|
Name |
Accession |
Description |
Interval |
E-value |
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
54-715 |
0e+00 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 699.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 54 RAEQIRSKSYLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRL 133
Cdd:pfam05557 1 RAELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 134 CKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQA 213
Cdd:pfam05557 81 KKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 214 SQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEGLQRKLSRQ 293
Cdd:pfam05557 161 QQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLERE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 294 EKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEV 373
Cdd:pfam05557 241 EKYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQEL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 374 RQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEYSTQLTQRLWEAEDMVQKVHAHSSEME 453
Cdd:pfam05557 321 AQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAEDMTQKMQAHNEEME 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 454 AQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSfcKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQG 533
Cdd:pfam05557 401 AQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYS--KEEVDSLRRKLETLELERQRLREQKNELEMELERRCLQG 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 534 DYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEECERLRGLVHALERGGPIPADLEAASSLPSSKEVAELRKQVESAELK 613
Cdd:pfam05557 479 DYDPKKTKVLHLSMNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKELESAELK 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 614 NQRLKEVFQTKIQEFRKVCYTLTGYQIDVTTESQYRLTSRYAEHQTDCLIFKATGPSGSKMQLLETEFSRSVPELIELHL 693
Cdd:pfam05557 559 NQRLKEVFQAKIQEFRDVCYMLTGYQIDITTNSQYRLTSMYAEHPDDYLLFKLSGSNGSTMQLLETPFSRTLEPLIDLHL 638
|
650 660
....*....|....*....|..
gi 52783152 694 LQQDSIPAFLSALTIELFSRQT 715
Cdd:pfam05557 639 AAQKSIPAFLSALTLELFSRQT 660
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-609 |
1.40e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 1.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 50 QLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERAAStnarnyerevdrnQELLARIRQLQECEATAEEKMREQLE 129
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL-------------EELELELEEAQAEEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 130 RHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKI- 208
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELe 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 209 ---QELQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRmpRMERELKRLHEENTHLREMKETNGLLTEELEG 285
Cdd:COG1196 383 elaEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE--ALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 286 LQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSAR----- 360
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAyeaal 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 361 --GLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEYSTQLTQRLWEA 438
Cdd:COG1196 541 eaALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGD 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 439 EDMVQKVHAHSSEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSfsfcKEEVDALRLKVEELEGERSRLEQE 518
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA----ALLEAEAELEELAERLAEEELELE 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 519 KQVLEMQMEKLTLQGDYNQSRTKVLHMSLnpisMARQRQHEDHDRLQEECERLRGLVHALERGGPIPADLEAAsslpsSK 598
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEA----LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL-----ER 767
|
570
....*....|.
gi 52783152 599 EVAELRKQVES 609
Cdd:COG1196 768 ELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
104-518 |
6.00e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 6.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 104 QELLARIRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRL 183
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 184 ESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEheqkikdlEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLH 263
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEE--------ELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 264 EENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLqswenldqtmglnlrtpEDLSRFVVELQQ 343
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE-----------------EEEEEALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 344 RELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNA--LLTKERDGMRAILGSYDsE 421
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvKAALLLAGLRGLAGAVA-V 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 422 LTQTEYSTQLTQRLWEAEDMVQKVHahssEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDAL 501
Cdd:COG1196 529 LIGVEAAYEAALEAALAAALQNIVV----EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLV 604
|
410
....*....|....*..
gi 52783152 502 RLKVEELEGERSRLEQE 518
Cdd:COG1196 605 ASDLREADARYYVLGDT 621
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
47-629 |
3.28e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 3.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 47 YHMQLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERaastnaRNYEREVDRNQELLARIRQLQECEATAEEKMRE 126
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE------RQLEELEAQLEELESKLDELAEELAELEEKLEE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 127 QLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQ 206
Cdd:TIGR02168 349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 207 KIQE--LQASQDERAEHEQKIKDLEQKL-CLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKE-----TNGL 278
Cdd:TIGR02168 429 KLEEaeLKELQAELEELEEELEELQEELeRLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEnlegfSEGV 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 279 LTEELEGLQRK--------------------------------------------------------------------- 289
Cdd:TIGR02168 509 KALLKNQSGLSgilgvlselisvdegyeaaieaalggrlqavvvenlnaakkaiaflkqnelgrvtflpldsikgteiqg 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 290 -----LSRQEKMQEALVDLELEKEKLLAKLQSW-------ENLDQTMGLNLRTPEDlSRFVV------------------ 339
Cdd:TIGR02168 589 ndreiLKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvDDLDNALELAKKLRPG-YRIVTldgdlvrpggvitggsak 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 340 -------------ELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTK 406
Cdd:TIGR02168 668 tnssilerrreieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 407 ERDGMRAILGSYDSELTQteystqLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSS 486
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEE------LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 487 AESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQE 566
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 52783152 567 ECERLRGLVHALERggpipadleaasslpsskEVAELRKQVESAELKNQRLKEVFQTKIQEFR 629
Cdd:TIGR02168 902 ELRELESKRSELRR------------------ELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
164-530 |
1.25e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 1.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 164 GRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELqasQDERAEHEQKIKDLEQKLCLQEQDAAVV- 242
Cdd:TIGR02168 663 GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEEL---EEELEQLRKELEELSRQISALRKDLARLe 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 243 KSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEglQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQ 322
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE--AEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 323 TMGLNLRTPEDLSRFVVELQQRELTLKEknnsitsSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNA 402
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEE-------QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 403 LLTKERDGMRAILGSYDSELtqteysTQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELgvqkqrADTLEMELKMLKA 482
Cdd:TIGR02168 891 LLRSELEELSEELRELESKR------SELRRELEELREKLAQLELRLEGLEVRIDNLQERL------SEEYSLTLEEAEA 958
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 52783152 483 QTSSAESSFSFCKEEVDALRLKVEEL-------EGERSRLEQEKQVLEMQMEKLT 530
Cdd:TIGR02168 959 LENKIEDDEEEARRRLKRLENKIKELgpvnlaaIEEYEELKERYDFLTAQKEDLT 1013
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
141-530 |
2.24e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 2.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 141 VSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQasqDERAE 220
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE---QEIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 221 HEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERelkrLHEENTHLREMKETNGLLTEELEGLQRKLSRqekmqeal 300
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR----IPEIQAELSKLEEEVSRIEARLREIEQKLNR-------- 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 301 vdLELEKEKLLAKLQswenldqtmglnlrtpeDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQL 380
Cdd:TIGR02169 824 --LTLEKEYLEKEIQ-----------------ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 381 LEERKKRETHEALARRLQKRNALLTKERDGMRAILGsydseltqteystQLTQRLWEAEDMVqkvhahsSEMEAQLSQAL 460
Cdd:TIGR02169 885 GDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS-------------ELKAKLEALEEEL-------SEIEDPKGEDE 944
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 461 EELGvQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLT 530
Cdd:TIGR02169 945 EIPE-EELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2-320 |
3.43e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 3.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 2 EDLGENTTVLSSLRSLNNFISQRM-EGTSGLDVSTSASGSLQKQYE----YHMQLEERAEQIRSKSYLIQVEREKMQMEL 76
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIENRLdELSQELSDASRKIGEIEKEIEqleqEEEKLKERLEELEEDLSSLEQEIENVKSEL 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 77 SHKRARVELERAASTNARNYEREVDRN------QELLARIRQLQECEATAEEKMRE---QLERHRLCKQNLDAVSQ---- 143
Cdd:TIGR02169 761 KELEARIEELEEDLHKLEEALNDLEARlshsriPEIQAELSKLEEEVSRIEARLREieqKLNRLTLEKEYLEKEIQelqe 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 144 QLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEH-- 221
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRls 920
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 222 --EQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEEnthLREMKETNGLLTEELEglqRKLSRQEKMQEA 299
Cdd:TIGR02169 921 elKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE---IRALEPVNMLAIQEYE---EVLKRLDELKEK 994
|
330 340
....*....|....*....|.
gi 52783152 300 LVDLELEKEKLLAKLQSWENL 320
Cdd:TIGR02169 995 RAKLEEERKAILERIEEYEKK 1015
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-523 |
2.93e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 2.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 50 QLEERAEQIRSKSYLIQVEREKMQMELSH-KRARVELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQL 128
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEaEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 129 ERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKI 208
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 209 QELQASQDERAEHEQ--KIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEG- 285
Cdd:COG1196 494 LLLLEAEADYEGFLEgvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGr 573
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 286 -------------LQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQR--ELTLKE 350
Cdd:COG1196 574 atflpldkiraraALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRlrEVTLEG 653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 351 KNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILgsydSELTQTEYSTQ 430
Cdd:COG1196 654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE----EELEEEALEEQ 729
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 431 LTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAEssfsfckEEVDALRLKVEELEG 510
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVNLLAI-------EEYEELEERYDFLSE 802
|
490
....*....|...
gi 52783152 511 ERSRLEQEKQVLE 523
Cdd:COG1196 803 QREDLEEARETLE 815
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
141-518 |
3.70e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 3.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 141 VSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELkEQLELQQRKWQEANQKIQE-LQASQDERA 219
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI-EELEKELESLEGSKRKLEEkIRELEERIE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 220 EHEQKIKDLEQKlclqeqdAAVVKSMKSELMRMPRMERELKRLHEEnthLREMKETNGLLTEELEGLQRKLSRQEKMQEA 299
Cdd:PRK03918 270 ELKKEIEELEEK-------VKELKELKEKAEEYIKLSEFYEEYLDE---LREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 300 LVDLELEKEKLLAKL-------QSWENLDQTMG--------LNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEK 364
Cdd:PRK03918 340 LEELKKKLKELEKRLeeleerhELYEEAKAKKEelerlkkrLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKK 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 365 VQQQLQD---EVRQA-------NAQLLEERKKR--ETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEYSTQLT 432
Cdd:PRK03918 420 EIKELKKaieELKKAkgkcpvcGRELTEEHRKEllEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 433 QRLWEAEDMVQKVHAHSSEmeaQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESsfsfCKEEVDALRLKVEELEGER 512
Cdd:PRK03918 500 ELAEQLKELEEKLKKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEEL 572
|
....*.
gi 52783152 513 SRLEQE 518
Cdd:PRK03918 573 AELLKE 578
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
40-319 |
5.88e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 5.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 40 SLQKQYEYHMQLEERAEQIRSKSYLIQVEREKmqmelSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEAT 119
Cdd:TIGR02168 204 SLERQAEKAERYKELKAELRELELALLVLRLE-----ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 120 AEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQR 199
Cdd:TIGR02168 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 200 KWQEANQKIQEL-QASQDERAEHEQ---KIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKET 275
Cdd:TIGR02168 359 ELEELEAELEELeSRLEELEEQLETlrsKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL 438
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 52783152 276 NGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWEN 319
Cdd:TIGR02168 439 QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
155-523 |
1.54e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 155 AREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQ-EANQKIQELQASQDERAEHEQKIKDLEQKLC 233
Cdd:TIGR02169 175 ALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyEGYELLKEKEALERQKEAIERQLASLEEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 234 -LQEQDAAVVKSMKSELMRMPRMERELKRLHEEntHLREMKETNGLLTEELEGLQR----KLSRQEKMQEALVDLELEKE 308
Cdd:TIGR02169 255 kLTEEISELEKRLEEIEQLLEELNKKIKDLGEE--EQLRVKEKIGELEAEIASLERsiaeKERELEDAEERLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 309 KLLAKLQSWEnldqtmglnlRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRE 388
Cdd:TIGR02169 333 KLLAEIEELE----------REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 389 THEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEystqltqrlweaedmvqkvhahssemeaqlsqalEELGVQKQ 468
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE----------------------------------EEKEDKAL 448
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 52783152 469 RADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLE 523
Cdd:TIGR02169 449 EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
126-537 |
1.62e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 126 EQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQ--LSAMDQKVQVKRLESEKQELKEQLELQQRKWQE 203
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELReeLEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 204 ANQKIQELQASQDERAEHEQKIKDLEQKLCLQEQDAAVvksmkSELMRMPRMERELKRLHEENTHLREMKETnglLTEEL 283
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSL-----ATEEELQDLAEELEELQQRLAELEEELEE---AQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 284 EGLQRKLSRQEKMQEALVDleleKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLE 363
Cdd:COG4717 223 EELEEELEQLENELEAAAL----EERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 364 KVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILgSYDSELTQTEYSTQLTQRLWEAEDMVQ 443
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQ-ELLREAEELEEELQLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 444 KVHAHSSEMEAQLSQALEELGVQKQRADTLEMEL--KMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQV 521
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLeeLLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAE 457
|
410
....*....|....*.
gi 52783152 522 LEMQMEKLTLQGDYNQ 537
Cdd:COG4717 458 LEAELEQLEEDGELAE 473
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
51-616 |
8.90e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 8.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 51 LEERAEQIRSKSYLIQV-EREKMQMELSHKRARVE-LERAASTNARNYEREVDRNQELLARIRQLQECEATA-EEKMREQ 127
Cdd:TIGR02169 220 KREYEGYELLKEKEALErQKEAIERQLASLEEELEkLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvKEKIGEL 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 128 LERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQrkwQEANQK 207
Cdd:TIGR02169 300 EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR---AELEEV 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 208 IQELQASQDERAEHEQKIKDLEQKL-CLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEG- 285
Cdd:TIGR02169 377 DKEFAETRDELKDYREKLEKLKREInELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWk 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 286 LQRKLSRQEKMQEALVDLELEKEKLLAKLQSwenLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKV 365
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSK---LQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSV 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 366 QQQLQ------------------DEVRQANAQLLEERK----------KRETHEALARRLQK------------------ 399
Cdd:TIGR02169 534 GERYAtaievaagnrlnnvvvedDAVAKEAIELLKRRKagratflplnKMRDERRDLSILSEdgvigfavdlvefdpkye 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 400 -------RNALLTKERDGMRAILGSY-----DSEL----------TQTEYSTQLTQRLWEAEdmVQKVHAHSSEMEAQLS 457
Cdd:TIGR02169 614 pafkyvfGDTLVVEDIEAARRLMGKYrmvtlEGELfeksgamtggSRAPRGGILFSRSEPAE--LQRLRERLEGLKRELS 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 458 QALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQ 537
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 538 SRTKVLHMSLNPI----SMARQRQHEDH-DRLQEECERLRGLVHALErggpipADLEAASSLPSSKEVAELRKQVESAEL 612
Cdd:TIGR02169 772 EDLHKLEEALNDLearlSHSRIPEIQAElSKLEEEVSRIEARLREIE------QKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
....
gi 52783152 613 KNQR 616
Cdd:TIGR02169 846 KEQI 849
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
94-619 |
2.36e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 2.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 94 RNYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRLCKQNLdavsQQLREQEDSLASAREMISSLKGRVSELQLSA 173
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSEL----PELREELEKLEKEVKELEELKEEIEELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 174 MDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLclqeqdaavVKSMKSELmRMP 253
Cdd:PRK03918 248 ESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYL---------DELREIEK-RLS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 254 RMERELKRLHEENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEALvdlelekEKLLAKLQSWENLDQTMGLnlRTPED 333
Cdd:PRK03918 318 RLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY-------EEAKAKKEELERLKKRLTG--LTPEK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 334 LSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQD---EVRQA-------NAQLLEERKKR--ETHEALARRLQKRN 401
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKaieELKKAkgkcpvcGRELTEEHRKEllEEYTAELKRIEKEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 402 ALLTKERDGMRAILGSYDSELTQTEYSTQLTQRLWEAEDMVQKVHAHSSEmeaQLSQALEELGVQKQRADTLEMELKMLK 481
Cdd:PRK03918 469 KEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKSLK 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 482 AQTSSAESsfsfCKEEVDALRLKVEELEGERSRLEQE------KQVLEMQMEKLTLQGDYN------------QSRTKVL 543
Cdd:PRK03918 546 KELEKLEE----LKKKLAELEKKLDELEEELAELLKEleelgfESVEELEERLKELEPFYNeylelkdaekelEREEKEL 621
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 52783152 544 HMSLNPISMARqrqhEDHDRLQEECERLRGLVHALERGGPiPADLEAASS--LPSSKEVAELRKQVESAELKNQRLKE 619
Cdd:PRK03918 622 KKLEEELDKAF----EELAETEKRLEELRKELEELEKKYS-EEEYEELREeyLELSRELAGLRAELEELEKRREEIKK 694
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
96-462 |
3.98e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 3.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 96 YEREVDRNQELLARIRQLQECEATAEEKMREQLER---HRLCKQNLDAVSQQLREQEDSLASAREmisslkgRVSELQLS 172
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERlrrEREKAERYQALLKEKREYEGYELLKEK-------EALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 173 AMDQkvQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQkIKDLEQKLCLQEQDAAVVKSMKSELMRM 252
Cdd:TIGR02169 241 AIER--QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ-LRVKEKIGELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 253 PRMERELKRLHEEnthLREMKETNGLLTEELEGLQRklsRQEKMQEALVDLELEKEKLLAKLQSWENLDQTmglnlrTPE 332
Cdd:TIGR02169 318 EDAEERLAKLEAE---IDKLLAEIEELEREIEEERK---RRDKLTEEYAELKEELEDLRAELEEVDKEFAE------TRD 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 333 DLSRFVVELQQreltLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLleERKKRETHEALARRLQKRNALLTKERDGMR 412
Cdd:TIGR02169 386 ELKDYREKLEK----LKREINELKRELDRLQEELQRLSEELADLNAAI--AGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 52783152 413 --AILGSYDSELtqteysTQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEE 462
Cdd:TIGR02169 460 laADLSKYEQEL------YDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
169-402 |
7.01e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 7.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 169 LQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQasqDERAEHEQKIKDLEQKLCLQEQDAAvvksmkse 248
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALL---KQLAALERRIAALARRIRALEQELA-------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 249 lmrmpRMERELKRLHEENTHLR-EMKETNGLLTEELEGLQRK--------LSRQEKMQEALVDLELEKEKLLAKLQSWEN 319
Cdd:COG4942 80 -----ALEAELAELEKEIAELRaELEAQKEELAELLRALYRLgrqpplalLLSPEDFLDAVRRLQYLKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 320 LDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQK 399
Cdd:COG4942 155 LRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
...
gi 52783152 400 RNA 402
Cdd:COG4942 235 EAA 237
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
279-580 |
8.30e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 8.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 279 LTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSwenldqtmglnlrtpEDLSRFVVELQQRELTLKEKNNSITSS 358
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAERYKELKAELRELELALLV---------------LRLEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 359 ARGLEKVQQQ---LQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEystqltQRL 435
Cdd:TIGR02168 259 TAELQELEEKleeLRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE------SKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 436 WEAEDMVQkvhahssEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRL 515
Cdd:TIGR02168 333 DELAEELA-------ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 516 EQEKQVLEMQMEKL-----TLQGDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEECERLRGLVHALER 580
Cdd:TIGR02168 406 EARLERLEDRRERLqqeieELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
139-572 |
8.35e-06 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 49.41 E-value: 8.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 139 DAVSQQLREQEDSLASaREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASqder 218
Cdd:PRK10246 409 DEVAAALAQHAEQRPL-RQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTI---- 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 219 AEHEQKIKDLEQK-----------LCLQEQDAAVVKSMKSEL----MRMPRMERELKRLHEENTHLREmketngllteEL 283
Cdd:PRK10246 484 CEQEARIKDLEAQraqlqagqpcpLCGSTSHPAVEAYQALEPgvnqSRLDALEKEVKKLGEEGAALRG----------QL 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 284 EGLQRKLSRQEKMQEALvdleLEKEKLLAklQSWENLDQTMGLNLRTPEDLSRFVVELQQRE-------------LTLKE 350
Cdd:PRK10246 554 DALTKQLQRDESEAQSL----RQEEQALT--QQWQAVCASLNITLQPQDDIQPWLDAQEEHErqlrllsqrhelqGQIAA 627
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 351 KNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKK------RETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQ 424
Cdd:PRK10246 628 HNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEaswlatRQQEAQSWQQRQNELTALQNRIQQLTPLLETLPQSDDL 707
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 425 TEYSTQLTQRLWeaedmvQKVHAHSSEMEAQLSQALEELGVQKQRADTLEmelkmlkAQTSSAESSFSFCKEEVDALRLK 504
Cdd:PRK10246 708 PHSEETVALDNW------RQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQ-------AQFDTALQASVFDDQQAFLAALL 774
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 52783152 505 VEElegERSRLEQEKQVLEMQMEKL-TLQGDYNQSRTKVLHM---SLNPISMARQRQHEdhdrLQEECERLR 572
Cdd:PRK10246 775 DEE---TLTQLEQLKQNLENQRQQAqTLVTQTAQALAQHQQHrpdGLDLTVTVEQIQQE----LAQLAQQLR 839
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
52-539 |
9.72e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 9.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 52 EERAEQIRSksylIQVEREKMQMELSH-KRARVELERAASTNARNYEREVDRNQELLARIrQLQECEATAEEKMREQLER 130
Cdd:PRK02224 247 EERREELET----LEAEIEDLRETIAEtEREREELAEEVRDLRERLEELEEERDDLLAEA-GLDDADAEAVEARREELED 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 131 HRlckqnlDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQE 210
Cdd:PRK02224 322 RD------EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 211 LQASQDERAEHEQKIKDLEQKLcLQEQDAAV--VKSMKSELMRMPRMERELKRLHEENTHLREMKETNGllTEELEGLQR 288
Cdd:PRK02224 396 LRERFGDAPVDLGNAEDFLEEL-REERDELRerEAELEATLRTARERVEEAEALLEAGKCPECGQPVEG--SPHVETIEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 289 KLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQ 368
Cdd:PRK02224 473 DRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAE 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 369 LQDEVRQANAQLLEERKKRETHEALARRLQKrnalLTKERDGMRAI------LGSYDSEL-TQTEYSTQLTQRLWEAEDM 441
Cdd:PRK02224 553 AEEKREAAAEAEEEAEEAREEVAELNSKLAE----LKERIESLERIrtllaaIADAEDEIeRLREKREALAELNDERRER 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 442 VQKVHAHSSEMEAQLSQA-LEELGVQKQRADT----LEMELKMLKAQTSSAESSFSFCKEEVDALrlkvEELEGERSRLE 516
Cdd:PRK02224 629 LAEKRERKRELEAEFDEArIEEAREDKERAEEyleqVEEKLDELREERDDLQAEIGAVENELEEL----EELRERREALE 704
|
490 500
....*....|....*....|....
gi 52783152 517 QEKQVLE-MQMEKLTLQGDYNQSR 539
Cdd:PRK02224 705 NRVEALEaLYDEAEELESMYGDLR 728
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
151-386 |
1.51e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 151 SLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQAsqdERAEHEQKIKDLEQ 230
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ---ELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 231 KLCLQEQDAAVVKSMKSELM----RMPRMERELKRLHEEN-----THLREMKETNGLLTEELEGLQRKLSRQEKMQEALV 301
Cdd:COG4942 91 EIAELRAELEAQKEELAELLralyRLGRQPPLALLLSPEDfldavRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 302 DLELEKEKLLAKLQswenldqtmglnlRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLL 381
Cdd:COG4942 171 AERAELEALLAELE-------------EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
....*
gi 52783152 382 EERKK 386
Cdd:COG4942 238 AAAER 242
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
113-414 |
2.15e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.91 E-value: 2.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 113 LQECEATAEEKMREQLERHRlckqnlDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKE 192
Cdd:pfam12128 587 LKRIDVPEWAASEEELRERL------DKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFD 660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 193 QLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLCLQEQDaavvksmksELMRMPRMERELKRLHEENthlrEM 272
Cdd:pfam12128 661 EKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQK---------EQKREARTEKQAYWQVVEG----AL 727
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 273 KETNGLLTEELEGLQRKLSRQEK-----MQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQ----Q 343
Cdd:pfam12128 728 DAQLALLKAAIAARRSGAKAELKaletwYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQetwlQ 807
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 52783152 344 RELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALArrlqkrNALLTKERDGMRAI 414
Cdd:pfam12128 808 RRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRL------SENLRGLRCEMSKL 872
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
99-554 |
5.47e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 5.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 99 EVDRNQELLARIRQlqECEATAEEKM------REQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLS 172
Cdd:pfam15921 427 EVQRLEALLKAMKS--ECQGQMERQMaaiqgkNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAS 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 173 AMDQKVQVKRLESEKQELKEQLELqqrkwqeanqKIQELQASQDErAEHEQKIKDLEQKLCLQ-EQDAAVVKSMKSELMR 251
Cdd:pfam15921 505 LQEKERAIEATNAEITKLRSRVDL----------KLQELQHLKNE-GDHLRNVQTECEALKLQmAEKDKVIEILRQQIEN 573
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 252 MPRMERELKR----LHEENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEALV-DLELEKEKLL----AKLQSWENLDQ 322
Cdd:pfam15921 574 MTQLVGQHGRtagaMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVsDLELEKVKLVnagsERLRAVKDIKQ 653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 323 TMGLNLRTPEDLSRFVVELQQRELTLKEknnSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNA 402
Cdd:pfam15921 654 ERDQLLNEVKTSRNELNSLSEDYEVLKR---NFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAM 730
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 403 LLTKERDGMRAILGSYDSELtqteystqltQRLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRadtLEMELKMLKA 482
Cdd:pfam15921 731 GMQKQITAKRGQIDALQSKI----------QFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNK---MAGELEVLRS 797
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 52783152 483 QTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQ--MEKLTLQGDYNQSRTKVLHMSLNPISMAR 554
Cdd:pfam15921 798 QERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQhtLDVKELQGPGYTSNSSMKPRLLQPASFTR 871
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
104-630 |
6.39e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 6.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 104 QELLARIRQLQECEATAEEKMREQleRHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQ-VKR 182
Cdd:COG4913 265 AAARERLAELEYLRAALRLWFAQR--RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDrLEQ 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 183 LESEKQELKEQLELQQRKWQEANQKIQELQASQDE--------RAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELmrmpr 254
Cdd:COG4913 343 LEREIERLERELEERERRRARLEALLAALGLPLPAsaeefaalRAEAAALLEALEEELEALEEALAEAEAALRDL----- 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 255 mERELKRLHEEnthLREMKETNGLLTEELEGLQRKLSRQEKMQEA-------LVDLELEKE------------------- 308
Cdd:COG4913 418 -RRELRELEAE---IASLERRKSNIPARLLALRDALAEALGLDEAelpfvgeLIEVRPEEErwrgaiervlggfaltllv 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 309 --KLLAKLQSWenLDQT-MGLNLRTpEDLSRFVVELQQREL---TLKEKNNSITSSARG-LEKVQQQLQDEVRQANAQLL 381
Cdd:COG4913 494 ppEHYAAALRW--VNRLhLRGRLVY-ERVRTGLPDPERPRLdpdSLAGKLDFKPHPFRAwLEAELGRRFDYVCVDSPEEL 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 382 EERKKRETHEALARRLQKRNALLTKERDGMRAILGsydseltqteystqltqrlWEAEDMVQkvhahssEMEAQLSQALE 461
Cdd:COG4913 571 RRHPRAITRAGQVKGNGTRHEKDDRRRIRSRYVLG-------------------FDNRAKLA-------ALEAELAELEE 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 462 ELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVD--ALRLKVEELEGERSRLEQEKQVLemqmEKLTLQGDYNQSR 539
Cdd:COG4913 625 ELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDvaSAEREIAELEAELERLDASSDDL----AALEEQLEELEAE 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 540 TKVLHMSLNPISMARQRQHEDHDRLQEECERLRGLVHALERGGPIP------ADLEAASSLPSSKEVAE-LRKQVESAEL 612
Cdd:COG4913 701 LEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElralleERFAAALGDAVERELREnLEERIDALRA 780
|
570
....*....|....*...
gi 52783152 613 KNQRLKEVFQTKIQEFRK 630
Cdd:COG4913 781 RLNRAEEELERAMRAFNR 798
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
51-567 |
8.58e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 8.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 51 LEERAEQIRSKS-----YLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLAR---------IRQLQEC 116
Cdd:pfam15921 243 VEDQLEALKSESqnkieLLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEqarnqnsmyMRQLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 117 EATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELqlsamDQKVQ--VKRLESEKQELKEQL 194
Cdd:pfam15921 323 ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNL-----DDQLQklLADLHKREKELSLEK 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 195 ELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEqklclqeqdaAVVKSMKSELmrMPRMERELKRLHEENTHLREM-- 272
Cdd:pfam15921 398 EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLE----------ALLKAMKSEC--QGQMERQMAAIQGKNESLEKVss 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 273 --------KETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKL-------LAKLQSWENLDQTMGLNLRTPEDLSRF 337
Cdd:pfam15921 466 ltaqlestKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAieatnaeITKLRSRVDLKLQELQHLKNEGDHLRN 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 338 V-VELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILG 416
Cdd:pfam15921 546 VqTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEA 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 417 SY-DSELTQTEYSTQLTQRLWEAEDMVQKVHAHSSEME---AQLSQALEELGVQKQ----RADTLEMELKMLKAQTSSAE 488
Cdd:pfam15921 626 RVsDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKtsrNELNSLSEDYEVLKRnfrnKSEEMETTTNKLKMQLKSAQ 705
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 52783152 489 SsfsfckeEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEE 567
Cdd:pfam15921 706 S-------ELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQE 777
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
88-354 |
1.61e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 88 AASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRlckQNLDAVSQQLREQEDSLASAREMISSLKGRVS 167
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE---RRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 168 ELQlsamdqkvqvKRLESEKQELKEQLELQQRKwqeANQKIQELQASQDERAEHEQKIKDLEQklcLQEQDAAVVKSMKS 247
Cdd:COG4942 94 ELR----------AELEAQKEELAELLRALYRL---GRQPPLALLLSPEDFLDAVRRLQYLKY---LAPARREQAEELRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 248 ElmrmprmerelkrlheenthLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLN 327
Cdd:COG4942 158 D--------------------LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAE 217
|
250 260
....*....|....*....|....*...
gi 52783152 328 LRTPE-DLSRFVVELQQRELTLKEKNNS 354
Cdd:COG4942 218 LQQEAeELEALIARLEAEAAAAAERTPA 245
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
258-528 |
1.93e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.50 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 258 ELKRLHEENTHLREM-KETNGLLTEELEGLQRKLSRQ-EKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTpedLS 335
Cdd:pfam07888 45 ELLQAQEAANRQREKeKERYKRDREQWERQRRELESRvAELKEELRQSREKHEELEEKYKELSASSEELSEEKDA---LL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 336 RFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAIL 415
Cdd:pfam07888 122 AQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 416 GSYDSELTQTEYS-TQLTQRLWEAedmvQKVHAHSSEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFC 494
Cdd:pfam07888 202 AQRDTQVLQLQDTiTTLTQKLTTA----HRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQA 277
|
250 260 270
....*....|....*....|....*....|....*...
gi 52783152 495 KEEVDALRLKVEE----LEGERSRLEQEKQVLEMQMEK 528
Cdd:pfam07888 278 RLQAAQLTLQLADaslaLREGRARWAQERETLQQSAEA 315
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
138-248 |
2.82e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.30 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 138 LDAVSQQLREQEDSLASAREMISSLKgrvselQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDE 217
Cdd:COG0542 406 IDSKPEELDELERRLEQLEIEKEALK------KEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEE 479
|
90 100 110
....*....|....*....|....*....|.
gi 52783152 218 RAEHEQKIKDLEQKLCLQEQDAAVVKSMKSE 248
Cdd:COG0542 480 LEQRYGKIPELEKELAELEEELAELAPLLRE 510
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
155-300 |
2.90e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.43 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 155 AREMISSLKGRVSELqlsamdqkvqVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIK-DLEQKLc 233
Cdd:PRK00409 507 AKKLIGEDKEKLNEL----------IASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLeEAEKEA- 575
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 52783152 234 lqeqdAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEAL 300
Cdd:PRK00409 576 -----QQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
180-584 |
3.14e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 180 VKRLESEKQEL----KEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRM 255
Cdd:COG4717 48 LERLEKEADELfkpqGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 256 ERELKRLHEENTHLREmketnglLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLdqtmgLNLRTPEDLS 335
Cdd:COG4717 128 LPLYQELEALEAELAE-------LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQ-----LSLATEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 336 RFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALAR--------------RLQKRN 401
Cdd:COG4717 196 DLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaallallglggsllSLILTI 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 402 ALLTKERDGMRAILGSYDSELTQTEYSTQLTQRLWEAEDMVQKV------------HAHSSEMEAQLSQALEELGVQKQR 469
Cdd:COG4717 276 AGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEeleellaalglpPDLSPEELLELLDRIEELQELLRE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 470 ADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEgERSRLEQEKQVLEMQMEKL--TLQGDYNQSRTKVLHMSL 547
Cdd:COG4717 356 AEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEELlgELEELLEALDEEELEEEL 434
|
410 420 430
....*....|....*....|....*....|....*..
gi 52783152 548 NPISMARQRQHEDHDRLQEECERLRGLVHALERGGPI 584
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQLEEDGEL 471
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
85-543 |
3.63e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 85 LERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISslkg 164
Cdd:PRK04863 263 ITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN---- 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 165 rvseLQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQAsQDERAEHEQkikdleqkLCLQEQDAAVVKS 244
Cdd:PRK04863 339 ----LVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEA-RAEAAEEEV--------DELKSQLADYQQA 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 245 MkSELMRMPRMERELKRLheenthLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKllaKLQSWEN----L 320
Cdd:PRK04863 406 L-DVQQTRAIQYQQAVQA------LERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQ---KLSVAQAahsqF 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 321 DQTMGLNLRTPEDLSRFVVELQQRELTLKEKNnsitssarglekvQQQLQDEVRQANAQLLEERKKRETHEALARRLQKR 400
Cdd:PRK04863 476 EQAYQLVRKIAGEVSRSEAWDVARELLRRLRE-------------QRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEF 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 401 NalltkerdgMRAILGSYDSELTQTEYStQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRAD---TLEMEL 477
Cdd:PRK04863 543 C---------KRLGKNLDDEDELEQLQE-ELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPawlAAQDAL 612
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 52783152 478 KMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVL 543
Cdd:PRK04863 613 ARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSEDPRLNAL 678
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-396 |
4.56e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 4.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 50 QLEERAEQIRSKS-YLIQVEREKMQMELSHKRARvELERAASTNARNYE-REVDRNQELLARIRQLQECEATAEEKMR-E 126
Cdd:PTZ00121 1395 EAKKKAEEDKKKAdELKKAAAAKKKADEAKKKAE-EKKKADEAKKKAEEaKKADEAKKKAEEAKKAEEAKKKAEEAKKaD 1473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 127 QLERHRLCKQNLDAVSQQLREQEDSLASAREMiSSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQ 206
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKA-AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 207 KIQEL-------QASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGlL 279
Cdd:PTZ00121 1553 KAEELkkaeekkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE-E 1631
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 280 TEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQREltlkeknnsiTSSA 359
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE----------AEEA 1701
|
330 340 350
....*....|....*....|....*....|....*..
gi 52783152 360 RGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARR 396
Cdd:PTZ00121 1702 KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
40-527 |
5.15e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 5.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 40 SLQKQYEYHMQLEERAEQIRSKSYLIQVEREKMQmelSHKRARVELERA-ASTNARNYEREVDRNQELLARIRQLQECEA 118
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELLEPIRELAE---RYAAARERLAELeYLRAALRLWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 119 TAEEKMREQLERHRLCKQNLDAVSQQLREQE-DSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQ 197
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAAL 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 198 QRKWQEANQKIQELQAS-QDERAEHEQKIKDLEQKLclqEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLRE----- 271
Cdd:COG4913 386 RAEAAALLEALEEELEAlEEALAEAEAALRDLRREL---RELEAEIASLERRKSNIPARLLALRDALAEALGLDEaelpf 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 272 ------MKETNGLLTEELEGL-----------------------QRKLSRQ------EKMQEALVDLELEKEKLLAKLQS 316
Cdd:COG4913 463 vgelieVRPEEERWRGAIERVlggfaltllvppehyaaalrwvnRLHLRGRlvyervRTGLPDPERPRLDPDSLAGKLDF 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 317 WEN-----LDQTMGLNL-----RTPEDLSRFvvelqQRELTLkeknNSITSSARGLekvqQQLQDEVRQANAQLL--EER 384
Cdd:COG4913 543 KPHpfrawLEAELGRRFdyvcvDSPEELRRH-----PRAITR----AGQVKGNGTR----HEKDDRRRIRSRYVLgfDNR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 385 KKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQteySTQLTQRLWEAEDMvqkvhahssemeAQLSQALEELG 464
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREA---LQRLAEYSWDEIDV------------ASAEREIAELE 674
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 52783152 465 VQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQME 527
Cdd:COG4913 675 AELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE 737
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
15-427 |
5.39e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 5.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 15 RSLNNFISQRMEGTSGLDVSTSASGSLQKQYEYHMQLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERAASTNAR 94
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 95 NYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAM 174
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 175 DQKVQVKRLESEKQELKEQLELQQRKWQ------------------EANQKIQELQAS------------QDERAEHEQK 224
Cdd:COG4717 224 ELEEELEQLENELEAAALEERLKEARLLlliaaallallglggsllSLILTIAGVLFLvlgllallflllAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 225 IKDLEQKLCLQEQDAAVVKSMKSELMRMPRMER-ELKRLHEENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDL 303
Cdd:COG4717 304 AEELQALPALEELEEEELEELLAALGLPPDLSPeELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 304 ELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQR--ELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLL 381
Cdd:COG4717 384 EEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEAldEEELEEELEELEEELEELEEELEELREELAELEAELE 463
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 52783152 382 EERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEY 427
Cdd:COG4717 464 QLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEY 509
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
53-391 |
5.78e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 5.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 53 ERAEQIRSKSYLIQVEREKMQMELshkRARVELERAAST-NARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERH 131
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKKADEL---KKAEELKKAEEKkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 132 RLCKqnldavSQQLREQEDSLASAREM--ISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQ 209
Cdd:PTZ00121 1605 KKMK------AEEAKKAEEAKIKAEELkkAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 210 ELQASQDERAEHEQKIKDleqklclQEQDAAVVKSMKSELMRMPRMERELKRLHEENT----HLREMKETNGLLTEEL-- 283
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKK-------EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKikaeEAKKEAEEDKKKAEEAkk 1751
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 284 -EGLQRKLSRQEKMQEALV-DLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVelqqreltLKEKNNSITSSARG 361
Cdd:PTZ00121 1752 dEEEKKKIAHLKKEEEKKAeEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFAN--------IIEGGKEGNLVIND 1823
|
330 340 350
....*....|....*....|....*....|
gi 52783152 362 LEKVQQQLQDEVRQANAQLLEERKKRETHE 391
Cdd:PTZ00121 1824 SKEMEDSAIKEVADSKNMQLEEADAFEKHK 1853
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
50-220 |
7.54e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 50 QLEERAEQIRSKSYLIQVEREKMQMELSHKRARV-ELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQL 128
Cdd:COG4942 73 ALEQELAALEAELAELEKEIAELRAELEAQKEELaELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 129 ERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLsamDQKVQVKRLESEKQELKEQLELQQRKWQEANQKI 208
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAELEEERAALEALKA---ERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
170
....*....|..
gi 52783152 209 QELQASQDERAE 220
Cdd:COG4942 230 ARLEAEAAAAAE 241
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
166-481 |
9.20e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 9.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 166 VSELQLSAMDQKVQVKRLESEKQELKEQLElQQRKWQEANQKIQ-ELQASQDERAEHEQKIKDLEQKLCLQEQDAavvKS 244
Cdd:pfam17380 284 VSERQQQEKFEKMEQERLRQEKEEKAREVE-RRRKLEEAEKARQaEMDRQAAIYAEQERMAMERERELERIRQEE---RK 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 245 MKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKlQSWENLDQTM 324
Cdd:pfam17380 360 RELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE-QEEARQREVR 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 325 GLNLRTPEDLSRFVVELQQREltlkeknnsitssaRGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQK----- 399
Cdd:pfam17380 439 RLEEERAREMERVRLEEQERQ--------------QQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKeleer 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 400 RNALLTKERDgmRAILgSYDSELTQTEYSTQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEElgvqKQRADTLEMELKM 479
Cdd:pfam17380 505 KQAMIEEERK--RKLL-EKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEE----RSRLEAMEREREM 577
|
..
gi 52783152 480 LK 481
Cdd:pfam17380 578 MR 579
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
147-415 |
9.75e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 9.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 147 EQEDSLASAREMISSLKgRVSELQLSAMDQKVQVKRLEsekqELKEQLELQQRKWQEANQKIQELQASQDERAEheQKIK 226
Cdd:COG4913 219 EEPDTFEAADALVEHFD-DLERAHEALEDAREQIELLE----PIRELAERYAAARERLAELEYLRAALRLWFAQ--RRLE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 227 DLEQKLCLQEQDAAVVKSMKSELmrmprmERELKRLHEENTHLREMKETNGllTEELEGLQRKLSRqekmqealvdLELE 306
Cdd:COG4913 292 LLEAELEELRAELARLEAELERL------EARLDALREELDELEAQIRGNG--GDRLEQLEREIER----------LERE 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 307 KEKLLAKLQSWENLDQTMGLNLrtPEDLSRFVvELQQReltlkeknnsITSSARGLEKVQQQLQDEVRQANAQLLEERKK 386
Cdd:COG4913 354 LEERERRRARLEALLAALGLPL--PASAEEFA-ALRAE----------AAALLEALEEELEALEEALAEAEAALRDLRRE 420
|
250 260
....*....|....*....|....*....
gi 52783152 387 RETHEALARRLQKRNALLTKERDGMRAIL 415
Cdd:COG4913 421 LRELEAEIASLERRKSNIPARLLALRDAL 449
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
65-406 |
9.86e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 9.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 65 IQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEK---MREQLERHRLCKQNLDAV 141
Cdd:TIGR00618 305 IEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVatsIREISCQQHTLTQHIHTL 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 142 SQQ---LREQEDSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQrkwQEANQKIQELQASQDER 218
Cdd:TIGR00618 385 QQQkttLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCA---AAITCTAQCEKLEKIHL 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 219 AEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLREMKETNGLLTEELEG-LQRKLSRQEKMQ 297
Cdd:TIGR00618 462 QESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRrMQRGEQTYAQLE 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 298 EALVDLELEKEKLLAKLQSWENLDQtmglnlrtpedlsrfvvELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVrqaN 377
Cdd:TIGR00618 542 TSEEDVYHQLTSERKQRASLKEQMQ-----------------EIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLT---E 601
|
330 340
....*....|....*....|....*....
gi 52783152 378 AQLLEERKKRETHEALARRLQKRNALLTK 406
Cdd:TIGR00618 602 KLSEAEDMLACEQHALLRKLQPEQDLQDV 630
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
50-530 |
1.15e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 50 QLEERAEQIRSKsyLIQVEREKMQMELSHKRARVELERAASTNARNYEREvDRNQELLARIRQLQECEATAEEkMREQLE 129
Cdd:PRK03918 218 ELREELEKLEKE--VKELEELKEEIEELEKELESLEGSKRKLEEKIRELE-ERIEELKKEIEELEEKVKELKE-LKEKAE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 130 RHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQlsamDQKVQVKRLESEKQELK---EQLELQQRKWQEANQ 206
Cdd:PRK03918 294 EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEkrlEELEERHELYEEAKA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 207 KIQELQASQDERAEHEqkIKDLEQKLCLQEQDAAVVKSMKSELMRM-PRMERELKRLHEENTHLREMKET----NGLLTE 281
Cdd:PRK03918 370 KKEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKITARiGELKKEIKELKKAIEELKKAKGKcpvcGRELTE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 282 ELEG---------LQRKLSRQEKMQEALVDLELEK---EKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQREL--- 346
Cdd:PRK03918 448 EHRKelleeytaeLKRIEKELKEIEEKERKLRKELrelEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAeey 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 347 -TLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSY------- 418
Cdd:PRK03918 528 eKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFyneylel 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 419 ---DSELTQTEYSTQLTQR-LWEAEDMVQKVHAHSSEMEAQLSQAL-----EELGVQKQRADTLEMELKMLKAQTSSAES 489
Cdd:PRK03918 608 kdaEKELEREEKELKKLEEeLDKAFEELAETEKRLEELRKELEELEkkyseEEYEELREEYLELSRELAGLRAELEELEK 687
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 52783152 490 SfsfcKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLT 530
Cdd:PRK03918 688 R----REEIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
50-403 |
1.19e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 50 QLEERAEQIRSKSYLIQVEREKMQMELSHKRARV-ELERAASTNARNY-------EREVDRNQELLARIRQLQECEATAE 121
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIeELEEEIEELRERFgdapvdlGNAEDFLEELREERDELREREAELE 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 122 EKMREQLERHRLCKQNLDA-----VSQQLREQE--DSLASAREMISSLKGRVSELQLSAMDQKVQVKRLESEKqELKEQL 194
Cdd:PRK02224 433 ATLRTARERVEEAEALLEAgkcpeCGQPVEGSPhvETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLV-EAEDRI 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 195 ELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLclqEQDAAVVKSMKSELMRmpRMERELKRLHEENTHLREmke 274
Cdd:PRK02224 512 ERLEERREDLEELIAERRETIEEKRERAEELRERAAEL---EAEAEEKREAAAEAEE--EAEEAREEVAELNSKLAE--- 583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 275 tnglLTEELEGLQRKLSRQEKMQEALVDLELEKEKL--LAKLQSwENLDQTMGLNLRTPEDLSRF----VVELQQRELTL 348
Cdd:PRK02224 584 ----LKERIESLERIRTLLAAIADAEDEIERLREKReaLAELND-ERRERLAEKRERKRELEAEFdearIEEAREDKERA 658
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 52783152 349 KEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNAL 403
Cdd:PRK02224 659 EEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEAL 713
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
387-591 |
1.22e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 387 RETHEALARRLQKRNALltkerDGMRAILGSYDSELTQTEYSTQL--TQRLWEAEDMVQKVHAHSSEMEAQLSQALEELG 464
Cdd:COG4913 238 ERAHEALEDAREQIELL-----EPIRELAERYAAARERLAELEYLraALRLWFAQRRLELLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 465 VQKQRADTLEMELKMLKAQTSSAESsfsfckEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDY-------NQ 537
Cdd:COG4913 313 RLEARLDALREELDELEAQIRGNGG------DRLEQLEREIERLERELEERERRRARLEALLAALGLPLPAsaeefaaLR 386
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 52783152 538 SRTKVLHMSLNPISMA-RQRQHEDHDRLQEECERLRGLVHALE----RGGPIPADLEAA 591
Cdd:COG4913 387 AEAAALLEALEEELEAlEEALAEAEAALRDLRRELRELEAEIAslerRKSNIPARLLAL 445
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
269-530 |
1.54e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 269 LREMKETNGLLTEELEGLQRKLSRQEK-MQEALVDLELEKEKLLAKLQSWENLDQTMGLNLRTPEDLSRFVVELQQRELT 347
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENrLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 348 LKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERkkrethealARRLQKRNALLTKERDGMRAILGSYDSELTQTEY 427
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR---------IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 428 STQLtqrlweAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEE 507
Cdd:TIGR02169 827 EKEY------LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE 900
|
250 260
....*....|....*....|...
gi 52783152 508 LEGERSRLEQEKQVLEMQMEKLT 530
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSELK 923
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
102-333 |
1.75e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.81 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 102 RNQELLARIRQLQECEATAEeKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSElqlsamdqkvqvk 181
Cdd:PRK01156 150 QRKKILDEILEINSLERNYD-KLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSI------------- 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 182 rLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKR 261
Cdd:PRK01156 216 -TLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNR 294
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 52783152 262 lhEENTHLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMgLNLRTPED 333
Cdd:PRK01156 295 --NYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQI-LELEGYEM 363
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
356-598 |
1.77e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 356 TSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEYS-TQLTQR 434
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 435 LWEAEDMVQKVHAHSSEMEaqlSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSR 514
Cdd:COG4942 99 LEAQKEELAELLRALYRLG---RQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 515 LEQEKQVLEMQMEKLTLQGDYNQSRtkvlhmsLNPISMARQRQHEDHDRLQEECERLRGLVHALERGGPIPADLEAASSL 594
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKL-------LARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
....
gi 52783152 595 PSSK 598
Cdd:COG4942 249 AALK 252
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
159-529 |
1.93e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 159 ISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQasqDERAEHEQKIKDLEQklclqEQD 238
Cdd:TIGR04523 234 IEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELE---KQLNQLKSEISDLNN-----QKE 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 239 AAVVKSMKSELMRMPRMERELK-RLHEENTHLREMKETNGLLTEELEGLQ-RKLSRQEKMQEALVDLELEKEKLLAKLQS 316
Cdd:TIGR04523 306 QDWNKELKSELKNQEKKLEEIQnQISQNNKIISQLNEQISQLKKELTNSEsENSEKQRELEEKQNEIEKLKKENQSYKQE 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 317 WENLdqtmglnlrtpedlsrfvvELQQRELTLKEKNNsitssarglEKVQQQLQDEVRqanaqlleerKKRETHEALARR 396
Cdd:TIGR04523 386 IKNL-------------------ESQINDLESKIQNQ---------EKLNQQKDEQIK----------KLQQEKELLEKE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 397 LQKRNALLTKERDGMrailgsydSELTQTEYSTQLTqrLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRADTLEME 476
Cdd:TIGR04523 428 IERLKETIIKNNSEI--------KDLTNQDSVKELI--IKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 52783152 477 LKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKL 529
Cdd:TIGR04523 498 LKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKD 550
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
69-579 |
2.21e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 69 REKMQMELSHKRARVELERAASTNAR--NYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLR 146
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKDLHERlnGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 147 EQEDSLASAREMISSLKGRVSelqlsamDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELqasQDERAEHEQKIK 226
Cdd:PRK02224 262 DLRETIAETEREREELAEEVR-------DLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL---EDRDEELRDRLE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 227 DLEQKLCLQEQDAAvvksmkselmrmpRMERELKRLHEENTHLREMKETnglLTEELEGLQRKLsrqEKMQEALVDLELE 306
Cdd:PRK02224 332 ECRVAAQAHNEEAE-------------SLREDADDLEERAEELREEAAE---LESELEEAREAV---EDRREEIEELEEE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 307 KEKLLAKLQ-SWENLDQTMGLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLE--KVQQQLQDEVRQANAQLLEE 383
Cdd:PRK02224 393 IEELRERFGdAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEagKCPECGQPVEGSPHVETIEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 384 -RKKRETHEAlarrlqkrnalltkERDGMRAILGSYDSELTQTEystqltqRLWEAEDMVQKVHAHSSEMEAQLSQALEE 462
Cdd:PRK02224 473 dRERVEELEA--------------ELEDLEEEVEEVEERLERAE-------DLVEAEDRIERLEERREDLEELIAERRET 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 463 LGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKV 542
Cdd:PRK02224 532 IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERL 611
|
490 500 510
....*....|....*....|....*....|....*..
gi 52783152 543 LHMSLNPISMARQRQhedhDRLQEECERLRGLVHALE 579
Cdd:PRK02224 612 REKREALAELNDERR----ERLAEKRERKRELEAEFD 644
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
49-271 |
3.07e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 49 MQLEERA---EQIRSKSYLIQVER----EKMQMELSHK--RARVELERAASTNARNYEREVDRNQEL--LARIRQLQEcE 117
Cdd:pfam17380 353 IRQEERKrelERIRQEEIAMEISRmrelERLQMERQQKneRVRQELEAARKVKILEEERQRKIQQQKveMEQIRAEQE-E 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 118 ATAEEKMREQLERHRlckqNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQK----VQVKRLESEKQELKEQ 193
Cdd:pfam17380 432 ARQREVRRLEEERAR----EMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKraeeQRRKILEKELEERKQA 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 194 LELQQRKWQEANQKIQELQ---ASQDERAEHEQ---KIKDLEQKLCLQEQdAAVVKSMKSELMRMPRmERELKRLHEENT 267
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQkaiYEEERRREAEEerrKQQEMEERRRIQEQ-MRKATEERSRLEAMER-EREMMRQIVESE 585
|
....
gi 52783152 268 HLRE 271
Cdd:pfam17380 586 KARA 589
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
37-295 |
3.79e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 37 ASGSLQKQYEYHMQLEERAEQIRSK-SYLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIrqlqE 115
Cdd:PRK04863 849 LERALADHESQEQQQRSQLEQAKEGlSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQL----E 924
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 116 CEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQ-----KVQVKRLESEKQEL 190
Cdd:PRK04863 925 PIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDlneklRQRLEQAEQERTRA 1004
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 191 KEQLELQQRKWQEANQKIQELQAS----QDERAEHEQKIKDLEQKLCLQEQDAAvvKSMKSELMrmprmerelKRLHEEN 266
Cdd:PRK04863 1005 REQLRQAQAQLAQYNQVLASLKSSydakRQMLQELKQELQDLGVPADSGAEERA--RARRDELH---------ARLSANR 1073
|
250 260
....*....|....*....|....*....
gi 52783152 267 THLREMKETNGLLTEELEGLQRKLSRQEK 295
Cdd:PRK04863 1074 SRRNQLEKQLTFCEAEMDNLTKKLRKLER 1102
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
70-427 |
4.14e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 70 EKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEATAEEKMREQLERHRlckqNLDAVSQQLREQE 149
Cdd:pfam17380 286 ERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERER----ELERIRQEERKRE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 150 DSLASAREMISSLKgRVSELQLSAMDQKVQVKRLESE---KQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIK 226
Cdd:pfam17380 362 LERIRQEEIAMEIS-RMRELERLQMERQQKNERVRQEleaARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRL 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 227 DleqklclQEQDAAVVKSMKSELMRMPRMERelkrlheenthLREMKETNGLLTEELEGLQRKLSRQEKMQEALVDLELE 306
Cdd:pfam17380 441 E-------EERAREMERVRLEEQERQQQVER-----------LRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 307 --KEKLLAKLQSWENLDQTMglnlrtpEDLSRFVVELQQRELTLKEKNNSITSSARglekvqQQLQDEVRQANaqllEER 384
Cdd:pfam17380 503 erKQAMIEEERKRKLLEKEM-------EERQKAIYEEERRREAEEERRKQQEMEER------RRIQEQMRKAT----EER 565
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 52783152 385 KKRETHEalarrlqkrnalltKERDGMRAILgsyDSELTQTEY 427
Cdd:pfam17380 566 SRLEAME--------------REREMMRQIV---ESEKARAEY 591
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
36-379 |
4.38e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 4.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 36 SASGSLQKQYEYHMQLEERAEqIRSKSYLIQVEREKMQMELSHKRARV-ELERAASTNARNYEREVDRNQELLARIRQlq 114
Cdd:PRK04863 270 VAADYMRHANERRVHLEEALE-LRRELYTSRRQLAAEQYRLVEMARELaELNEAESDLEQDYQAASDHLNLVQTALRQ-- 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 115 eceataeekmREQLERhrlCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSamdqkvqVKRLESEKQELKEQL 194
Cdd:PRK04863 347 ----------QEKIER---YQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEE-------VDELKSQLADYQQAL 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 195 ELQQRK---WQEANQKIQE------------------LQASQDERAEHEQKIKDLEQKLCLQ-------EQDAAVVKSMK 246
Cdd:PRK04863 407 DVQQTRaiqYQQAVQALERakqlcglpdltadnaedwLEEFQAKEQEATEELLSLEQKLSVAqaahsqfEQAYQLVRKIA 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 247 SELMRMP--RMERELKRLHEENTHLremketngllTEELEGLQRKLSRQEKMQEalvdLELEKEKLLAKLQswenldQTM 324
Cdd:PRK04863 487 GEVSRSEawDVARELLRRLREQRHL----------AEQLQQLRMRLSELEQRLR----QQQRAERLLAEFC------KRL 546
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 52783152 325 GLNLRTPEDLSRFVVELQQRELTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQ 379
Cdd:PRK04863 547 GKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
49-232 |
6.15e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 6.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 49 MQLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDRNQELLARIRQLQECEAtaeekmreql 128
Cdd:COG3206 208 VDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEA---------- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 129 erhrlckqNLDAVSQQLREQEDSLASAREMISSLKGRV-SELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQK 207
Cdd:COG3206 278 --------ELAELSARYTPNHPDVIALRAQIAALRAQLqQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPEL 349
|
170 180
....*....|....*....|....*
gi 52783152 208 IQELQASQDERAEHEQKIKDLEQKL 232
Cdd:COG3206 350 EAELRRLEREVEVARELYESLLQRL 374
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
104-567 |
6.27e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 6.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 104 QELLARIRQLQ---ECEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMDQKVQV 180
Cdd:pfam01576 5 EEMQAKEEELQkvkERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 181 KRLESEKQELKEQLELQQRKWQEANQKIQELQAS----QDERAEHEQKIKDLEQK-LCLQEQDAAVVKSMKSELMRMPRM 255
Cdd:pfam01576 85 EEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAArqklQLEKVTTEAKIKKLEEDiLLLEDQNSKLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 256 ERELKRLHEENTHLREMKETNGLLTEELEGlqrKLSRQEKMQealvdLELEKEKLLAKLQSWENLDQTMGLNLRTPEdls 335
Cdd:pfam01576 165 TSNLAEEEEKAKSLSKLKNKHEAMISDLEE---RLKKEEKGR-----QELEKAKRKLEGESTDLQEQIAELQAQIAE--- 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 336 rFVVELQQRELTLKEKNNSITSSArgleKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAIL 415
Cdd:pfam01576 234 -LRAQLAKKEEELQAALARLEEET----AQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTEL 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 416 -GSYDSELTQTEYSTQLTQRLWE----AEDMVQKVHAHSSEMEAQLSQALEELGVQKQRA----------------DTLE 474
Cdd:pfam01576 309 eDTLDTTAAQQELRSKREQEVTElkkaLEEETRSHEAQLQEMRQKHTQALEELTEQLEQAkrnkanlekakqalesENAE 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 475 MELKMLKAQTSSAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMAR 554
Cdd:pfam01576 389 LQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLES 468
|
490
....*....|...
gi 52783152 555 QRQhEDHDRLQEE 567
Cdd:pfam01576 469 QLQ-DTQELLQEE 480
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
50-557 |
6.32e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 6.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 50 QLEERAEQIRSKSYLIQVEREKMQMELSHKRARVELERAASTNARNYEREVDrnqellARIRQLQECEATAEEKMREQLE 129
Cdd:pfam01576 79 ELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTE------AKIKKLEEDILLLEDQNSKLSK 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 130 RHRLCKQNLDAVSQQLREQEDSLASARE-------MISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQ 202
Cdd:pfam01576 153 ERKLLEERISEFTSNLAEEEEKAKSLSKlknkheaMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIA 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 203 EAN----QKIQELQASQDeRAEHEQKIKDLEQKLC--LQEQDAAVVKSMKSELMRMPRMERELKRLHEENTHLRE----- 271
Cdd:pfam01576 233 ELRaqlaKKEEELQAALA-RLEEETAQKNNALKKIreLEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTeledt 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 272 ------MKETNGLLTEELEGLQRKLSRQEKMQEALVdLELEKEKLLAKLQSWENLDQTmglnlrtpedlSRFVVELQQRE 345
Cdd:pfam01576 312 ldttaaQQELRSKREQEVTELKKALEEETRSHEAQL-QEMRQKHTQALEELTEQLEQA-----------KRNKANLEKAK 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 346 LTLKEKNNSITSSARGLEKVQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQ- 424
Cdd:pfam01576 380 QALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKl 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 425 TEYSTQLTQRLWEAEDMVQKVHAHSSEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTSSAESSFSFCKEEVDALRLK 504
Cdd:pfam01576 460 SKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGT 539
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 52783152 505 VEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTKVLHMSLNPISMARQRQ 557
Cdd:pfam01576 540 LEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQ 592
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
97-293 |
6.36e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.84 E-value: 6.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 97 EREVDRNqELLAR-IRQLQECEATAEEKMREQLERHRLCKQNLDAVSQQLREQEDSLASAREMISSLKGRVSELQLSAMD 175
Cdd:COG2433 360 PPDVDRD-EVKARvIRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEE 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 176 QKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQASQDERAEHEQKIKDLEQKlcLQEQDAAVVKSMKSELMRMPRM 255
Cdd:COG2433 439 KDERIERLERELSEARSEERREIRKDREISRLDREIERLERELEEERERIEELKRK--LERLKELWKLEHSGELVPVKVV 516
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 52783152 256 ER----ELKRLHEEnthlREMKETNGLLTEELEGLQRKLSRQ 293
Cdd:COG2433 517 EKftkeAIRRLEEE----YGLKEGDVVYLRDASGAGRSTAEL 554
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
187-405 |
6.43e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 39.89 E-value: 6.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 187 KQELKEQLE-LQQRKWQEANQK--IQELQASQ---DERAEHEQKIKDLEQKLclqeQDAAvvKSMKSelmrmprMERELK 260
Cdd:PRK11281 38 EADVQAQLDaLNKQKLLEAEDKlvQQDLEQTLallDKIDRQKEETEQLKQQL----AQAP--AKLRQ-------AQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 261 RLHEENThlREMKETngLLTEELEGLQRKLsrqekmqealvdlelekEKLLAKLQSW-ENLDQTMGL--NLRT-PEDLSR 336
Cdd:PRK11281 105 ALKDDND--EETRET--LSTLSLRQLESRL-----------------AQTLDQLQNAqNDLAEYNSQlvSLQTqPERAQA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 52783152 337 FVVELQQR--ELTLKEKNNSITSSARGLEKvQQQLQDEVRQANAQLLEERKKRETHEALARRLQKRNALLT 405
Cdd:PRK11281 164 ALYANSQRlqQIRNLLKGGKVGGKALRPSQ-RVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLT 233
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
211-438 |
7.76e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 7.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 211 LQASQDERAEHEQKIKDLEQKLCLQEQDAAVVKSMKSELmrmprmERELKRLHEENTHL-REMKETNGLLTEELEGLQRK 289
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKAL------LKQLAALERRIAALaRRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 290 LSRQEKMQEALVDLELEKEKLLAKLQSWENLDQTMGLNlrTPEDLSRFVVELQqrelTLKEKNNSITSSARGLEKVQQQL 369
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLL--SPEDFLDAVRRLQ----YLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 52783152 370 QDEVRQANAQLLEERKKRETHEALARRLQKRNALLTKERDGMRAILGSYDSELTQTEYSTQLTQRLWEA 438
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| COG5391 |
COG5391 |
Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function ... |
6-262 |
9.42e-03 |
|
Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only];
Pssm-ID: 227680 [Multi-domain] Cd Length: 524 Bit Score: 39.01 E-value: 9.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 6 ENTTVLSSLRSLNNFISQRMEGTSglDVSTSASGSLQKQYEYHMQLEERAEQIRSKSYLIQVEREKMQMELSHKRARVE- 84
Cdd:COG5391 245 NSKSWESHSTLLSSFIENRKSVPT--PLSLDLTSTTQELDMERKELNESTSKAIHNILSIFSLFEKILIQLESEEESLTr 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 85 -------LERAASTNARNYEREVDRNQELLA----------------RIRQLQECEATAEEKM--REQLE-RHRLCKQNL 138
Cdd:COG5391 323 lleslnnLLLLVLNFSGVFAKRLEQNQNSILnegvvqaetlrsslkeLLTQLQDEIKSRESLIltDSNLEkLTDQNLEDV 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783152 139 DAVSQQLR---EQEDSLASA--REMISSLKGRVSELQLSAMDQKVQVKRLESEKQELKEQLELQQRKWQEANQKIQELQa 213
Cdd:COG5391 403 EELSRSLRknsSQRAVVSQQpeGLTSFSKLSYKLRDFVQEKSRSKSIESLQQDKEKLEEQLAIAEKDAQEINEELKNEL- 481
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 52783152 214 sqderaEHEQKIKDLEQKLCLQEQDAAVVKSMKSELMRMPRMERELKRL 262
Cdd:COG5391 482 ------KFFFSVRNSDLEKILKSVADSHIEWAEENLEIWKSVKEQLDRL 524
|
|
| |
