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Conserved domains on  [gi|50812166|ref|YP_054537|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Thermobia domestica]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009588)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 2.70e-47

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 147.70  E-value: 2.70e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    1 MNTVLTTGLLTIIICLIVMTISTLLSKKVINDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTIT 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 50812166   81 INNTNTLSWSLVSLVFLVILLMGLYHEWNQGSLTWA 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 2.70e-47

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 147.70  E-value: 2.70e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    1 MNTVLTTGLLTIIICLIVMTISTLLSKKVINDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTIT 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 50812166   81 INNTNTLSWSLVSLVFLVILLMGLYHEWNQGSLTWA 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-113 1.53e-28

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 99.42  E-value: 1.53e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    19 MTISTLLSKKVINdREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTITINNtNTLSWSLVSLVFLV 98
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRE-LGWFGFVEMLIFIA 78

                          90
                  ....*....|....*
gi 50812166    99 ILLMGLYHEWNQGSL 113
Cdd:pfam00507  79 ILLVGLVYAWKKGAL 93
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-115 1.22e-26

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 95.19  E-value: 1.22e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166   4 VLTTGLLTIIICLIVMTISTLLSKKViNDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTITINN 83
Cdd:COG0838   8 ILIFLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRE 86

                        90       100       110
                ....*....|....*....|....*....|..
gi 50812166  84 TNTLSWSLVsLVFLVILLMGLYHEWNQGSLTW 115
Cdd:COG0838  87 LGWFGLIEM-LVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 2.70e-47

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 147.70  E-value: 2.70e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    1 MNTVLTTGLLTIIICLIVMTISTLLSKKVINDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTIT 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 50812166   81 INNTNTLSWSLVSLVFLVILLMGLYHEWNQGSLTWA 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 9-115 3.25e-47

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 147.23  E-value: 3.25e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    9 LLTIIICLIVMTISTLLSKKVINDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTITINNTNTLS 88
Cdd:MTH00161   7 LIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMS 86

                         90       100
                 ....*....|....*....|....*..
gi 50812166   89 WSLVSLVFLVILLMGLYHEWNQGSLTW 115
Cdd:MTH00161  87 WLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 7.51e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 128.57  E-value: 7.51e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    1 MNTVLTTGLLTIIICLIVMTISTLLSKKVINDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTIT 80
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 50812166   81 INNTNTLSWSLVSLVFLVILLMGLYHEWNQGSLTWA 116
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 1.25e-33

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 113.03  E-value: 1.25e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    1 MNTVLTTGLLTIIICLIVMTISTLLSKKVINDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTIT 80
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 50812166   81 INNTNTLSWSLVSLVFLVILLMGLYHEWNQGSLTWA 116
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-117 2.32e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 109.62  E-value: 2.32e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    1 MNTVLTTGLLTIIICLIVMTISTLLSKkVINDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPM--- 77
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQ-MTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLpwg 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 50812166   78 TITINNTNTLSWSlvSLVfLVILLMGLYHEWNQGSLTWAD 117
Cdd:MTH00136  80 DQLPSPLLTFFWA--TAV-LILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-117 4.72e-31

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 106.22  E-value: 4.72e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    1 MNTVLTTGLLTIIICLIVMTISTLLSKKVInDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTIT 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSP-DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 50812166   81 INNTNTLSWSLVSLVFLVILLMGLYHEWNQGSLTWAD 117
Cdd:MTH00042  80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-116 3.20e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 101.50  E-value: 3.20e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    2 NTVLTTGLLTIIICLIVMTISTLLSKKViNDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTITI 81
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTK-PDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 50812166   82 NNTNTLSWSLVSLVFLVILLMGLYHEWNQGSLTWA 116
Cdd:MTH00113  80 NLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 4-117 6.64e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 100.84  E-value: 6.64e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    4 VLTTGLLTIIICLIVMTISTLLSkkVIN-DREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPM---TI 79
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLP--LNNpDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQ 79

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 50812166   80 TINNTNTLSWslvSLVFLVILLMGLYHEWNQGSLTWAD 117
Cdd:MTH00069  80 LNTPTNTLFW---STLILILLTLGLIYEWIQGGLEWAE 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-113 1.53e-28

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 99.42  E-value: 1.53e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    19 MTISTLLSKKVINdREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTITINNtNTLSWSLVSLVFLV 98
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRE-LGWFGFVEMLIFIA 78

                          90
                  ....*....|....*
gi 50812166    99 ILLMGLYHEWNQGSL 113
Cdd:pfam00507  79 ILLVGLVYAWKKGAL 93
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-117 4.89e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 98.86  E-value: 4.89e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    1 MNTVLTTgLLTIIICLIVMTISTLLSKKVINdREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTIT 80
Cdd:MTH00106   1 MNLMLTL-LTNTLLASLLVLIAFWLPQLNIY-SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 50812166   81 INNTNTLSWSLVSLVFLVILLMGLYHEWNQGSLTWAD 117
Cdd:MTH00106  79 SQTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 2.33e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 96.89  E-value: 2.33e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    1 MNTVLTTGLLTIIICLIVMTIStLLSKKVINDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTIT 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIA-FWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 50812166   81 iNNTNTLSWSLVSLvFLVILLMGLYHEWNQGSLTW 115
Cdd:MTH00203  80 -NQLSSLSLLLAFL-FLILLTLGLIYEWLQGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-115 1.22e-26

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 95.19  E-value: 1.22e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166   4 VLTTGLLTIIICLIVMTISTLLSKKViNDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTITINN 83
Cdd:COG0838   8 ILIFLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRE 86

                        90       100       110
                ....*....|....*....|....*....|..
gi 50812166  84 TNTLSWSLVsLVFLVILLMGLYHEWNQGSLTW 115
Cdd:COG0838  87 LGWFGLIEM-LVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 9-116 4.45e-25

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 91.46  E-value: 4.45e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    9 LLTIIICLIVMTISTLLSKKViNDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTITINNTNTLS 88
Cdd:PRK06602  16 IVAIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWLG 94

                         90       100
                 ....*....|....*....|....*....
gi 50812166   89 -WSLvsLVFLVILLMGLYHEWNQGSLTWA 116
Cdd:PRK06602  95 fVEA--MIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 9-115 2.75e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 83.96  E-value: 2.75e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    9 LLTIIICLIVMTISTLLSKKvINDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTITINNTNTLS 88
Cdd:MTH00018   8 IFSVVLSALFSGASYFLGVK-QPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFG 86

                         90       100
                 ....*....|....*....|....*..
gi 50812166   89 WSLVsLVFLVILLMGLYHEWNQGSLTW 115
Cdd:MTH00018  87 FWTM-VGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 9-115 7.99e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 82.84  E-value: 7.99e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    9 LLTIIICLIVMTISTLLSKKViNDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTITINNTNTLS 88
Cdd:MTH00055  13 LFSIGLSTVISGASYIVGVKQ-PDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFG 91

                         90       100
                 ....*....|....*....|....*..
gi 50812166   89 WsLVSLVFLVILLMGLYHEWNQGSLTW 115
Cdd:MTH00055  92 F-WVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 3-115 2.41e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 79.59  E-value: 2.41e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    3 TVLTTGLLTIIICLIVMTISTLLSKKVIN----DREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMT 78
Cdd:MTH00030   7 TIFFSTLLGVGIILLLVSISFTLGNSRIGltkpDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWS 86

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 50812166   79 ITINNTNTLSWSLVsLVFLVILLMGLYHEWNQGSLTW 115
Cdd:MTH00030  87 IVFNQLNLFSFWIV-YTFLIVLAIGLAYEWIKGGLEW 122
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
9-115 4.88e-11

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 55.52  E-value: 4.88e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    9 LLTIIICLIVMTISTLLSKKVINDrEKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTITINNTNTls 88
Cdd:PRK07756  17 LLGILLPVVALTLGRMLRPNKPSA-AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGL-- 93

                         90       100
                 ....*....|....*....|....*...
gi 50812166   89 WSLVS-LVFLVILLMGLYHEWNQGSLTW 115
Cdd:PRK07756  94 FALIEmLIFVVMLLVGLAYAWKKKVLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 4-115 6.03e-11

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 55.06  E-value: 6.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    4 VLTTGLLTIIICLIVMTISTLLSKKVINdREKNSPFECGFDPKSSARIP--FSLRFFLIAVIFLIFDVEIALLLPMTITI 81
Cdd:PRK07928   7 ILVLGALAAAFAVVSVVVASLVGPKRYN-RAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSF 85

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 50812166   82 NNTNTlsWSLVSLV-FLVILLMGLYHEWNQGSLTW 115
Cdd:PRK07928  86 DALGV--FGLVEMAlFMLTVFVAYAYVWRRGGLEW 118
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
9-115 1.13e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 51.98  E-value: 1.13e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    9 LLTIIICLIVMTISTLLSKKVIN-DRE--KNSPFECGFDP-KSSARIpfSLRFFLIAVIFLIFDVEIALLLPMTItinNT 84
Cdd:PRK08489  18 VLTFVAFFLTTRLARFISRKLAQkNTEklKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFPWAV---DF 92

                         90       100       110
                 ....*....|....*....|....*....|...
gi 50812166   85 NTLSW-SLVS-LVFLVILLMGLYHEWNQGSLTW 115
Cdd:PRK08489  93 KLLGLfGLIEmLLFIVLLTIGFIYAWKKGALEW 125
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 9-115 6.01e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 49.90  E-value: 6.01e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    9 LLTIIICLIVMTISTLLSKK-VINDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTITINNTNTL 87
Cdd:MTH00060  10 VFFLLFLVIYFFHSGLWNNKiYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLLFYNF 89

                         90       100
                 ....*....|....*....|....*...
gi 50812166   88 SWslvSLVFLVILLMGLYHEWNQGSLTW 115
Cdd:MTH00060  90 WY---YYFFLLLLFLGFVVELFSGYVRW 114
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 9-115 4.67e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 42.19  E-value: 4.67e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50812166    9 LLTIIICLIVMTISTLLSKKViNDREKNSPFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTItinntNTLS 88
Cdd:MTH00092   9 LFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLV-----SDFS 82

                         90       100
                 ....*....|....*....|....*..
gi 50812166   89 WSLVSLVFLVILLMGLYHEWNQGSLTW 115
Cdd:MTH00092  83 SLISFFMLMIFIFFGFYMEWWYGKLIW 109
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 38-115 1.53e-04

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 38.64  E-value: 1.53e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 50812166   38 PFECGFDPKSSARIPFSLRFFLIAVIFLIFDVEIALLLPMTITINNTNTLSWsLVSLVFLVILLMGLYHEWNQGSLTW 115
Cdd:PRK06432  66 PYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPF-IETLIFLAMPLFAVYYAFKMGYMRW 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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