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Conserved domains on  [gi|50510897|dbj|BAD32434|]
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mKIAA1361 protein, partial [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG2433 super family cl43687
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
113-229 1.38e-04

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


The actual alignment was detected with superfamily member COG2433:

Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 43.69  E-value: 1.38e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897 113 AILAEQYDHSINEMLSTqALRLDEAQEAECQVLK---MQLQQELELLNAYQSKIKMQAEAQhDRELRELEQRVSLRRALL 189
Cdd:COG2433 380 EALEELIEKELPEEEPE-AEREKEHEERELTEEEeeiRRLEEQVERLEAEVEELEAELEEK-DERIERLERELSEARSEE 457

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 50510897 190 EQKI--EEEMLALQNErTERIRSLLERQAREIEAFDSESMRL 229
Cdd:COG2433 458 RREIrkDREISRLDRE-IERLERELEEERERIEELKRKLERL 498
PRP super family cl46992
Major prion protein; The prion protein is a major component of scrapie-associated fibrils in ...
 248-305 1.57e-03

Major prion protein; The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.


The actual alignment was detected with superfamily member smart00157:

Pssm-ID: 197548 [Multi-domain]  Cd Length: 218  Bit Score: 39.47  E-value: 1.57e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 50510897    248 YPGASSWSHNPTGGPGPHWGHPMGGtpqAWGHPMQGGpqpWGHPSGPMQGVPRGSSMG 305
Cdd:smart00157  17 YPGQGSPGGNRYPPQGGGWGQPHGG---GWGQPHGGG---WGQPHGGGWGQPHGGGWG 68
 
Name Accession Description Interval E-value
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
113-229 1.38e-04

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 43.69  E-value: 1.38e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897 113 AILAEQYDHSINEMLSTqALRLDEAQEAECQVLK---MQLQQELELLNAYQSKIKMQAEAQhDRELRELEQRVSLRRALL 189
Cdd:COG2433 380 EALEELIEKELPEEEPE-AEREKEHEERELTEEEeeiRRLEEQVERLEAEVEELEAELEEK-DERIERLERELSEARSEE 457

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 50510897 190 EQKI--EEEMLALQNErTERIRSLLERQAREIEAFDSESMRL 229
Cdd:COG2433 458 RREIrkDREISRLDRE-IERLERELEEERERIEELKRKLERL 498
PRK12704 PRK12704
phosphodiesterase; Provisional
 107-219 6.48e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 41.30  E-value: 6.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897  107 EQTRKLAILA--EQYDHSINEMLSTQALRLDEAQEAECQVL--KMQLQQELELLNAYQSKIKmqaeaQHDRELRELEQRV 182
Cdd:PRK12704  52 EAIKKEALLEakEEIHKLRNEFEKELRERRNELQKLEKRLLqkEENLDRKLELLEKREEELE-----KKEKELEQKQQEL 126

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 50510897  183 SLRRALLEQKIEEemlalQNERTERIRSLLERQAREI 219
Cdd:PRK12704 127 EKKEEELEELIEE-----QLQELERISGLTAEEAKEI 158
PRP smart00157
Major prion protein; The prion protein is a major component of scrapie-associated fibrils in ...
 248-305 1.57e-03

Major prion protein; The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.


Pssm-ID: 197548 [Multi-domain]  Cd Length: 218  Bit Score: 39.47  E-value: 1.57e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 50510897    248 YPGASSWSHNPTGGPGPHWGHPMGGtpqAWGHPMQGGpqpWGHPSGPMQGVPRGSSMG 305
Cdd:smart00157  17 YPGQGSPGGNRYPPQGGGWGQPHGG---GWGQPHGGG---WGQPHGGGWGQPHGGGWG 68
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 23-225 2.02e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 2.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897     23 RLQHQTELTNQ-LEYNKRRERELRRKHVMEVRQQPKSLKSKELQIKKQfQDTCKIQTRQYKALRNHLLETtpKSEHKAVL 101
Cdd:TIGR02168  204 SLERQAEKAERyKELKAELRELELALLVLRLEELREELEELQEELKEA-EEELEELTAELQELEEKLEEL--RLEVSELE 280

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897    102 KRLKEEQTRKLAILAEQ---------------YDHSINEMLSTQAL----RLDEAQE--AECQVLKMQLQQELELLNAYQ 160
Cdd:TIGR02168  281 EEIEELQKELYALANEIsrleqqkqilrerlaNLERQLEELEAQLEelesKLDELAEelAELEEKLEELKEELESLEAEL 360

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 50510897    161 SKIKMQAEAQHDR--ELRELEQRVSLRRALLEQKIEEEMLALQN--ERTERIRSLLERQAREIEAFDSE 225
Cdd:TIGR02168  361 EELEAELEELESRleELEEQLETLRSKVAQLELQIASLNNEIERleARLERLEDRRERLQQEIEELLKK 429
 
Name Accession Description Interval E-value
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
113-229 1.38e-04

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 43.69  E-value: 1.38e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897 113 AILAEQYDHSINEMLSTqALRLDEAQEAECQVLK---MQLQQELELLNAYQSKIKMQAEAQhDRELRELEQRVSLRRALL 189
Cdd:COG2433 380 EALEELIEKELPEEEPE-AEREKEHEERELTEEEeeiRRLEEQVERLEAEVEELEAELEEK-DERIERLERELSEARSEE 457

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 50510897 190 EQKI--EEEMLALQNErTERIRSLLERQAREIEAFDSESMRL 229
Cdd:COG2433 458 RREIrkDREISRLDRE-IERLERELEEERERIEELKRKLERL 498
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 96-221 5.95e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.85  E-value: 5.95e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897  96 EHKAVLKRLKEEQTRKLAILAEqydhsINEMLSTQALRLDEAQEAecqvLKMQLQQELELLNAYQSKIKMQAEAQHD-RE 174
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEE-----AEAELAEAEEALLEAEAE----LAEAEEELEELAEELLEALRAAAELAAQlEE 404

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 50510897 175 LRELEQRVSLRRALLEQKIEEEMLALQNERTERIRSLLERQAREIEA 221
Cdd:COG1196 405 LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
51-209 6.29e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.54  E-value: 6.29e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897  51 EVRQQPKSLKSKELQIKKQFQDTCKI-----QTRQYKALRNHLLETtpKSEHKAVLKRLKEEQTRKLAILAEQydHSINE 125
Cdd:COG3206 230 EARAELAEAEARLAALRAQLGSGPDAlpellQSPVIQQLRAQLAEL--EAELAELSARYTPNHPDVIALRAQI--AALRA 305

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897 126 MLSTQALRLDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQhdRELRELEQRVSLRRALLE---QKIEEEMLAlQN 202
Cdd:COG3206 306 QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE--AELRRLEREVEVARELYEsllQRLEEARLA-EA 382


                ....*..
gi 50510897 203 ERTERIR 209
Cdd:COG3206 383 LTVGNVR 389
PRK12704 PRK12704
phosphodiesterase; Provisional
 107-219 6.48e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 41.30  E-value: 6.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897  107 EQTRKLAILA--EQYDHSINEMLSTQALRLDEAQEAECQVL--KMQLQQELELLNAYQSKIKmqaeaQHDRELRELEQRV 182
Cdd:PRK12704  52 EAIKKEALLEakEEIHKLRNEFEKELRERRNELQKLEKRLLqkEENLDRKLELLEKREEELE-----KKEKELEQKQQEL 126

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 50510897  183 SLRRALLEQKIEEemlalQNERTERIRSLLERQAREI 219
Cdd:PRK12704 127 EKKEEELEELIEE-----QLQELERISGLTAEEAKEI 158
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 101-221 7.86e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.46  E-value: 7.86e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897 101 LKRLKEEQTRKLAILAEQYDHSINEMLSTQALRLDEAQEAEcqvlkmQLQQELELLNAYQSKIKMQAEAQHDRELRELEQ 180
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE------EAEAELAEAEEALLEAEAELAEAEEELEELAEE 387

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 50510897 181 RVSLRRALLE--QKIEEEMLALQNERTERIRSLLERQAREIEA 221
Cdd:COG1196 388 LLEALRAAAElaAQLEELEEAEEALLERLERLEEELEELEEAL 430
PRP smart00157
Major prion protein; The prion protein is a major component of scrapie-associated fibrils in ...
 248-305 1.57e-03

Major prion protein; The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.


Pssm-ID: 197548 [Multi-domain]  Cd Length: 218  Bit Score: 39.47  E-value: 1.57e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 50510897    248 YPGASSWSHNPTGGPGPHWGHPMGGtpqAWGHPMQGGpqpWGHPSGPMQGVPRGSSMG 305
Cdd:smart00157  17 YPGQGSPGGNRYPPQGGGWGQPHGG---GWGQPHGGG---WGQPHGGGWGQPHGGGWG 68
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 23-225 2.02e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 2.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897     23 RLQHQTELTNQ-LEYNKRRERELRRKHVMEVRQQPKSLKSKELQIKKQfQDTCKIQTRQYKALRNHLLETtpKSEHKAVL 101
Cdd:TIGR02168  204 SLERQAEKAERyKELKAELRELELALLVLRLEELREELEELQEELKEA-EEELEELTAELQELEEKLEEL--RLEVSELE 280

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897    102 KRLKEEQTRKLAILAEQ---------------YDHSINEMLSTQAL----RLDEAQE--AECQVLKMQLQQELELLNAYQ 160
Cdd:TIGR02168  281 EEIEELQKELYALANEIsrleqqkqilrerlaNLERQLEELEAQLEelesKLDELAEelAELEEKLEELKEELESLEAEL 360

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 50510897    161 SKIKMQAEAQHDR--ELRELEQRVSLRRALLEQKIEEEMLALQN--ERTERIRSLLERQAREIEAFDSE 225
Cdd:TIGR02168  361 EELEAELEELESRleELEEQLETLRSKVAQLELQIASLNNEIERleARLERLEDRRERLQQEIEELLKK 429
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 102-225 2.30e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.92  E-value: 2.30e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897 102 KRLKEEQTRKLAILAEQYDHSINEMLSTQALRLDEAQEAECQVLKMQLQQELELLNAyqsKIKMQAEAQHDRELRELEQR 181
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL---RLELEELELELEEAQAEEYE 292

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 50510897 182 VSLRRALLEQKIEEEMLALQNERTERIRSLLERQ--AREIEAFDSE 225
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAelEEELEELEEE 338
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
51-221 2.85e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 39.37  E-value: 2.85e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897  51 EVRQQPKSLKSKELQIKKQFQDTCKIQTR------QYKALRNHLLETTPKSEHKAVLKRLKEEQtRKLAILAEQYDHSIN 124
Cdd:COG4717  75 ELEEELKEAEEKEEEYAELQEELEELEEEleeleaELEELREELEKLEKLLQLLPLYQELEALE-AELAELPERLEELEE 153

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897 125 EMLSTQALRLD-EAQEAECQvlkmQLQQELELLNAYQSKIKMQAEAQHDRELRELEQRVSLRRALLEQKIEEEMLALQNE 203
Cdd:COG4717 154 RLEELRELEEElEELEAELA----ELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229

                       170
                ....*....|....*...
gi 50510897 204 RTERIRSLLERQAREIEA 221
Cdd:COG4717 230 EQLENELEAAALEERLKE 247
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
53-225 4.45e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 38.98  E-value: 4.45e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897  53 RQQPKSLKSKELQIKKQFQDTCKIQTRQYKALRNHLLETTPKSEHKAVLKRLKEEQTRKLAILAEQYDHsINEMLSTQAL 132
Cdd:COG4717  62 QGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPL-YQELEALEAE 140

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897 133 RLDEAQEAEcqVLKMQLQQELELLNAYQSKIKMQAEAQhdRELRELEQRVSLRRALLEQKIEEEMLALQNERtERIRSLL 212
Cdd:COG4717 141 LAELPERLE--ELEERLEELRELEEELEELEAELAELQ--EELEELLEQLSLATEEELQDLAEELEELQQRL-AELEEEL 215

                       170
                ....*....|...
gi 50510897 213 ERQAREIEAFDSE 225
Cdd:COG4717 216 EEAQEELEELEEE 228
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
 72-229 5.75e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 38.78  E-value: 5.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897   72 DTCKIQTRQYKALRNHLLETTPKSEHKAVLKRLKEEQtRKLAILAEQYDHSIN------EMLSTQALRLDEAQE------ 139
Cdd:COG3096  495 QTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQ-QNAERLLEEFCQRIGqqldaaEELEELLAELEAQLEeleeqa 573

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897  140 AECQVLKMQLQQELELLNAYQSK--------IKMQAEAQHDRE-----LRELEQRVSLRRALLEQ----KIEEEMLALQN 202
Cdd:COG3096  574 AEAVEQRSELRQQLEQLRARIKElaarapawLAAQDALERLREqsgeaLADSQEVTAAMQQLLERereaTVERDELAARK 653

                        170       180
                 ....*....|....*....|....*...
gi 50510897  203 ERterirslLERQAREIEAFD-SESMRL 229
Cdd:COG3096  654 QA-------LESQIERLSQPGgAEDPRL 674
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 51-221 5.79e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 38.50  E-value: 5.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897     51 EVRQQPKSLKSKELQIKKQFQDTCKIQTR---QYKALRNHLLETTPK-SEHKAVLKRLKEEQtRKLAILAEQYDHSINEm 126
Cdd:TIGR02168  681 ELEEKIEELEEKIAELEKALAELRKELEEleeELEQLRKELEELSRQiSALRKDLARLEAEV-EQLEERIAQLSKELTE- 758

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897    127 lSTQALRLDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQhDRELRELEQRVS-LRRALLEQKIEEEMLALQNERT 205
Cdd:TIGR02168  759 -LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL-REALDELRAELTlLNEEAANLRERLESLERRIAAT 836

                          170
                   ....*....|....*.
gi 50510897    206 ERIRSLLERQAREIEA 221
Cdd:TIGR02168  837 ERRLEDLEEQIEELSE 852
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 51-229 7.69e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 38.38  E-value: 7.69e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897  51 EVRQQPKSLK------------SKELQIKKQFQDTCKIQ--TRQYKALRNHLLETTPKSEHKAVLKRLKEEQTRKLAILA 116
Cdd:COG1196 197 ELERQLEPLErqaekaeryrelKEELKELEAELLLLKLRelEAELEELEAELEELEAELEELEAELAELEAELEELRLEL 276

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897 117 EQYDHSINEM------LSTQALRLDEAQEAECQvLKMQLQQELELLNAYQSKIKMQAEAQHDRELRELEQRVSLRRALLE 190
Cdd:COG1196 277 EELELELEEAqaeeyeLLAELARLEQDIARLEE-RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 50510897 191 qkIEEEMLALQNERTERIRSLLERQAREIEAFDSESMRL 229
Cdd:COG1196 356 --AEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
PRK12705 PRK12705
hypothetical protein; Provisional
 67-219 8.19e-03

hypothetical protein; Provisional


Pssm-ID: 237178 [Multi-domain]  Cd Length: 508  Bit Score: 37.77  E-value: 8.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897   67 KKQFQDTCKIQTRQYKALRNHLLETTPKSEHKAVLKRLKEEQTRKLAILAEQYDHSINemlstQALRLDEAQEAECQVLK 146
Cdd:PRK12705  27 KRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEE-----RLVQKEEQLDARAEKLD 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897  147 MQLQQELELLNAYQSKIKMQAEAQHDRElRELEQRVSLRRA--------LLEQKIEEEMLALQNERTERIRSLLERQARE 218
Cdd:PRK12705 102 NLENQLEEREKALSARELELEELEKQLD-NELYRVAGLTPEqarklllkLLDAELEEEKAQRVKKIEEEADLEAERKAQN 180


                 .
gi 50510897  219 I 219
Cdd:PRK12705 181 I 181
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 94-218 9.31e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 37.99  E-value: 9.31e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50510897  94 KSEHKAVLKRLKEEQTRKLAILAEQYDHSINEMLSTQALRLDEAQEAECQVLKMQLQQELELLNAYQSKIKMQAEAQHDR 173
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 50510897 174 ELRELEQRVSLRRALLE------------QKIEEEMLALQNERTERIRSLLERQARE 218
Cdd:COG1196 437 EEEEEEALEEAAEEEAEleeeeeallellAELLEEAALLEAALAELLEELAEAAARL 493
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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