|
Name |
Accession |
Description |
Interval |
E-value |
| Nucleoporin2 |
pfam04096 |
Nucleoporin autopeptidase; The nuclear pore complex protein plays a role in bidirectional ... |
460-605 |
1.97e-66 |
|
Nucleoporin autopeptidase; The nuclear pore complex protein plays a role in bidirectional transport across the nucleoporin complex in nucleocytoplasmic transport. The mammalian nuclear pore complex (NPC) is comprised of approximately 30 unique proteins, collectively known as nucleoporins. This family includes yeast family members such as Nup145p as well as vertebrate Nup98. The NUP C-terminal domains of Nup98 and Nup145 possess peptidase S59 autoproteolytic activity. The autoproteolytic sites of Nup98 and Nup145 each occur immediately C-terminal to the NUP C-terminal domain. Thus, although this domain occurs in the middle of each precursor polypeptide, it winds up at the C-terminal end of the N-terminal cleavage product. Cleavage of the peptide chains are necessary for the proper targeting to the nuclear pore.
Pssm-ID: 461171 Cd Length: 143 Bit Score: 220.44 E-value: 1.97e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 460 GYWCSPSPEQLERLSLKQLAAVSNFVIGRRGYGCITFQHDVDLTAFtksFREELFGKIVIFRSsKTVEVYPDEATKPMIG 539
Cdd:pfam04096 3 DYWTSPSLEELKKMSREQLSSVENFTVGRKGYGSVRFLGPVDLTGL---DLDEIFGKIVKFEP-REVTVYPDESSKPPVG 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505271 540 HGLNVPAIITLENVYPVDKKTKKPMKDTTKfAEFQVFDRKLRSMREMNYISYNPFGGTWTFKVNHF 605
Cdd:pfam04096 79 QGLNVPATITLENVWPRDKDTKEPIKDPSG-PRLEKHIERLKRVQGTEFVSYDPETGTWTFKVEHF 143
|
|
| Nup96 |
pfam12110 |
Nuclear protein 96; Nup96 (often known by the name of its yeast homolog Nup145C) is part of ... |
898-1150 |
8.08e-35 |
|
Nuclear protein 96; Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex.
Pssm-ID: 463462 Cd Length: 287 Bit Score: 135.03 E-value: 8.08e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 898 EQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSnDPRIRDLAELQLQKWSTGG--CSIDKNISKIYKLLSGSP--FE 973
Cdd:pfam12110 1 EKAFALLTGHRVEEACELAIDSGDFRLATLLSQAGG-DDSFREDMAEQLDDWRESGvdSEIDEPRRKLYELLAGNVlvSE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 974 GLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFS--------LP------------------YDDPIGVI 1027
Cdd:pfam12110 80 GKKSTINISEGLDWKRAFGLRLWYGIPPDTSIEDAVEAYEEALSqgrepappLPwyleegdseswedprlkkREDLLYHL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 1028 FQLYAanENTEKLYKEVRQRT---NALDVQFCWYLIQTLR--FNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCF 1102
Cdd:pfam12110 160 LKLYA--DPTAPLEAVLDPESsspDPLDYRLSWHLYQVLSavRLGYGHLSSAKADQLTLSFASQLESLGLWQWAVFVLLH 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 505271 1103 LNDDKAAEDTIKRLVMREITLLRASTND--HILNRLKIPSQLIFNAQALK 1150
Cdd:pfam12110 238 LEDPARRERAVRELLARHAELISEDDAKerFLTEKLKIPEAWIHEAKALY 287
|
|
| Nucleoporin_FG |
pfam13634 |
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ... |
34-122 |
1.74e-17 |
|
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.
Pssm-ID: 463941 [Multi-domain] Cd Length: 90 Bit Score: 78.43 E-value: 1.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 34 PQKSTGLFGNvnvnaNTSTPSPSGGLFNANSNANsisQQPANNSLFGNK-PAQPSGGLFGATNNTTSKSA-GSLFGNNNA 111
Cdd:pfam13634 7 TSTSGGLFGN-----TSTTAASGGGLFGAASTAT---ATTSGGGLFGNSsSNAPSGGLFGATNTTTQTATgGGLFGNNAA 78
|
90
....*....|.
gi 505271 112 TANSTGSTGLF 122
Cdd:pfam13634 79 TTTSTTGGGLF 89
|
|
| Nucleoporin_FG |
pfam13634 |
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ... |
89-209 |
2.56e-16 |
|
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.
Pssm-ID: 463941 [Multi-domain] Cd Length: 90 Bit Score: 75.35 E-value: 2.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 89 GLFGATNNTTsksaGSLFGNNNATANSTGstGLFSGSNNIASSTQNGGLFGNsnnnnitsttqngglfgkpTTTPAGAGG 168
Cdd:pfam13634 1 GLFGAATSTS----GGLFGNTSTTAASGG--GLFGAASTATATTSGGGLFGN-------------------SSSNAPSGG 55
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 505271 169 LFGNSSSTNS---TTGLFGSNNTQSStgifgqkpgASTTGGLFG 209
Cdd:pfam13634 56 LFGATNTTTQtatGGGLFGNNAATTT---------STTGGGLFG 90
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
5-327 |
7.11e-09 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 60.56 E-value: 7.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPA 84
Cdd:COG4625 313 GGGGGGGGGGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGG 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 85 QPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGL-FGKPTTTP 163
Cdd:COG4625 393 GGGAGGGGGGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAgAGGGSGSG 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 164 AGAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFprsGETTGTMSTNPYGINISNVPMAVAD 243
Cdd:COG4625 473 AGTLTLTGNNTYTGTTTVNGGGNYTQSAGSTLAVEVDAANSDRLVVTGTATL---NGGTVVVLAGGYAPGTTYTILAVAA 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 244 -----MPRSITSSLSDVNGKSDAEpkpiENRRTY-SFSSSVSGNAPLPLASQSSLVSR-LSTRLKATQKSTSPNEIFSPS 316
Cdd:COG4625 550 aldalAGNGDLSALYNALAALDAA----AARAALdQLSGEIHASAAAALLQASRALRDaLSNRLRALRGAGAAGDAAAEG 625
|
330
....*....|.
gi 505271 317 YSkPWLNGAGS 327
Cdd:COG4625 626 WG-VWAQGFGS 635
|
|
| PPE |
COG5651 |
PPE-repeat protein [Function unknown]; |
5-206 |
1.40e-07 |
|
PPE-repeat protein [Function unknown];
Pssm-ID: 444372 [Multi-domain] Cd Length: 385 Bit Score: 55.28 E-value: 1.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNA-NTSTPSPSGGLFNANSNAN------SISQQPANNS 77
Cdd:COG5651 174 ITNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSgPIGLNSGPGNTGFAGTGAAagaaaaAAAAAAAAGA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 78 LFGNKPAQPSGGLFGATNNTTSKSAGSLFGNNNATANSTGST-GLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLF 156
Cdd:COG5651 254 GASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLaGGGAGAAAATGLGLGAGGAAGAAGATGAGAALGAGAA 333
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 505271 157 GKPTTTPAGAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGG 206
Cdd:COG5651 334 AAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGA 383
|
|
| dermokine |
cd21118 |
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a ... |
28-268 |
2.80e-05 |
|
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a skin-specific glycoprotein that may play a regulatory role in the crosstalk between barrier dysfunction and inflammation, and therefore play a role in inflammatory diseases such as psoriasis. Dermokine is one of the most highly expressed proteins in differentiating keratinocytes, found mainly in the spinous and granular layers of the epidermis, but also in the epithelia of the small intestine, macrophages of the lung, and endothelial cells of the lung. Mouse dermokine has been reported to be encoded by 22 exons, and its expression leads to alpha, beta, and gamma transcripts.
Pssm-ID: 411053 [Multi-domain] Cd Length: 495 Bit Score: 48.46 E-value: 2.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 28 SSSLQFPQKSTGLFGnVNVNANTSTPSPSGGLFNANSNANSISQQP------ANNSLFGNKPAQPSGGLFGATNNTTSKS 101
Cdd:cd21118 144 PGGTGGPWASGGNYG-TNSLGGSVGQGGNGGPLNYGTNSQGAVAQPgygtvrGNNQNSGCTNPPPSGSHESFSNSGGSSS 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 102 AGSLFGNNNATANSTGSTGlfsGSNNIASSTQNGGLFGNSNNNnitsttqnGGlfgkptttpaGAGGLFGNSSSTNSTTG 181
Cdd:cd21118 223 SGSSGSQGSHGSNGQGSSG---SSGGQGNGGNNGSSSSNSGNS--------GG----------SNGGSSGNSGSGSGGSS 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 182 LFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISNVPMAVADmprsITSSLSDVNGKSDA 261
Cdd:cd21118 282 SGGSNGWGGSSSSGGSGGSGGGNKPECNNPGNDVRMAGGGGSQGSKESSGSHGSNGGNGQAE----AVGGLNTLNSDAST 357
|
....*..
gi 505271 262 EPKPIEN 268
Cdd:cd21118 358 LPFNFDT 364
|
|
| holdfast_HfaD |
NF037936 |
holdfast anchor protein HfaD; |
43-212 |
4.87e-03 |
|
holdfast anchor protein HfaD;
Pssm-ID: 468280 [Multi-domain] Cd Length: 373 Bit Score: 40.94 E-value: 4.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 43 NVNVNANTS---TPSPSGGLFNANSNANSISQQPANNSLFGNKPAQPSGG---------LFGATNNTTSKSAGSlfGNNN 110
Cdd:NF037936 149 QADVLAEVGadvQYSPAPANFNATAVANAYQASSTNSSAQDLIVRQTNAAatvtartfvYYGNGWNIAANATAM--GNNL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 111 ATANSTGSTglfsgsnNIASSTQNGGLFGNSNNNNITsttqnggLFGKPTTTPAGAgglfGNSSSTNSTTGLFGSNNTQS 190
Cdd:NF037936 227 VLANQGGSL-------DVDGDQTNSSYVRAQAEVTSY-------DFGQAQITAYGV----GNSAMAGNNGIYLNLDNTQL 288
|
170 180
....*....|....*....|..
gi 505271 191 STGifgqkpGASTTGGLFGNNG 212
Cdd:NF037936 289 NTG------GVEALASFEGGNG 304
|
|
| ser_rich_anae_1 |
NF033849 |
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 ... |
87-281 |
7.73e-03 |
|
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 amino acids), which a highly serine-rich central region that averages over 300 aa in length. Species encoding members of this family of proteins tend to be anaerobic bacteria, including Gram-positive bacteria of the human gut microbiome and Chloroflexi from marine sediments.
Pssm-ID: 468206 [Multi-domain] Cd Length: 1122 Bit Score: 40.76 E-value: 7.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 87 SGGLFGATNNTTSKSAGSLFGNNNATANSTGStGLFSGSNNIASSTQNGGlfgnsnnNNITSTTQNGGLFGKPTTTPAGA 166
Cdd:NF033849 292 SESESTGQSSSVGTSESQSHGTTEGTSTTDSS-SHSQSSSYNVSSGTGVS-------SSHSDGTSQSTSISHSESSSEST 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 167 GglFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNN-GASFprsGETTGTMSTNPYGINISNVPMAVAdmp 245
Cdd:NF033849 364 G--TSVGHSTSSSVSSSESSSRSSSSGVSGGFSGGIAGGGVTSEGlGASQ---GGSEGWGSGDSVQSVSQSYGSSSS--- 435
|
170 180 190
....*....|....*....|....*....|....*.
gi 505271 246 RSITSSLSDVNGKSDaepkpienrrTYSFSSSVSGN 281
Cdd:NF033849 436 TGTSSGHSDSSSHST----------SSGQADSVSQG 461
|
|
| 34 |
PHA02584 |
long tail fiber, proximal subunit; Provisional |
3-243 |
7.83e-03 |
|
long tail fiber, proximal subunit; Provisional
Pssm-ID: 222890 [Multi-domain] Cd Length: 1229 Bit Score: 40.89 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 3 NKSVNSGFTFgNQNTSTptSTPAQPSSSLQFPqkstglfGNVNVNANTSTPSPSGGLFNANSNA--NSISQQPANNSLFG 80
Cdd:PHA02584 904 DQTVNGSLTF-TKNTNL--SAPLVSSSTATFG-------GSVTANSTLTTQNTSNGTVVVVDETsiAFYSQNNTTGNIVF 973
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 81 NKPaqpsgglfGATNNTTSKSAGSLFGNNNATANS--TGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTtqngglfgk 158
Cdd:PHA02584 974 NID--------GTVDPINVNANGTLNATGVATNGRavYAEGGGIARTNNAARAITGGFTIRNDGSTTVFLL--------- 1036
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 159 pTTTPAGAGGLFGNSSSTNSTTglfgSNNTQSSTGIFGQKPGASTTGGLFGNNGAsfpRSGETTGTMSTNPYGINISNVP 238
Cdd:PHA02584 1037 -TAAGDQTGGFNGLKSLIINNA----NGQVTINDNYIINAGGTIMSGGLTVNSRI---RSQGTKASYTRAPTADTVGFWS 1108
|
....*
gi 505271 239 MAVAD 243
Cdd:PHA02584 1109 VDIND 1113
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Nucleoporin2 |
pfam04096 |
Nucleoporin autopeptidase; The nuclear pore complex protein plays a role in bidirectional ... |
460-605 |
1.97e-66 |
|
Nucleoporin autopeptidase; The nuclear pore complex protein plays a role in bidirectional transport across the nucleoporin complex in nucleocytoplasmic transport. The mammalian nuclear pore complex (NPC) is comprised of approximately 30 unique proteins, collectively known as nucleoporins. This family includes yeast family members such as Nup145p as well as vertebrate Nup98. The NUP C-terminal domains of Nup98 and Nup145 possess peptidase S59 autoproteolytic activity. The autoproteolytic sites of Nup98 and Nup145 each occur immediately C-terminal to the NUP C-terminal domain. Thus, although this domain occurs in the middle of each precursor polypeptide, it winds up at the C-terminal end of the N-terminal cleavage product. Cleavage of the peptide chains are necessary for the proper targeting to the nuclear pore.
Pssm-ID: 461171 Cd Length: 143 Bit Score: 220.44 E-value: 1.97e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 460 GYWCSPSPEQLERLSLKQLAAVSNFVIGRRGYGCITFQHDVDLTAFtksFREELFGKIVIFRSsKTVEVYPDEATKPMIG 539
Cdd:pfam04096 3 DYWTSPSLEELKKMSREQLSSVENFTVGRKGYGSVRFLGPVDLTGL---DLDEIFGKIVKFEP-REVTVYPDESSKPPVG 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505271 540 HGLNVPAIITLENVYPVDKKTKKPMKDTTKfAEFQVFDRKLRSMREMNYISYNPFGGTWTFKVNHF 605
Cdd:pfam04096 79 QGLNVPATITLENVWPRDKDTKEPIKDPSG-PRLEKHIERLKRVQGTEFVSYDPETGTWTFKVEHF 143
|
|
| Nup96 |
pfam12110 |
Nuclear protein 96; Nup96 (often known by the name of its yeast homolog Nup145C) is part of ... |
898-1150 |
8.08e-35 |
|
Nuclear protein 96; Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex.
Pssm-ID: 463462 Cd Length: 287 Bit Score: 135.03 E-value: 8.08e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 898 EQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSnDPRIRDLAELQLQKWSTGG--CSIDKNISKIYKLLSGSP--FE 973
Cdd:pfam12110 1 EKAFALLTGHRVEEACELAIDSGDFRLATLLSQAGG-DDSFREDMAEQLDDWRESGvdSEIDEPRRKLYELLAGNVlvSE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 974 GLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFS--------LP------------------YDDPIGVI 1027
Cdd:pfam12110 80 GKKSTINISEGLDWKRAFGLRLWYGIPPDTSIEDAVEAYEEALSqgrepappLPwyleegdseswedprlkkREDLLYHL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 1028 FQLYAanENTEKLYKEVRQRT---NALDVQFCWYLIQTLR--FNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCF 1102
Cdd:pfam12110 160 LKLYA--DPTAPLEAVLDPESsspDPLDYRLSWHLYQVLSavRLGYGHLSSAKADQLTLSFASQLESLGLWQWAVFVLLH 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 505271 1103 LNDDKAAEDTIKRLVMREITLLRASTND--HILNRLKIPSQLIFNAQALK 1150
Cdd:pfam12110 238 LEDPARRERAVRELLARHAELISEDDAKerFLTEKLKIPEAWIHEAKALY 287
|
|
| Nucleoporin_FG |
pfam13634 |
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ... |
34-122 |
1.74e-17 |
|
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.
Pssm-ID: 463941 [Multi-domain] Cd Length: 90 Bit Score: 78.43 E-value: 1.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 34 PQKSTGLFGNvnvnaNTSTPSPSGGLFNANSNANsisQQPANNSLFGNK-PAQPSGGLFGATNNTTSKSA-GSLFGNNNA 111
Cdd:pfam13634 7 TSTSGGLFGN-----TSTTAASGGGLFGAASTAT---ATTSGGGLFGNSsSNAPSGGLFGATNTTTQTATgGGLFGNNAA 78
|
90
....*....|.
gi 505271 112 TANSTGSTGLF 122
Cdd:pfam13634 79 TTTSTTGGGLF 89
|
|
| Nucleoporin_FG |
pfam13634 |
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ... |
39-139 |
1.98e-17 |
|
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.
Pssm-ID: 463941 [Multi-domain] Cd Length: 90 Bit Score: 78.43 E-value: 1.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 39 GLFGnvnvnantSTPSPSGGLFNANSNansisQQPANNSLFG----NKPAQPSGGLFGATNNTTskSAGSLFGNNNATAN 114
Cdd:pfam13634 1 GLFG--------AATSTSGGLFGNTST-----TAASGGGLFGaastATATTSGGGLFGNSSSNA--PSGGLFGATNTTTQ 65
|
90 100
....*....|....*....|....*
gi 505271 115 STGSTGLFSGSNNIASSTQNGGLFG 139
Cdd:pfam13634 66 TATGGGLFGNNAATTTSTTGGGLFG 90
|
|
| Nucleoporin_FG |
pfam13634 |
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ... |
89-209 |
2.56e-16 |
|
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.
Pssm-ID: 463941 [Multi-domain] Cd Length: 90 Bit Score: 75.35 E-value: 2.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 89 GLFGATNNTTsksaGSLFGNNNATANSTGstGLFSGSNNIASSTQNGGLFGNsnnnnitsttqngglfgkpTTTPAGAGG 168
Cdd:pfam13634 1 GLFGAATSTS----GGLFGNTSTTAASGG--GLFGAASTATATTSGGGLFGN-------------------SSSNAPSGG 55
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 505271 169 LFGNSSSTNS---TTGLFGSNNTQSStgifgqkpgASTTGGLFG 209
Cdd:pfam13634 56 LFGATNTTTQtatGGGLFGNNAATTT---------STTGGGLFG 90
|
|
| Nucleoporin_FG |
pfam13634 |
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ... |
70-171 |
2.75e-14 |
|
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.
Pssm-ID: 463941 [Multi-domain] Cd Length: 90 Bit Score: 69.57 E-value: 2.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 70 SQQPANNSLFGNKPAQP--SGGLFGATNNTTSK-SAGSLFGNNNATansTGSTGLFSGSNNIASSTQNGGLFGNsnnnni 146
Cdd:pfam13634 5 AATSTSGGLFGNTSTTAasGGGLFGAASTATATtSGGGLFGNSSSN---APSGGLFGATNTTTQTATGGGLFGN------ 75
|
90 100
....*....|....*....|....*
gi 505271 147 tsttqngglfGKPTTTPAGAGGLFG 171
Cdd:pfam13634 76 ----------NAATTTSTTGGGLFG 90
|
|
| Nucleoporin_FG |
pfam13634 |
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ... |
154-214 |
9.61e-12 |
|
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.
Pssm-ID: 463941 [Multi-domain] Cd Length: 90 Bit Score: 62.25 E-value: 9.61e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505271 154 GLFGKPTTTpagAGGLFGNSSSTNSTT-GLFGSNNTQSST----GIFGQKPGASTTGGLFGNNGAS 214
Cdd:pfam13634 1 GLFGAATST---SGGLFGNTSTTAASGgGLFGAASTATATtsggGLFGNSSSNAPSGGLFGATNTT 63
|
|
| Nucleoporin_FG |
pfam13634 |
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ... |
3-80 |
5.45e-09 |
|
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.
Pssm-ID: 463941 [Multi-domain] Cd Length: 90 Bit Score: 54.54 E-value: 5.45e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505271 3 NKSVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNvnvNANTSTPSPSGGLFNANSNANsisQQPANNSLFG 80
Cdd:pfam13634 19 TTAASGGGLFGAASTATATTSGGGLFGNSSSNAPSGGLFGA---TNTTTQTATGGGLFGNNAATT---TSTTGGGLFG 90
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
5-327 |
7.11e-09 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 60.56 E-value: 7.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPA 84
Cdd:COG4625 313 GGGGGGGGGGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGG 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 85 QPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGL-FGKPTTTP 163
Cdd:COG4625 393 GGGAGGGGGGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAgAGGGSGSG 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 164 AGAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFprsGETTGTMSTNPYGINISNVPMAVAD 243
Cdd:COG4625 473 AGTLTLTGNNTYTGTTTVNGGGNYTQSAGSTLAVEVDAANSDRLVVTGTATL---NGGTVVVLAGGYAPGTTYTILAVAA 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 244 -----MPRSITSSLSDVNGKSDAEpkpiENRRTY-SFSSSVSGNAPLPLASQSSLVSR-LSTRLKATQKSTSPNEIFSPS 316
Cdd:COG4625 550 aldalAGNGDLSALYNALAALDAA----AARAALdQLSGEIHASAAAALLQASRALRDaLSNRLRALRGAGAAGDAAAEG 625
|
330
....*....|.
gi 505271 317 YSkPWLNGAGS 327
Cdd:COG4625 626 WG-VWAQGFGS 635
|
|
| PPE |
COG5651 |
PPE-repeat protein [Function unknown]; |
5-206 |
1.40e-07 |
|
PPE-repeat protein [Function unknown];
Pssm-ID: 444372 [Multi-domain] Cd Length: 385 Bit Score: 55.28 E-value: 1.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNA-NTSTPSPSGGLFNANSNAN------SISQQPANNS 77
Cdd:COG5651 174 ITNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSgPIGLNSGPGNTGFAGTGAAagaaaaAAAAAAAAGA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 78 LFGNKPAQPSGGLFGATNNTTSKSAGSLFGNNNATANSTGST-GLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLF 156
Cdd:COG5651 254 GASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLaGGGAGAAAATGLGLGAGGAAGAAGATGAGAALGAGAA 333
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 505271 157 GKPTTTPAGAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGG 206
Cdd:COG5651 334 AAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGA 383
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
6-298 |
3.26e-07 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 55.17 E-value: 3.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 6 VNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPAQ 85
Cdd:COG4625 218 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGG 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 86 PSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTTPAG 165
Cdd:COG4625 298 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGS 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 166 AGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISNVPMAVADMP 245
Cdd:COG4625 378 GGGGAGGGGGSGGGGGGGAGGGGGGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAG 457
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 505271 246 RSITSSLSDVNGKSDAEPKPIENRRTYSFSSSVSGNAPLPLASQSSLVSRLST 298
Cdd:COG4625 458 GSGGGAGAGGGSGSGAGTLTLTGNNTYTGTTTVNGGGNYTQSAGSTLAVEVDA 510
|
|
| Nucleoporin_FG2 |
pfam15967 |
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ... |
8-238 |
3.77e-07 |
|
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.
Pssm-ID: 435043 [Multi-domain] Cd Length: 586 Bit Score: 54.67 E-value: 3.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 8 SGFTFGNQNTSTPT---------STPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFnansnansiSQQPANNSL 78
Cdd:pfam15967 2 SGFSFGGGPGSTATagggfsfgaAAASNPGSTGGFSFGTLGAAPAATATTTTATLGLGGGLF---------GQKPATGFT 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 79 FGN-----KPAQPSGGLFGATNNTTSKSAGSLFGNNNATANSTGstglFSGSnniASSTQNGGL-FGNSNNNNITSTTQN 152
Cdd:pfam15967 73 FGTpasstAATGPTGLTLGTPAATTAASTGFSLGFNKPAASATP----FSLP---ASSTSGGGLsLGSVLTSTAAQQGAT 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 153 G---GLFGKPTTTPAGA-------------GGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGL-FGNngASF 215
Cdd:pfam15967 146 GftlNLGGTPATTTAVStglslgstltslgGSLFQNTNSTGLGQTTLGLTLLATSTAPVSAPAASEGLGGLdFST--SSE 223
|
250 260
....*....|....*....|...
gi 505271 216 PRSGETTGTMSTNPYGINISNVP 238
Cdd:pfam15967 224 KKSDKASGTRPEDSKALKDENLP 246
|
|
| COG4935 |
COG4935 |
Regulatory P domain of the subtilisin-like proprotein convertases and other proteases ... |
6-253 |
3.00e-06 |
|
Regulatory P domain of the subtilisin-like proprotein convertases and other proteases [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443962 [Multi-domain] Cd Length: 641 Bit Score: 51.75 E-value: 3.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 6 VNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPAQ 85
Cdd:COG4935 306 GNAAAAAAASAGSGGGGGSAAAAGAAAAAAAAAAGAAAGVSGAASVVAGASGGGAGTAAAAGGGAAAAAAGGAAAAGAAA 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 86 PSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGlfgkPTTTPAG 165
Cdd:COG4935 386 GAAAGAAAGAAAAGGVASAAGAVGAGTAAGASATAAVSTGAASGSSTTSSTGTTATATGLGGGADAGST----STGTGSA 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 166 AGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISNVPMAVADMP 245
Cdd:COG4935 462 AGAAGGTTTATSGLASSTTAAAAAAAAGLATTAAVAAGAAGAAAAAATAASVGGATGAAGTTNSTATFSNTTDVAIPDNG 541
|
....*....
gi 505271 246 RS-ITSSLS 253
Cdd:COG4935 542 PAgVTSTIT 550
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
17-309 |
1.02e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 49.91 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 17 TSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPsgglfNANSNANSISQQPANNSLFGNKPAQPSGGLFGATNN 96
Cdd:pfam05109 515 TPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTP-----NATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTPN 589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 97 TTSKSAGSLFGNNNATANSTGST---------------GLFSGSNNI-ASSTQNGGLFGNSNNNNITSTTQNGGLFGKPT 160
Cdd:pfam05109 590 ATSPTVGETSPQANTTNHTLGGTsstpvvtsppknatsAVTTGQHNItSSSTSSMSLRPSSISETLSPSTSDNSTSHMPL 669
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 161 TTPAGAGGLFGNSSSTNSTTglfgsNNTQSSTGIFGQKPGASTTGGLFGNNGASfPRSGETTGTMSTNPYGINISNVPMA 240
Cdd:pfam05109 670 LTSAHPTGGENITQVTPAST-----STHHVSTSSPAPRPGTTSQASGPGNSSTS-TKPGEVNVTKGTPPKNATSPQAPSG 743
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505271 241 VADMPRSITSSLSDVNGKSDAEPKPIENRRTYSF-SSSVSGNAPLPLA---SQSSLVSRLSTRLKATQKSTSP 309
Cdd:pfam05109 744 QKTAVPTVTSTGGKANSTTGGKHTTGHGARTSTEpTTDYGGDSTTPRTrynATTYLPPSTSSKLRPRWTFTSP 816
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
5-215 |
2.10e-05 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 49.01 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQpANNSLFGNKPA 84
Cdd:COG4625 287 SGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGG-AGGGGGGGTGG 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 85 QPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTTPA 164
Cdd:COG4625 366 GGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGGGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGA 445
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 505271 165 GAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASF 215
Cdd:COG4625 446 TGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGNNTYTGTTTVNGGGNY 496
|
|
| Nucleoporin_FG2 |
pfam15967 |
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ... |
1-133 |
2.26e-05 |
|
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.
Pssm-ID: 435043 [Multi-domain] Cd Length: 586 Bit Score: 48.90 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 1 MFNKSVNSGFTFGNQNTSTPTS--------TPAQPSSSlqfpqkSTGLFGNVNVNANTSTP------SPSGGLFNANSNA 66
Cdd:pfam15967 62 LFGQKPATGFTFGTPASSTAATgptgltlgTPAATTAA------STGFSLGFNKPAASATPfslpasSTSGGGLSLGSVL 135
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505271 67 NSISQQPANNSL---FGNKPAQPSGGLFGATNNTTSKS-AGSLFGNNNATANSTGSTGLFSGSNNIASSTQ 133
Cdd:pfam15967 136 TSTAAQQGATGFtlnLGGTPATTTAVSTGLSLGSTLTSlGGSLFQNTNSTGLGQTTLGLTLLATSTAPVSA 206
|
|
| dermokine |
cd21118 |
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a ... |
28-268 |
2.80e-05 |
|
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a skin-specific glycoprotein that may play a regulatory role in the crosstalk between barrier dysfunction and inflammation, and therefore play a role in inflammatory diseases such as psoriasis. Dermokine is one of the most highly expressed proteins in differentiating keratinocytes, found mainly in the spinous and granular layers of the epidermis, but also in the epithelia of the small intestine, macrophages of the lung, and endothelial cells of the lung. Mouse dermokine has been reported to be encoded by 22 exons, and its expression leads to alpha, beta, and gamma transcripts.
Pssm-ID: 411053 [Multi-domain] Cd Length: 495 Bit Score: 48.46 E-value: 2.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 28 SSSLQFPQKSTGLFGnVNVNANTSTPSPSGGLFNANSNANSISQQP------ANNSLFGNKPAQPSGGLFGATNNTTSKS 101
Cdd:cd21118 144 PGGTGGPWASGGNYG-TNSLGGSVGQGGNGGPLNYGTNSQGAVAQPgygtvrGNNQNSGCTNPPPSGSHESFSNSGGSSS 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 102 AGSLFGNNNATANSTGSTGlfsGSNNIASSTQNGGLFGNSNNNnitsttqnGGlfgkptttpaGAGGLFGNSSSTNSTTG 181
Cdd:cd21118 223 SGSSGSQGSHGSNGQGSSG---SSGGQGNGGNNGSSSSNSGNS--------GG----------SNGGSSGNSGSGSGGSS 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 182 LFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISNVPMAVADmprsITSSLSDVNGKSDA 261
Cdd:cd21118 282 SGGSNGWGGSSSSGGSGGSGGGNKPECNNPGNDVRMAGGGGSQGSKESSGSHGSNGGNGQAE----AVGGLNTLNSDAST 357
|
....*..
gi 505271 262 EPKPIEN 268
Cdd:cd21118 358 LPFNFDT 364
|
|
| COG4935 |
COG4935 |
Regulatory P domain of the subtilisin-like proprotein convertases and other proteases ... |
37-279 |
8.85e-05 |
|
Regulatory P domain of the subtilisin-like proprotein convertases and other proteases [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443962 [Multi-domain] Cd Length: 641 Bit Score: 46.74 E-value: 8.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 37 STGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPAQPSGGLFGATNNTTSKSAGSLFGNNNATANST 116
Cdd:COG4935 301 GAAGTGNAAAAAAASAGSGGGGGSAAAAGAAAAAAAAAAGAAAGVSGAASVVAGASGGGAGTAAAAGGGAAAAAAGGAAA 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 117 GSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTTPAGAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFG 196
Cdd:COG4935 381 AGAAAGAAAGAAAGAAAAGGVASAAGAVGAGTAAGASATAAVSTGAASGSSTTSSTGTTATATGLGGGADAGSTSTGTGS 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 197 QKPGA-------STTGGLFGNNGASFPRSGETTGTMSTNPYGINISNVPMAVADMPRSITSSLSDVNGKSDAEPKPIENR 269
Cdd:COG4935 461 AAGAAggtttatSGLASSTTAAAAAAAAGLATTAAVAAGAAGAAAAAATAASVGGATGAAGTTNSTATFSNTTDVAIPDN 540
|
250
....*....|
gi 505271 270 RTYSFSSSVS 279
Cdd:COG4935 541 GPAGVTSTIT 550
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
5-236 |
2.43e-04 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 45.91 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFpqkSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPA 84
Cdd:COG3210 506 DANGIATGLTGITAGGGGGGNATSGGTGG---DGTTLSGSGLTTTVSGGASGTTAASGSNTANTLGVLAATGGTSNATTA 582
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 85 QPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTTPA 164
Cdd:COG3210 583 GNSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTT 662
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505271 165 GAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISN 236
Cdd:COG3210 663 GVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTGQIGALANANGDTVTFGN 734
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
7-257 |
2.85e-04 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 45.53 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 7 NSGFTFGNQNTSTPTSTPAQPSSSLQfpqkSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPAQP 86
Cdd:COG3210 763 ANTTASGTTLTLANANGNTSAGATLD----NAGAEISIDITADGTITAAGTTAINVTGSGGTITINTATTGLTGTGDTTS 838
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 87 SGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTTPAGA 166
Cdd:COG3210 839 GAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTA 918
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 167 GGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISNVPMAVADMPR 246
Cdd:COG3210 919 TGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILV 998
|
250
....*....|.
gi 505271 247 SITSSLSDVNG 257
Cdd:COG3210 999 AGNSGTTASTT 1009
|
|
| PPE |
COG5651 |
PPE-repeat protein [Function unknown]; |
83-242 |
1.10e-03 |
|
PPE-repeat protein [Function unknown];
Pssm-ID: 444372 [Multi-domain] Cd Length: 385 Bit Score: 42.96 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 83 PAQP---SGGLFGATN-NTTSKSAGSLFGNNNATA-NSTGSTGLFSGSNNIA--SSTQNGGLFGNSNNNNITSTTQNGGL 155
Cdd:COG5651 170 PPPTitnPGGLLGAQNaGSGNTSSNPGFANLGLTGlNQVGIGGLNSGSGPIGlnSGPGNTGFAGTGAAAGAAAAAAAAAA 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 156 FGKPTTTPAGAGGLFGnssSTNSTTGLFGSNNTQSSTGIFGqkPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINIS 235
Cdd:COG5651 250 AAGAGASAALASLAAT---LLNASSLGLAATAASSAATNLG--LAGSPLGLAGGGAGAAAATGLGLGAGGAAGAAGATGA 324
|
....*..
gi 505271 236 NVPMAVA 242
Cdd:COG5651 325 GAALGAG 331
|
|
| COG4935 |
COG4935 |
Regulatory P domain of the subtilisin-like proprotein convertases and other proteases ... |
5-192 |
1.23e-03 |
|
Regulatory P domain of the subtilisin-like proprotein convertases and other proteases [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443962 [Multi-domain] Cd Length: 641 Bit Score: 43.27 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPA 84
Cdd:COG4935 359 GAGTAAAAGGGAAAAAAGGAAAAGAAAGAAAGAAAGAAAAGGVASAAGAVGAGTAAGASATAAVSTGAASGSSTTSSTGT 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 85 QPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTTPA 164
Cdd:COG4935 439 TATATGLGGGADAGSTSTGTGSAAGAAGGTTTATSGLASSTTAAAAAAAAGLATTAAVAAGAAGAAAAAATAASVGGATG 518
|
170 180 190
....*....|....*....|....*....|
gi 505271 165 GAGGLFGNSSSTNSTTGLFGSNNTQ--SST 192
Cdd:COG4935 519 AAGTTNSTATFSNTTDVAIPDNGPAgvTST 548
|
|
| COG3979 |
COG3979 |
Chitodextrinase [Carbohydrate transport and metabolism]; |
3-231 |
3.81e-03 |
|
Chitodextrinase [Carbohydrate transport and metabolism];
Pssm-ID: 443178 [Multi-domain] Cd Length: 369 Bit Score: 41.30 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 3 NKSVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANN--SLFG 80
Cdd:COG3979 76 NVSAASGTSTAMFGGSSTTLGSAEGVADTSGNLAASGAFFGVTTPPTPSSTLVVDGTTTVNAAATANGGTGGSGgtTTII 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 81 NKPAQPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPT 160
Cdd:COG3979 156 TTGVEGGGGSKTAQSLNAITAAGTAALNGGVVGGADEVLTCSAVKDDGSGGAGAGNTYWALNTLGVSDTPSGTTATGGTV 235
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505271 161 TTPAGAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYG 231
Cdd:COG3979 236 GITSAYGAGVSGNAAVNVNAGFVVGNVGGAAGNTGTTSGTATSDAATNDVGDAAVTGLNDGAANGPTGGYG 306
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
5-237 |
4.28e-03 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 41.68 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGG---LFNANSNANSISQQPANNSLFGN 81
Cdd:COG3210 665 NTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTGQigaLANANGDTVTFGNLGTGATLTLN 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 82 KPAQPSGGLFGA---TNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLfgk 158
Cdd:COG3210 745 AGVTITSGNAGTlsiGLTANTTASGTTLTLANANGNTSAGATLDNAGAEISIDITADGTITAAGTTAINVTGSGGTI--- 821
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505271 159 pTTTPAGAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISNV 237
Cdd:COG3210 822 -TINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNL 899
|
|
| holdfast_HfaD |
NF037936 |
holdfast anchor protein HfaD; |
43-212 |
4.87e-03 |
|
holdfast anchor protein HfaD;
Pssm-ID: 468280 [Multi-domain] Cd Length: 373 Bit Score: 40.94 E-value: 4.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 43 NVNVNANTS---TPSPSGGLFNANSNANSISQQPANNSLFGNKPAQPSGG---------LFGATNNTTSKSAGSlfGNNN 110
Cdd:NF037936 149 QADVLAEVGadvQYSPAPANFNATAVANAYQASSTNSSAQDLIVRQTNAAatvtartfvYYGNGWNIAANATAM--GNNL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 111 ATANSTGSTglfsgsnNIASSTQNGGLFGNSNNNNITsttqnggLFGKPTTTPAGAgglfGNSSSTNSTTGLFGSNNTQS 190
Cdd:NF037936 227 VLANQGGSL-------DVDGDQTNSSYVRAQAEVTSY-------DFGQAQITAYGV----GNSAMAGNNGIYLNLDNTQL 288
|
170 180
....*....|....*....|..
gi 505271 191 STGifgqkpGASTTGGLFGNNG 212
Cdd:NF037936 289 NTG------GVEALASFEGGNG 304
|
|
| ser_rich_anae_1 |
NF033849 |
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 ... |
87-281 |
7.73e-03 |
|
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 amino acids), which a highly serine-rich central region that averages over 300 aa in length. Species encoding members of this family of proteins tend to be anaerobic bacteria, including Gram-positive bacteria of the human gut microbiome and Chloroflexi from marine sediments.
Pssm-ID: 468206 [Multi-domain] Cd Length: 1122 Bit Score: 40.76 E-value: 7.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 87 SGGLFGATNNTTSKSAGSLFGNNNATANSTGStGLFSGSNNIASSTQNGGlfgnsnnNNITSTTQNGGLFGKPTTTPAGA 166
Cdd:NF033849 292 SESESTGQSSSVGTSESQSHGTTEGTSTTDSS-SHSQSSSYNVSSGTGVS-------SSHSDGTSQSTSISHSESSSEST 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 167 GglFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNN-GASFprsGETTGTMSTNPYGINISNVPMAVAdmp 245
Cdd:NF033849 364 G--TSVGHSTSSSVSSSESSSRSSSSGVSGGFSGGIAGGGVTSEGlGASQ---GGSEGWGSGDSVQSVSQSYGSSSS--- 435
|
170 180 190
....*....|....*....|....*....|....*.
gi 505271 246 RSITSSLSDVNGKSDaepkpienrrTYSFSSSVSGN 281
Cdd:NF033849 436 TGTSSGHSDSSSHST----------SSGQADSVSQG 461
|
|
| 34 |
PHA02584 |
long tail fiber, proximal subunit; Provisional |
3-243 |
7.83e-03 |
|
long tail fiber, proximal subunit; Provisional
Pssm-ID: 222890 [Multi-domain] Cd Length: 1229 Bit Score: 40.89 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 3 NKSVNSGFTFgNQNTSTptSTPAQPSSSLQFPqkstglfGNVNVNANTSTPSPSGGLFNANSNA--NSISQQPANNSLFG 80
Cdd:PHA02584 904 DQTVNGSLTF-TKNTNL--SAPLVSSSTATFG-------GSVTANSTLTTQNTSNGTVVVVDETsiAFYSQNNTTGNIVF 973
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 81 NKPaqpsgglfGATNNTTSKSAGSLFGNNNATANS--TGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTtqngglfgk 158
Cdd:PHA02584 974 NID--------GTVDPINVNANGTLNATGVATNGRavYAEGGGIARTNNAARAITGGFTIRNDGSTTVFLL--------- 1036
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271 159 pTTTPAGAGGLFGNSSSTNSTTglfgSNNTQSSTGIFGQKPGASTTGGLFGNNGAsfpRSGETTGTMSTNPYGINISNVP 238
Cdd:PHA02584 1037 -TAAGDQTGGFNGLKSLIINNA----NGQVTINDNYIINAGGTIMSGGLTVNSRI---RSQGTKASYTRAPTADTVGFWS 1108
|
....*
gi 505271 239 MAVAD 243
Cdd:PHA02584 1109 VDIND 1113
|
|
|