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Conserved domains on  [gi|513292502|gb|AGO21583|]
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cytochrome b, partial (mitochondrion) [Docosia muranica]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 1-217 4.39e-131

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 372.96  E-value: 4.39e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHL 160
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNK 299

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 513292502 161 SKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLINP 217
Cdd:MTH00156 300 SKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-217 4.39e-131

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 372.96  E-value: 4.39e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHL 160
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNK 299

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 513292502 161 SKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLINP 217
Cdd:MTH00156 300 SKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-215 4.06e-55

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 180.37  E-value: 4.06e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIH-FLLPFIISAVTMIHLLFLHQTGSNNPLG----LNSNIDKIPFHPYF 75
Cdd:COG1290  161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  76 TFSDIVGFFVLLMSLILLTLMSPNllGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILF 153
Cdd:COG1290  241 TVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLF 318

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 513292502 154 ILPFYHLSKFRGIQFYPINKIFFWIMIITIILLTWIGAKPveDPYVLTGQILTIIYFMYYLI 215
Cdd:COG1290  319 LLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 58-204 1.31e-44

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 145.87  E-value: 1.31e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  58 NPLGLNSNIDKIPFHPYFTFSDIVGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPN 137
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 513292502 138 KLGGVIALVLSIAILFILPFYHLSKFRGiQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQI 204
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
109-209 1.89e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 131.06  E-value: 1.89e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  109 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHLSKFRGIQFYPINKIFFWIMIITIILLTW 188
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 513292502  189 IGAKPVEDPYVLTGQILTIIY 209
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 109-176 6.79e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.18  E-value: 6.79e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 513292502  109 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFY-HLSKFRGIQFYPINKIFF 176
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-217 4.39e-131

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 372.96  E-value: 4.39e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00156 140 LSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDL 219

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHL 160
Cdd:MTH00156 220 VGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNK 299

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 513292502 161 SKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLINP 217
Cdd:MTH00156 300 SKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-223 1.70e-112

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 326.86  E-value: 1.70e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00145 151 LSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDL 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHL 160
Cdd:MTH00145 231 VGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHV 310

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 513292502 161 SKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLINPIMNLWW 223
Cdd:MTH00145 311 GKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLW 373
CYTB MTH00119
cytochrome b; Provisional
 1-221 1.35e-109

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 319.54  E-value: 1.35e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00119 151 LSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDL 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHL 160
Cdd:MTH00119 231 LGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHT 310

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 513292502 161 SKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLI-NPIMNL 221
Cdd:MTH00119 311 SKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLIlFPLLGA 372
CYTB MTH00016
cytochrome b; Validated
 1-223 8.35e-109

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 317.39  E-value: 8.35e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00016 151 LSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDI 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHL 160
Cdd:MTH00016 231 VGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFK 310

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 513292502 161 SKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLINPIMNLWW 223
Cdd:MTH00016 311 QKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLW 373
CYTB MTH00131
cytochrome b; Provisional
 1-215 9.15e-109

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 317.36  E-value: 9.15e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00131 150 LSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDL 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHL 160
Cdd:MTH00131 230 LGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHT 309

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 513292502 161 SKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLI 215
Cdd:MTH00131 310 SKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00074
cytochrome b; Provisional
 1-222 1.22e-107

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 314.31  E-value: 1.22e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00074 151 LSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDL 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHL 160
Cdd:MTH00074 231 LGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHT 310

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 513292502 161 SKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYL-INPIMNLW 222
Cdd:MTH00074 311 SKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIiIIPLTGWL 373
CYTB MTH00191
cytochrome b; Provisional
 1-215 1.41e-107

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 313.78  E-value: 1.41e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00191 147 LSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDI 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHL 160
Cdd:MTH00191 227 LGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHT 306

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 513292502 161 SKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLI 215
Cdd:MTH00191 307 SKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00100
cytochrome b; Provisional
 1-215 9.69e-105

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 306.95  E-value: 9.69e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00100 150 LSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDI 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHL 160
Cdd:MTH00100 230 LGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHT 309

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 513292502 161 SKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLI 215
Cdd:MTH00100 310 SKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364
CYTB MTH00034
cytochrome b; Validated
 1-215 2.52e-98

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 290.84  E-value: 2.52e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00034 150 VSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDL 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHL 160
Cdd:MTH00034 230 VGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHT 309

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 513292502 161 SKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLI 215
Cdd:MTH00034 310 SNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00022
cytochrome b; Validated
 1-215 1.51e-88

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 265.80  E-value: 1.51e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00022 149 LSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDW 228

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHL 160
Cdd:MTH00022 229 YGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHT 308

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 513292502 161 SKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLI 215
Cdd:MTH00022 309 SWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00053
cytochrome b; Provisional
 1-215 1.58e-86

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 260.79  E-value: 1.58e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00053 151 LSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDL 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHL 160
Cdd:MTH00053 231 YGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHK 310

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 513292502 161 SKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLI 215
Cdd:MTH00053 311 SRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00224
cytochrome b; Provisional
 1-223 1.35e-85

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 258.31  E-value: 1.35e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00224 151 FSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDA 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHL 160
Cdd:MTH00224 231 LGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSV 310

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 513292502 161 SKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLINPIMNLWW 223
Cdd:MTH00224 311 MNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLW 373
CYTB MTH00033
cytochrome b; Provisional
 1-215 2.66e-61

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 196.31  E-value: 2.66e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00033 147 VSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDI 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTLMS--PNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFY 158
Cdd:MTH00033 227 LGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPIL 306

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 513292502 159 HLSKFRGIQFYPINKIFFWIMIITIILLTWIGAKPV-EDPYVLTGQILTIIYFMYYLI 215
Cdd:MTH00033 307 DRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 1-220 4.81e-57

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 184.37  E-value: 4.81e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSDI 80
Cdd:MTH00086 139 LSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDA 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  81 VGFFVLLMSLILLTlMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYhl 160
Cdd:MTH00086 219 YNIIFWLVFIIFSL-FYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV-- 295

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502 161 sKFRGIQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLINPIMN 220
Cdd:MTH00086 296 -NNYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLMLFLF 354
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-215 4.06e-55

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 180.37  E-value: 4.06e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIH-FLLPFIISAVTMIHLLFLHQTGSNNPLG----LNSNIDKIPFHPYF 75
Cdd:COG1290  161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYY 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  76 TFSDIVGFFVLLMSLILLTLMSPNllGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILF 153
Cdd:COG1290  241 TVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLF 318

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 513292502 154 ILPFYHLSKFRGIQFYPINKIFFWIMIITIILLTWIGAKPveDPYVLTGQILTIIYFMYYLI 215
Cdd:COG1290  319 LLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 58-204 1.31e-44

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 145.87  E-value: 1.31e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  58 NPLGLNSNIDKIPFHPYFTFSDIVGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPN 137
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 513292502 138 KLGGVIALVLSIAILFILPFYHLSKFRGiQFYPINKIFFWIMIITIILLTWIGAKPVEDPYVLTGQI 204
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
109-209 1.89e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 131.06  E-value: 1.89e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  109 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFYHLSKFRGIQFYPINKIFFWIMIITIILLTW 188
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 513292502  189 IGAKPVEDPYVLTGQILTIIY 209
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
CYTB MTH00046
cytochrome b; Validated
 1-215 1.41e-37

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 133.95  E-value: 1.41e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSNNPLGLNSNI-DKIPFHPYFTFSD 79
Cdd:MTH00046 141 VDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKD 220

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502  80 IVGFFVLLMSLILLTLMSPNLLGDPDNFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGviaLVLSIAILFILpfyH 159
Cdd:MTH00046 221 LFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG---LVLVLSFLFFL---W 294

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 513292502 160 LSKFRGIQFYPI-NKIFFWIMIITIILLTWIGAKPVEDPYVLTGQILTIIYFMYYLI 215
Cdd:MTH00046 295 VPTFNGSSVYSVwRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-104 1.86e-23

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 92.30  E-value: 1.86e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502    1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHF-LLPFIISAVTMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFSD 79
Cdd:pfam13631  65 LSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144

                          90       100
                  ....*....|....*....|....*
gi 513292502   80 IVGFFVLLMSLILLTLMSPNLLGDP 104
Cdd:pfam13631 145 LLFFLITVALLIGLAQINPIWLGGP 169
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-57 4.59e-18

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 78.95  E-value: 4.59e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 513292502   1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTGSN 57
Cdd:cd00284  144 FSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-55 1.58e-16

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 74.34  E-value: 1.58e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 513292502    1 LSAIPYLGTYLVQWVWGGFAVDNATLTRFFTIHFLLPFIISAVTMIHLLFLHQTG 55
Cdd:pfam00033 135 LSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
petD CHL00058
cytochrome b6/f complex subunit IV
 96-157 1.57e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 55.01  E-value: 1.57e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 513292502  96 MSPNLLGDPdnfipANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPF 157
Cdd:CHL00058  57 LEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPF 113
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 96-157 1.52e-08

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 52.10  E-value: 1.52e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 513292502  96 MSPNLLGDPdnfipANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPF 157
Cdd:COG5679   58 LDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 109-176 6.79e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.18  E-value: 6.79e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 513292502  109 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILFILPFY-HLSKFRGIQFYPINKIFF 176
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF 133
PRK03735 PRK03735
cytochrome b6; Provisional
 2-60 1.65e-06

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 47.40  E-value: 1.65e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 513292502   2 SAIPYLGTYLVQWVWGGFAVDNATLTRFFTIH-FLLPFIISAVTMIHLLFLHQTGSNNPL 60
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 3-60 1.72e-06

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 47.02  E-value: 1.72e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 513292502   3 AIPYLGTYLVQWVWGGFAVDNATLTRFFTIH-FLLPFIISAVTMIHLLFLHQTGSNNPL 60
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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