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Conserved domains on  [gi|503778552|ref|WP_014012546|]
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MULTISPECIES: 30S ribosomal protein S14 [Thermococcus]

Protein Classification

30S ribosomal protein S14( domain architecture ID 10012590)

30S ribosomal protein S14 type Z is located in the peptidyl transferase center and is involved in the assembly of the 30S ribosome subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rps14P PRK05766
30S ribosomal protein S14P; Reviewed
 5-56 1.09e-19

30S ribosomal protein S14P; Reviewed


:

Pssm-ID: 235598  Cd Length: 52  Bit Score: 73.00  E-value: 1.09e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 503778552  5 DYNKRKPRKFGKGARRCMRCGQYGPIIRIHGLMLCRHCFREIAPKLGFKKYE 56
Cdd:PRK05766  1 KYKPPKKRKYGKGARECQRCGRKQGLIRKYGLYLCRQCFREVAPKLGFKKYS 52
 
Name Accession Description Interval E-value
rps14P PRK05766
30S ribosomal protein S14P; Reviewed
 5-56 1.09e-19

30S ribosomal protein S14P; Reviewed


Pssm-ID: 235598  Cd Length: 52  Bit Score: 73.00  E-value: 1.09e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 503778552  5 DYNKRKPRKFGKGARRCMRCGQYGPIIRIHGLMLCRHCFREIAPKLGFKKYE 56
Cdd:PRK05766  1 KYKPPKKRKYGKGARECQRCGRKQGLIRKYGLYLCRQCFREVAPKLGFKKYS 52
 
Name Accession Description Interval E-value
rps14P PRK05766
30S ribosomal protein S14P; Reviewed
 5-56 1.09e-19

30S ribosomal protein S14P; Reviewed


Pssm-ID: 235598  Cd Length: 52  Bit Score: 73.00  E-value: 1.09e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 503778552  5 DYNKRKPRKFGKGARRCMRCGQYGPIIRIHGLMLCRHCFREIAPKLGFKKYE 56
Cdd:PRK05766  1 KYKPPKKRKYGKGARECQRCGRKQGLIRKYGLYLCRQCFREVAPKLGFKKYS 52
PTZ00218 PTZ00218
40S ribosomal protein S29; Provisional
 9-55 5.02e-11

40S ribosomal protein S29; Provisional


Pssm-ID: 185518  Cd Length: 54  Bit Score: 51.22  E-value: 5.02e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 503778552  9 RKPRKFGKGARRCMRCGQYGPIIRIHGLMLCRHCFREIAPKLGFKKY 55
Cdd:PTZ00218  7 THPRTYGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKY 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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