase (C/AC39) subunit; This family includes the AC39 subunit from vacuolar ATP synthase, and the C subunit from archaebacterial ATP synthase. The family also includes subunit C from the Sodium transporting ATP synthase from Enterococcus hirae.


Pssm-ID: 426553  Cd Length: 333  Bit Score: 271.45  E-value: 2.09e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607    13 IEGIVRGYRNGLLNGSQYINLTQCDTLEDLRLQLASTDYGNFLSNVSSdSLTTTVIQERAADRLYQEFQYVRDQSSGATK 92
Cdd:pfam01992   1 LNARVRAMESKLLTEEDYERLLQCESLEEAVRYLKETGYGDFLADEES-PLHRGDIEKALRRELAKTFEKLRRFAPGLSR 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607    93 KFMDFITYGYMIDNVALMITGTIHDRDKAEILGRCHPLGwfeTLPTLTV-----ATDLESLYETVLvDTPLASYFRDCFD 167
Cdd:pfam01992  80 EFLDLYLYRYDIHNLKLLLRGKLSGLDLEELLEFLIPLG---TLSALDLdklieAKDVEELVEALL-GTPYAEALEEALD 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   168 DADELDDLniEIIRNKLYRAYLQDFYDFIStEVDEPAREIMKELLEFEADRRAINISLNSLQSSDVITSDLKRDLLPkLG 247
Cdd:pfam01992 156 ELEETGDL--QLIENALDKAYYEDLYKFCK-KLGGKTAEILREYLGFEIDLRNIKIILRSKKYGKLSPEDIYKLLIP-GG 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   248 KLYPVATEQLAiHGQDFESVRQIVDTvYPYRGIFETGN---------LEDHFYKLEMELCRD-AFTQQFTVSTIWAWMKS 317
Cdd:pfam01992 232 SLSPEELKALA-EAEDVEEVLAALEG-TPYGELLSEALeeltgslsaLERALDNYLLELAKKlARYQPFSIGPVLAYLKL 309
                         330       340
                  ....*....|....*....|....
gi 50303607   318 REQEVRNITWIAECIAQN-QKSKI 340
Cdd:pfam01992 310 KEQEIRNLRIIAEGKRYGlPPEEI 333
NtpC COG1527
Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion];
1-347 7.62e-78

Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion];


Pssm-ID: 224444  Cd Length: 346  Bit Score: 242.25  E-value: 7.62e-78
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   1 MEGVFFNVDNGFIegivRGYRNGLLNGSQYINLTQCDTLEDLRLQLASTDYGNFLSNVSSdslTTTVIQERAADR-LYQE 79
Cdd:COG1527   4 MDTAPYAYPNARI----RVMEARLLTDEQYSELLEAESLEEFARVLEETDYKEDLDSLTS---LGPDLLEKALNRkLVDT 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607  80 FQYVRDQSSGATKKFMDFITYGYMIDNVALMITGTIHDrDKAEILGRCHPLGWFETLPTLTVATDLESLYETVLVDTPLA 159
Cdd:COG1527  77 YRLILRISPGSIKKLIDAYLYKWDIENIKTLLRAKLAG-DPEEISDLLIPLGDFETLLTLAEAKTMEEVVETLEGTTYLA 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607 160 SYFRDCFddaDELDDLNIEIIRNKLYRAYLQDFYDFISTEVDEparEIMKELLEFEADRRAINISLNSLQSSdvITSDLK 239
Cdd:COG1527 156 PLEEALR---DYEDTGDIEPLENALDKAYYEDLLRSVNSEKGD---ELLREFLRLEIDRRNIKTALRGKASE--LSEELM 227
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607 240 RDLLPKLGKLYPVATEQLAiHGQDFESVR------QIVDTVYPYRGIFETGN---LEDHFYKLEMELCRDAFTQQ--FTV 308
Cdd:COG1527 228 ESLIPDGGSLDASALRDLA-EAEDILDVLealegtSYGDALSEYREEYEEGGsiaVFEEALRKALLKRAKEFAQYypLSV 306
                       330       340       350       360
                ....*....|....*....|....*....|....*....|
gi 50303607 309 STIWAWMKSREQEVRNITWIAECIAQNQKS-KINNYISVY 347
Cdd:COG1527 307 GPVLAYLLRKEIEVKNLRWIAEGKANGLPReEIKELLVPL 346
PRK01198 PRK01198
V-type ATP synthase subunit C; Provisional
17-342 1.54e-10

V-type ATP synthase subunit C; Provisional


Pssm-ID: 234917  Cd Length: 352  Bit Score: 61.43  E-value: 1.54e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   17 VRGYRNGLLNGSQYINLTQCDTLEDLRLQLASTDYGNFLSNVSSDSLTTTVIqERAADR-LYQEFQYVRDQSSGATKKFM 95
Cdd:PRK01198  18 VRVREAKLLDREKYERLLEMKSLEEIIRFLEETEYKEEIDELGSRYSGPDLI-EKALNRnLAKTYELLLEISPGRLKELV 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   96 DFITYGYMIDNVALMITGTIHDRDKAEILGRCHPLGWF--ETLPTLTVATDLESLyETVLVDTPLASYFRDCFDDADEld 173
Cdd:PRK01198  97 DVYLRKWDIHNIKTLLRGKILGLDAEEIEELLIPAGELdlEKLKELLEAKSVEEI-VKILEGTEYYEVLEEALEDYEE-- 173
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607  174 DLNIEIIRNKLYRAYLQDFYDFISTEVDEpaREIMKELLEFEADRRAINISL---NSLQSSDVITSdlkrdLLPKLGKLY 250
Cdd:PRK01198 174 TGDLQPIENALDKYYYENLLEIASPKDID--EKLLLEYVRTEIDITNIKTLLrlkAQGLSADFIEK-----VLIPGGSLD 246
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607  251 PVATEQLAIhgqdfESVRQIVD----TVYPY------RGIFETGNLedhfYKLEMELcrDAFTQQ----------FTVST 310
Cdd:PRK01198 247 EEKLKELLA-----EDIEELVSalegTKYGDvlsealEEYEETGSL----SVFEKAL--DNYLLEymkklskrypFSVEP 315
                        330       340       350
                 ....*....|....*....|....*....|..
gi 50303607  311 IWAWMKSREQEVRNITWIAeciaqnqKSKINN 342
Cdd:PRK01198 316 ILGYILAKEREVKNLRIIA-------RGKENG 340
AhaC TIGR02923
ATP synthase A1, C subunit; The A1/A0 ATP synthase is homologous to the V-type (V1/V0, ...
17-329 2.23e-10

ATP synthase A1, C subunit; The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG), which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.


Pssm-ID: 274352  Cd Length: 343  Bit Score: 60.92  E-value: 2.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607    17 VRGYRNGLLNGSQYINLTQCDTLEDLRLQLASTDYGNFLSNVSSDSLTTTVIqERAADR-LYQEFQYVRDQSSGATKKFM 95
Cdd:TIGR02923  12 VRAMESRLLKEEDFNELLEMRGTDEIVRFLEETDYKKELDELGSKSYGVDLI-EHALDAnLAKTYEKLFRISPGASRDLI 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607    96 DFITYGYMIDNVALMITGTIHDRDKAEILGRCHPLGWF--ETLPTLTVATDLESLYEtVLVDTPLASYFRDCFDDADELd 173
Cdd:TIGR02923  91 RLYLKKWDVWNIKTLIRAKYANASAEEVEDLLIPAGEFleKRIKELAEAKTIEEIVE-ALEGTPYYGPLQEALAGNGDL- 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   174 dLNIEiirNKLYRAYLQDFYDFISTEVDEPaREIMKELLEFEADRRAINISLN---SLQSSDVITS-------DLKRDLL 243
Cdd:TIGR02923 169 -SPIE---NELDRMYYEKLLKYVGSPSDDE-TKLFTEFIKTEVDIRNLKTLLRlkaAGLSPDEIMPytipggyELDEEKL 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50303607   244 PKLGKLYPVATEQLAIHGQDF-ESVRQIVDTVYPYRGIFETGnLEDHFYKLEMELcrdAFTQQFTVSTIWAWMKSREQEV 322
Cdd:TIGR02923 244 APLAHIESIDEVVSALDGTKYgEDISEVLSEEEKSVAVFERA-LDEYLIKMATKL---SLRYPLSVGPVLGYILKKEREV 319

                  ....*..
gi 50303607   323 RNITWIA 329
Cdd:TIGR02923 320 RNLRAIA 326
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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