NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|504893301|ref|WP_015080403|]
View 

MULTISPECIES: tetratricopeptide repeat protein [Nostocales]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1000094)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
252-517 6.93e-40

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 144.76  E-value: 6.93e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 252 LQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIGNYHIAIEAYTQAIRINPHIAINYK 331
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 332 NRADVRSHIGDTQGAIEDYNQAINLNPDYATTqkdrqisrylldkqqqlkqiididphdaigYKNRGHDRVELGDYEGAI 411
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEA------------------------------LYNLGLALLELGRYDEAI 130

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 412 TDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNALLEIADKQGAVEDFHKAANLYWQ 491
Cdd:COG0457  131 EAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKK 210

                        250       260
                 ....*....|....*....|....*.
gi 504893301 492 AGKLAEYKDTQARIIELEIEASLDIL 517
Cdd:COG0457  211 LAILTLAALAELLLLALALLLALRLA 236
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 228-258 5.26e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


:

Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 5.26e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 504893301   228 YLNLGDEYFQKGEYAAAINSYNQALQFNNSD 258
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
252-517 6.93e-40

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 144.76  E-value: 6.93e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 252 LQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIGNYHIAIEAYTQAIRINPHIAINYK 331
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 332 NRADVRSHIGDTQGAIEDYNQAINLNPDYATTqkdrqisrylldkqqqlkqiididphdaigYKNRGHDRVELGDYEGAI 411
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEA------------------------------LYNLGLALLELGRYDEAI 130

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 412 TDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNALLEIADKQGAVEDFHKAANLYWQ 491
Cdd:COG0457  131 EAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKK 210

                        250       260
                 ....*....|....*....|....*.
gi 504893301 492 AGKLAEYKDTQARIIELEIEASLDIL 517
Cdd:COG0457  211 LAILTLAALAELLLLALALLLALRLA 236
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 231-461 3.40e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.59  E-value: 3.40e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  231 LGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIGNYH 310
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYE 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  311 IAIEAYTQAIRINPH----------IAINYKNRADVRSHIGDTQGAIEDYNQAINLnpdYATTQKDrqiSRYLLDKQQQL 380
Cdd:TIGR02917 279 DARETLQDALKSAPEylpalllagaSEYQLGNLEQAYQYLNQILKYAPNSHQARRL---LASIQLR---LGRVDEAIATL 352

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  381 KQIIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVN 460
Cdd:TIGR02917 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432


                  .
gi 504893301  461 A 461
Cdd:TIGR02917 433 A 433
TPR_11 pfam13414
TPR repeat;
232-273 2.63e-12

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 61.33  E-value: 2.63e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 504893301  232 GDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLG 273
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 239-332 2.84e-11

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 62.00  E-value: 2.84e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 239 GEYAAAINSYNQALQFNNSDAD---IYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIGN------- 308
Cdd:PRK02603  49 GEYAEALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEkaeeagd 128

                         90       100       110
                 ....*....|....*....|....*....|.
gi 504893301 309 -------YHIAIEAYTQAIRINPHIAINYKN 332
Cdd:PRK02603 129 qdeaealFDKAAEYWKQAIRLAPNNYIEAQN 159
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 293-325 2.36e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 2.36e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 504893301   293 PQAYNQIGLVHYQIGNYHIAIEAYTQAIRINPH 325
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 228-258 5.26e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 5.26e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 504893301   228 YLNLGDEYFQKGEYAAAINSYNQALQFNNSD 258
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
228-255 1.05e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 1.05e-03
                          10        20
                  ....*....|....*....|....*...
gi 504893301  228 YLNLGDEYFQKGEYAAAINSYNQALQFN 255
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELN 31
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 228-273 9.58e-03

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 37.94  E-value: 9.58e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 504893301 228 YLNLGDEYFQKGEYAAAINSYNQALQF--NNSDAD-IYYKLGLVNYQLG 273
Cdd:COG4105   72 QLMLAYAYYKQGDYEEAIAAADRFIKLypNSPNADyAYYLRGLSYYEQS 120
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 307-403 9.86e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 37.99  E-value: 9.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 307 GNYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDYATtqkdrqiSRYLldkqqQLKQIidI 386
Cdd:cd24142   14 GNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGY-------EKYL-----YLGQL--S 79

                         90
                 ....*....|....*..
gi 504893301 387 DPHDAIGYKNRGHDRVE 403
Cdd:cd24142   80 GGEEALQYYEKGIEILE 96
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
252-517 6.93e-40

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 144.76  E-value: 6.93e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 252 LQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIGNYHIAIEAYTQAIRINPHIAINYK 331
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 332 NRADVRSHIGDTQGAIEDYNQAINLNPDYATTqkdrqisrylldkqqqlkqiididphdaigYKNRGHDRVELGDYEGAI 411
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAEA------------------------------LYNLGLALLELGRYDEAI 130

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 412 TDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNALLEIADKQGAVEDFHKAANLYWQ 491
Cdd:COG0457  131 EAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKK 210

                        250       260
                 ....*....|....*....|....*.
gi 504893301 492 AGKLAEYKDTQARIIELEIEASLDIL 517
Cdd:COG0457  211 LAILTLAALAELLLLALALLLALRLA 236
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
223-492 8.89e-35

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 130.90  E-value: 8.89e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 223 DLTIFYLNLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLV 302
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 303 HYQIGNYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDYATTqkdrqisrylldkqqqlkq 382
Cdd:COG0457   86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA------------------- 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 383 iididphdaigYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVNAY 462
Cdd:COG0457  147 -----------LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215

                        250       260       270
                 ....*....|....*....|....*....|
gi 504893301 463 YNRGNALLEIADKQGAVEDFHKAANLYWQA 492
Cdd:COG0457  216 LAALAELLLLALALLLALRLAALALYQYRA 245
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 221-489 2.49e-32

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 124.84  E-value: 2.49e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 221 PVDLTIFYLNLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIG 300
Cdd:COG2956    4 PVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 301 LVHYQIGNYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDYAttQKDRQISRYLLDK---- 376
Cdd:COG2956   84 QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENA--HAYCELAELYLEQgdyd 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 377 --QQQLKQIIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKM 454
Cdd:COG2956  162 eaIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL 241

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 504893301 455 NfHYVNAYYNRGNALLEIADKQGAVEDFHKAANLY 489
Cdd:COG2956  242 D-PSDDLLLALADLLERKEGLEAALALLERQLRRH 275
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 230-488 1.39e-26

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 113.93  E-value: 1.39e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 230 NLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLV------- 302
Cdd:COG3914    6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAallelaa 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 303 --HYQIGNYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDYATtqkdrqisrylldkqqql 380
Cdd:COG3914   86 llLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE------------------ 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 381 kqiididphdaiGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVN 460
Cdd:COG3914  148 ------------AYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215

                        250       260
                 ....*....|....*....|....*...
gi 504893301 461 AYYNRGNALLEIADKQGAVEDFHKAANL 488
Cdd:COG3914  216 AHSNLLFALRQACDWEVYDRFEELLAAL 243
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
388-488 7.24e-26

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 105.38  E-value: 7.24e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 388 PHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGN 467
Cdd:COG4785   70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGI 149

                         90       100
                 ....*....|....*....|.
gi 504893301 468 ALLEIADKQGAVEDFHKAANL 488
Cdd:COG4785  150 ALYYLGRYELAIADLEKALEL 170
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
281-504 1.11e-24

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 102.30  E-value: 1.11e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 281 NYSQAINININHPQAYNQIGLVHYQIGNYHIAIEAYTQAIR------INPHIAINYKNRADVRSHIGDTQGAIEDYNQAI 354
Cdd:COG4785   21 KAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAEridralALPDLAQLYYERGVAYDSLGDYDLAIADFDQAL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 355 NLNPDYATTqkdrqisrylldkqqqlkqiididphdaigYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNA 434
Cdd:COG4785  101 ELDPDLAEA------------------------------YNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 435 HFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNALLEIaDKQGAVEDFHKAanlyWQAGKLAEYKDTQAR 504
Cdd:COG4785  151 LYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL-DPEKALALLLED----WATAYLLQGDTEEAR 215
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
228-419 5.71e-24

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 99.99  E-value: 5.71e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 228 YLNLGDEYFQKGEYAAAINSYNQAlQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIG 307
Cdd:COG4785   43 DLALALAAAALAAAALAAERIDRA-LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLG 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 308 NYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDYATTQKDRQISRYLLDKQQQLKQIIdid 387
Cdd:COG4785  122 DYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLL--- 198

                        170       180       190
                 ....*....|....*....|....*....|..
gi 504893301 388 phdaigyKNRGHDRVELGDYEGAITDYNQVIQ 419
Cdd:COG4785  199 -------EDWATAYLLQGDTEEARELFKLALA 223
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 227-361 9.62e-23

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 101.99  E-value: 9.62e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 227 FYLNLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQI 306
Cdd:COG3914   80 LLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL 159

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 504893301 307 GNYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDYA 361
Cdd:COG3914  160 GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNA 214
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 228-360 9.08e-22

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 91.41  E-value: 9.08e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 228 YLNLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIG 307
Cdd:COG4783    7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 504893301 308 NYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDY 360
Cdd:COG4783   87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
223-354 2.67e-20

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 89.59  E-value: 2.67e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 223 DLTIFYLNLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLV 302
Cdd:COG4785   71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504893301 303 HYQIGNYHIAIEAYTQAIRINPHIAINYKNR--------------------ADVRSHIGDTQGAIEDYNQAI 354
Cdd:COG4785  151 LYYLGRYELAIADLEKALELDPNDPERALWLylaerkldpekalallledwATAYLLQGDTEEARELFKLAL 222
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 377-489 1.26e-19

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 85.24  E-value: 1.26e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 377 QQQLKQIIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNF 456
Cdd:COG4783   24 EALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDP 103

                         90       100       110
                 ....*....|....*....|....*....|...
gi 504893301 457 HYVNAYYNRGNALLEIADKQGAVEDFHKAANLY 489
Cdd:COG4783  104 EHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 229-429 1.87e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 91.98  E-value: 1.87e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 229 LNLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIGN 308
Cdd:COG3914   48 LAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGR 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 309 YHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDYATTqkdrqisrylldkqqqlkqiididp 388
Cdd:COG3914  128 LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA------------------------- 182

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 504893301 389 hdaigYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYY 429
Cdd:COG3914  183 -----LNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS 218
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 293-488 3.07e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 91.21  E-value: 3.07e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 293 PQAYNQIGLVHYQIGNYHIAIEAYTQAIRINPHIAINYKNR--ADVRSHIGDTQGAIEDYNQAINLNPDYATTQKDRQIS 370
Cdd:COG3914    1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALglALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 371 RYLLDKQQQ-----------LKQIIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLG 439
Cdd:COG3914   81 LELAALLLQalgryeealalYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 504893301 440 KYAAAIADYTQVIKMNFHYVNAYYNRGNALLEIADKQGAVEDFHKAANL 488
Cdd:COG3914  161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 223-346 3.54e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 90.82  E-value: 3.54e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 223 DLTIFYLNLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLV 302
Cdd:COG3914  110 DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA 189

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 504893301 303 HYQIGNYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGA 346
Cdd:COG3914  190 LQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 227-324 1.25e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 79.47  E-value: 1.25e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 227 FYLNLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQI 306
Cdd:COG4783   40 AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119

                         90
                 ....*....|....*...
gi 504893301 307 GNYHIAIEAYTQAIRINP 324
Cdd:COG4783  120 GRPDEAIAALEKALELDP 137
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 228-324 1.43e-17

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 78.89  E-value: 1.43e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 228 YLNLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIG 307
Cdd:COG4235   20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99

                         90
                 ....*....|....*..
gi 504893301 308 NYHIAIEAYTQAIRINP 324
Cdd:COG4235  100 DYAEAIAAWQKLLALLP 116
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 378-488 8.81e-17

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 76.58  E-value: 8.81e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 378 QQLKQIIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFH 457
Cdd:COG4235    4 ARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPD 83

                         90       100       110
                 ....*....|....*....|....*....|.
gi 504893301 458 YVNAYYNRGNALLEIADKQGAVEDFHKAANL 488
Cdd:COG4235   84 NPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 243-361 1.21e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 76.20  E-value: 1.21e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 243 AAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIGNYHIAIEAYTQAIRI 322
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 504893301 323 NPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDYA 361
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 228-358 1.61e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 73.84  E-value: 1.61e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 228 YLNLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIG 307
Cdd:COG5010   23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 504893301 308 NYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNP 358
Cdd:COG5010  103 DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 231-461 3.40e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 78.59  E-value: 3.40e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  231 LGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIGNYH 310
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYE 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  311 IAIEAYTQAIRINPH----------IAINYKNRADVRSHIGDTQGAIEDYNQAINLnpdYATTQKDrqiSRYLLDKQQQL 380
Cdd:TIGR02917 279 DARETLQDALKSAPEylpalllagaSEYQLGNLEQAYQYLNQILKYAPNSHQARRL---LASIQLR---LGRVDEAIATL 352

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  381 KQIIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVN 460
Cdd:TIGR02917 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432


                  .
gi 504893301  461 A 461
Cdd:TIGR02917 433 A 433
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
235-324 4.16e-15

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 70.97  E-value: 4.16e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 235 YFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAItNYSQAINININHPQAYNQIGLVHYQIGNYHIAIE 314
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                         90
                 ....*....|
gi 504893301 315 AYTQAIRINP 324
Cdd:COG3063   81 YLERALELDP 90
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 397-509 1.21e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 70.99  E-value: 1.21e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 397 RGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNALLEIADKQ 476
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 504893301 477 GAVEDFHKA--------------ANLYWQAGKLAEYKDTQARIIELE 509
Cdd:COG4783   90 EALALLEKAlkldpehpeaylrlARAYRALGRPDEAIAALEKALELD 136
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 278-428 2.28e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 70.03  E-value: 2.28e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 278 AITNYSQAINININHPQAYNQIGLVHYQIGNYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLN 357
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504893301 358 PDYATtqkdrqiSRYLLdkqqqlkqiididphdaigyknrGHDRVELGDYEGAITDYNQVIQINPDDIDAY 428
Cdd:COG4235   82 PDNPE-------ALYLL-----------------------GLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 231-488 5.64e-14

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 74.73  E-value: 5.64e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  231 LGDEYFQKGEYAAAINSYNQALQFNnsDADIYYKLGLVNYQL--GEYHTAITNYSQAINININHPQAYNQIGLVHYQIGN 308
Cdd:TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAID--PRSLYAKLGLAQLALaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGN 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  309 YHIAIEAYTQAIRINP-----HIA---IN-YKNRAD------------VRSHI-------------GDTQGAIEDYNQAI 354
Cdd:TIGR02917 209 IELALAAYRKAIALRPnniavLLAlatILiEAGEFEeaekhadallkkAPNSPlahylkalvdfqkKNYEDARETLQDAL 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  355 NLNPDYATTQKDRQISRYLLDK----QQQLKQIIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYC 430
Cdd:TIGR02917 289 KSAPEYLPALLLAGASEYQLGNleqaYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSL 368

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 504893301  431 RGNAHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNALLEIADKQGAVEDFHKAANL 488
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQL 426
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
403-488 6.11e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 67.50  E-value: 6.11e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 403 ELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIAdYTQVIKMNFHYVNAYYNRGNALLEIADKQGAVEDF 482
Cdd:COG3063    4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82


                 ....*.
gi 504893301 483 HKAANL 488
Cdd:COG3063   83 ERALEL 88
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 257-424 1.34e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 67.91  E-value: 1.34e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 257 SDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIGNYHIAIEAYTQAIRINPHIAINYKNRADV 336
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 337 RSHIGDTQGAIEDYNQAINLNPDYATtqkdrqisrylldkqqqlkqiididphdaiGYKNRGHDRVELGDYEGAITDYNQ 416
Cdd:COG4783   82 LLKAGDYDEALALLEKALKLDPEHPE------------------------------AYLRLARAYRALGRPDEAIAALEK 131


                 ....*...
gi 504893301 417 VIQINPDD 424
Cdd:COG4783  132 ALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
270-359 1.64e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 66.35  E-value: 1.64e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 270 YQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIGNYHIAIeAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIED 349
Cdd:COG3063    3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                         90
                 ....*....|
gi 504893301 350 YNQAINLNPD 359
Cdd:COG3063   82 LERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 403-488 3.52e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 67.29  E-value: 3.52e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 403 ELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNALLEIADKQGAVEDF 482
Cdd:COG5010   66 KLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAAL 145


                 ....*.
gi 504893301 483 HKAANL 488
Cdd:COG5010  146 QRALGT 151
TPR_11 pfam13414
TPR repeat;
232-273 2.63e-12

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 61.33  E-value: 2.63e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 504893301  232 GDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLG 273
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 239-332 2.84e-11

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 62.00  E-value: 2.84e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 239 GEYAAAINSYNQALQFNNSDAD---IYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIGN------- 308
Cdd:PRK02603  49 GEYAEALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEkaeeagd 128

                         90       100       110
                 ....*....|....*....|....*....|.
gi 504893301 309 -------YHIAIEAYTQAIRINPHIAINYKN 332
Cdd:PRK02603 129 qdeaealFDKAAEYWKQAIRLAPNNYIEAQN 159
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 234-478 9.54e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 64.33  E-value: 9.54e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  234 EYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAynQIGLVHYQIGNyhiai 313
Cdd:TIGR02917  31 SYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQV--LPLLARAYLLQ----- 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  314 EAYTQAIRINPHI-AINYKNRADVRSHIGDTQGAIEDYNQAINlnpDYATTQKDRQISrylLDKQQQLKQIididphdai 392
Cdd:TIGR02917 104 GKFQQVLDELPGKtLLDDEGAAELLALRGLAYLGLGQLELAQK---SYEQALAIDPRS---LYAKLGLAQL--------- 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  393 gyknrghdRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNALLEI 472
Cdd:TIGR02917 169 --------ALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEA 240


                  ....*.
gi 504893301  473 ADKQGA 478
Cdd:TIGR02917 241 GEFEEA 246
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
378-455 1.03e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 58.26  E-value: 1.03e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504893301 378 QQLKQIIDIDPHDAIGYKNRGHDRVELGDYEGAItDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMN 455
Cdd:COG3063   13 EYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELD 89
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 233-321 1.15e-10

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 58.85  E-value: 1.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 233 DEYFQKGEYAAAINSYNQALQ-FNNSD--ADIYYKLGLVNYQLGEYHTAITNYSQAINININH---PQAYNQIGLVHYQI 306
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKrYPNSPlaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLEL 80

                         90
                 ....*....|....*
gi 504893301 307 GNYHIAIEAYTQAIR 321
Cdd:COG1729   81 GDYDKARATLEELIK 95
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 218-463 1.84e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 63.56  E-value: 1.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  218 QSTPVDLTIFYLnLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAItNYSQAINININHPQA-- 295
Cdd:TIGR02917  50 QKDPNDAEARFL-LGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVL-DELPGKTLLDDEGAAel 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  296 YNQIGLVHYQIGNYHIAIEAYTQAIRINP----------HIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDYATTQK 365
Cdd:TIGR02917 128 LALRGLAYLGLGQLELAQKSYEQALAIDPrslyaklglaQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  366 DRQISrylldkQQQLKQIIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAI 445
Cdd:TIGR02917 208 NIELA------LAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281

                         250
                  ....*....|....*...
gi 504893301  446 ADYTQVIKMNFHYVNAYY 463
Cdd:TIGR02917 282 ETLQDALKSAPEYLPALL 299
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 240-385 3.20e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 58.82  E-value: 3.20e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 240 EYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIGNYHIAIEAYTQA 319
Cdd:COG5010    1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504893301 320 IRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDYATTQKDRQISRYLLDKQQQLKQIID 385
Cdd:COG5010   81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 403-489 4.41e-10

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 56.92  E-value: 4.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 403 ELGDYEGAITDYNQVIQINPDDI---DAYYCRGNAHFDLGKYAAAIADYTQVIKM---NFHYVNAYYNRGNALLEIADKQ 476
Cdd:COG1729    5 KAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELGDYD 84

                         90
                 ....*....|...
gi 504893301 477 GAVEDFHKAANLY 489
Cdd:COG1729   85 KARATLEELIKKY 97
TPR_11 pfam13414
TPR repeat;
398-439 4.59e-10

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 54.79  E-value: 4.59e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 504893301  398 GHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLG 439
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 295-488 1.15e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 60.77  E-value: 1.15e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  295 AYNQIGLVHYQIGNYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDyattqkdrqisryll 374
Cdd:TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE--------------- 397

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  375 dkqqqlkqiididphDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKm 454
Cdd:TIGR00990 398 ---------------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK- 461

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 504893301  455 NFHYVNAYYN-RGNALLEIADKQGAVEDFHKAANL 488
Cdd:TIGR00990 462 NFPEAPDVYNyYGELLLDQNKFDEAIEKFDTAIEL 496
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 309-462 1.37e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 60.77  E-value: 1.37e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  309 YHIAIEAYTQAIRIN---PHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPdyATTQKdrqisrylldkqqqlkqiid 385
Cdd:TIGR00990 310 YEEAARAFEKALDLGklgEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--RVTQS-------------------- 367

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504893301  386 idphdaigYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVNAY 462
Cdd:TIGR00990 368 --------YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH 436
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 410-497 1.50e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.17  E-value: 1.50e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 410 AITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNALLEIADKQGAVEDFHKA---- 485
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERAlald 81

                         90       100
                 ....*....|....*....|..
gi 504893301 486 ----------ANLYWQAGKLAE 497
Cdd:COG4235   82 pdnpealyllGLAAFQQGDYAE 103
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
336-423 1.99e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.79  E-value: 1.99e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 336 VRSHIGDTQGAIEDYNQAINLNPDYATTQkdRQISRYLLDKQQ-----QLKQIIDIDPHDAIGYKNRGHDRVELGDYEGA 410
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADAL--NNLGLLLLEQGRydeaiALEKALKLDPNNAEALLNLAELLLELGDYDEA 78

                         90
                 ....*....|...
gi 504893301 411 ITDYNQVIQINPD 423
Cdd:COG3063   79 LAYLERALELDPS 91
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 229-496 2.42e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 60.10  E-value: 2.42e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  229 LNLGDEYFQKGEYAAAINSYNQALQFNNsdADIYYKLGLVNYQL--GEYHTAITNYSQAINININHPQAYNQIGLVHYQI 306
Cdd:TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNP--QEIEPALALAQYYLgkGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  307 GNYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDYaTTQKDRQISRYLLDKQ-----QQLK 381
Cdd:TIGR02917 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN-TEAQIGLAQLLLAAKRtesakKIAK 693

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  382 QIIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCrGNAHFDLGKYAAAIADYTQVIKMNFHYVNA 461
Cdd:TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL-HRALLASGNTAEAVKTLEAWLKTHPNDAVL 772

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 504893301  462 YYNRGNALLEIADKQGAVEDFHKAA-----------NLYWQAGKLA 496
Cdd:TIGR02917 773 RTALAELYLAQKDYDKAIKHYQTVVkkapdnavvlnNLAWLYLELK 818
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 378-455 4.53e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 55.35  E-value: 4.53e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504893301 378 QQLKQIIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMN 455
Cdd:COG5010   75 ALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 224-356 5.22e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 58.84  E-value: 5.22e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  224 LTIFYLNLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVH 303
Cdd:TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 504893301  304 YQIGNYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINL 356
Cdd:TIGR00990 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496
ycf3 CHL00033
photosystem I assembly protein Ycf3
 238-324 2.70e-08

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 53.47  E-value: 2.70e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 238 KGEYAAAINSYNQALQFNNSDAD---IYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLV-HYQ------IG 307
Cdd:CHL00033  48 EGEYAEALQNYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIcHYRgeqaieQG 127

                         90       100
                 ....*....|....*....|....
gi 504893301 308 NYHI-------AIEAYTQAIRINP 324
Cdd:CHL00033 128 DSEIaeawfdqAAEYWKQAIALAP 151
TPR_12 pfam13424
Tetratricopeptide repeat;
259-322 8.54e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 49.31  E-value: 8.54e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504893301  259 ADIYYKLGLVNYQLGEYHTAITNYSQAININI-----NHPQ---AYNQIGLVHYQIGNYHIAIEAYTQAIRI 322
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIARrllgpDHPLtatTLLNLGRLYLELGRYEEALELLERALAL 74
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 406-488 9.46e-08

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 54.02  E-value: 9.46e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 406 DYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNALLEIADKQGAVEDFHKA 485
Cdd:PLN03088  17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKG 96


                 ...
gi 504893301 486 ANL 488
Cdd:PLN03088  97 ASL 99
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 255-476 1.92e-07

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 52.19  E-value: 1.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 255 NNSDADIYYKLGLVNYQLGEYHTAITNYSQAINiniNHP------QAYNQIGLVHYQIGNYHIAIEAYTQAIRINP---H 325
Cdd:COG4105   28 KSWDAEELYEEAKEALEKGDYEKAIKLFEELEP---RYPgspyaeQAQLMLAYAYYKQGDYEEAIAAADRFIKLYPnspN 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 326 IA--------INYKNRADVRSHIGDTQGAIEDYNQAINLNPDyattqkdrqiSRYLLDKQQQLKQIididpHDAIGYK-- 395
Cdd:COG4105  105 ADyayylrglSYYEQSPDSDRDQTSTRKAIEAFQELINRYPD----------SEYAEDAKKRIDEL-----RDKLARKel 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 396 NRGHDRVELGDYEGAITDYNQVIQINPDDI---DAYYCRGNAHFDLGKYAAAIaDYTQVIKMNFHYvNAYYNRGNALLEI 472
Cdd:COG4105  170 EVARYYLKRGAYVAAINRFQNVLEDYPDTPaveEALYLLVEAYYALGRYDEAQ-DAAAVLGKNYPD-SPYLKDAEKLLKK 247


                 ....
gi 504893301 473 ADKQ 476
Cdd:COG4105  248 IGKE 251
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 227-289 2.11e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.73  E-value: 2.11e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504893301 227 FYLNLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAININ 289
Cdd:COG5010   90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 230-488 2.82e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 53.06  E-value: 2.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  230 NLGDEYFQKGEYAAAINSYNQALQFNnSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIGNY 309
Cdd:TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECK-PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  310 HIAIEAYTQAI--------RINPHIAINYKNRADVRS-HIGDTQGA-------IEDYNQAINLNPDYATTQKDRQISRYL 373
Cdd:TIGR00990 211 ADALLDLTASCiidgfrneQSAQAVERLLKKFAESKAkEILETKPEnlpsvtfVGNYLQSFRPKPRPAGLEDSNELDEET 290

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  374 LDKQQQL---------------------KQII--DIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYC 430
Cdd:TIGR00990 291 GNGQLQLglkspeskadesyeeaarafeKALDlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIK 370

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 504893301  431 RGNAHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNALLEIADKQGAVEDFHKAANL 488
Cdd:TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 394-489 3.37e-07

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 48.82  E-value: 3.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  394 YKNRGHDRVELGDYEGAITDYNQVIQINPDDI---DAYYCRGNAHFDLGKYAAAIADYTQVIKmnfHYVN------AYYN 464
Cdd:TIGR02795   3 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTyapNAHYWLGEAYYAQGDYADAAKAFLAVVK---KYPKspkapdALLK 79

                          90       100
                  ....*....|....*....|....*
gi 504893301  465 RGNALLEIADKQGAVEDFHKAANLY 489
Cdd:TIGR02795  80 LGMSLQELGDKEKAKATLQQVIKRY 104
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 372-488 3.92e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.96  E-value: 3.92e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 372 YLLDKQQQLKQIIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQV 451
Cdd:COG5010    1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 504893301 452 IKMNFHYVNAYYNRGNALLEIADKQGAVEDFHKAANL 488
Cdd:COG5010   81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL 117
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 207-476 4.63e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.78  E-value: 4.63e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  207 SDLPQSQIIKPQSTPVDLTIFYlnlgdEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAI 286
Cdd:TIGR02917 418 ADLETAAQLDPELGRADLLLIL-----SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  287 NININHPQAYNQIGLVHYQIGNYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDyaTTQKD 366
Cdd:TIGR02917 493 SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ--EIEPA 570

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  367 RQISRYLLdKQQQLKQ-------IIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLG 439
Cdd:TIGR02917 571 LALAQYYL-GKGQLKKalailneAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMK 649

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 504893301  440 KYAAAIADYTQVIKMNFHYVNAyyNRGNALLEIADKQ 476
Cdd:TIGR02917 650 NYAKAITSLKRALELKPDNTEA--QIGLAQLLLAAKR 684
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
228-289 4.82e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.86  E-value: 4.82e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504893301 228 YLNLGDEYFQKGEYAAAInSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAININ 289
Cdd:COG3063   29 LNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELD 89
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 378-453 5.39e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.45  E-value: 5.39e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 378 QQLKQIIDIDPHDAIG---YKNRGHDRVELGDYEGAITDYNQVIQINPDDI---DAYYCRGNAHFDLGKYAAAIADYTQV 451
Cdd:COG1729   14 AAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARATLEEL 93


                 ..
gi 504893301 452 IK 453
Cdd:COG1729   94 IK 95
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 228-485 1.20e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.24  E-value: 1.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  228 YLNLGDEYFQKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIG 307
Cdd:TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  308 NYHIAIEAYTQAIRINPHiAINyKNRADVRSHIGDTQGAiedynQAINLNPDYATTQKDRQ------ISRYLLDKQQQ-- 379
Cdd:TIGR02917 548 NEEEAVAWLEKAAELNPQ-EIE-PALALAQYYLGKGQLK-----KALAILNEAADAAPDSPeawlmlGRAQLAAGDLNka 620

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  380 ---LKQIIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAA--IADYTQVIKM 454
Cdd:TIGR02917 621 vssFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAkkIAKSLQKQHP 700

                         250       260       270
                  ....*....|....*....|....*....|.
gi 504893301  455 NFHYVNAYynRGNALLEIADKQGAVEDFHKA 485
Cdd:TIGR02917 701 KAALGFEL--EGDLYLRQKDYPAAIQAYRKA 729
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 228-295 2.45e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.52  E-value: 2.45e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504893301 228 YLNLGDEYFQKGEYAAAINSYNQALQ-FNNSD--ADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQA 295
Cdd:COG1729   33 LYWLGEAYYALGDYDEAAEAFEKLLKrYPDSPkaPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
TPR_11 pfam13414
TPR repeat;
266-307 2.75e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 44.00  E-value: 2.75e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 504893301  266 GLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIG 307
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 424-497 3.46e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.72  E-value: 3.46e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 424 DIDAYYCRGNAHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNALLEIADKQGAVEDFHKA--------------ANLY 489
Cdd:COG4783    3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEAleldpdepearlnlGLAL 82


                 ....*...
gi 504893301 490 WQAGKLAE 497
Cdd:COG4783   83 LKAGDYDE 90
ycf3 CHL00033
photosystem I assembly protein Ycf3
 262-359 9.09e-06

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 46.15  E-value: 9.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 262 YYKLGLVNYQLGEYHTAITNYSQAINININHPQA----YNqIGLVHYQIGNYHIAIEAYTQAIRINP-------HIAINY 330
Cdd:CHL00033  38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRsyilYN-IGLIHTSNGEHTKALEYYFQALERNPflpqalnNMAVIC 116

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 504893301 331 KNRADVRSHIGDTQ-------GAIEDYNQAINLNPD 359
Cdd:CHL00033 117 HYRGEQAIEQGDSEiaeawfdQAAEYWKQAIALAPG 152
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 382-446 9.51e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 47.86  E-value: 9.51e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504893301 382 QIIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIA 446
Cdd:PLN03088  27 QAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91
TPR_11 pfam13414
TPR repeat;
432-471 1.22e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 42.46  E-value: 1.22e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 504893301  432 GNAHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNALLE 471
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
TPR_12 pfam13424
Tetratricopeptide repeat;
295-359 1.61e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.14  E-value: 1.61e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504893301  295 AYNQIGLVHYQIGNYHIAIEAYTQAIRI--------NPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPD 359
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 270-368 1.62e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 44.21  E-value: 1.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 270 YQLGEYHTAITNYSQAINININH---PQAYNQIGLVHYQIGNYHIAIEAYTQAIRINP---HIAINYKNRADVRSHIGDT 343
Cdd:COG1729    4 LKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELGDY 83

                         90       100
                 ....*....|....*....|....*
gi 504893301 344 QGAIEDYNQAINLNPDYATTQKDRQ 368
Cdd:COG1729   84 DKARATLEELIKKYPDSEAAKEARA 108
TPR_1 pfam00515
Tetratricopeptide repeat;
293-325 2.22e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 41.25  E-value: 2.22e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 504893301  293 PQAYNQIGLVHYQIGNYHIAIEAYTQAIRINPH 325
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 293-325 2.36e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 2.36e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 504893301   293 PQAYNQIGLVHYQIGNYHIAIEAYTQAIRINPH 325
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 229-320 2.65e-05

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 45.62  E-value: 2.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  229 LNLGDEYFQKGEYAAAINSYNQALQF--NNSDAD-IYYKLGLVNYQL--------GEYHTAITNYSQAINiniNHPQ--- 294
Cdd:TIGR03302  74 LDLAYAYYKSGDYAEAIAAADRFIRLhpNHPDADyAYYLRGLSNYNQidrvdrdqTAAREAFEAFQELIR---RYPNsey 150

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 504893301  295 ---AYNQIGLVH-------YQIGNYHIAIEAYTQAI 320
Cdd:TIGR03302 151 apdAKKRMDYLRnrlagkeLYVARFYLKRGAYVAAI 186
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 228-456 2.90e-05

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 45.62  E-value: 2.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  228 YLNLGDEYFQKGEYAAAINSYnQALQ----FNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQA-YnqiglV 302
Cdd:TIGR03302  36 LYEEAKEALDSGDYTEAIKYF-EALEsrypFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAdY-----A 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  303 HYQIGNyhiaieaytqairinphiaINYKNRADVRSHIGDTQGAIEDYNQAINLNPDyattqkdrqiSRYLLDKQQQLKQ 382
Cdd:TIGR03302 110 YYLRGL-------------------SNYNQIDRVDRDQTAAREAFEAFQELIRRYPN----------SEYAPDAKKRMDY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  383 IIDI--DPHDAIG--YKNRGHdrvelgdYEGAITDYNQVIQINPD---DIDAYYCRGNAHFDLGKYAAAiADYTQVIKMN 455
Cdd:TIGR03302 161 LRNRlaGKELYVArfYLKRGA-------YVAAINRFQTVVENYPDtpaTEEALARLVEAYLKLGLTDLA-QDAAAVLGAN 232


                  .
gi 504893301  456 F 456
Cdd:TIGR03302 233 Y 233
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 308-361 2.94e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.32  E-value: 2.94e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 504893301 308 NYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDYA 361
Cdd:PLN03088  17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA 70
TPR_1 pfam00515
Tetratricopeptide repeat;
425-455 3.56e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.87  E-value: 3.56e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 504893301  425 IDAYYCRGNAHFDLGKYAAAIADYTQVIKMN 455
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
434-512 5.58e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 5.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 434 AHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNALLEIADKQGAvEDFHKA--------------ANLYWQAGKLAEYK 499
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKAlkldpnnaeallnlAELLLELGDYDEAL 79

                         90
                 ....*....|...
gi 504893301 500 DTQARIIELEIEA 512
Cdd:COG3063   80 AYLERALELDPSA 92
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 425-455 6.23e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.12  E-value: 6.23e-05
                           10        20        30
                   ....*....|....*....|....*....|.
gi 504893301   425 IDAYYCRGNAHFDLGKYAAAIADYTQVIKMN 455
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELD 31
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 396-454 9.11e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 40.78  E-value: 9.11e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504893301  396 NRGHDRVELGDYEGAITDYNQVIQIN---PDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKM 454
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRA 63
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 258-359 9.23e-05

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 43.12  E-value: 9.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 258 DADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQA----YNqIGLVHYQIGNYHIAIEAYTQAIRINP-------HI 326
Cdd:PRK02603  34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRsyilYN-MGIIYASNGEHDKALEYYHQALELNPkqpsalnNI 112

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 504893301 327 AINYKNRADVRSHIGDTQG-------AIEDYNQAINLNPD 359
Cdd:PRK02603 113 AVIYHKRGEKAEEAGDQDEaealfdkAAEYWKQAIRLAPN 152
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 431-492 1.90e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 39.63  E-value: 1.90e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 504893301  431 RGNAHFDLGKYAAAIADYTQVIKMNF---HYVNAYYNRGNALLEIADKQGAVEDFHKAANLYWQA 492
Cdd:pfam13432   3 LARAALRAGDYDDAAAALEAALARFPespDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
TPR_9 pfam13371
Tetratricopeptide repeat;
383-427 2.50e-04

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 39.51  E-value: 2.50e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 504893301  383 IIDIDPHDAIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIDA 427
Cdd:pfam13371  21 LLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
TPR_12 pfam13424
Tetratricopeptide repeat;
228-288 3.56e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 39.29  E-value: 3.56e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 504893301  228 YLNLGDEYFQKGEYAAAINSYNQALQ--------FNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINI 288
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 391-482 3.79e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 43.05  E-value: 3.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  391 AIGYKNRGHDRVELGDYEGAITDYNQVIQINPDDIdaYYC-RGNAHFDLGKYAAAIADYTQVIKMNFHYVNAYYNRGNAL 469
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV--YYSnRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204

                          90
                  ....*....|...
gi 504893301  470 LEIADKQGAVEDF 482
Cdd:TIGR00990 205 DGLGKYADALLDL 217
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 293-325 3.86e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.89  E-value: 3.86e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 504893301  293 PQAYNQIGLVHYQIGNYHIAIEAYTQAIRINPH 325
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_1 pfam00515
Tetratricopeptide repeat;
391-424 4.19e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 4.19e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 504893301  391 AIGYKNRGHDRVELGDYEGAITDYNQVIQINPDD 424
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 228-258 5.26e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 5.26e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 504893301   228 YLNLGDEYFQKGEYAAAINSYNQALQFNNSD 258
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
COG3899 COG3899
Predicted ATPase [General function prediction only];
227-356 5.55e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 42.92  E-value: 5.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  227 FYLNLGDEYFQKGEYAAAINSYNQALQFNNSD------ADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIG 300
Cdd:COG3899   707 LLLRAARRALARGAYAEALRYLERALELLPPDpeeeyrLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHG 786

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504893301  301 -----------LVHYQIGNYHIAIEAYTQAIRI------NPHIAINYKNRADVRSHIGDTQGAIEDYNQAINL 356
Cdd:COG3899   787 nppasarayanLGLLLLGDYEEAYEFGELALALaerlgdRRLEARALFNLGFILHWLGPLREALELLREALEA 859
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 229-293 6.32e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 38.09  E-value: 6.32e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504893301  229 LNLGDEYFQKGEYAAAINSYNQALQFNNS---DADIYYKLGLVNYQLGEYHTAITNYSQAINININHP 293
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 426-455 1.01e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 36.73  E-value: 1.01e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 504893301  426 DAYYCRGNAHFDLGKYAAAIADYTQVIKMN 455
Cdd:pfam07719   2 EALYNLGLAYYKLGDYEEALEAYEKALELD 31
TPR_1 pfam00515
Tetratricopeptide repeat;
228-255 1.05e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 1.05e-03
                          10        20
                  ....*....|....*....|....*...
gi 504893301  228 YLNLGDEYFQKGEYAAAINSYNQALQFN 255
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELN 31
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 298-361 1.33e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 37.32  E-value: 1.33e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 504893301  298 QIGLVHYQIGNYHIAIEAYTQAIRIN---PHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDYA 361
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 259-292 1.60e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 1.60e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 504893301   259 ADIYYKLGLVNYQLGEYHTAITNYSQAINININH 292
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 259-334 1.61e-03

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 40.64  E-value: 1.61e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504893301 259 ADIYYKLGLVNYQLGEYHTAITNYSQAINININHPQAYNQIGLVHYQIGNYHIAIEAYTQAIRINPHIAINYKNRA 334
Cdd:PRK11189  64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG 139
TPR_8 pfam13181
Tetratricopeptide repeat;
294-324 1.72e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 35.84  E-value: 1.72e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 504893301  294 QAYNQIGLVHYQIGNYHIAIEAYTQAIRINP 324
Cdd:pfam13181   2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDP 32
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 434-489 1.78e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.05  E-value: 1.78e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 504893301 434 AHFDLGKYAAAIADYTQVIKM---NFHYVNAYYNRGNALLEIADKQGAVEDFHKAANLY 489
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY 60
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
228-279 1.81e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 40.25  E-value: 1.81e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 504893301 228 YLNLGDEYFQKGEYAAAINSYNQALQ--FNNsDADIYYKLGLVNYQLGEYHTAI 279
Cdd:COG4700   92 RVRLADALLELGRYDEAIELYEEALTgiFAD-DPHILLGLAQALFELGRYAEAL 144
ANAPC3 pfam12895
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ...
 237-316 2.18e-03

Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.


Pssm-ID: 463743 [Multi-domain]  Cd Length: 82  Bit Score: 37.23  E-value: 2.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301  237 QKGEYAAAINSYNQALQFNNSDADIYYKLGLVNYQLGEYHTAItNYSQAINININHPQAYNQIGLVHYQIGNYHIAIEAY 316
Cdd:pfam12895   1 DQHQYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAY-ELLRKAKLNGSSLGCRYLFAQCLLKLKKYDEALDAL 79
TPR_19 pfam14559
Tetratricopeptide repeat;
405-446 2.99e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.41  E-value: 2.99e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 504893301  405 GDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIA 446
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEA 43
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 391-424 3.51e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 3.51e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 504893301   391 AIGYKNRGHDRVELGDYEGAITDYNQVIQINPDD 424
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_17 pfam13431
Tetratricopeptide repeat;
414-446 3.73e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.21  E-value: 3.73e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 504893301  414 YNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIA 446
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_9 pfam13371
Tetratricopeptide repeat;
405-454 4.72e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 36.04  E-value: 4.72e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 504893301  405 GDYEGAITDYNQVIQINPDDIDAYYCRGNAHFDLGKYAAAIADYTQVIKM 454
Cdd:pfam13371   9 EDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLEL 58
TPR_1 pfam00515
Tetratricopeptide repeat;
259-289 5.30e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 5.30e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 504893301  259 ADIYYKLGLVNYQLGEYHTAITNYSQAININ 289
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
TPR_1 pfam00515
Tetratricopeptide repeat;
330-360 9.20e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 33.93  E-value: 9.20e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 504893301  330 YKNRADVRSHIGDTQGAIEDYNQAINLNPDY 360
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 228-273 9.58e-03

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 37.94  E-value: 9.58e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 504893301 228 YLNLGDEYFQKGEYAAAINSYNQALQF--NNSDAD-IYYKLGLVNYQLG 273
Cdd:COG4105   72 QLMLAYAYYKQGDYEEAIAAADRFIKLypNSPNADyAYYLRGLSYYEQS 120
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 307-403 9.86e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 37.99  E-value: 9.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504893301 307 GNYHIAIEAYTQAIRINPHIAINYKNRADVRSHIGDTQGAIEDYNQAINLNPDYATtqkdrqiSRYLldkqqQLKQIidI 386
Cdd:cd24142   14 GNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGY-------EKYL-----YLGQL--S 79

                         90
                 ....*....|....*..
gi 504893301 387 DPHDAIGYKNRGHDRVE 403
Cdd:cd24142   80 GGEEALQYYEKGIEILE 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH