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Conserved domains on  [gi|505199743|ref|WP_015386845|]
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phage tail protein [Cronobacter sakazakii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
P2_Phage_GpR super family cl06104
P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion ...
 4-138 6.93e-23

P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion protein R (GpR) like sequences. GpR is thought to be a tail completion protein which is essential for stable head joining.


The actual alignment was detected with superfamily member pfam06891:

Pssm-ID: 429177  Cd Length: 131  Bit Score: 87.71  E-value: 6.93e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505199743    4 QLESLTEFFSENIPERARQ--GFDSVIDEMQVVPAakdmgLDQYRQALIRYNALLSWERFPYRlcpPQLLVSLLEVWLDE 81
Cdd:pfam06891   3 KPQSLRAALTAALPQLAANpdKLDVFVDEGSIVAT-----GAGSLSFEYRYTLVLIIEDYPGD---PDLLMAPVLAWLRE 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 505199743   82 YGSELMEHVGITDADPQWDVTVEDAETATVVLSVPLVEELVIRRDEKGAIPFRGERW 138
Cdd:pfam06891  75 NQPDLLANPDLRLKGITFDADILDDDTADLSISLQLTERVIVKEDEDGELTVTHLRE 131
 
Name Accession Description Interval E-value
P2_Phage_GpR pfam06891
P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion ...
 4-138 6.93e-23

P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion protein R (GpR) like sequences. GpR is thought to be a tail completion protein which is essential for stable head joining.


Pssm-ID: 429177  Cd Length: 131  Bit Score: 87.71  E-value: 6.93e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505199743    4 QLESLTEFFSENIPERARQ--GFDSVIDEMQVVPAakdmgLDQYRQALIRYNALLSWERFPYRlcpPQLLVSLLEVWLDE 81
Cdd:pfam06891   3 KPQSLRAALTAALPQLAANpdKLDVFVDEGSIVAT-----GAGSLSFEYRYTLVLIIEDYPGD---PDLLMAPVLAWLRE 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 505199743   82 YGSELMEHVGITDADPQWDVTVEDAETATVVLSVPLVEELVIRRDEKGAIPFRGERW 138
Cdd:pfam06891  75 NQPDLLANPDLRLKGITFDADILDDDTADLSISLQLTERVIVKEDEDGELTVTHLRE 131
 
Name Accession Description Interval E-value
P2_Phage_GpR pfam06891
P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion ...
 4-138 6.93e-23

P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion protein R (GpR) like sequences. GpR is thought to be a tail completion protein which is essential for stable head joining.


Pssm-ID: 429177  Cd Length: 131  Bit Score: 87.71  E-value: 6.93e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505199743    4 QLESLTEFFSENIPERARQ--GFDSVIDEMQVVPAakdmgLDQYRQALIRYNALLSWERFPYRlcpPQLLVSLLEVWLDE 81
Cdd:pfam06891   3 KPQSLRAALTAALPQLAANpdKLDVFVDEGSIVAT-----GAGSLSFEYRYTLVLIIEDYPGD---PDLLMAPVLAWLRE 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 505199743   82 YGSELMEHVGITDADPQWDVTVEDAETATVVLSVPLVEELVIRRDEKGAIPFRGERW 138
Cdd:pfam06891  75 NQPDLLANPDLRLKGITFDADILDDDTADLSISLQLTERVIVKEDEDGELTVTHLRE 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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