|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
477-1151 |
1.01e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 112.46 E-value: 1.01e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 477 EDLQRRLEEFEGERERLQRMADSAAS----LEQQLEQVKLTLLQRDQQLEALQQEHL-------DLMKQLTLTQEALQSR 545
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAelqeLEEKLEELRLEVSELEEEIEELQKELYalaneisRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 546 EQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREE 625
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 626 LAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDqlISELKATRKRLDSELKELRQELMQVHGEKRT 705
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAE--LEELEEELEELQEELERLEEALEELREELEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 706 AEAELSRLHREVAQVRQHMADLEGHLQSAQ----------KERDEMETHL----QSLQFDKEQMVAVTEA-NEALKKQIE 770
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallKNQSGLSGILgvlsELISVDEGYEAAIEAAlGGRLQAVVV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 771 ELQQEARKAITEQKQKM----------RRLGSDLTSAQKEMKTKHkayENAVGILSRRLQEALAAKEAADAELGQLR--- 837
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNElgrvtflpldSIKGTEIQGNDREILKNI---EGFLGVAKDLVKFDPKLRKALSYLLGGVLvvd 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 838 --AQGGSSDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESR----GFRKKIKR 911
Cdd:TIGR02168 630 dlDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEkalaELRKELEE 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 912 LEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHL---VQALQA 988
Cdd:TIGR02168 710 LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAeaeIEELEA 789
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 989 SLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELA 1068
Cdd:TIGR02168 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE 869
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1069 EARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDL 1148
Cdd:TIGR02168 870 ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY 949
|
...
gi 530401913 1149 SMT 1151
Cdd:TIGR02168 950 SLT 952
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
455-1006 |
3.16e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 100.78 E-value: 3.16e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 455 EADMLDQEAAFMQIQEAKTMVEEdLQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQ 534
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEE-LEAELEELEAELEELEA---ELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 535 LTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEE 614
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 615 TSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQ 694
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 695 ELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQF---------------------DKE 753
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAalllaglrglagavavligveAAY 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 754 QMVAVTEANEALKKQIEELQQEARKAITEQKQKmrrlgsDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAEL 833
Cdd:COG1196 537 EAALEAALAAALQNIVVEDDEVAAAAIEYLKAA------KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 834 GQLRAQGGSSDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRgfrkkIKRLE 913
Cdd:COG1196 611 ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE-----LEELA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 914 ESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKE 993
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
570
....*....|...
gi 530401913 994 KEKVNSLKEQVAA 1006
Cdd:COG1196 766 ERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
479-1149 |
4.18e-20 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 97.06 E-value: 4.18e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 479 LQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLmkqltltQEALQSREQSLDALQTHYDE 558
Cdd:TIGR02169 292 VKEKIGELEAEIASLER---SIAEKERELEDAEERLAKLEAEIDKLLAEIEEL-------EREIEEERKRRDKLTEEYAE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 559 LQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQ 638
Cdd:TIGR02169 362 LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 639 ETAALKKQMQKIKEQFLQQKVMVEAYRRDatskdqlISELKATRKRLDSELKELRQELMQVHGEKRTAEaelSRLHREVA 718
Cdd:TIGR02169 442 EKEDKALEIKKQEWKLEQLAADLSKYEQE-------LYDLKEEYDRVEKELSKLQRELAEAEAQARASE---ERVRGGRA 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 719 QVRQHMADLEG-HLQSAQ--KERDEMETHLQSLQFDKEQMVaVTEANEALKKQIEELQQE-ARKAITEQKQKMRRLGSDL 794
Cdd:TIGR02169 512 VEEVLKASIQGvHGTVAQlgSVGERYATAIEVAAGNRLNNV-VVEDDAVAKEAIELLKRRkAGRATFLPLNKMRDERRDL 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 795 TSAQKE--------MKTKHKAYENAVGI------------LSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQ 854
Cdd:TIGR02169 591 SILSEDgvigfavdLVEFDPKYEPAFKYvfgdtlvvedieAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSR 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 855 ALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLG 934
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 935 QSNAALREHNSILETALAKREADLVQLNLQVQAVlqrkeeEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAakVEAGHN 1014
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDL------EARLSHSRIPEIQAELSKLEEEVSRIEARLRE--IEQKLN 822
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1015 RRHFKAASLElsEVKKELQAKEHLVQ----KLQAEADDLQIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPV 1090
Cdd:TIGR02169 823 RLTLEKEYLE--KEIQELQEQRIDLKeqikSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE 900
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 530401913 1091 GNQEMENLKWEVDQKEREIQSLKQQLDLTEQQgrkelegLQQLLQNVKSELEMAQEDLS 1149
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSELKAKLEALEEE-------LSEIEDPKGEDEEIPEEELS 952
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
226-791 |
4.46e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 96.93 E-value: 4.46e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 226 LEGQLEALSLEASQALK------EKAELQAQLAALSTKLQaqvecshssQQRQDSLSSEVDTLKQSCWDLERAMTDLQNM 299
Cdd:COG1196 198 LERQLEPLERQAEKAERyrelkeELKELEAELLLLKLREL---------EAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 300 LEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISS 379
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 380 LQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHL---KLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEA 456
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAlraAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 457 DMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLT 536
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 537 LTQEALQSREQSLDALQTH-------------YDELQARLGELQGEAASREDTICLLQNEK-----------IILEAALQ 592
Cdd:COG1196 509 GVKAALLLAGLRGLAGAVAvligveaayeaalEAALAAALQNIVVEDDEVAAAAIEYLKAAkagratflpldKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 593 AAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKD 672
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 673 QLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEghlQSAQKERDEMETHLQSLQFDK 752
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE---ALEEQLEAEREELLEELLEEE 745
|
570 580 590
....*....|....*....|....*....|....*....
gi 530401913 753 EQMVAVTEANEALKKQIEELQQEARKAiteqKQKMRRLG 791
Cdd:COG1196 746 ELLEEEALEELPEPPDLEELERELERL----EREIEALG 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
480-1152 |
7.96e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 96.28 E-value: 7.96e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 480 QRRLEEfegERERLQRMADSAASLEQQLE----QVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTH 555
Cdd:TIGR02168 178 ERKLER---TRENLDRLEDILNELERQLKslerQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 556 YDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEH 635
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 636 LQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHR 715
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 716 EVAQVRQHMADLEGHLQSAQKERDEMEthLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLT 795
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEEAELKELQAE--LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 796 SAQKEMKTKHKAYENAVGILSRRLQEALAAkeaadaelgQLRAQGGSSDS------SLALHERIQAL-----EAELQAVS 864
Cdd:TIGR02168 493 SLERLQENLEGFSEGVKALLKNQSGLSGIL---------GVLSELISVDEgyeaaiEAALGGRLQAVvvenlNAAKKAIA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 865 HsktLLEKELQEV--IALTSQELEESREKVLELedeLQESRGFRKKIKRLEESNKKL-------------------ALEL 923
Cdd:TIGR02168 564 F---LKQNELGRVtfLPLDSIKGTEIQGNDREI---LKNIEGFLGVAKDLVKFDPKLrkalsyllggvlvvddldnALEL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 924 EHE----------KGKLTGLG--QSNAALREHNSILETA-----LAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQAL 986
Cdd:TIGR02168 638 AKKlrpgyrivtlDGDLVRPGgvITGGSAKTNSSILERRreieeLEEKIEELEEKIAELEKALAELRKELEELEEELEQL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 987 QASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAE 1066
Cdd:TIGR02168 718 RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1067 LAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQG---RKELEGLQQLLQNVKSELEM 1143
Cdd:TIGR02168 798 LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIeslAAEIEELEELIEELESELEA 877
|
....*....
gi 530401913 1144 AQEDLSMTQ 1152
Cdd:TIGR02168 878 LLNERASLE 886
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
480-1072 |
1.59e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 95.39 E-value: 1.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 480 QRRLEEfegERERLQRMADSAASLEQQLEQVKLtllQRDQQLEALQQehldlmkqltltQEALQSREQSLDALqtHYDEL 559
Cdd:COG1196 178 ERKLEA---TEENLERLEDILGELERQLEPLER---QAEKAERYREL------------KEELKELEAELLLL--KLREL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 560 QARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQE 639
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 640 TAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQ 719
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 720 VRQHMADLEGHLQSAQKERDEMETHLQSLQfdkEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQK 799
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELE---EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 800 EMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQG--GSSDSSLALHERIQ-------ALEAELQAVS-HSKTL 869
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLlaGLRGLAGAVAVLIGveaayeaALEAALAAALqNIVVE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 870 LEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILET 949
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 950 A---LAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQAL---QASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASL 1023
Cdd:COG1196 635 AlrrAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALleaEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 530401913 1024 ELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARA 1072
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
210-998 |
7.64e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 89.73 E-value: 7.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 210 AETQEEMLQV---LKEkmrLEGQLEALSLEASQALKEKaELQAQLAALSTKLQAQVecSHSSQQRQDSLSSEVDTLKQSC 286
Cdd:TIGR02168 182 ERTRENLDRLediLNE---LERQLKSLERQAEKAERYK-ELKAELRELELALLVLR--LEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 287 WDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTL 366
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 367 TSKLKASQAEISSLQSVRQWYQQQL----ALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLEN---VSLSQQLTETQHR 439
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELeeleAELEELESRLEELEEQLETLRSKVAQLELQIASLNneiERLEARLERLEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 440 SMKEKGRIAAQLQGI-EADMLDQEAAFMQIQEAKTMVE---EDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLL 515
Cdd:TIGR02168 416 RERLQQEIEELLKKLeEAELKELQAELEELEEELEELQeelERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 516 QRDQQLEALQQEHLDLMKQ-------LTLTQEALQSREQ-----------SLDALQTHYDELQARLGELQGEAASREDTI 577
Cdd:TIGR02168 496 RLQENLEGFSEGVKALLKNqsglsgiLGVLSELISVDEGyeaaieaalggRLQAVVVENLNAAKKAIAFLKQNELGRVTF 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 578 CLLqneKIILEAALQAAKSGKEELDRGARRLEEGTEETSET------------------------LEKLREELAI----- 628
Cdd:TIGR02168 576 LPL---DSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllggvlvvddldnalelAKKLRPGYRIvtldg 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 629 ---------------KSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELR 693
Cdd:TIGR02168 653 dlvrpggvitggsakTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 694 QELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkEQMVAVTEANEALKKQIEELQ 773
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE---AQIEQLKEELKALREALDELR 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 774 QEarkaITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRaqggssdsslALHERI 853
Cdd:TIGR02168 810 AE----LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE----------ELESEL 875
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 854 QALEAELQAVSHSKTLLEKELQEVialtSQELEESREKVLELEDELQESrgfRKKIKRLEESNKKLALELEHEKGKLTGL 933
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELEEL----SEELRELESKRSELRRELEEL---REKLAQLELRLEGLEVRIDNLQERLSEE 948
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 934 GQSNA-ALREHNSILETALAKREADLVQLNLQV--------------QAVLQRKEEEDRQMKHLVQALqASLEKEKEKVN 998
Cdd:TIGR02168 949 YSLTLeEAEALENKIEDDEEEARRRLKRLENKIkelgpvnlaaieeyEELKERYDFLTAQKEDLTEAK-ETLEEAIEEID 1027
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
622-1257 |
5.30e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.91 E-value: 5.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 622 LREELAiksGQVEHLQQEtAALKKQMQKIKEQFLQQKVMVEAYRRDatskdqlisELKATRKRLDSELKELRQELMQVHG 701
Cdd:COG1196 194 ILGELE---RQLEPLERQ-AEKAERYRELKEELKELEAELLLLKLR---------ELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 702 EKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMEthlQSLQFDKEQMVAVTEANEALKKQIEELQQEarkaIT 781
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE---QDIARLEERRRELEERLEELEEELAELEEE----LE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 782 EQKQKMRRLGSDLTSAQKEMKTKHKAYENAvgiLSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQ 861
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEA---EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 862 AvshSKTLLEKELQEVIALTSQELEESREKVLELEDELQEsrgfRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALR 941
Cdd:COG1196 411 A---LLERLERLEEELEELEEALAELEEEEEEEEEALEEA----AEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 942 EHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVnslkEQVAAAKVEAGHNRRHFKAA 1021
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA----LEAALAAALQNIVVEDDEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1022 SLELSEVKKELQAK------EHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEM 1095
Cdd:COG1196 560 AAAIEYLKAAKAGRatflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1096 ENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMKTLLQQ 1175
Cdd:COG1196 640 VTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1176 NQQLKLDLRRGAAKTRKEPkgeasssnpatpikipdcpvpASLLEELLRPPPAVSKEPLKNLNscLQQLKQEMDSLQRQM 1255
Cdd:COG1196 720 ELEEEALEEQLEAEREELL---------------------EELLEEEELLEEEALEELPEPPD--LEELERELERLEREI 776
|
..
gi 530401913 1256 EE 1257
Cdd:COG1196 777 EA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
174-779 |
1.01e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 174 LQAAAAEHQDQGQEVNGEVRSRRDSIcssVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAA 253
Cdd:COG1196 251 LEAELEELEAELAELEAELEELRLEL---EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 254 LSTKLQAQvecshssQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQR 333
Cdd:COG1196 328 LEEELEEL-------EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 334 SMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQM 413
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 414 TQAGLLEHLKLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAfmqiqeaktmVEEDLQRRLEEFEGEReRL 493
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG----------VEAAYEAALEAALAAA-LQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 494 QRMADSAASLEQQLEQVKLTLLQRDQQLEalqqehLDLMKQLTLTQEALQSREQSLDALQTHYD--ELQARLGELQGEAA 571
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLP------LDKIRARAALAAALARGAIGAAVDLVASDlrEADARYYVLGDTLL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 572 SREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIK 651
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 652 EQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHL 731
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVN 783
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 530401913 732 QSAQKERDEMETHLQSLqfdKEQMVAVTEANEALKKQIEELQQEARKA 779
Cdd:COG1196 784 LLAIEEYEELEERYDFL---SEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
204-790 |
6.46e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.49 E-value: 6.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 204 SLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQ-------DSLS 276
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLeelkeelESLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 277 SEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQ-----QMTA 351
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKkleeaELKE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 352 LQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLK-------- 423
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKallknqsg 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 424 ---------------------LENV-----------SLSQQLTETQHRSMKEKGRIA---------AQLQGIEADMLDQE 462
Cdd:TIGR02168 518 lsgilgvlselisvdegyeaaIEAAlggrlqavvveNLNAAKKAIAFLKQNELGRVTflpldsikgTEIQGNDREILKNI 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 463 AAFMQIQEAKTMVEEDLQRRLEEFEG------------ERERLQRMADSAASLEQQL-----------EQVKLTLLQRDQ 519
Cdd:TIGR02168 598 EGFLGVAKDLVKFDPKLRKALSYLLGgvlvvddldnalELAKKLRPGYRIVTLDGDLvrpggvitggsAKTNSSILERRR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 520 QLEalqqehlDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKE 599
Cdd:TIGR02168 678 EIE-------ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 600 ELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFlqqkvmvEAYRRDATSKDQLISELK 679
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-------DELRAELTLLNEEAANLR 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 680 ATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVT 759
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
650 660 670
....*....|....*....|....*....|.
gi 530401913 760 EANEALKKQIEELQQEARKAITEQKQKMRRL 790
Cdd:TIGR02168 904 RELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
295-919 |
6.33e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 6.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 295 DLQNMLEAKNASLASsnNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQ 374
Cdd:COG1196 217 ELKEELKELEAELLL--LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 375 AEISSLQSVRQWYQQQLALAQEARVRLQGEmahiqvgqmtqaglLEHLKLENVSLSQQLTEtqhrsmkekgrIAAQLQGI 454
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEE--------------LAELEEELEELEEELEE-----------LEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 455 EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQ 534
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 535 LTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSgkEELDRGARRLEEGTEE 614
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA--RLLLLLEAEADYEGFL 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 615 TSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVmveayRRDATSKDQLISELKATRKRLDSELKELRQ 694
Cdd:COG1196 508 EGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV-----VEDDEVAAAAIEYLKAAKAGRATFLPLDKI 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 695 elmqvhgEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHlqslqfdkeqmVAVTEANEALKKQIEELQQ 774
Cdd:COG1196 583 -------RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR-----------TLVAARLEAALRRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 775 EARKAITEQKQkmrrlgsdltSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQ 854
Cdd:COG1196 645 RLREVTLEGEG----------GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530401913 855 ALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKL 919
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
154-791 |
8.14e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 8.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 154 VNGQEIPADTLGQFPSIKDVLQAAAAEHQDQGQEVNGEVRSRRDSICSSVS----LESSAAETQEEMLQVLKEKMRLEGQ 229
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAeleeLESRLEELEEQLETLRSKVAQLELQ 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 230 LEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQrqDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLAS 309
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 310 SNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALqsqlqqvqlerttltSKLKASQAEISSLQSVRQWYQQ 389
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQ---------------SGLSGILGVLSELISVDEGYEA 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 390 QLALAqearvrLQGEMAHIQVGQMTQAGL-LEHLK---------LENVSLSQQLTETQHRSMKEKGR-----------IA 448
Cdd:TIGR02168 538 AIEAA------LGGRLQAVVVENLNAAKKaIAFLKqnelgrvtfLPLDSIKGTEIQGNDREILKNIEgflgvakdlvkFD 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 449 AQLQGIEADMLDQEAAFMQIQEAKTM-VEEDLQRRLEEFEGER-------------------ERLQRMADsaasLEQQLE 508
Cdd:TIGR02168 612 PKLRKALSYLLGGVLVVDDLDNALELaKKLRPGYRIVTLDGDLvrpggvitggsaktnssilERRREIEE----LEEKIE 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 509 QVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILE 588
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 589 AALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVE--AYRR 666
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEdlEEQI 847
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 667 DATSKDQL-----ISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEM 741
Cdd:TIGR02168 848 EELSEDIEslaaeIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 530401913 742 ETHLQSLQFD--------KEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLG 791
Cdd:TIGR02168 928 ELRLEGLEVRidnlqerlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELG 985
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
174-778 |
1.70e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.48 E-value: 1.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 174 LQAAAAEHQDQGQEVNGEVRSRRDSIcssVSLESSAAETQEEMLQVLKEKmrLEGQLEALSLEASQALKEKAELQAQLAA 253
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARL---ERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEELER 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 254 LSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNN---------DLQVAEEQYQRL 324
Cdd:TIGR02168 459 LEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgilgvlsELISVDEGYEAA 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 325 MAKV--EDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEI-SSLQSVRQWYQQQLALAQEARVRL 401
Cdd:TIGR02168 539 IEAAlgGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREIlKNIEGFLGVAKDLVKFDPKLRKAL 618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 402 QGEMAHIQVGQMTQAGL----LEHLKLENVSLSQQLTETQHRSMKEKGRIAAQLQG-------IEADMLDQEAAFMQIQE 470
Cdd:TIGR02168 619 SYLLGGVLVVDDLDNALelakKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILErrreieeLEEKIEELEEKIAELEK 698
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 471 AKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLD 550
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 551 ALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKS 630
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 631 GQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELR--------------QEL 696
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELReklaqlelrlegleVRI 938
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 697 MQVHG--------EKRTAEAELSRLHREVAQVRQHMADLEGHLQS-------------AQKERdemethlqsLQFDKEQM 755
Cdd:TIGR02168 939 DNLQErlseeyslTLEEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlaaieeyeELKER---------YDFLTAQK 1009
|
650 660
....*....|....*....|...
gi 530401913 756 VAVTEANEALKKQIEELQQEARK 778
Cdd:TIGR02168 1010 EDLTEAKETLEEAIEEIDREARE 1032
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
211-1052 |
2.94e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.64 E-value: 2.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 211 ETQEEMLQVLKEKMRLEGQLEALSLEAsqALKEKAELQAQLAALS---TKLQAQVecshssQQRQDSLSSEVDTLKQSCW 287
Cdd:TIGR02169 208 EKAERYQALLKEKREYEGYELLKEKEA--LERQKEAIERQLASLEeelEKLTEEI------SELEKRLEEIEQLLEELNK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 288 DLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMakvEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLT 367
Cdd:TIGR02169 280 KIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL---EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 368 SKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEmahiqvgqmtqaglLEHLKLENVSLSQqlteTQHRSMKEKGRI 447
Cdd:TIGR02169 357 EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK--------------LEKLKREINELKR----ELDRLQEELQRL 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 448 AAQLQGIEADMLDQEAAFMQIQEAKtmveEDLQRRLEEFEGERERLQRMADSAaslEQQLEQVKLTLLQRDQQLEALQQE 527
Cdd:TIGR02169 419 SEELADLNAAIAGIEAKINELEEEK----EDKALEIKKQEWKLEQLAADLSKY---EQELYDLKEEYDRVEKELSKLQRE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 528 hldlMKQLTLTQEALQSREQSLDALQTHYDE-------LQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEE 600
Cdd:TIGR02169 492 ----LAEAEAQARASEERVRGGRAVEEVLKAsiqgvhgTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELL 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 601 LDRGARRLEEGTEETSETLEKLREELAiKSGQVEHLqQETAALKKQMQKIKEQFLQQKVMV---EAYRR----------- 666
Cdd:TIGR02169 568 KRRKAGRATFLPLNKMRDERRDLSILS-EDGVIGFA-VDLVEFDPKYEPAFKYVFGDTLVVediEAARRlmgkyrmvtle 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 667 -DATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHL 745
Cdd:TIGR02169 646 gELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 746 QSLQFDKEQmvaVTEANEALKKQIEELQQEarkaITEQKQKMRRLGSDLtsaqKEMKTKHKAYENAVGILSRRLqealaA 825
Cdd:TIGR02169 726 EQLEQEEEK---LKERLEELEEDLSSLEQE----IENVKSELKELEARI----EELEEDLHKLEEALNDLEARL-----S 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 826 KEAADAELGQLRAQggsSDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIaltsQELEESREKVLELEDELQESRGF 905
Cdd:TIGR02169 790 HSRIPEIQAELSKL---EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ----EQRIDLKEQIKSIEKEIENLNGK 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 906 RKKIKRLEESNKKLALELEHEKGKLTG----LGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKH 981
Cdd:TIGR02169 863 KEELEEELEELEAALRDLESRLGDLKKerdeLEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530401913 982 LVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRrhfkaASLELSEVKKELQAKEHLVQKLQAEADDLQIR 1052
Cdd:TIGR02169 943 DEEIPEEELSLEDVQAELQRVEEEIRALEPVNML-----AIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
458-1071 |
3.04e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 68.40 E-value: 3.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 458 MLDQEAAFMQIQEAKTMVEE--DLQRRLEEFEGERERLQRMADSAASLEQQLEQV-KLTLLQRDQQLEALQQEHLDLMKQ 534
Cdd:COG4913 217 MLEEPDTFEAADALVEHFDDleRAHEALEDAREQIELLEPIRELAERYAAARERLaELEYLRAALRLWFAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 535 LTLTQEALQSREQSLDALQTHYDELQARLGELQGEaasredticllqnekiILEAALQAAKSGKEELDRgarrleegtee 614
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDELEAQ----------------IRGNGGDRLEQLEREIER----------- 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 615 tsetlekLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKvmveayrrdatskdqliSELKATRKRLDSELKELRQ 694
Cdd:COG4913 350 -------LERELEERERRRARLEALLAALGLPLPASAEEFAALR-----------------AEAAALLEALEEELEALEE 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 695 ELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAqkeRDEMETHLQ----SLQFDKEqMVAVTEANEALKKQIE 770
Cdd:COG4913 406 ALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL---RDALAEALGldeaELPFVGE-LIEVRPEEERWRGAIE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 771 --------------ELQQEARKAITEQKQKMR----RLGSDLTSAQK----------EMKTK-HKAYENAVGILSRRL-- 819
Cdd:COG4913 482 rvlggfaltllvppEHYAAALRWVNRLHLRGRlvyeRVRTGLPDPERprldpdslagKLDFKpHPFRAWLEAELGRRFdy 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 820 --------------------QEALAAKEAADAELGQLRAQ---GGSSDSSLA-LHERIQALEAELQAVSHSKTLLEKELQ 875
Cdd:COG4913 562 vcvdspeelrrhpraitragQVKGNGTRHEKDDRRRIRSRyvlGFDNRAKLAaLEAELAELEEELAEAEERLEALEAELD 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 876 EVIAL-----TSQELEESREKVLELEDELQEsrgFRKKIKRLEESN---KKLALELEHEKGKLTGLGQSNAALREHNSIL 947
Cdd:COG4913 642 ALQERrealqRLAEYSWDEIDVASAEREIAE---LEAELERLDASSddlAALEEQLEELEAELEELEEELDELKGEIGRL 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 948 ETALAKREADLVQLNLQVQAVLQRKEEE--------------DRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAgh 1013
Cdd:COG4913 719 EKELEQAEEELDELQDRLEAAEDLARLElralleerfaaalgDAVERELRENLEERIDALRARLNRAEEELERAMRAF-- 796
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530401913 1014 nRRHFKAASLELSEvkkELQAKEHLVQKLQA-EADDL-----QIREGKHS---QEIAQFQAELAEAR 1071
Cdd:COG4913 797 -NREWPAETADLDA---DLESLPEYLALLDRlEEDGLpeyeeRFKELLNEnsiEFVADLLSKLRRAI 859
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
678-1168 |
9.54e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 66.63 E-value: 9.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 678 LKATRKRLDSELKELRQELM---QVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETH---LQSLQFD 751
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKrteNIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELkeeIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 752 KEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGS----------------DLTSAQKEMKTKHKAYENAVGIL 815
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkekaeeyiklsefyeEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 816 SRRLQEALAAKEAADAELG---QLRAQGGSSDSSLALHERIQALEAELQavSHSKTLLEKELQEVIAltsqELEESREKV 892
Cdd:PRK03918 327 EERIKELEEKEERLEELKKklkELEKRLEELEERHELYEEAKAKKEELE--RLKKRLTGLTPEKLEK----ELEELEKAK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 893 LELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGqsnAALREHNSilETALAKREADLVQlnlqVQAVLQRK 972
Cdd:PRK03918 401 EEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCG---RELTEEHR--KELLEEYTAELKR----IEKELKEI 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 973 EEEDRQMKHLVQALQASLEKEKE--KVNSLKEQVAAAKVE-AGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDL 1049
Cdd:PRK03918 472 EEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1050 QIREGKhSQEIAQFQAELAEARAQLqllqkqldeqlskqpvgNQEMENLKWE-VDQKEREIQSLKQQLD--LTEQQGRKE 1126
Cdd:PRK03918 552 EELKKK-LAELEKKLDELEEELAEL-----------------LKELEELGFEsVEELEERLKELEPFYNeyLELKDAEKE 613
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 530401913 1127 LEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNN 1168
Cdd:PRK03918 614 LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
642-1171 |
1.04e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 1.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 642 ALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVR 721
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 722 QHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEM 801
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 802 KTkhkayenavgiLSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHER--IQALEAELQAVSHSKTLLEKELQEVIA 879
Cdd:TIGR02168 396 AS-----------LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELkeLQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 880 LTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKL---ALELEHEKGKLTGLGQSNAALREHNSILETALAkrea 956
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsegVKALLKNQSGLSGILGVLSELISVDEGYEAAIE---- 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 957 dlVQLNLQVQAVLQRKEEEDRQmkhlvqALQASLEKEKEKVNSLKE------QVAAAKVEAGHNRRHFKAASLELSEVKK 1030
Cdd:TIGR02168 541 --AALGGRLQAVVVENLNAAKK------AIAFLKQNELGRVTFLPLdsikgtEIQGNDREILKNIEGFLGVAKDLVKFDP 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1031 ELQ-------AKEHLVQKLQaEADDLQIREGKH-------------------------------SQEIAQFQAELAEARA 1072
Cdd:TIGR02168 613 KLRkalsyllGGVLVVDDLD-NALELAKKLRPGyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEELEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1073 QLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVK----------SELE 1142
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTeleaeieeleERLE 771
|
570 580
....*....|....*....|....*....
gi 530401913 1143 MAQEDLSMTQKDKFMLQAKVSELKNNMKT 1171
Cdd:TIGR02168 772 EAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
476-1011 |
1.90e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.47 E-value: 1.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 476 EEDLQRRLEEFEGERERLQRMADSAASLEQQL-------EQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQS 548
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELPELreeleklEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 549 LDALQTHYDELQ---ARLGELQGEAASREDTICLLQNEKIILeAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREE 625
Cdd:PRK03918 268 IEELKKEIEELEekvKELKELKEKAEEYIKLSEFYEEYLDEL-REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 626 LAIKSGQVEHLQ------QETAALKKQMQKIKEQFLQQKV-----MVEAYRRDATSKDQLISELKATRKRLDSELKELRQ 694
Cdd:PRK03918 347 LKELEKRLEELEerhelyEEAKAKKEELERLKKRLTGLTPeklekELEELEKAKEEIEEEISKITARIGELKKEIKELKK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 695 ELMQVHGEKRTA------------EAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQS---LQFDKEQMVAVT 759
Cdd:PRK03918 427 AIEELKKAKGKCpvcgrelteehrKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKeseLIKLKELAEQLK 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 760 EANEALKK-QIEELQQEARKAiTEQKQKMRRLGSDLTSAQKEMKtKHKAYENAVGILSRRLQealAAKEAADAELGQLRA 838
Cdd:PRK03918 507 ELEEKLKKyNLEELEKKAEEY-EKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLD---ELEEELAELLKELEE 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 839 QGGSSDSSlaLHERIQALEA---ELQAVSHSKTLLEKELQEvIALTSQELEESREKVLELEDELQESRgfrkkiKRLEES 915
Cdd:PRK03918 582 LGFESVEE--LEERLKELEPfynEYLELKDAEKELEREEKE-LKKLEEELDKAFEELAETEKRLEELR------KELEEL 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 916 NKKLALElEHEKgkltglgqsnaaLREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQ--ASLEKE 993
Cdd:PRK03918 653 EKKYSEE-EYEE------------LREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKelEKLEKA 719
|
570
....*....|....*...
gi 530401913 994 KEKVNSLKEQVAAAKVEA 1011
Cdd:PRK03918 720 LERVEELREKVKKYKALL 737
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
439-1142 |
3.16e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 64.99 E-value: 3.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 439 RSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVE-EDLQRRLEEFEGErERLQRMADSAASLEQQLEQVKLTLLQR 517
Cdd:TIGR00618 160 AKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAElLTLRSQLLTLCTP-CMPDTYHERKQVLEKELKHLREALQQT 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 518 DQQLEALQQEHLdlmkqltlTQEALQSREQSLDALQTHYDELQ---ARLGELQGEAASREDTICLLQNEKIILEAALQAA 594
Cdd:TIGR00618 239 QQSHAYLTQKRE--------AQEEQLKKQQLLKQLRARIEELRaqeAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQ 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 595 KSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQK-IKEQFLQQKVMVEAYRRDATSKDQ 673
Cdd:TIGR00618 311 RIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATsIREISCQQHTLTQHIHTLQQQKTT 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 674 LISELKATRKRLDSELKE-------------LRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDE 740
Cdd:TIGR00618 391 LTQKLQSLCKELDILQREqatidtrtsafrdLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 741 METHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLG--SDLTSAQKEMKTKHKAYENAVGILSRR 818
Cdd:TIGR00618 471 REQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDnpGPLTRRMQRGEQTYAQLETSEEDVYHQ 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 819 LQEALAAKEAADAELGQLRaqggssDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDE 898
Cdd:TIGR00618 551 LTSERKQRASLKEQMQEIQ------QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 899 LQESRgfrkKIKRLEESNKKLALELEHEKGKLTGLGQSNaalrehnsILETALAKREADLvQLNLQVQAVLQRKEEEDRQ 978
Cdd:TIGR00618 625 QDLQD----VRLHLQQCSQELALKLTALHALQLTLTQER--------VREHALSIRVLPK-ELLASRQLALQKMQSEKEQ 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 979 MKHLVQALQASLEKEKEKVNSLKEqvaaakveaghNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHsQ 1058
Cdd:TIGR00618 692 LTYWKEMLAQCQTLLRELETHIEE-----------YDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKA-R 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1059 EIAQFQAELAEARAQLQllqkqldeqlskqpvgNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKEL----------- 1127
Cdd:TIGR00618 760 TEAHFNNNEEVTAALQT----------------GAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIpsdedilnlqc 823
|
730
....*....|....*
gi 530401913 1128 EGLQQLLQNVKSELE 1142
Cdd:TIGR00618 824 ETLVQEEEQFLSRLE 838
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
621-1148 |
3.84e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.70 E-value: 3.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 621 KLREELAIKSGQVEHLQQEtaalKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVH 700
Cdd:PRK03918 211 EISSELPELREELEKLEKE----VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 701 GEKRTAEaELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEAR--- 777
Cdd:PRK03918 287 ELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHElye 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 778 --KAITEQKQKMRRLGSDLTSAQ-----KEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSS---DSSL 847
Cdd:PRK03918 366 eaKAKKEELERLKKRLTGLTPEKlekelEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcGREL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 848 ALHERIQALEAELQAVSHsktlLEKELQEVIALTSQELEESR--EKVLELEDELQESRGFRKKIKRLEESNKKLALE-LE 924
Cdd:PRK03918 446 TEEHRKELLEEYTAELKR----IEKELKEIEEKERKLRKELRelEKVLKKESELIKLKELAEQLKELEEKLKKYNLEeLE 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 925 HEKGKLTGLGQSNAALREHNSILETALaKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKvnSLKEqv 1004
Cdd:PRK03918 522 KKAEEYEKLKEKLIKLKGEIKSLKKEL-EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEE--RLKE-- 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1005 aaakVEAGHNRrhfkaaSLELSEVKKELQAKEHLVQKLQAEADdlqiregKHSQEIAQFQAELAEARAQLQLLqkqldeq 1084
Cdd:PRK03918 597 ----LEPFYNE------YLELKDAEKELEREEKELKKLEEELD-------KAFEELAETEKRLEELRKELEEL------- 652
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530401913 1085 lsKQPVGNQEMENLKWEVDQKEREIQSLkqqldlteqqgRKELEGLQQLLQNVKSELEMAQEDL 1148
Cdd:PRK03918 653 --EKKYSEEEYEELREEYLELSRELAGL-----------RAELEELEKRREEIKKTLEKLKEEL 703
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
362-1053 |
6.46e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.98 E-value: 6.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 362 ERTTLTSKLKASQAEISSLQSVRQWYQQQlalaqeARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQHRSM 441
Cdd:pfam15921 279 EITGLTEKASSARSQANSIQSQLEIIQEQ------ARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLV 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 442 KEKGRIAAQLQgiEADMLDQEAAFMQIQEAKTMVeeDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQL 521
Cdd:pfam15921 353 LANSELTEART--ERDQFSQESGNLDDQLQKLLA--DLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEV 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 522 EALQQehldLMKqlTLTQEALQSREQSLDALQTHYDELQaRLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEL 601
Cdd:pfam15921 429 QRLEA----LLK--AMKSECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 602 DRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKK---QMQKIKEQFLQQKVMVEAYRRDATSKDQLISE- 677
Cdd:pfam15921 502 TASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNvqtECEALKLQMAEKDKVIEILRQQIENMTQLVGQh 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 678 ------LKATRKRLDSELKELRQELMQVHGEK-------RTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMeth 744
Cdd:pfam15921 582 grtagaMQVEKAQLEKEINDRRLELQEFKILKdkkdakiRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQL--- 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 745 LQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALA 824
Cdd:pfam15921 659 LNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 825 AKEAADAELGQLR----AQGGSSDSSLALHERIQALEAELQAVSHSKTLLEKELQeviALTSQElEESREKVLELEDELQ 900
Cdd:pfam15921 739 KRGQIDALQSKIQfleeAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELE---VLRSQE-RRLKEKVANMEVALD 814
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 901 ESR----GFRKKIKRLEESNKKLALELEHEKGKLTGLG-QSNAALREHnsILETALAKREADLVQLNLQVQAVLQR---- 971
Cdd:pfam15921 815 KASlqfaECQDIIQRQEQESVRLKLQHTLDVKELQGPGyTSNSSMKPR--LLQPASFTRTHSNVPSSQSTASFLSHhsrk 892
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 972 ----KEEEDRQMKHLVQALQASLEKEkEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEAD 1047
Cdd:pfam15921 893 tnalKEDPTRDLKQLLQELRSVINEE-PTVQLSKAEDKGRAPSLGALDDRVRDCIIESSLRSDICHSSSNSLQTEGSKSS 971
|
....*.
gi 530401913 1048 DLQIRE 1053
Cdd:pfam15921 972 ETCSRE 977
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
851-1149 |
8.27e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 8.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 851 ERIQALEAELQ-----AVSHSKTLLEKELQEV---IALTSQELEESREKVLELEDELQESRGFRKKI-KRLEESNKKLAL 921
Cdd:TIGR02169 211 ERYQALLKEKReyegyELLKEKEALERQKEAIerqLASLEEELEKLTEEISELEKRLEEIEQLLEELnKKIKDLGEEEQL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 922 ELEHEKGKLTG-LGQSNAALREHNSILETAlakrEADLVQLNLQVQAVLQRKEEEDRQmkhlVQALQASLEKEKEKVNSL 1000
Cdd:TIGR02169 291 RVKEKIGELEAeIASLERSIAEKERELEDA----EERLAKLEAEIDKLLAEIEELERE----IEEERKRRDKLTEEYAEL 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1001 KEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARAqlqllqkq 1080
Cdd:TIGR02169 363 KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA-------- 434
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530401913 1081 ldeqlsKQPVGNQEMENLKWEVDQKEREIQSLKQQLDlteqQGRKELEGLQQLLQNVKSELEMAQEDLS 1149
Cdd:TIGR02169 435 ------KINELEEEKEDKALEIKKQEWKLEQLAADLS----KYEQELYDLKEEYDRVEKELSKLQRELA 493
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
427-782 |
1.59e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 1.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 427 VSLSQQLTETQHR--SMK-EKGRIAAQLQGIEADMldqEAAFMQIQEAKTMVEEdLQRRLEEFEGERERLQRMAdsaASL 503
Cdd:TIGR02169 670 RSEPAELQRLRERleGLKrELSSLQSELRRIENRL---DELSQELSDASRKIGE-IEKEIEQLEQEEEKLKERL---EEL 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 504 EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSL-----DALQTHYDELQARLGELQGEAASREDTIC 578
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLshsriPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 579 LLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQK 658
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 659 VMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHgEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKER 738
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE-EIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEY 981
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 530401913 739 DEMETHLQSLqfdKEQMVAVTEANEALKKQIEELQQEARKAITE 782
Cdd:TIGR02169 982 EEVLKRLDEL---KEKRAKLEEERKAILERIEEYEKKKREVFME 1022
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
273-814 |
2.51e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.85 E-value: 2.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 273 DSLSSEVDTLKqscwDLERAMTDLQNMLEAknaslassnndLQVAEEQYQRLMAKVEDMQ-----RSMLSKDN---TVHD 344
Cdd:COG4913 228 DALVEHFDDLE----RAHEALEDAREQIEL-----------LEPIRELAERYAAARERLAeleylRAALRLWFaqrRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 345 LRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQsvRQWYQ---QQLALAQEARVRLQGEMAHIQVGQMTQAGLLEH 421
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELE--AQIRGnggDRLEQLEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 422 LKLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKtmveEDLQRRLEEFEGERERL-QRMADSA 500
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL----RELEAEIASLERRKSNIpARLLALR 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 501 ASLEQQLE-------------QVK------------------LTLLQRDQQ----LEALQQEHLdlmkQLTLTQEALQSR 545
Cdd:COG4913 447 DALAEALGldeaelpfvgeliEVRpeeerwrgaiervlggfaLTLLVPPEHyaaaLRWVNRLHL----RGRLVYERVRTG 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 546 EQSLDALQTHYDELQARL--------GELQGEAASREDTIC------LLQNEKIILEAALQAAKSGKEELD--RGARRLE 609
Cdd:COG4913 523 LPDPERPRLDPDSLAGKLdfkphpfrAWLEAELGRRFDYVCvdspeeLRRHPRAITRAGQVKGNGTRHEKDdrRRIRSRY 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 610 EGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQF--LQQKVMVEAYRRDATSKDQLISELKATRKRLD- 686
Cdd:COG4913 603 VLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERReaLQRLAEYSWDEIDVASAEREIAELEAELERLDa 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 687 --SELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQS-LQFDKEQMVavteANE 763
Cdd:COG4913 683 ssDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLeLRALLEERF----AAA 758
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 530401913 764 ALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGI 814
Cdd:COG4913 759 LGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDA 809
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
478-1006 |
3.47e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.59 E-value: 3.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 478 DLQRRLEEFEGERERLQRMADSAASLEQQLEQvkltllqRDQQLEALQQEHLDLmkqltltQEALQSREQSLDALQTHYD 557
Cdd:PRK02224 217 ELDEEIERYEEQREQARETRDEADEVLEEHEE-------RREELETLEAEIEDL-------RETIAETEREREELAEEVR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 558 ELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQ 637
Cdd:PRK02224 283 DLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 638 QETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREV 717
Cdd:PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 718 AQVRQHMAdlEGHLQSAQKERDEMEtHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAiteqkqkmrrlgSDLTSA 797
Cdd:PRK02224 443 EEAEALLE--AGKCPECGQPVEGSP-HVETIEEDRERVEELEAELEDLEEEVEEVEERLERA------------EDLVEA 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 798 QKEMKTKHKAYENavgiLSRRLQEALAAKEAADAELGQLRAQGGSSDSSlALHERIQALEAELQAvshsktllEKELQEV 877
Cdd:PRK02224 508 EDRIERLEERRED----LEELIAERRETIEEKRERAEELRERAAELEAE-AEEKREAAAEAEEEA--------EEAREEV 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 878 IALTS--QELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALRE--HNSILETALAK 953
Cdd:PRK02224 575 AELNSklAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAefDEARIEEARED 654
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 530401913 954 REaDLVQLNLQVQAVLQRKEEEdrqmKHLVQALQASLEKEKEKVNSLKEQVAA 1006
Cdd:PRK02224 655 KE-RAEEYLEQVEEKLDELREE----RDDLQAEIGAVENELEELEELRERREA 702
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
497-722 |
3.78e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.16 E-value: 3.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 497 ADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDT 576
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 577 ICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAiksGQVEHLQQETAALKKQMQKIKEQFLQ 656
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARR---EQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530401913 657 QKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQ 722
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
217-919 |
1.04e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 59.98 E-value: 1.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 217 LQVLKEKMRLEGQLEALSLEAS----------QALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSC 286
Cdd:TIGR00618 183 LMEFAKKKSLHGKAELLTLRSQlltlctpcmpDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 287 WDLERAMTDLQNMLEAknASLASSNNDLQVAEEQYQRLMAKVEdmqrsmlskdntvhDLRQQMTALQSQLQQVQLERTTL 366
Cdd:TIGR00618 263 KQLRARIEELRAQEAV--LEETQERINRARKAAPLAAHIKAVT--------------QIEQQAQRIHTELQSKMRSRAKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 367 TSKLKASQAEISSLQSVRQWYQQqlALAQEARVRLQGEmahiqvgqmTQAGLLEHlklenvsLSQQLTETQH-RSMKEKG 445
Cdd:TIGR00618 327 LMKRAAHVKQQSSIEEQRRLLQT--LHSQEIHIRDAHE---------VATSIREI-------SCQQHTLTQHiHTLQQQK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 446 RIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQLEALQ 525
Cdd:TIGR00618 389 TTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQR---YAELCAAAITCTAQCEKLEKIHLQESA 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 526 QEhLDLMKQLTLTQEALQSREQSLDALQTHydelqaRLGELQGEAASREDTiCLLQNEKIILEAALQAAKSGKEELDRGA 605
Cdd:TIGR00618 466 QS-LKEREQQLQTKEQIHLQETRKKAVVLA------RLLELQEEPCPLCGS-CIHPNPARQDIDNPGPLTRRMQRGEQTY 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 606 RRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYR----RDATSKDQLISELKAT 681
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQdlteKLSEAEDMLACEQHAL 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 682 RKRLDSEL--KELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADL------EGHLQSAQKERDEMETHLQSLQFDKE 753
Cdd:TIGR00618 618 LRKLQPEQdlQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALsirvlpKELLASRQLALQKMQSEKEQLTYWKE 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 754 Q-------MVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYEN-------AVGILSRRL 819
Cdd:TIGR00618 698 MlaqcqtlLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEahfnnneEVTAALQTG 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 820 QEALAAKEAADAELGQLRAQGGSSDSSLALHEriQALEAELQAVSHSKTLLEKELQEV---IALTSQELEESREKVLELE 896
Cdd:TIGR00618 778 AELSHLAAEIQFFNRLREEDTHLLKTLEAEIG--QEIPSDEDILNLQCETLVQEEEQFlsrLEEKSATLGEITHQLLKYE 855
|
730 740
....*....|....*....|...
gi 530401913 897 DELQESRGFRKKIKRLEESNKKL 919
Cdd:TIGR00618 856 ECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
596-924 |
1.48e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 1.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 596 SGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETA-ALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQL 674
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREkAERYQALLKEKREYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 675 ISELKATRK---RLDSELKELRQELMQVHGEKRTAEAELSRL-HREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQ- 749
Cdd:TIGR02169 243 ERQLASLEEeleKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEe 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 750 ---FDKEQMVAVTEANEALKKQIEELQQEARK---AITEQKQKMRRLGSDLTSAQKEMKT---KHKAYENAVGILSRRLQ 820
Cdd:TIGR02169 323 rlaKLEAEIDKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELEEVDKEFAEtrdELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 821 EALAAKEAADAELGQLRAQGGSsdsslaLHERIQALEAELQAVSHSKtlleKELQEVIALTSQELEESREKvleLEDELQ 900
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELAD------LNAAIAGIEAKINELEEEK----EDKALEIKKQEWKLEQLAAD---LSKYEQ 469
|
330 340
....*....|....*....|....
gi 530401913 901 ESRGFRKKIKRLEESNKKLALELE 924
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELA 493
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
638-1152 |
1.64e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.36 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 638 QETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLH--- 714
Cdd:pfam15921 138 QSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHfrs 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 715 -------------REVAQVRQHMADLEGHLQSAQKE-RDEMETHLQSLQFDKEQMV----------------AVTEANeA 764
Cdd:pfam15921 218 lgsaiskilreldTEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQHQDRIEQLIseheveitgltekassARSQAN-S 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 765 LKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSD 844
Cdd:pfam15921 297 IQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLD 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 845 SSLA-----LHERIQALEAELQ--------------AVSHSKTLLEKELQEVIALTS--------------------QEL 885
Cdd:pfam15921 377 DQLQklladLHKREKELSLEKEqnkrlwdrdtgnsiTIDHLRRELDDRNMEVQRLEAllkamksecqgqmerqmaaiQGK 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 886 EESREKVLELEDELQESRGFRKKIKRlEESNKKLALELEHEKgkltgLGQSNAALREHNSILETALAKREADLVQLNLQV 965
Cdd:pfam15921 457 NESLEKVSSLTAQLESTKEMLRKVVE-ELTAKKMTLESSERT-----VSDLTASLQEKERAIEATNAEITKLRSRVDLKL 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 966 QAVLQRKEEED--RQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKehlvqklQ 1043
Cdd:pfam15921 531 QELQHLKNEGDhlRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR-------R 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1044 AEADDLQIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQG 1123
Cdd:pfam15921 604 LELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF 683
|
570 580
....*....|....*....|....*....
gi 530401913 1124 RKELEGLQQLLQNVKSELEMAQEDLSMTQ 1152
Cdd:pfam15921 684 RNKSEEMETTTNKLKMQLKSAQSELEQTR 712
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
627-1072 |
2.47e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 58.24 E-value: 2.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 627 AIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELmqvhgEKRTA 706
Cdd:COG4717 42 FIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAEL-----EELRE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 707 EAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMvavteanEALKKQIEELQQEARKAITEQKQK 786
Cdd:COG4717 117 ELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEEL-------EELEAELAELQEELEELLEQLSLA 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 787 MRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALA--AKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQAVS 864
Cdd:COG4717 190 TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEelEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 865 HSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKI----KRLEESNKKLALELEHEKGKLTGLGQSNAAL 940
Cdd:COG4717 270 SLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEeleeEELEELLAALGLPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 941 REHNSILETalAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKA 1020
Cdd:COG4717 350 QELLREAEE--LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE 427
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 530401913 1021 ASL--ELSEVKKELQAKEHLVQKLQAEADDL--QIREGKHSQEIAQFQAELAEARA 1072
Cdd:COG4717 428 EELeeELEELEEELEELEEELEELREELAELeaELEQLEEDGELAELLQELEELKA 483
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
484-1166 |
2.53e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 2.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 484 EEFEGERERLQRMADSAaslEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLtQEALQSREQSLDALQthYDELQARL 563
Cdd:TIGR02169 166 AEFDRKKEKALEELEEV---EENIERLDLIIDEKRQQLERLRREREKAERYQAL-LKEKREYEGYELLKE--KEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 564 GELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETsetlekLREELAIKSGQVEHLQQETAAL 643
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR------VKEKIGELEAEIASLERSIAEK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 644 KKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQH 723
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 724 MADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKT 803
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 804 KHKAYEnavgILSRRLQEALAAKEAADAELGQLR-AQGGSSDSSLALHERIQALEAELqavshsKTLLEKELQEVIALTS 882
Cdd:TIGR02169 474 LKEEYD----RVEKELSKLQRELAEAEAQARASEeRVRGGRAVEEVLKASIQGVHGTV------AQLGSVGERYATAIEV 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 883 QELEESREKVLELEDELQESRGF--RKKIKRLE--ESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADL 958
Cdd:TIGR02169 544 AAGNRLNNVVVEDDAVAKEAIELlkRRKAGRATflPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDT 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 959 VqlnlqvqaVLQRKEEEDRQMkhlVQALQASLEKEkekvnsLKEQVAAakVEAGHNRRhfKAASLELSEVKKELQAKEHL 1038
Cdd:TIGR02169 624 L--------VVEDIEAARRLM---GKYRMVTLEGE------LFEKSGA--MTGGSRAP--RGGILFSRSEPAELQRLRER 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1039 VQKLQAEADDLQIREGKHSQEIAQFQAELAEARaqlqllqkqldeqlskqpvgnqemenlkwevdQKEREIQSLKQQLDL 1118
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDAS--------------------------------RKIGEIEKEIEQLEQ 730
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 530401913 1119 TEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELK 1166
Cdd:TIGR02169 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLE 778
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
504-1053 |
5.27e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 57.49 E-value: 5.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 504 EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSR-------EQSLDALQTHYDELQARLGELQGEAASREDT 576
Cdd:pfam01576 11 EEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAEtelcaeaEEMRARLAARKQELEEILHELESRLEEEEER 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 577 ICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQ 656
Cdd:pfam01576 91 SQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 657 QKVMVEAYRRDATSKDQLISELKATRKRLDselkELRQELMQVhgeKRTAEAELSRLHREVAQVRQHMADLEGHLqsaQK 736
Cdd:pfam01576 171 EEEKAKSLSKLKNKHEAMISDLEERLKKEE----KGRQELEKA---KRKLEGESTDLQEQIAELQAQIAELRAQL---AK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 737 ERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQ--EARKAITEQKQKMRR-LGSDL-------------TSAQKE 800
Cdd:pfam01576 241 KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEdlESERAARNKAEKQRRdLGEELealkteledtldtTAAQQE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 801 MKTKHkayENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSdsslaLHERIQALEAELQAVSHSKTLLEKE---LQEV 877
Cdd:pfam01576 321 LRSKR---EQEVTELKKALEEETRSHEAQLQEMRQKHTQALEE-----LTEQLEQAKRNKANLEKAKQALESEnaeLQAE 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 878 IALTSQELEESREKVLELEDELQE-----SRGFRKKIKRLEESNkKLALELEHEKGKLtglgqsnaalrehnSILETALA 952
Cdd:pfam01576 393 LRTLQQAKQDSEHKRKKLEGQLQElqarlSESERQRAELAEKLS-KLQSELESVSSLL--------------NEAEGKNI 457
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 953 KREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQAsLEKEKekvNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKEL 1032
Cdd:pfam01576 458 KLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQ-LEDER---NSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKL 533
|
570 580
....*....|....*....|....*...
gi 530401913 1033 Q-------AKEHLVQKLQAEADDLQIRE 1053
Cdd:pfam01576 534 EedagtleALEEGKKRLQRELEALTQQL 561
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
446-923 |
1.40e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 1.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 446 RIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQ 525
Cdd:PRK02224 311 AVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 526 QEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTIcllqNEKIILEAALQAAKSGKEELDRGa 605
Cdd:PRK02224 391 EEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV----EEAEALLEAGKCPECGQPVEGSP- 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 606 rrleegteetsetlekLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKD------QLISELK 679
Cdd:PRK02224 466 ----------------HVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEErredleELIAERR 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 680 ATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMEThlqslqfdkeqMVAVT 759
Cdd:PRK02224 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-----------IRTLL 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 760 EANEALKKQIEELQqEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKayENAVGILSRRLQEALAAKEAADAELGQLRAQ 839
Cdd:PRK02224 599 AAIADAEDEIERLR-EKREALAELNDERRERLAEKRERKRELEAEFD--EARIEEAREDKERAEEYLEQVEEKLDELREE 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 840 GGSsdsslaLHERIQALEAELQavshsktllekelqevialtsqELEESREKVLELEDELQESRGFRKKIKRLEESNKKL 919
Cdd:PRK02224 676 RDD------LQAEIGAVENELE----------------------ELEELRERREALENRVEALEALYDEAEELESMYGDL 727
|
....
gi 530401913 920 ALEL 923
Cdd:PRK02224 728 RAEL 731
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
469-1171 |
2.34e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.36 E-value: 2.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 469 QEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQS 548
Cdd:pfam02463 224 EYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 549 LDALQTHYD-----ELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRgaRRLEEGTEETSETLEKLR 623
Cdd:pfam02463 304 KLERRKVDDeeklkESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEK--LQEKLEQLEEELLAKKKL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 624 EELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATR--KRLDSELKELRQELMQVHG 701
Cdd:pfam02463 382 ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIElkQGKLTEEKEELEKQELKLL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 702 EKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSL-------------------------------QF 750
Cdd:pfam02463 462 KDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGlkvllalikdgvggriisahgrlgdlgvaveNY 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 751 DKEQMVAVTEANEALKKQIEElQQEARKAITEQKQKMRRLGSDLTSAQKEMKtkhKAYENAVGILSRRLQEALAAKEAAD 830
Cdd:pfam02463 542 KVAISTAVIVEVSATADEVEE-RQKLVRALTELPLGARKLRLLIPKLKLPLK---SIAVLEIDPILNLAQLDKATLEADE 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 831 AELGQLRAQGGSSDSSLA-LHERIQALEAELQAVShSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKI 909
Cdd:pfam02463 618 DDKRAKVVEGILKDTELTkLKESAKAKESGLRKGV-SLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILR 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 910 KRLEESNKKLALELEHEKGKLTGLGQSNAALRE--HNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQ 987
Cdd:pfam02463 697 RQLEIKKKEQREKEELKKLKLEAEELLADRVQEaqDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKEL 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 988 ASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKhsqEIAQFQAEL 1067
Cdd:pfam02463 777 AEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKE---EQKLEKLAE 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1068 AEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQED 1147
Cdd:pfam02463 854 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKY 933
|
730 740
....*....|....*....|....
gi 530401913 1148 LSMTQKDKFMLQAKVSELKNNMKT 1171
Cdd:pfam02463 934 EEEPEELLLEEADEKEKEENNKEE 957
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
492-1149 |
2.65e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 55.23 E-value: 2.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 492 RLQRMADSAASLEQQLEQVKLTLLQrdqqleaLQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEaa 571
Cdd:pfam12128 235 GIMKIRPEFTKLQQEFNTLESAELR-------LSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDE-- 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 572 sredticlLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEklrEELAIKSGQVEHLQQETAALKKQMQKIK 651
Cdd:pfam12128 306 --------LNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQ---EQLPSWQSELENLEERLKALTGKHQDVT 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 652 EQFLQQKVMVEayRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTA-EAELSRLHREVAQVRQHMADLEGH 730
Cdd:pfam12128 375 AKYNRRRSKIK--EQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQlEAGKLEFNEEEYRLKSRLGELKLR 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 731 LQSAQKERDEMethLQSLQFDkEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYEN 810
Cdd:pfam12128 453 LNQATATPELL---LQLENFD-ERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 811 AVGILSRRLQEALAAKEAADAELGQL--RAQGGSSD-------SSLALHERIQALEAELQAVSHSKTL-LEKELQEVIAL 880
Cdd:pfam12128 529 LFPQAGTLLHFLRKEAPDWEQSIGKVisPELLHRTDldpevwdGSVGGELNLYGVKLDLKRIDVPEWAaSEEELRERLDK 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 881 TSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQS-----NAALREHNSILETALAKRE 955
Cdd:pfam12128 609 AEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSekdkkNKALAERKDSANERLNSLE 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 956 ADLVQLNLQVQAVLQRKEEEDRQMK-HLVQALQASLEKEKEKVNSLKEQVAAAKVEAghnRRHFKAASlelSEVKKELQA 1034
Cdd:pfam12128 689 AQLKQLDKKHQAWLEEQKEQKREARtEKQAYWQVVEGALDAQLALLKAAIAARRSGA---KAELKALE---TWYKRDLAS 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1035 KehlvqklqaeaDDLQIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPvgnQEMENLKWEVDQKEREIQSLKQ 1114
Cdd:pfam12128 763 L-----------GVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWL---QRRPRLATQLSNIERAISELQQ 828
|
650 660 670
....*....|....*....|....*....|....*
gi 530401913 1115 QLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLS 1149
Cdd:pfam12128 829 QLARLIADTKLRRAKLEMERKASEKQQVRLSENLR 863
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
603-922 |
4.23e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 4.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 603 RGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQE---------------------TAALKKQMQKIKEQFLQQKVMV 661
Cdd:TIGR02169 660 RAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSElrrienrldelsqelsdasrkIGEIEKEIEQLEQEEEKLKERL 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 662 EAYRRDATSKDQLISELKATRKRLDSELKELRQELMQV------------HGEKRTAEAELSRLHREVAQVRQHMADLEG 729
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLeealndlearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQ 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 730 HLQSAQKERDEMETHLQSLQFD----KEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGsDLTSAQKEMKTKH 805
Cdd:TIGR02169 820 KLNRLTLEKEYLEKEIQELQEQridlKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG-DLKKERDELEAQL 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 806 KAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQAVSHSKTLLEKELQ---EVIALTS 882
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRalePVNMLAI 978
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 530401913 883 QELEESREKVLELEDELQ----ESRGFRKKIKRLEESNKKLALE 922
Cdd:TIGR02169 979 QEYEEVLKRLDELKEKRAkleeERKAILERIEEYEKKKREVFME 1022
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
378-796 |
4.34e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.57 E-value: 4.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 378 SSLQSVRQWY--QQQLALAQEARVRLQGEMAHIQVGQmtqagllEHLKLENVSLSQQLTETQHrSMKEKGRIAAQLQGIE 455
Cdd:COG3096 286 RALELRRELFgaRRQLAEEQYRLVEMARELEELSARE-------SDLEQDYQAASDHLNLVQT-ALRQQEKIERYQEDLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 456 ADMLDQEAAFMQIQEAktmvEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQehldlmkql 535
Cdd:COG3096 358 ELTERLEEQEEVVEEA----AEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEK--------- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 536 tlTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGArrleegteET 615
Cdd:COG3096 425 --ARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQ--------AW 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 616 SETLEKLRE--ELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQL---ISELKATRKRLDSELK 690
Cdd:COG3096 495 QTARELLRRyrSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELeelLAELEAQLEELEEQAA 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 691 ELRQELMQVHGEKRTAEAELSRLH------REVAQVRQHMADLEG-HLQSAQKERDEMET---HLQSLQFDKEQMVavtE 760
Cdd:COG3096 575 EAVEQRSELRQQLEQLRARIKELAarapawLAAQDALERLREQSGeALADSQEVTAAMQQlleREREATVERDELA---A 651
|
410 420 430
....*....|....*....|....*....|....*.
gi 530401913 761 ANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTS 796
Cdd:COG3096 652 RKQALESQIERLSQPGGAEDPRLLALAERLGGVLLS 687
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
621-1146 |
6.07e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.87 E-value: 6.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 621 KLREELAIKSGQVEHLQQETAALKKQMQKIKEQflQQKVMVEayrrdatskdqlISELKATRKRLDSELKELRQELMQVH 700
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKN--IDKFLTE------------IKKKEKELEKLNNKYNDLKKQKEELE 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 701 GEKRTAEAELSRLHREVAQVRQHMADLEgHLQSAQKERDEMETHLQSlqfdkeQMVAVTEANEALKKQIEELQQEARK-- 778
Cdd:TIGR04523 173 NELNLLEKEKLNIQKNIDKIKNKLLKLE-LLLSNLKKKIQKNKSLES------QISELKKQNNQLKDNIEKKQQEINEkt 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 779 -AITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSrRLQEALAAKEAADAELGQLRAQGGSSDsslaLHERIQALE 857
Cdd:TIGR04523 246 tEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK-ELEKQLNQLKSEISDLNNQKEQDWNKE----LKSELKNQE 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 858 AELQAVSHSKTLLEK---ELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKG----KL 930
Cdd:TIGR04523 321 KKLEEIQNQISQNNKiisQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINdlesKI 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 931 TGLGQSNAALREHNSILET---ALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAA 1007
Cdd:TIGR04523 401 QNQEKLNQQKDEQIKKLQQekeLLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1008 KVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSK 1087
Cdd:TIGR04523 481 KQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLE 560
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530401913 1088 QPVG--NQEMENLKWE---VDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQE 1146
Cdd:TIGR04523 561 KEIDekNKEIEELKQTqksLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKK 624
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
667-990 |
6.54e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 54.15 E-value: 6.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 667 DATSKDQLISELKA--TRKRLDSELKELRQELmqvhgekrtaEAELSRLHReVAQVRQHMADLEGHLQSAQKERDEMETH 744
Cdd:PRK11281 34 DLPTEADVQAQLDAlnKQKLLEAEDKLVQQDL----------EQTLALLDK-IDRQKEETEQLKQQLAQAPAKLRQAQAE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 745 LQSLQFDKEQMVAVTEANEALKK------QIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMktkhkaYENavgilSRR 818
Cdd:PRK11281 103 LEALKDDNDEETRETLSTLSLRQlesrlaQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAAL------YAN-----SQR 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 819 LQealaakeaadaelgQLRAQ-GGSSDSSLAL-HERIQALEAELQAVSHSKTLLEKELQ---EVIALTSQELEESREKVL 893
Cdd:PRK11281 172 LQ--------------QIRNLlKGGKVGGKALrPSQRVLLQAEQALLNAQNDLQRKSLEgntQLQDLLQKQRDYLTARIQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 894 ELEDELQESRGFRKKiKRLEESNKKLAlelEHEKGKLTGLGQSNAALR---EHNSILETALAK---READLVQLNLQVQA 967
Cdd:PRK11281 238 RLEHQLQLLQEAINS-KRLTLSEKTVQ---EAQSQDEAARIQANPLVAqelEINLQLSQRLLKateKLNTLTQQNLRVKN 313
|
330 340
....*....|....*....|...
gi 530401913 968 VLQRKEEEDRQMKHLVQALQASL 990
Cdd:PRK11281 314 WLDRLTQSERNIKEQISVLKGSL 336
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
344-574 |
1.35e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 344 DLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQvgqmtqagllEHLK 423
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR----------AELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 424 LENVSLSQQLTETQhrSMKEKGRIAAQLQGieADMLDQEAAFMQIQEaktmVEEDLQRRLEEFEGERERLQRMADSAASL 503
Cdd:COG4942 101 AQKEELAELLRALY--RLGRQPPLALLLSP--EDFLDAVRRLQYLKY----LAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530401913 504 EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLtltQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 574
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARL---EKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
374-1000 |
1.72e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 374 QAEISSLQSVRQWYQQQLALAQEARV-RLQGEMAHIQVGQmTQAGLLEHLKLENVSLSQQLTETQHRSMKEKGRIAAQLQ 452
Cdd:COG4913 248 REQIELLEPIRELAERYAAARERLAElEYLRAALRLWFAQ-RRLELLEAELEELRAELARLEAELERLEARLDALREELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 453 GIEAdmldqeaafmQIQEAKTMVEEDLQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQLEALQQEHldlm 532
Cdd:COG4913 327 ELEA----------QIRGNGGDRLEQLEREIERLERELEERER---RRARLEALLAALGLPLPASAEEFAALRAEA---- 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 533 kqltltQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKsgkeeldrgarrleegt 612
Cdd:COG4913 390 ------AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR----------------- 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 613 eetsetlEKLREELAIKSGQV-----------------------------------EHLQQETAALKKQMQKIKEQFLQQ 657
Cdd:COG4913 447 -------DALAEALGLDEAELpfvgelievrpeeerwrgaiervlggfaltllvppEHYAAALRWVNRLHLRGRLVYERV 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 658 KVMVEAYRRDATSKDQLISELK----ATRKRLDSEL------------KELRQELM------QVHGEKR----------- 704
Cdd:COG4913 520 RTGLPDPERPRLDPDSLAGKLDfkphPFRAWLEAELgrrfdyvcvdspEELRRHPRaitragQVKGNGTrhekddrrrir 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 705 -------TAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkeqmvAVTEANEALKKqIEELQQEAR 777
Cdd:COG4913 600 sryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ-------RLAEYSWDEID-VASAEREIA 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 778 kAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAvgilsrrlqealaakeaaDAELGQLRAQGGssdsslALHERIQALE 857
Cdd:COG4913 672 -ELEAELERLDASSDDLAALEEQLEELEAELEEL------------------EEELDELKGEIG------RLEKELEQAE 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 858 AELQAVshsKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELE--------HEKGK 929
Cdd:COG4913 727 EELDEL---QDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELEramrafnrEWPAE 803
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530401913 930 LTGLGQSNAALRE----HNSILETALAKREADLVQLnlqvqavlqRKEEEDRQMKHLVQALQASLEKEKEKVNSL 1000
Cdd:COG4913 804 TADLDADLESLPEylalLDRLEEDGLPEYEERFKEL---------LNENSIEFVADLLSKLRRAIREIKERIDPL 869
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
680-1168 |
2.00e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 52.05 E-value: 2.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 680 ATRKRLDSELKELRQELMQVHGEKRTAEAELSR----LHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQM 755
Cdd:pfam05557 2 AELIESKARLSQLQNEKKQMELEHKRARIELEKkasaLKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 756 VAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYEnavgilsrRLQEALAAKEAADAELGQ 835
Cdd:pfam05557 82 KKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELE--------ELQERLDLLKAKASEAEQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 836 LRAQGGSSDSSLALHE-RIQALEAELQAVSHSKTLLEKELQEVIALTSQE------------LEESREKVLELEDELQes 902
Cdd:pfam05557 154 LRQNLEKQQSSLAEAEqRIKELEFEIQSQEQDSEIVKNSKSELARIPELEkelerlrehnkhLNENIENKLLLKEEVE-- 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 903 rGFRKKIKRLEESNKKLA---LELEHEKGKLTG---LGQSNA-------ALREHNSIL---ETALAKREADLVQLNLQVQ 966
Cdd:pfam05557 232 -DLKRKLEREEKYREEAAtleLEKEKLEQELQSwvkLAQDTGlnlrspeDLSRRIEQLqqrEIVLKEENSSLTSSARQLE 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 967 AVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEaghnrRHFKAASLElsEVKKELQAKEHLVQKLQaea 1046
Cdd:pfam05557 311 KARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKE-----RDGYRAILE--SYDKELTMSNYSPQLLE--- 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1047 ddlqiREGKHSQEIAQFQAELAEARAQLQllqkqldeqlskqpVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKE 1126
Cdd:pfam05557 381 -----RIEEAEDMTQKMQAHNEEMEAQLS--------------VAEEELGGYKQQAQTLERELQALRQQESLADPSYSKE 441
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 530401913 1127 -----------LEGLQQLLQNVKSELEMAQEDLSMtQKDKFMLQAKVSELKNN 1168
Cdd:pfam05557 442 evdslrrkletLELERQRLREQKNELEMELERRCL-QGDYDPKKTKVLHLSMN 493
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
214-1050 |
2.42e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.10 E-value: 2.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 214 EEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAA--------------LSTKLQAQVECSHSSQQRQDSLSSEV 279
Cdd:pfam01576 12 EELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAetelcaeaeemrarLAARKQELEEILHELESRLEEEEERS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 280 DTLKQSCWDLERAMTDLQNMLEAKNAslasSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQM---TALQSQL 356
Cdd:pfam01576 92 QQLQNEKKKMQQHIQDLEEQLDEEEA----ARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLeerISEFTSN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 357 QQVQLERTTLTSKLKASQ-AEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTE 435
Cdd:pfam01576 168 LAEEEEKAKSLSKLKNKHeAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 436 TQHRSMKEKGRIAAQLQGI---EADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAAS-------LEQ 505
Cdd:pfam01576 248 ALARLEEETAQKNNALKKIrelEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAqqelrskREQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 506 QLEQVKLTLLQR----DQQLEALQQEHL----DLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREdti 577
Cdd:pfam01576 328 EVTELKKALEEEtrshEAQLQEMRQKHTqaleELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSE--- 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 578 cllqNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFlqq 657
Cdd:pfam01576 405 ----HKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELL--- 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 658 kvmveayRRDATSKDQLISELKAtrkrLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKE 737
Cdd:pfam01576 478 -------QEETRQKLNLSTRLRQ----LEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEG 546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 738 RDEMETHLQSLqfdKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKmRRLGSDLTSAQKEMKtKHKAYENAVG--IL 815
Cdd:pfam01576 547 KKRLQRELEAL---TQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQ-RQLVSNLEKKQKKFD-QMLAEEKAISarYA 621
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 816 SRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQAVSHSKTLLEK---ELQEVIALTSQELEESREKV 892
Cdd:pfam01576 622 EERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKnvhELERSKRALEQQVEEMKTQL 701
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 893 LELEDELQESRGFRkkiKRLEESNKKLALELEHEKGKLTGLG-----QSNAALREHNSILE----------TALAKREAD 957
Cdd:pfam01576 702 EELEDELQATEDAK---LRLEVNMQALKAQFERDLQARDEQGeekrrQLVKQVRELEAELEderkqraqavAAKKKLELD 778
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 958 LVQLNLQVQAVLQRKEEEDRQMKHLvQALQASLEKEKEKVNSLKEQVAAAKVEaghNRRHFKAASLELSEVKKELQAKEH 1037
Cdd:pfam01576 779 LKELEAQIDAANKGREEAVKQLKKL-QAQMKDLQRELEEARASRDEILAQSKE---SEKKLKNLEAELLQLQEDLAASER 854
|
890
....*....|...
gi 530401913 1038 LVQKLQAEADDLQ 1050
Cdd:pfam01576 855 ARRQAQQERDELA 867
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
539-1114 |
2.50e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.21 E-value: 2.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 539 QEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRgarRLEEGTEETSET 618
Cdd:PRK01156 189 EEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNR---YESEIKTAESDL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 619 LEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFlqqkvmveAYRRDATSKDQLISELKATRKRLDSELKELrQELMQ 698
Cdd:PRK01156 266 SMELEKNNYYKELEERHMKIINDPVYKNRNYINDYF--------KYKNDIENKKQILSNIDAEINKYHAIIKKL-SVLQK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 699 VHGEKRTAEAELSRLHREVAQVRQHMADLEGHL---QSAQKERDEMETHLQSLQFDKEQMVAVTEAN-EALKKQIEELqq 774
Cdd:PRK01156 337 DYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLksiESLKKKIEEYSKNIERMSAFISEILKIQEIDpDAIKKELNEI-- 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 775 eaRKAITEQKQKMrrlgSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLalHERIQ 854
Cdd:PRK01156 415 --NVKLQDISSKV----SSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRL--EEKIR 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 855 ALEAELQAVSHSKTLLEKELQEviaLTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKlalelehekgkltglg 934
Cdd:PRK01156 487 EIEIEVKDIDEKIVDLKKRKEY---LESEEINKSINEYNKIESARADLEDIKIKINELKDKHDK---------------- 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 935 qSNAALREHNSI-LETALAKRE----ADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQaSLEKEKEKVNSLKEQVAAAKV 1009
Cdd:PRK01156 548 -YEEIKNRYKSLkLEDLDSKRTswlnALAVISLIDIETNRSRSNEIKKQLNDLESRLQ-EIEIGFPDDKSYIDKSIREIE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1010 EAGHNrrhfkaasleLSEVKKELQAKEHLVQKLQ----------AEADDLQIREGKHSQEIAQFQAELAEARAQLQLLQK 1079
Cdd:PRK01156 626 NEANN----------LNNKYNEIQENKILIEKLRgkidnykkqiAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKA 695
|
570 580 590
....*....|....*....|....*....|....*
gi 530401913 1080 QLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQ 1114
Cdd:PRK01156 696 NRARLESTIEILRTRINELSDRINDINETLESMKK 730
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
319-986 |
2.55e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 2.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 319 EQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEAR 398
Cdd:TIGR00618 176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 399 VRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQltetqhrsmKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEED 478
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEETQERINRA---------RKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 479 LQRRLE------EFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQ--EALQSREQSLD 550
Cdd:TIGR00618 327 LMKRAAhvkqqsSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQklQSLCKELDILQ 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 551 ALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAA----LQAAKSGKEELDRGARRLEEGTEETSETLEKLREEL 626
Cdd:TIGR00618 407 REQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAitctAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQET 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 627 AIKS--GQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKR 704
Cdd:TIGR00618 487 RKKAvvLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQ 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 705 TAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkeqmvavtEANEALKKQIEELQQEARKAITEQk 784
Cdd:TIGR00618 567 EIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA----------CEQHALLRKLQPEQDLQDVRLHLQ- 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 785 QKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSlALHERIQALEAELQAVS 864
Cdd:TIGR00618 636 QCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE-MLAQCQTLLRELETHIE 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 865 HSKTLLEkELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKG-KLTGLGQSNAALREH 943
Cdd:TIGR00618 715 EYDREFN-EIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGaELSHLAAEIQFFNRL 793
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 530401913 944 NSILETALAKREA--------DLVQLNLQVQAVLQRKEEEDRQMKHLVQAL 986
Cdd:TIGR00618 794 REEDTHLLKTLEAeigqeipsDEDILNLQCETLVQEEEQFLSRLEEKSATL 844
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
480-800 |
3.08e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 3.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 480 QRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQ----------------EHLDLMKQLTLTQEALQ 543
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEyswdeidvasaereiaELEAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 544 SREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLR 623
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 624 EELaikSGQVEHLQQETAALKKQMQKIKEQFLQQkvmveaYRRDATSKDQLISELKATRKRLD----SELKELRQELMQV 699
Cdd:COG4913 769 ENL---EERIDALRARLNRAEEELERAMRAFNRE------WPAETADLDADLESLPEYLALLDrleeDGLPEYEERFKEL 839
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 700 hgEKRTAEAEL----SRLHREVAQVRQHMADLEGHLQSAQKERDemeTHLQsLQFDKEQMVAVTEANEALKKQIEELQQE 775
Cdd:COG4913 840 --LNENSIEFVadllSKLRRAIREIKERIDPLNDSLKRIPFGPG---RYLR-LEARPRPDPEVREFRQELRAVTSGASLF 913
|
330 340
....*....|....*....|....*
gi 530401913 776 ARKAITEQKQKMRRLGSDLTSAQKE 800
Cdd:COG4913 914 DEELSEARFAALKRLIERLRSEEEE 938
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
209-1071 |
3.65e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.59 E-value: 3.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 209 AAETQEEMLQVLKEKMRlEGQLEAlsleasQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSlssEVDTLKQSCWD 288
Cdd:TIGR00606 187 ALETLRQVRQTQGQKVQ-EHQMEL------KYLKQYKEKACEIRDQITSKEAQLESSREIVKSYEN---ELDPLKNRLKE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 289 LERAMTDLQNmLEAKNASLASSNNDLQVAEEQYQRLMAKV-----EDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLER 363
Cdd:TIGR00606 257 IEHNLSKIMK-LDNEIKALKSRKKQMEKDNSELELKMEKVfqgtdEQLNDLYHNHQRTVREKERELVDCQRELEKLNKER 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 364 TTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMahiqvgqmtQAGLLEHLKLENVSLSQQLTETQHRSMKE 443
Cdd:TIGR00606 336 RLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRL---------ELDGFERGPFSERQIKNFHTLVIERQEDE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 444 KGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAasleQQLEQVKLTLLQRDQQLEA 523
Cdd:TIGR00606 407 AKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKEL----QQLEGSSDRILELDQELRK 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 524 LQQEhLDLMKQLTLTqEALQSREQSLDALQTHYDE----LQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKE 599
Cdd:TIGR00606 483 AERE-LSKAEKNSLT-ETLKKEVKSLQNEKADLDRklrkLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSD 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 600 ELDRGA------RRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQqkvmVEAYRRDATSKDQ 673
Cdd:TIGR00606 561 ELTSLLgyfpnkKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSS----YEDKLFDVCGSQD 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 674 LISELKATRKRLDSELKEL----------RQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMET 743
Cdd:TIGR00606 637 EESDLERLKEEIEKSSKQRamlagatavySQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTES 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 744 HLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRR--LQE 821
Cdd:TIGR00606 717 ELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVtiMER 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 822 ALAAKEAADAELGQLRAQGGSSDSSLA---LHERIQALEAELQAVSHSKTLLEK---ELQEVIALTSQELEESREKVLEL 895
Cdd:TIGR00606 797 FQMELKDVERKIAQQAAKLQGSDLDRTvqqVNQEKQEKQHELDTVVSKIELNRKliqDQQEQIQHLKSKTNELKSEKLQI 876
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 896 EDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNsilETALAKREADLVQLNLQVQAVLQRKEEE 975
Cdd:TIGR00606 877 GTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK---EELISSKETSNKKAQDKVNDIKEKVKNI 953
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 976 DRQMKHLVQALQASLEKE-KEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREG 1054
Cdd:TIGR00606 954 HGYMKDIENKIQDGKDDYlKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEV 1033
|
890
....*....|....*..
gi 530401913 1055 KhsQEIAQFQAELAEAR 1071
Cdd:TIGR00606 1034 E--EELKQHLKEMGQMQ 1048
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
584-1170 |
4.60e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 4.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 584 KIILEAAlqaakSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKE----------- 652
Cdd:pfam02463 156 LEIEEEA-----AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLeleeeyllyld 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 653 ---------QFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQ- 722
Cdd:pfam02463 231 ylklneeriDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKv 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 723 --------HMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDL 794
Cdd:pfam02463 311 ddeeklkeSEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 795 TSAQKEMKTKHKAyENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQAVSHSKTLLEKEL 874
Cdd:pfam02463 391 KLKEEELELKSEE-EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 875 QEVIALTSQELEESREKVLELEDELQESRGFRKKIKRlEESNKKLALELEHEKGKLTGLGQSNAALreHNSILETALAKR 954
Cdd:pfam02463 470 SEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKAR-SGLKVLLALIKDGVGGRIISAHGRLGDL--GVAVENYKVAIS 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 955 EADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVN---SLKEQVAAAKVEAGHNRRHFKAASLELSEVKKE 1031
Cdd:pfam02463 547 TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPlksIAVLEIDPILNLAQLDKATLEADEDDKRAKVVE 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1032 LQAKEHLVQKLQAEADDLQIREGKHSQ---------EIAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEV 1102
Cdd:pfam02463 627 GILKDTELTKLKESAKAKESGLRKGVSleeglaeksEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQ 706
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530401913 1103 DQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMK 1170
Cdd:pfam02463 707 REKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK 774
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
442-922 |
5.13e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 5.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 442 KEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEdLQRRLEEFEGERERLQRmadsAASLEQQLEQVKLTLlqRDQQL 521
Cdd:PRK03918 314 KRLSRLEEEINGIEERIKELEEKEERLEELKKKLKE-LEKRLEELEERHELYEE----AKAKKEELERLKKRL--TGLTP 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 522 EALQQEHLDLMKQLTLTQEALqsreqsldalqthyDELQARLGELQGEAASREDTIcllqnekIILEAALQAAKSGKEEL 601
Cdd:PRK03918 387 EKLEKELEELEKAKEEIEEEI--------------SKITARIGELKKEIKELKKAI-------EELKKAKGKCPVCGREL 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 602 DRGARrlEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKAT 681
Cdd:PRK03918 446 TEEHR--KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 682 RKrldsELKELRQELMQVHGEKRTAEAELSRLhrevAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVA--VT 759
Cdd:PRK03918 524 AE----EYEKLKEKLIKLKGEIKSLKKELEKL----EELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEerLK 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 760 EANEALKKQIEELQQEARKAITEQKQKmrRLGSDLTSAQKEMKTKHKAYENavgiLSRRLQEALAAKEAADAElgqlraq 839
Cdd:PRK03918 596 ELEPFYNEYLELKDAEKELEREEKELK--KLEEELDKAFEELAETEKRLEE----LRKELEELEKKYSEEEYE------- 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 840 gGSSDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIAlTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKL 919
Cdd:PRK03918 663 -ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE-ELEEREKAKKELEKLEKALERVEELREKVKKYKALLKER 740
|
...
gi 530401913 920 ALE 922
Cdd:PRK03918 741 ALS 743
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
623-1147 |
7.49e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 7.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 623 REELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRD-ATSKDQLISELKAtrkrldsELKELRQELMQVHG 701
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQiRGNGGDRLEQLER-------EIERLERELEERER 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 702 EKRTAEAELSRLH-----------REVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIE 770
Cdd:COG4913 360 RRARLEALLAALGlplpasaeefaALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 771 ELQQEARKAITEQkqkmrrLGSDLTSAQ-----KEMKTKHKAYENAV----GILSRRL----QEALAAKEAADAELGQLR 837
Cdd:COG4913 440 ARLLALRDALAEA------LGLDEAELPfvgelIEVRPEEERWRGAIervlGGFALTLlvppEHYAAALRWVNRLHLRGR 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 838 AQGgssdsslalhERIQALEAELQAVS-HSKTLLEK---ELQEVIALTSQELEESREKVL-ELEDELQESR------GFR 906
Cdd:COG4913 514 LVY----------ERVRTGLPDPERPRlDPDSLAGKldfKPHPFRAWLEAELGRRFDYVCvDSPEELRRHPraitraGQV 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 907 KKIKRLEESNKKLALELEHEkgkltgLGQSNAALREHnsiLETALAKREADLVQLNLQVQAvLQRKEEEDRQMKHLVQAL 986
Cdd:COG4913 584 KGNGTRHEKDDRRRIRSRYV------LGFDNRAKLAA---LEAELAELEEELAEAEERLEA-LEAELDALQERREALQRL 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 987 QASLEKEKEkVNSLKEQVAAAKVEaghnRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAE 1066
Cdd:COG4913 654 AEYSWDEID-VASAEREIAELEAE----LERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE 728
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1067 LAEARAQLQLLQKQLDEQLskqpvgNQEMENLKWEVDQKEREiQSLKQQLdlteqqgRKELEGLQQLLQNVKSELEMAQE 1146
Cdd:COG4913 729 LDELQDRLEAAEDLARLEL------RALLEERFAAALGDAVE-RELRENL-------EERIDALRARLNRAEEELERAMR 794
|
.
gi 530401913 1147 D 1147
Cdd:COG4913 795 A 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
845-1072 |
9.29e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 9.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 845 SSLALHERIQALEAELQAVSHSKTLLEKELQEV---IALTSQELEESREKVLELEDELQESRG----FRKKIKRLEESNK 917
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALkkeEKALLKQLAALERRIAALARRIRALEQelaaLEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 918 KLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKV 997
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530401913 998 NSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQiregkhsQEIAQFQAELAEARA 1072
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE-------ALIARLEAEAAAAAE 241
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
661-1235 |
9.40e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 9.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 661 VEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTA-EAELSRLHREVAQVRQHMADLEGHLQSAQKERD 739
Cdd:PTZ00121 1226 AEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAiKAEEARKADELKKAEEKKKADEAKKAEEKKKAD 1305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 740 EMETHLQSLQFDKEQMVAVTEAN---EALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILS 816
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEEAKkkaDAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 817 RRLQEALAAKEAADAELGQLRAQggssDSSLALHERIQALEAELQA--VSHSKTLLEKELQEVIALTSQELEESREKVLE 894
Cdd:PTZ00121 1386 KAEEKKKADEAKKKAEEDKKKAD----ELKKAAAAKKKADEAKKKAeeKKKADEAKKKAEEAKKADEAKKKAEEAKKAEE 1461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 895 LEDELQESRGFRKKIKRLEESNKKLALELEHEKGKltglgqsnaalREHNSILETALAKREAD-LVQLNLQVQAVLQRKE 973
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK-----------KKADEAKKAAEAKKKADeAKKAEEAKKADEAKKA 1530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 974 EEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQ-AKEHLVQKLQAEADDLQIR 1052
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEeARIEEVMKLYEEEKKMKAE 1610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1053 EGKHSQE----IAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENL--KWEVDQKEREIQSLKQQLDLTEQQGRKE 1126
Cdd:PTZ00121 1611 EAKKAEEakikAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKikAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1127 LEGLQQLLQNVKSELEMAQEDLSMTQKDKfmlQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKTRKEPKGEASSSNPATP 1206
Cdd:PTZ00121 1691 AEALKKEAEEAKKAEELKKKEAEEKKKAE---ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEE 1767
|
570 580
....*....|....*....|....*....
gi 530401913 1207 IKipdcpvpaslLEELLRPPPAVSKEPLK 1235
Cdd:PTZ00121 1768 KK----------AEEIRKEKEAVIEEELD 1786
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
206-584 |
1.16e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 206 ESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTK---LQAQVECSHSSQQRQDSLSSEVDTL 282
Cdd:COG4717 96 ELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERleeLEERLEELRELEEELEELEAELAEL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 283 KQscwDLERAMTDLQNMLEaknaslassnNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLE 362
Cdd:COG4717 176 QE---ELEELLEQLSLATE----------EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 363 RT--------------------------TLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQA 416
Cdd:COG4717 243 ERlkearlllliaaallallglggsllsLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 417 GLLEHLKLENvSLSQQLTETQHRSMKEKGRIAAQLQGIEADmLDQEAAFMQIQE----AKTMVEEDLQRRLEEFEGERER 492
Cdd:COG4717 323 ELLAALGLPP-DLSPEELLELLDRIEELQELLREAEELEEE-LQLEELEQEIAAllaeAGVEDEEELRAALEQAEEYQEL 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 493 LQRMADSAASLEQQL------------EQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQ--SREQSLDALQTHYDE 558
Cdd:COG4717 401 KEELEELEEQLEELLgeleellealdeEELEEELEELEEELEELEEELEELREELAELEAELEqlEEDGELAELLQELEE 480
|
410 420
....*....|....*....|....*.
gi 530401913 559 LQARLGELQGEAASREDTICLLQNEK 584
Cdd:COG4717 481 LKAELRELAEEWAALKLALELLEEAR 506
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
369-916 |
1.18e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 369 KLKASQAEISSLQSVRQWY--QQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQHRsmkEKGR 446
Cdd:COG4913 266 AARERLAELEYLRAALRLWfaQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD---RLEQ 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 447 IAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQvklTLLQRDQQLEALQQ 526
Cdd:COG4913 343 LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE---ALAEAEAALRDLRR 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 527 EHLDLMKQLtltqEALQSREQSLDAlqtHYDELQARLGELQGEAASREDTIC-LLQ----NEK----------------I 585
Cdd:COG4913 420 ELRELEAEI----ASLERRKSNIPA---RLLALRDALAEALGLDEAELPFVGeLIEvrpeEERwrgaiervlggfaltlL 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 586 ILEAALQAAKS------GKEELD-RGARRLEEGTEETSETLEKLREELAIKSGQ--------------------VEHLQQ 638
Cdd:COG4913 493 VPPEHYAAALRwvnrlhLRGRLVyERVRTGLPDPERPRLDPDSLAGKLDFKPHPfrawleaelgrrfdyvcvdsPEELRR 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 639 ETAALKKQMQkIKeqflQQKVMVEAYRRDATSKDQLI-SELKATRKRLDSELKELRQELmqvhgekRTAEAELSRLHREV 717
Cdd:COG4913 573 HPRAITRAGQ-VK----GNGTRHEKDDRRRIRSRYVLgFDNRAKLAALEAELAELEEEL-------AEAEERLEALEAEL 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 718 AQVRQHMADLEGHLQSAQKERD--EMETHLQSLQfdkEQMVAVTEAN---EALKKQIEELQQE---ARKAITEQKQKMRR 789
Cdd:COG4913 641 DALQERREALQRLAEYSWDEIDvaSAEREIAELE---AELERLDASSddlAALEEQLEELEAEleeLEEELDELKGEIGR 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 790 LGSDLTSAQKEMKTKHKAYENAVGIlsrrlqEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAElqavshsktl 869
Cdd:COG4913 718 LEKELEQAEEELDELQDRLEAAEDL------ARLELRALLEERFAAALGDAVERELRENLEERIDALRAR---------- 781
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 530401913 870 LEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESN 916
Cdd:COG4913 782 LNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDG 828
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
672-819 |
1.26e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.00 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 672 DQLISELKATRKRLDSELKELRQE-------LMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERD----- 739
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELEDElaalearLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyealq 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 740 -EMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRR 818
Cdd:COG1579 96 kEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPE 175
|
.
gi 530401913 819 L 819
Cdd:COG1579 176 L 176
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
407-567 |
1.46e-05 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 48.89 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 407 HIQVGQMTQAG-LLehLKLENVSLSQQLTETQHRsmkekgriAAQLQGIEADMLDQEAAFMQIQEAKTMVEEdLQRRLEE 485
Cdd:COG1566 60 LVKEGDRVKKGqVL--ARLDPTDLQAALAQAEAQ--------LAAAEAQLARLEAELGAEAEIAAAEAQLAA-AQAQLDL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 486 FEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEhLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGE 565
Cdd:COG1566 129 AQRELERYQALYKKGAVSQQELDEARAALDAAQAQLEAAQAQ-LAQAQAGLREEEELAAAQAQVAQAEAALAQAELNLAR 207
|
..
gi 530401913 566 LQ 567
Cdd:COG1566 208 TT 209
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
209-839 |
1.49e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.58 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 209 AAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALStKLQAQVEcshsSQQRQDSLSSEVDTLKQSCWD 288
Cdd:TIGR00618 234 ALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLE-ETQERIN----RARKAAPLAAHIKAVTQIEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 289 LERAMTDLQNM------LEAKNASLASSNNDLQVAEEQYQRLMAKvEDMQRSMLSKDNTVHDLRQQMTALQSQLQQVQLE 362
Cdd:TIGR00618 309 AQRIHTELQSKmrsrakLLMKRAAHVKQQSSIEEQRRLLQTLHSQ-EIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 363 RTTLTSKLKASQAEISSLQSVRqwyQQQLALAQEARVrLQGEMAHIQVGQMTQAGLLEHLKL--ENVSLSQQLTETQHRS 440
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREQ---ATIDTRTSAFRD-LQGQLAHAKKQQELQQRYAELCAAaiTCTAQCEKLEKIHLQE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 441 MKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQ 520
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETS 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 521 LEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEE 600
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQP 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 601 ldrgARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETaaLKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKA 680
Cdd:TIGR00618 624 ----EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQER--VREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 681 TRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQvrqhmaDLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTE 760
Cdd:TIGR00618 698 MLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAA------REDALNQSLKELMHQARTVLKARTEAHFNNNEEVT 771
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530401913 761 ANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQ 839
Cdd:TIGR00618 772 AALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQ 850
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
174-750 |
1.60e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 174 LQAAAAEHQDQGQEVNGEVRSRRDSICSSVSlESSAAETQEemLQVLKEKM-RLEGQLEALSLEASQALKEKAE------ 246
Cdd:pfam12128 270 DETLIASRQEERQETSAELNQLLRTLDDQWK-EKRDELNGE--LSAADAAVaKDRSELEALEDQHGAFLDADIEtaaadq 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 247 -----LQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDtlKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQY 321
Cdd:pfam12128 347 eqlpsWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK--EQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESEL 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 322 ------QRLMAKVEDMQ--------RSMLSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWY 387
Cdd:pfam12128 425 reqleaGKLEFNEEEYRlksrlgelKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQA 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 388 QQQLALAQEARVRLQGEMAHIQVGQMTQAG-LLEHLKLENVSLSQQL-----TETQHRSMKEKGRIAAQLQG---IEADM 458
Cdd:pfam12128 505 SEALRQASRRLEERQSALDELELQLFPQAGtLLHFLRKEAPDWEQSIgkvisPELLHRTDLDPEVWDGSVGGelnLYGVK 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 459 LDQEAafMQIQEAKTMvEEDLQRRLEEFEgerERLQRMADSAASLEQQLEQVKLTLLQRDQQLE----ALQQEHLDLM-- 532
Cdd:pfam12128 585 LDLKR--IDVPEWAAS-EEELRERLDKAE---EALQSAREKQAAAEEQLVQANGELEKASREETfartALKNARLDLRrl 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 533 ------------KQLTLTQEALQSREQSLDALQTHYD-ELQARLGELQGEaaSREDTICLLQNEKII---LEAALQAAKS 596
Cdd:pfam12128 659 fdekqsekdkknKALAERKDSANERLNSLEAQLKQLDkKHQAWLEEQKEQ--KREARTEKQAYWQVVegaLDAQLALLKA 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 597 GKEELDRGARRLEEGTEETSETLEKLR----EELAIKSGQVEHLQQETAALKKQMQKIKE--QFLQQKVMVEAYRRDATS 670
Cdd:pfam12128 737 AIAARRSGAKAELKALETWYKRDLASLgvdpDVIAKLKREIRTLERKIERIAVRRQEVLRyfDWYQETWLQRRPRLATQL 816
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 671 KD--QLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSL 748
Cdd:pfam12128 817 SNieRAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQLE 896
|
..
gi 530401913 749 QF 750
Cdd:pfam12128 897 DL 898
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
200-416 |
1.77e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 200 CSSVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEV 279
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 280 DTLKQscwDLERAMTDLQNMLEA--------------KNASLASSNNDLQVAEEQYQRLMAKVEDMQRSMLSKDNTVHDL 345
Cdd:COG4942 93 AELRA---ELEAQKEELAELLRAlyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530401913 346 RQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQA 416
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
643-1171 |
1.98e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 643 LKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQ 722
Cdd:TIGR04523 38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 723 HMADLEGHLQSAQKERDEMETH----LQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKmrrlgsdltsaQ 798
Cdd:TIGR04523 118 QKNKLEVELNKLEKQKKENKKNidkfLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNI-----------Q 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 799 KEMKTKHKAYenavgilsRRLQEALAAKEAADAELGQLRAQggssdsslalherIQALEAELQAVSHSKTLLEKELQEVi 878
Cdd:TIGR04523 187 KNIDKIKNKL--------LKLELLLSNLKKKIQKNKSLESQ-------------ISELKKQNNQLKDNIEKKQQEINEK- 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 879 altSQELEESREKVLELEDELQE-SRGFRKKIKRLEESNKKLAlelehekgkltglgQSNAALREHNSILETALAKREAD 957
Cdd:TIGR04523 245 ---TTEISNTQTQLNQLKDEQNKiKKQLSEKQKELEQNNKKIK--------------ELEKQLNQLKSEISDLNNQKEQD 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 958 LvqlNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEH 1037
Cdd:TIGR04523 308 W---NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQ 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1038 LVQKLQAEADDLQIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLD 1117
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRE 464
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 530401913 1118 LTEQQgrkeLEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMKT 1171
Cdd:TIGR04523 465 SLETQ----LKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKD 514
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
351-596 |
2.18e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 351 ALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLS 430
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 431 QQLTEtqhrsmkEKGRIAAQLQGIEADMLDQEAAFMQIQEAKtmveEDLQRRLEEFEGERERLQRMADSAASLEQQLEQV 510
Cdd:COG4942 97 AELEA-------QKEELAELLRALYRLGRQPPLALLLSPEDF----LDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 511 KLTLLQRDQQLEALQQEHLDLMKQLtltQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTIcllqnEKIILEAA 590
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAAL---EALKAERQKLLARLEKELAELAAELAELQQEAEELEALI-----ARLEAEAA 237
|
....*.
gi 530401913 591 LQAAKS 596
Cdd:COG4942 238 AAAERT 243
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
947-1258 |
4.01e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 4.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 947 LETALAKREADLVQLNLQVQAVLQRKE--EEDRQMKHLVQALQaslekekekVNSLKEQVAAAKVEAGHNRRHFKAASLE 1024
Cdd:TIGR02168 191 LEDILNELERQLKSLERQAEKAERYKElkAELRELELALLVLR---------LEELREELEELQEELKEAEEELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1025 LSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELA---EARAQLQLLQKQLDEQLSKQPvgnQEMENLKWE 1101
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQilrERLANLERQLEELEAQLEELE---SKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1102 VDQKEREIQSLKQQLDLTEQQG---RKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNmKTLLQQNQQ 1178
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELeelEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR-LERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1179 LKLDLRRGAAKTRKEPKGEASSSNPATPIKIPD----CPVPASLLEELLRPPPAVSKEPLKNLNSCLQQLKQEMDSLQRQ 1254
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEelqeELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
....
gi 530401913 1255 MEEH 1258
Cdd:TIGR02168 498 QENL 501
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
425-767 |
4.15e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 4.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 425 ENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEaafmqiqeaKTMVEEDLQRRLEEFEGERERLQRMADSAASLE 504
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQE---------KEEKAREVERRRKLEEAEKARQAEMDRQAAIYA 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 505 QQleqvKLTLLQRDQQLEALQQE----HLDLMKQLTLTQEALQSREqsLDALQTHYDELQARLgeLQGEAASREDTICLL 580
Cdd:pfam17380 338 EQ----ERMAMERERELERIRQEerkrELERIRQEEIAMEISRMRE--LERLQMERQQKNERV--RQELEAARKVKILEE 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 581 QNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALK-KQMQKIKEQflQQKV 659
Cdd:pfam17380 410 ERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKrKKLELEKEK--RDRK 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 660 MVEAYRRDATSKD-----QLISELKATRKRLDSELKElRQELMQVHGEKRTAEAElSRLHREVAQVRQhmadleghLQSA 734
Cdd:pfam17380 488 RAEEQRRKILEKEleerkQAMIEEERKRKLLEKEMEE-RQKAIYEEERRREAEEE-RRKQQEMEERRR--------IQEQ 557
|
330 340 350
....*....|....*....|....*....|...
gi 530401913 735 QKERDEMETHLQSLQFDKEQMVAVTEANEALKK 767
Cdd:pfam17380 558 MRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
648-801 |
7.08e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.08 E-value: 7.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 648 QKIKEQFLQQKVMVEAYRRDA-TSKDQLISELKatrkrldSELKELRQELmqvHGEKRTAEAELSRLHRevaQVRQHMAD 726
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKEAeAIKKEALLEAK-------EEIHKLRNEF---EKELRERRNELQKLEK---RLLQKEEN 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530401913 727 LEGHLQSAQKERDEMETHLQSLqfdkeqmvavteanEALKKQIEELQQEARKAITEQKQKMRRLgSDLTSAQ-KEM 801
Cdd:PRK12704 98 LDRKLELLEKREEELEKKEKEL--------------EQKQQELEKKEEELEELIEEQLQELERI-SGLTAEEaKEI 158
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
476-1139 |
7.35e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 7.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 476 EEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQrDQQLEALQQEHLDLmkqltlTQEALQSREQSLDA-LQT 554
Cdd:pfam12128 229 DIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKS-DETLIASRQEERQE------TSAELNQLLRTLDDqWKE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 555 HYDELQARLGELQGEAASREDTICLLQNE-KIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKL----REELAIK 629
Cdd:pfam12128 302 KRDELNGELSAADAAVAKDRSELEALEDQhGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHqdvtAKYNRRR 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 630 SGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSK-----DQLISELKATRKRLDSELKELRQELMQVHGE-- 702
Cdd:pfam12128 382 SKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESElreqlEAGKLEFNEEEYRLKSRLGELKLRLNQATATpe 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 703 ----KRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSL-QFDKEQMVAVTEANEALKKQIEELQQEAR 777
Cdd:pfam12128 462 lllqLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQAsRRLEERQSALDELELQLFPQAGTLLHFLR 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 778 KAITEQKQKMRRLGSDL----TSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAElgQLRAQGGSSDSSL-ALHER 852
Cdd:pfam12128 542 KEAPDWEQSIGKVISPEllhrTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEE--ELRERLDKAEEALqSAREK 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 853 IQALEAELQAVShsKTLLEKELQEVIALTSqeLEESREKVLELEDELQ-ESRGFRKKIKRLEESNKKLALELEHEKgKLT 931
Cdd:pfam12128 620 QAAAEEQLVQAN--GELEKASREETFARTA--LKNARLDLRRLFDEKQsEKDKKNKALAERKDSANERLNSLEAQL-KQL 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 932 GLGQSNAALREHNSILETALAKREADLV-------QLNLQVQAVLQRKEEEDRQMKHLVQALQASLEK---EKEKVNSLK 1001
Cdd:pfam12128 695 DKKHQAWLEEQKEQKREARTEKQAYWQVvegaldaQLALLKAAIAARRSGAKAELKALETWYKRDLASlgvDPDVIAKLK 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1002 EQVAA--AKVEAGHNRRHfKAASLELSEVKKELQAKEHL---VQKLQAEADDLQIREGKHSQEIAQFQAELAEARAQLQL 1076
Cdd:pfam12128 775 REIRTleRKIERIAVRRQ-EVLRYFDWYQETWLQRRPRLatqLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEK 853
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530401913 1077 LQKQLDEQLSKQPVGNQEMENLK--WEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKS 1139
Cdd:pfam12128 854 QQVRLSENLRGLRCEMSKLATLKedANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKN 918
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
477-779 |
7.46e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 7.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 477 EDLQRRLEEFEGERERLQRMADSAASLEQQLEQ--------VKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQS 548
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEElleqlslaTEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 549 LDALQTHYDELQ---------------ARLGELQGEAASREDTIC------------------LLQNEKIILEAALQAAK 595
Cdd:COG4717 229 LEQLENELEAAAleerlkearlllliaAALLALLGLGGSLLSLILtiagvlflvlgllallflLLAREKASLGKEAEELQ 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 596 SGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLI 675
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELR 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 676 SELKATRKR--LDSELKELRQELMQVHGEKRT--AEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFD 751
Cdd:COG4717 389 AALEQAEEYqeLKEELEELEEQLEELLGELEEllEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
330 340
....*....|....*....|....*...
gi 530401913 752 KEQMVAVTEAnEALKKQIEELQQEARKA 779
Cdd:COG4717 469 GELAELLQEL-EELKAELRELAEEWAAL 495
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
881-1166 |
8.05e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 8.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 881 TSQELEESREKVLELEDELQEsrgFRKKIKRLE------ESNKKLALELEHEKGKLTGLG--QSNAALREHNSILETALA 952
Cdd:COG1196 177 AERKLEATEENLERLEDILGE---LERQLEPLErqaekaERYRELKEELKELEAELLLLKlrELEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 953 KREADLVQLNlQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKEL 1032
Cdd:COG1196 254 ELEELEAELA-ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1033 QAKEHLVQKLQAEADDLQIREgkhsQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSL 1112
Cdd:COG1196 333 EELEEELEELEEELEEAEEEL----EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 530401913 1113 KQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELK 1166
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
632-809 |
8.47e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 8.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 632 QVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELS 711
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 712 RLHREVAQV--------RQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQM---VAVTEANEALKKQIEELQQEARKAI 780
Cdd:COG4942 101 AQKEELAELlralyrlgRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAeelRADLAELAALRAELEAERAELEALL 180
|
170 180
....*....|....*....|....*....
gi 530401913 781 TEQKQKMRRLGSDLTSAQKEMKTKHKAYE 809
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELA 209
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
477-987 |
1.32e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.35 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 477 EDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHY 556
Cdd:pfam10174 268 EDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 557 DELQARLGELQGEAASREDTICLLQNEKIILEAALQAAksgKEELDRGARRLEEGTEETSETLEKLRE---ELAIKSGQV 633
Cdd:pfam10174 348 DALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDL---KDMLDVKERKINVLQKKIENLQEQLRDkdkQLAGLKERV 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 634 EHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRldsELKELRQELMQVHGEKRTAEAELSRL 713
Cdd:pfam10174 425 KSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKK---ENKDLKEKVSALQPELTEKESSLIDL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 714 HREVAQVRQHMADLEGHLQS---AQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEA---RKAITEQKQKM 787
Cdd:pfam10174 502 KEHASSLASSGLKKDSKLKSleiAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVaryKEESGKAQAEV 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 788 RRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSslalheriQALEAELQAVSHSK 867
Cdd:pfam10174 582 ERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLE--------EARRREDNLADNSQ 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 868 TLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKrlEESNKKLALELEHEKGKLTglgqsnAALREHNS-- 945
Cdd:pfam10174 654 QLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLR--AERRKQLEEILEMKQEALL------AAISEKDAni 725
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 530401913 946 -ILETALAKREADlvqlnlqVQAVLQRKEEEDRQMKHLVQALQ 987
Cdd:pfam10174 726 aLLELSSSKKKKT-------QEEVMALKREKDRLVHQLKQQTQ 761
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
225-405 |
1.67e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 225 RLEGQLEALSLEASQALKEKAELQAQLAALSTKLQAqvecshsSQQRQDSLSSEVDTlkqscWDLERAMTDLQNMLEAkn 304
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREA-------LQRLAEYSWDEIDV-----ASAEREIAELEAELER-- 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 305 asLASSNNDLQVAEEQ-------YQRLMAKVEDMQRSMLSKDNTVHDLRQ-----QMTALQSQLQQVQLERTTLTSKLKA 372
Cdd:COG4913 680 --LDASSDDLAALEEQleeleaeLEELEEELDELKGEIGRLEKELEQAEEeldelQDRLEAAEDLARLELRALLEERFAA 757
|
170 180 190
....*....|....*....|....*....|...
gi 530401913 373 SQAEiSSLQSVRQWYQQQLALAQEARVRLQGEM 405
Cdd:COG4913 758 ALGD-AVERELRENLEERIDALRARLNRAEEEL 789
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
519-941 |
2.15e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 519 QQLEALQQEhldlMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDticllqneKIILEAALQAAKSGK 598
Cdd:COG4717 71 KELKELEEE----LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK--------LLQLLPLYQELEALE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 599 EELDRGARRLEEGTEETSETLEkLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVM-VEAYRRDATSKDQLISE 677
Cdd:COG4717 139 AELAELPERLEELEERLEELRE-LEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEeLEELQQRLAELEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 678 LKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLhreVAQVRQHMADLEGHLQSAQKERDEMET------HLQSLQFD 751
Cdd:COG4717 218 AQEELEELEEELEQLENELEAAALEERLKEARLLLL---IAAALLALLGLGGSLLSLILTIAGVLFlvlgllALLFLLLA 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 752 KEQMVAVTEANEA-LKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAAd 830
Cdd:COG4717 295 REKASLGKEAEELqALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA- 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 831 aelgQLRAQGGSSD-----SSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTS-----QELEESREKVLELEDEL- 899
Cdd:COG4717 374 ----ALLAEAGVEDeeelrAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeeleEELEELEEELEELEEELe 449
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 530401913 900 ---QESRGFRKKIKRLEESNK--KLALELEHEKGKLTGLGQSNAALR 941
Cdd:COG4717 450 elrEELAELEAELEQLEEDGElaELLQELEELKAELRELAEEWAALK 496
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
852-1069 |
2.20e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.39 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 852 RIQALEAELQAVSHSKTLLE-------KELQEVIALTSQELEESREKVlelEDELQESRGFRKKIKRLEESNKKLALELE 924
Cdd:PHA02562 175 KIRELNQQIQTLDMKIDHIQqqiktynKNIEEQRKKNGENIARKQNKY---DELVEEAKTIKAEIEELTDELLNLVMDIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 925 HEKGKLTGLGQSNAALREhnsilETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHL---VQALQASLEKEKEKVNSLK 1001
Cdd:PHA02562 252 DPSAALNKLNTAAAKIKS-----KIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIkdkLKELQHSLEKLDTAIDELE 326
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530401913 1002 EQVaaakVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAE 1069
Cdd:PHA02562 327 EIM----DEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDK 390
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
420-1010 |
2.22e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 420 EHLKLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEDLQRRLEEFEG---ERERLQRM 496
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKkaeEAKKADEA 1320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 497 ADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDT 576
Cdd:PTZ00121 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA 1400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 577 ICLLQNEKIILEAAlqAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKsgQVEHLQQETAALKKQMQKIKEQFLQ 656
Cdd:PTZ00121 1401 EEDKKKADELKKAA--AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK--KAEEAKKAEEAKKKAEEAKKADEAK 1476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 657 QKVMvEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHgEKRTAE----AELSRLHREVAQVRQHMADLEGHLQ 732
Cdd:PTZ00121 1477 KKAE-EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE-EAKKADeakkAEEAKKADEAKKAEEKKKADELKKA 1554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 733 SAQKERDEMETHLQSLQFDKEQMVAVTEANEAlkKQIEELQQEARKAITEQKQKMR----------RLGSDLTSAQKEMK 802
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEA--KKAEEARIEEVMKLYEEEKKMKaeeakkaeeaKIKAEELKKAEEEK 1632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 803 TKHKAYENAVGILSRRLQEALAAKEAADAELGQLrAQGGSSDSSLAlhERIQALEAELQAVSHSKTLLEKELQEVIALTS 882
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE-AKKAEEDKKKA--EEAKKAEEDEKKAAEALKKEAEEAKKAEELKK 1709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 883 QELEESReKVLELEDELQESRGFRKKIKRLEESNKKLALEL---EHEKGKLTGLGQSNAALREHNSILETALAKREADlv 959
Cdd:PTZ00121 1710 KEAEEKK-KAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAkkdEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD-- 1786
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 530401913 960 qlnlqvQAVLQRKEEEDRQMKHLVQALQASLEKEKEK---VNSLKEQVAAAKVE 1010
Cdd:PTZ00121 1787 ------EEDEKRRMEVDKKIKDIFDNFANIIEGGKEGnlvINDSKEMEDSAIKE 1834
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
662-839 |
2.24e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 662 EAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEM 741
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 742 ETHLQSL-----------QFDKEQMV----AVTEANEALKKQIEELQQEA------RKAITEQKQKMRRLGSDLTSAQKE 800
Cdd:COG4942 110 LRALYRLgrqpplalllsPEDFLDAVrrlqYLKYLAPARREQAEELRADLaelaalRAELEAERAELEALLAELEEERAA 189
|
170 180 190
....*....|....*....|....*....|....*....
gi 530401913 801 MKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQ 839
Cdd:COG4942 190 LEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
430-653 |
2.38e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 430 SQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFMQIQEAKTMVEEdLQRRLEEFEGE----RERLQRMADSAASLEQ 505
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA-LARRIRALEQElaalEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 506 QLEQVKLTLlqrDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKI 585
Cdd:COG4942 98 ELEAQKEEL---AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530401913 586 ILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQ 653
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
187-789 |
2.43e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 187 EVNGEVRSRRDSICSSVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAqLAALSTKLQAQVEcsh 266
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELE--- 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 267 ssqqrqdSLSSEVDTLKQSCWDLERAMTDLQNMLEaKNASLASSNNDLQVAEEQYQRL---MAKVEDMQRSMLSKDNTVH 343
Cdd:PRK03918 249 -------SLEGSKRKLEEKIRELEERIEELKKEIE-ELEEKVKELKELKEKAEEYIKLsefYEEYLDELREIEKRLSRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 344 DLRQQMTALQSQLQQVQLERTTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARvRLQGEMAHIQVgqmtqagllEHLK 423
Cdd:PRK03918 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE-RLKKRLTGLTP---------EKLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 424 LENVSLSQQLTETQHRSMKEKGRIaAQLQGIEADMldqEAAFMQIQEAKT--------MVEEDLQRRLEEFEGERERLQR 495
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARI-GELKKEIKEL---KKAIEELKKAKGkcpvcgreLTEEHRKELLEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 496 MADSAASLEQQLEQVKL---TLLQRDQQLEALQQehldLMKQLTLTQEALQSRE-QSLDALQTHYDELQARLGELQGEAA 571
Cdd:PRK03918 467 ELKEIEEKERKLRKELReleKVLKKESELIKLKE----LAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 572 SREDTI---CLLQNEKIILEAALQAAKSGKEELdrgarrleegteetsetlEKLREELAIKSgqVEHLQQETaalkKQMQ 648
Cdd:PRK03918 543 SLKKELeklEELKKKLAELEKKLDELEEELAEL------------------LKELEELGFES--VEELEERL----KELE 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 649 KIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRL---DSELKELRQELMQVhgEKRTAEAELSRLHREVAQVRQHMA 725
Cdd:PRK03918 599 PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELaetEKRLEELRKELEEL--EKKYSEEEYEELREEYLELSRELA 676
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530401913 726 DLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELqQEARKAITEQKQKMRR 789
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV-EELREKVKKYKALLKE 739
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
706-942 |
2.86e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 706 AEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkEQMVAVTEANEALKKQIEELQQEARKAITEQKQ 785
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE---RRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 786 kmrrlgsdltsAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQL-RAQGGSSDSSLALHERIQALEAELQAVS 864
Cdd:COG4942 95 -----------LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAvRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530401913 865 HSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALRE 942
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
428-713 |
2.90e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 45.02 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 428 SLSQQLTETQHRSMKEKG---RIAAQLQgiEADMLDQEAAFMQIQEAktmveEDLQRRLEEFEGERERlqrmadsaasle 504
Cdd:pfam05667 230 GLASRLTPEEYRKRKRTKllkRIAEQLR--SAALAGTEATSGASRSA-----QDLAELLSSFSGSSTT------------ 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 505 qQLEQVKLTLLQRDQQLeALQQEHLDLMKQLTLT----QEALQSREQSLDALQTHYDELQARLGELQGEAASREDTIclL 580
Cdd:pfam05667 291 -DTGLTKGSRFTHTEKL-QFTNEAPAATSSPPTKveteEELQQQREEELEELQEQLEDLESSIQELEKEIKKLESSI--K 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 581 QnekiiLEAALQAAKSGKEELdrgarrleegtEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKV- 659
Cdd:pfam05667 367 Q-----VEEELEELKEQNEEL-----------EKQYKVKKKTLDLLPDAEENIAKLQALVDASAQRLVELAGQWEKHRVp 430
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 530401913 660 MVEAYRRDATSKDQLISElkatRKRLDSELKELRQELMQVHGEKRTAEAELSRL 713
Cdd:pfam05667 431 LIEEYRALKEAKSNKEDE----SQRKLEEIKELREKIKEVAEEAKQKEELYKQL 480
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
549-711 |
3.96e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 549 LDALQTHYDELQARLGELQGEAASredticlLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREEL-- 626
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAE-------LEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgn 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 627 AIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKAT----RKRLDSELKELRQELMQVHGE 702
Cdd:COG1579 85 VRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAEleekKAELDEELAELEAELEELEAE 164
|
....*....
gi 530401913 703 KRTAEAELS 711
Cdd:COG1579 165 REELAAKIP 173
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
295-802 |
4.46e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 4.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 295 DLQNMLEAKNaSLASSNndLQVAEEQYQRLMAKVED----MQRSMLSKDNTVHDLR-------QQMTALQSQLQQVQLER 363
Cdd:pfam05483 268 DKANQLEEKT-KLQDEN--LKELIEKKDHLTKELEDikmsLQRSMSTQKALEEDLQiatkticQLTEEKEAQMEELNKAK 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 364 TTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAH--IQVGQMTQAGLLEHLKLENVSLSQQLTETQHRSM 441
Cdd:pfam05483 345 AAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKksSELEEMTKFKNNKEVELEELKKILAEDEKLLDEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 442 KEKGRIAAQLQGIEADML------DQEAAFMQIQ-EAKTMVEEDLQRRLEEF--EGERERLQRMADSAASLEQQLEQVKL 512
Cdd:pfam05483 425 KQFEKIAEELKGKEQELIfllqarEKEIHDLEIQlTAIKTSEEHYLKEVEDLktELEKEKLKNIELTAHCDKLLLENKEL 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 513 TllqrdqqlealqQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEkiiLEAALQ 592
Cdd:pfam05483 505 T------------QEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDE---VKCKLD 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 593 AAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKD 672
Cdd:pfam05483 570 KSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 673 QLISELKATRKRlDSELKELRQELMQVHGEKRTAEA-ELSRLHREVAQVRQH-----MADLEGHLQSAQKERDEMETHLQ 746
Cdd:pfam05483 650 QKFEEIIDNYQK-EIEDKKISEEKLLEEVEKAKAIAdEAVKLQKEIDKRCQHkiaemVALMEKHKHQYDKIIEERDSELG 728
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 530401913 747 SLQFDKEQMVAVTEANEALKKQIEELQQEARKAIT---EQKQKMRRLGSDLTSAQKEMK 802
Cdd:pfam05483 729 LYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEiekEEKEKLKMEAKENTAILKDKK 787
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
756-1008 |
4.72e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 4.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 756 VAVTEANEALKKQIEELQQEarkaITEQKQKMRRLGSDLTSAQKEMktkhKAYENAVGILSRRLQEALAAKEAADAELGQ 835
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQE----IAELEKELAALKKEEKALLKQL----AALERRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 836 LRAQggssdsslalherIQALEAELQAvshsktlLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEES 915
Cdd:COG4942 88 LEKE-------------IAELRAELEA-------QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 916 NKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKE 995
Cdd:COG4942 148 RREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
250
....*....|...
gi 530401913 996 KVNSLKEQVAAAK 1008
Cdd:COG4942 228 LIARLEAEAAAAA 240
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
983-1204 |
5.67e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 5.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 983 VQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQ 1062
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1063 FQAELAEARAQLQLLQKQLDEQLSKQPVG---NQE--------MENLKWEVDQKEREIQSLKQQLDLTEQQgRKELEGLQ 1131
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLAlllSPEdfldavrrLQYLKYLAPARREQAEELRADLAELAAL-RAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530401913 1132 QLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKTRKEPKGEASSSNPA 1204
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
702-926 |
6.34e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 702 EKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLqfdkEQMVAVTEAN-EALKKQIEELQQEARKAI 780
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL----ARRIRALEQElAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 781 TEQKQKMRRLGSDLTSAQKEMKTKHKAY---ENAVGILSRRLQEALAAKEAADAELGQLRAQggssdsslalHERIQALE 857
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRAD----------LAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530401913 858 AELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHE 926
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
682-1069 |
8.45e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 8.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 682 RKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAqkerdemETHLQSLQfdkeQMVAVTEA 761
Cdd:COG3096 280 RRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAA-------SDHLNLVQ----TALRQQEK 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 762 NEALKKQIEEL------QQEARKAITEQKQkMRRLGSDLTSAQ-KEMKTKHKAYENAVGILSRRlqealaakeaadaelg 834
Cdd:COG3096 349 IERYQEDLEELterleeQEEVVEEAAEQLA-EAEARLEAAEEEvDSLKSQLADYQQALDVQQTR---------------- 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 835 qlraqggssdsSLALHERIQALEaELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEE 914
Cdd:COG3096 412 -----------AIQYQQAVQALE-KARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYE 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 915 SNKKLALELEHEkgklTGLGQSNAALREHNSilETALAKREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQAS----- 989
Cdd:COG3096 480 LVCKIAGEVERS----QAWQTARELLRRYRS--QQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQldaae 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 990 -LEKEKEKVNSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREG---KHSQEIAQFQA 1065
Cdd:COG3096 554 eLEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGealADSQEVTAAMQ 633
|
....
gi 530401913 1066 ELAE 1069
Cdd:COG3096 634 QLLE 637
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
463-852 |
8.81e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 8.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 463 AAFMQIQ-EAKTMVEEDLQRRLEEFEG------ERERLQRMADSAASLEQqleqvkltllqRDQQLEALQQ---EHLDLM 532
Cdd:COG3096 271 ADYMRHAnERRELSERALELRRELFGArrqlaeEQYRLVEMARELEELSA-----------RESDLEQDYQaasDHLNLV 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 533 KQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGA------- 605
Cdd:COG3096 340 QTALRQQEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAiqyqqav 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 606 ---RRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQM---QKIKEQF-----LQQKVMVEAYRRDATSK-DQ 673
Cdd:COG3096 420 qalEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLsvaDAARRQFekayeLVCKIAGEVERSQAWQTaRE 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 674 LISE------LKATRKRLDSELKELRQELMQvhgeKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQS 747
Cdd:COG3096 500 LLRRyrsqqaLAQRLQQLRAQLAELEQRLRQ----QQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAE 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 748 LQfdkEQMVAVTEANEALKKQIEELQQEARKAITEQkQKMRRL----GSDLTSAQKEMKTKHKAYENAVGILSRRLQEAL 823
Cdd:COG3096 576 AV---EQRSELRQQLEQLRARIKELAARAPAWLAAQ-DALERLreqsGEALADSQEVTAAMQQLLEREREATVERDELAA 651
|
410 420 430
....*....|....*....|....*....|
gi 530401913 824 AAKEAADAELgQLRAQGGSSDSSL-ALHER 852
Cdd:COG3096 652 RKQALESQIE-RLSQPGGAEDPRLlALAER 680
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
176-397 |
8.83e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 8.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 176 AAAAEHQDQGQEvnGEVRSRRDSICSSVSLESSAAETQ---EEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLA 252
Cdd:PRK11281 27 ARAASNGDLPTE--ADVQAQLDALNKQKLLEAEDKLVQqdlEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 253 ALSTKLQAQVecshssQQRQDSLSseVDTLKQSCWDLERAMTDLQNMLEAKNASLASsnndLQVAEEQYQRLMAkvEDMQ 332
Cdd:PRK11281 105 ALKDDNDEET------RETLSTLS--LRQLESRLAQTLDQLQNAQNDLAEYNSQLVS----LQTQPERAQAALY--ANSQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 333 RSM----------LSKDNTVHDLRQQMTALQSQLQQVQLER-------TTLTSKLKaSQAEISSLQSVRQwyQQQLALAQ 395
Cdd:PRK11281 171 RLQqirnllkggkVGGKALRPSQRVLLQAEQALLNAQNDLQrkslegnTQLQDLLQ-KQRDYLTARIQRL--EHQLQLLQ 247
|
..
gi 530401913 396 EA 397
Cdd:PRK11281 248 EA 249
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
477-814 |
1.07e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 477 EDLQRRLEEFEGERERLQRMADSAASL-------------EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQ 543
Cdd:PRK04863 796 EELAERYATLSFDVQKLQRLHQAFSRFigshlavafeadpEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 544 SREQSLDALQTHYDE-LQARLGELQGEaasredticllqnekiiLEAALQAAKSgkeeldrgARRLEEGTEETSETLEKL 622
Cdd:PRK04863 876 ALNRLLPRLNLLADEtLADRVEEIREQ-----------------LDEAEEAKRF--------VQQHGNALAQLEPIVSVL 930
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 623 REELAiksgQVEHLQQETAALKKQMQKIKEQFLQQKVMVEayRRDATSKDQLISELKAtrkrlDSELKE-LRQELMQVHG 701
Cdd:PRK04863 931 QSDPE----QFEQLKQDYQQAQQTQRDAKQQAFALTEVVQ--RRAHFSYEDAAEMLAK-----NSDLNEkLRQRLEQAEQ 999
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 702 EKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFdkeqmVAVTEANEALKKQIEELQQEAR---- 777
Cdd:PRK04863 1000 ERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGV-----PADSGAEERARARRDELHARLSanrs 1074
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 530401913 778 ------KAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGI 814
Cdd:PRK04863 1075 rrnqleKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
504-784 |
1.07e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 504 EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNE 583
Cdd:TIGR04523 369 QNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 584 KIILEAALQAAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKVMVEA 663
Cdd:TIGR04523 449 DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 664 YRRDATSKDQLISELKATRKRLDSELKELRQElmqvhGEKRTAEAELSRLHREvaqvrqhmadlEGHLQSAQKERDEMET 743
Cdd:TIGR04523 529 LESEKKEKESKISDLEDELNKDDFELKKENLE-----KEIDEKNKEIEELKQT-----------QKSLKKKQEEKQELID 592
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 530401913 744 HLQSLQFD-KEQMVAVTEANEALKKQIEELQQEARKAITEQK 784
Cdd:TIGR04523 593 QKEKEKKDlIKEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
633-1257 |
1.09e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 633 VEHLQQETAAlKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLiSELKATRKRLDSELKELRQELmqvhgekrtAEAELSR 712
Cdd:COG4913 231 VEHFDDLERA-HEALEDAREQIELLEPIRELAERYAAARERL-AELEYLRAALRLWFAQRRLEL---------LEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 713 LHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEqmvavteanEALKKQIEELQQEARK---AITEQKQKMRR 789
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRL---------EQLEREIERLERELEErerRRARLEALLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 790 LGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRaqggssdsslalhERIQALEAELQAVSHSKTL 869
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLR-------------RELRELEAEIASLERRKSN 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 870 LEKELQEVIALTSQELEESREKVL---ELEDELQESRGFRKKIKRL----------EESNKKLALEL---EHEKGKLTGL 933
Cdd:COG4913 438 IPARLLALRDALAEALGLDEAELPfvgELIEVRPEEERWRGAIERVlggfaltllvPPEHYAAALRWvnrLHLRGRLVYE 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 934 GqsnAALREHNSILETALAKREADLVQLNLQ-----VQAVLQRKE-----EEDRQMKHLVQALQASLekekekvnslkeQ 1003
Cdd:COG4913 518 R---VRTGLPDPERPRLDPDSLAGKLDFKPHpfrawLEAELGRRFdyvcvDSPEELRRHPRAITRAG------------Q 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1004 VAAAKVEAGHNRRHFKAASLEL-SEVKKELQAKEHLVQKLQAEADDLQiregkhsQEIAQFQAELAEARAQLQLLqkqld 1082
Cdd:COG4913 583 VKGNGTRHEKDDRRRIRSRYVLgFDNRAKLAALEAELAELEEELAEAE-------ERLEALEAELDALQERREAL----- 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1083 eqlskqpvgnQEMENLKWE---VDQKEREIQSLKQQLDLTEQqGRKELEGLQQllqnvksELEMAQEDLSMTQKDKFMLQ 1159
Cdd:COG4913 651 ----------QRLAEYSWDeidVASAEREIAELEAELERLDA-SSDDLAALEE-------QLEELEAELEELEEELDELK 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1160 AKVSELKNNMKtllqqnqqlKLDLRRGAAKTRKEPKGEASSSNPATpikipdcpvpasLLEELLR--PPPAVSKEPLKNL 1237
Cdd:COG4913 713 GEIGRLEKELE---------QAEEELDELQDRLEAAEDLARLELRA------------LLEERFAaaLGDAVERELRENL 771
|
650 660
....*....|....*....|
gi 530401913 1238 NSCLQQLKQEMDSLQRQMEE 1257
Cdd:COG4913 772 EERIDALRARLNRAEEELER 791
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
484-927 |
1.23e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 42.75 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 484 EEFEGERERLQRMADSAA---SLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQ 560
Cdd:pfam19220 3 QRNELLRVRLGEMADRLEdlrSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 561 ARLGELQGEAASredticllqnekiiLEAALQAAKSGKEELdrgarrleegteetsetleklREELAIKSGQVEHLQQET 640
Cdd:pfam19220 83 GELEELVARLAK--------------LEAALREAEAAKEEL---------------------RIELRDKTAQAEALERQL 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 641 AALKKQMQKIKEQflqqkvmVEAYRRDATSKDQLISelkatrkRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQV 720
Cdd:pfam19220 128 AAETEQNRALEEE-------NKALREEAQAAEKALQ-------RAEGELATARERLALLEQENRRLQALSEEQAAELAEL 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 721 RQHMADLEGHLQSAQKERDEMETHLqslqfdkeqmVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQK- 799
Cdd:pfam19220 194 TRRLAELETQLDATRARLRALEGQL----------AAEQAERERAEAQLEEAVEAHRAERASLRMKLEALTARAAATEQl 263
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 800 --EMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQggssdsslalHERIQALEAELQAVSHSKTLLEKELQEV 877
Cdd:pfam19220 264 laEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEAD----------LERRTQQFQEMQRARAELEERAEMLTKA 333
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 530401913 878 IALTSQELEESREKVLELEDELQE-SRGFRKKIKRLEESNKKLALELEHEK 927
Cdd:pfam19220 334 LAAKDAALERAEERIASLSDRIAElTKRFEVERAALEQANRRLKEELQRER 384
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
327-1065 |
1.41e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 327 KVEDMQRSmLSKDNTVHD-----LRQQMTALQSQLQQVQLERTTLtsklkasqAEISSLQSVRQwyqqqlalaQEARVRL 401
Cdd:pfam15921 86 QVKDLQRR-LNESNELHEkqkfyLRQSVIDLQTKLQEMQMERDAM--------ADIRRRESQSQ---------EDLRNQL 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 402 QGEMAHIQVGQMTQAGLLEhlklenvSLSQQLTETQHRSMKEKGriaaQLQGIEADMLD-QEAAFMQIQEAKTM------ 474
Cdd:pfam15921 148 QNTVHELEAAKCLKEDMLE-------DSNTQIEQLRKMMLSHEG----VLQEIRSILVDfEEASGKKIYEHDSMstmhfr 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 475 -VEEDLQRRLEEFEGErerLQRMADSAASLEQQLEQVKltlLQRDQQLEALQQEHLDLMKQLT---------LTQEALQS 544
Cdd:pfam15921 217 sLGSAISKILRELDTE---ISYLKGRIFPVEDQLEALK---SESQNKIELLLQQHQDRIEQLIseheveitgLTEKASSA 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 545 REQS------LDALQT-----------HYDELQARLGELQGE--AASR--EDTICLLQNEKIILEAALQAAKSGKEELDR 603
Cdd:pfam15921 291 RSQAnsiqsqLEIIQEqarnqnsmymrQLSDLESTVSQLRSElrEAKRmyEDKIEELEKQLVLANSELTEARTERDQFSQ 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 604 GARRLEEGTEETSETLEKLREELAIKSGQ--------------VEHLQQE-----------TAALKKQMQKIKEQFLQQK 658
Cdd:pfam15921 371 ESGNLDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRElddrnmevqrlEALLKAMKSECQGQMERQM 450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 659 VMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAE---AELSRLHREVAQVRQHMADLEGHLQSAQ 735
Cdd:pfam15921 451 AAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSdltASLQEKERAIEATNAEITKLRSRVDLKL 530
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 736 KErdemethLQSLQFDKEQMVAVTEANEALKKQIEElQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGIL 815
Cdd:pfam15921 531 QE-------LQHLKNEGDHLRNVQTECEALKLQMAE-KDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR 602
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 816 SRRLQEALAAKEAADAELGQLRAQggSSDSSLALHERIQALEAELQAVSHSKTLLEKELQEVialtsqelEESREKVLEL 895
Cdd:pfam15921 603 RLELQEFKILKDKKDAKIRELEAR--VSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEV--------KTSRNELNSL 672
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 896 EDELQE-SRGFRKKIKRLEESNKKLAL-------ELEHEKGKLTGL-GQSNAALREHNSILETALAKR-EADLVQLNLQv 965
Cdd:pfam15921 673 SEDYEVlKRNFRNKSEEMETTTNKLKMqlksaqsELEQTRNTLKSMeGSDGHAMKVAMGMQKQITAKRgQIDALQSKIQ- 751
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 966 qaVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAA--AKVEAGHNRRHFKAASLELSEVKKELQAKE--HLVQK 1041
Cdd:pfam15921 752 --FLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGelEVLRSQERRLKEKVANMEVALDKASLQFAEcqDIIQR 829
|
810 820
....*....|....*....|....
gi 530401913 1042 LQAEADDLQIregKHSQEIAQFQA 1065
Cdd:pfam15921 830 QEQESVRLKL---QHTLDVKELQG 850
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
202-333 |
1.42e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 42.65 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 202 SVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAAlstklQAQVecSHSSQQRQDSLSSEVDT 281
Cdd:PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDS-----EKQV--SARALAQVELLNQQIAA 148
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 530401913 282 LKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAeeqyqrLMAKVEDMQR 333
Cdd:PRK09039 149 LRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA------LAQRVQELNR 194
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
682-1054 |
1.42e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 682 RKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQslQFDKEQM--VAVT 759
Cdd:PRK04863 281 RRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALR--QQEKIERyqADLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 760 EANEALkkqieELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRR-LQEALAAKEAAdaelgqlRA 838
Cdd:PRK04863 359 ELEERL-----EEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRaIQYQQAVQALE-------RA 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 839 QGGSSDSSLALH---ERIQALEAELQAVSHSKTLLEKELQEVIALTSQeLEESREKVLELEDELQESRG---FRKKIKRL 912
Cdd:PRK04863 427 KQLCGLPDLTADnaeDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQ-FEQAYQLVRKIAGEVSRSEAwdvARELLRRL 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 913 EESnKKLALELEHEKGKLTGLGQS-------NAALREHN----------SILETALAKREADLVQLNLQVQAVLQRKEEE 975
Cdd:PRK04863 506 REQ-RHLAEQLQQLRMRLSELEQRlrqqqraERLLAEFCkrlgknlddeDELEQLQEELEARLESLSESVSEARERRMAL 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 976 DRQMKHLvQALQASLEKE-------KEKVNSLKEQVAAAkVEAGHNRRHFKAASLE----LSEVKKELQAKEhlvQKLQA 1044
Cdd:PRK04863 585 RQQLEQL-QARIQRLAARapawlaaQDALARLREQSGEE-FEDSQDVTEYMQQLLErereLTVERDELAARK---QALDE 659
|
410
....*....|
gi 530401913 1045 EADDLQIREG 1054
Cdd:PRK04863 660 EIERLSQPGG 669
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
633-1017 |
1.76e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 633 VEHLQQETAALKKQMQKIKEqflqqkvmvEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSR 712
Cdd:pfam02463 153 ERRLEIEEEAAGSRLKRKKK---------EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 713 LHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGS 792
Cdd:pfam02463 224 EYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 793 DLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQggssdsSLALHERIQALEAELQAVSHSKTLLEK 872
Cdd:pfam02463 304 KLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK------REAEEEEEEELEKLQEKLEQLEEELLA 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 873 ELQEviaLTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALA 952
Cdd:pfam02463 378 KKKL---ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELE 454
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530401913 953 KREADLVQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRH 1017
Cdd:pfam02463 455 KQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDG 519
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
391-607 |
2.04e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 391 LALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQhrsmKEKGRIAAQLQGIEADMLDQEAAFMQIQE 470
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE----RRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 471 AKTMVEEDLQRRLEEFEGERERLQRM-----------ADSAASLEQQLEQVKLTLLQRDQQLEALQQEhldlMKQLTLTQ 539
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRAD----LAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530401913 540 EALQSREQSLDALQthyDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEELDRGARR 607
Cdd:COG4942 167 AELEAERAELEALL---AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
644-817 |
2.44e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 42.35 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 644 KKQMQKIKEQFLQQK----VMVEAY-------RRDATSKD--QLISELKATRKRLDSELKELRQELMQVHGEKRTAEAEL 710
Cdd:TIGR01612 1506 AKAIEKNKELFEQYKkdvtELLNKYsalaiknKFAKTKKDseIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDA 1585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 711 S---RLHREVAQVRQHMADLEGHL----------QSAQKERDEMETHLQSLQFDKE--QMVAVTEANEALKKQIEELQQE 775
Cdd:TIGR01612 1586 AkndKSNKAAIDIQLSLENFENKFlkisdikkkiNDCLKETESIEKKISSFSIDSQdtELKENGDNLNSLQEFLESLKDQ 1665
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 530401913 776 aRKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYEnaVGILSR 817
Cdd:TIGR01612 1666 -KKNIEDKKKELDELDSEIEKIEIDVDQHKKNYE--IGIIEK 1704
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
1021-1152 |
3.63e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.19 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1021 ASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKhSQEIAQFQAEL--AEARAQLQLLQKQLDEQLSKQPVGNQ-EMEN 1097
Cdd:COG1566 74 ARLDPTDLQAALAQAEAQLAAAEAQLARLEAELGA-EAEIAAAEAQLaaAQAQLDLAQRELERYQALYKKGAVSQqELDE 152
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 530401913 1098 LKWEVDQKEREIQSLKQQLDLTEQQ--GRKELEGLQQLLQNVKSELEMAQEDLSMTQ 1152
Cdd:COG1566 153 ARAALDAAQAQLEAAQAQLAQAQAGlrEEEELAAAQAQVAQAEAALAQAELNLARTT 209
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
998-1142 |
4.13e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 998 NSLKEQVAAAKVEAghnRRHFKAASLELSEVKKE--LQAKEHlVQKLQAEAD-DLQIREgkhsQEIAQFQAELAEARAQL 1074
Cdd:PRK12704 27 KIAEAKIKEAEEEA---KRILEEAKKEAEAIKKEalLEAKEE-IHKLRNEFEkELRERR----NELQKLEKRLLQKEENL 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530401913 1075 QLLQKQLDEQlskqpvgNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELE---GL------QQLLQNVKSELE 1142
Cdd:PRK12704 99 DRKLELLEKR-------EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELErisGLtaeeakEILLEKVEEEAR 168
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
632-790 |
4.38e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 4.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 632 QVEHLQQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQ-------ELMQVHGEKr 704
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEArikkyeeQLGNVRNNK- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 705 taeaELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkeqmvavtEANEALKKQIEELQQEARKAITEQK 784
Cdd:COG1579 90 ----EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELE----------AELAELEAELEEKKAELDEELAELE 155
|
....*.
gi 530401913 785 QKMRRL 790
Cdd:COG1579 156 AELEEL 161
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
482-812 |
4.57e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 4.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 482 RLEEFEGERERL-QRMADSAAS------LEQQLEQVKLTLLQ------RDQQLEALQQEHLDLMKQLTLTQEALQSREQS 548
Cdd:COG3096 786 RLEELRAERDELaEQYAKASFDvqklqrLHQAFSQFVGGHLAvafapdPEAELAALRQRRSELERELAQHRAQEQQLRQQ 865
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 549 LDALQthydELQARLGELQGEAASREDTIclLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSEtlekLREELAi 628
Cdd:COG3096 866 LDQLK----EQLQLLNKLLPQANLLADET--LADRLEELREELDAAQEAQAFIQQHGKALAQLEPLVAV----LQSDPE- 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 629 ksgQVEHLQQETAALKKQMQKIKEQFLQQKVMVEayRRDATSKDQLISELKATrkrldSELKE-LRQELMQVHGEKRTAE 707
Cdd:COG3096 935 ---QFEQLQADYLQAKEQQRRLKQQIFALSEVVQ--RRPHFSYEDAVGLLGEN-----SDLNEkLRARLEQAEEARREAR 1004
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 708 AELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLqfdkeQMVAVTEANEALKKQIEELQQEAR---------- 777
Cdd:COG3096 1005 EQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEEL-----GVQADAEAEERARIRRDELHEELSqnrsrrsqle 1079
|
330 340 350
....*....|....*....|....*....|....*
gi 530401913 778 KAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAV 812
Cdd:COG3096 1080 KQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAK 1114
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
637-1171 |
5.06e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 5.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 637 QQETAALKKQMQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQ----VHGEKRTAEAELSR 712
Cdd:TIGR00618 151 QGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCmpdtYHERKQVLEKELKH 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 713 LHREVAQVRQHMADLEgHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEAR-----KAITEQKQKM 787
Cdd:TIGR00618 231 LREALQQTQQSHAYLT-QKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPlaahiKAVTQIEQQA 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 788 RRLGSDLTSaQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSSDSSLALHERIQALEAELQAVSHSK 867
Cdd:TIGR00618 310 QRIHTELQS-KMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 868 TLLEKELQeviaLTSQELEESREKVLELEDELQESRGFRKKIKRLEE----SNKKLALELEHEKGKLTGLGQSNAALREH 943
Cdd:TIGR00618 389 TTLTQKLQ----SLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKqqelQQRYAELCAAAITCTAQCEKLEKIHLQES 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 944 NSILEtALAKREADLVQLNLQVQ-------AVLQRKEEEDRQMK----HLVQALQAS-------------------LEKE 993
Cdd:TIGR00618 465 AQSLK-EREQQLQTKEQIHLQETrkkavvlARLLELQEEPCPLCgsciHPNPARQDIdnpgpltrrmqrgeqtyaqLETS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 994 KEKV----NSLKEQVAAAKVEAGHNRRHFKAASLELSEVKKELQAKEHLVQKLQAEADD----------------LQIRE 1053
Cdd:TIGR00618 544 EEDVyhqlTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKlseaedmlaceqhallRKLQP 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1054 GKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPV-----GNQEMENLKWEVDQ-KEREIQSLKQQLdlteqqgRKEL 1127
Cdd:TIGR00618 624 EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVrehalSIRVLPKELLASRQlALQKMQSEKEQL-------TYWK 696
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 530401913 1128 EGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMKT 1171
Cdd:TIGR00618 697 EMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDA 740
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
296-573 |
6.26e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 6.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 296 LQNMLEAKNASLASSNNDLqvaEEQYQRLMAKVEDMQRSmlskdntVHDLRQQ--MTALQSQLQQVQLERTTLTSKLKAS 373
Cdd:COG3206 162 LEQNLELRREEARKALEFL---EEQLPELRKELEEAEAA-------LEEFRQKngLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 374 QAEISSLQSVRQWYQQQLALAQEARVRLQGEmahiQVGQMTQAGLLEhLKLENVSLSQQLTEtQHRSMKEkgriaaqlqg 453
Cdd:COG3206 232 RAELAEAEARLAALRAQLGSGPDALPELLQS----PVIQQLRAQLAE-LEAELAELSARYTP-NHPDVIA---------- 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 454 ieadmLDQeaafmQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEhldlmk 533
Cdd:COG3206 296 -----LRA-----QIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLERE------ 359
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 530401913 534 qltltqealqsreqsLDALQTHYDELQARLGELQGEAASR 573
Cdd:COG3206 360 ---------------VEVARELYESLLQRLEEARLAEALT 384
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
687-903 |
6.49e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 40.29 E-value: 6.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 687 SELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKE-----RDEMETHLQSLQFDKeQMVAVTEA 761
Cdd:pfam00038 54 KEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQKYEDELNLRTSAENDlvglrKDLDEATLARVDLEA-KIESLKEE 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 762 NEALKKQIEELQQEARKAITEQKQKMRR---LGSDLTSAQKEMKTKHKAyenavgiLSRRLQEALAAKEAADAELGQLRA 838
Cdd:pfam00038 133 LAFLKKNHEEEVRELQAQVSDTQVNVEMdaaRKLDLTSALAEIRAQYEE-------IAAKNREEAEEWYQSKLEELQQAA 205
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530401913 839 QGGSSDSSLALHE------RIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESR 903
Cdd:pfam00038 206 ARNGDALRSAKEEitelrrTIQSLEIELQSLKKQKASLERQLAETEERYELQLADYQELISELEAELQETR 276
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
622-774 |
6.56e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.33 E-value: 6.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 622 LREELAIKSGQVEHLQQETAALKKQ--MQKIKEQFLQQKVMVEAYRRDATSKDQ-----LISELKATRKRLDSELKELRQ 694
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADLlsLERQGNQDLQDSVANLRASLSAAEAERsrlqaLLAELAGAGAAAEGRAGELAQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 695 ELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQfdkeqmvavTEANEALKKQIEELQQ 774
Cdd:PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG---------RRLNVALAQRVQELNR 194
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
226-324 |
6.90e-03 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 39.14 E-value: 6.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 226 LEGQLEALSLEASQALKEKAELQAQLAALSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNA 305
Cdd:pfam08614 55 LEQLLAQLREELAELYRSRGELAQRLVDLNEELQELEKKLREDERRLAALEAERAQLEEKLKDREEELREKRKLNQDLQD 134
|
90
....*....|....*....
gi 530401913 306 SLASSNNDLQVAEEQYQRL 324
Cdd:pfam08614 135 ELVALQLQLNMAEEKLRKL 153
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
211-790 |
7.09e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 7.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 211 ETQEEMLQVLKEKMRLEgQLEALSLEASQALKEKAELQAQLAALstKLQAQVECSHSSQQRQDSLSSEVDTLKQSCWDLE 290
Cdd:COG4913 239 RAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAAL--RLWFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 291 RAMTDLQNML-EAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRsmlskdntvhDLRQQMTALQSQLQQVQLERTTLTSK 369
Cdd:COG4913 316 ARLDALREELdELEAQIRGNGGDRLEQLEREIERLERELEERER----------RRARLEALLAALGLPLPASAEEFAAL 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 370 LKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQvgqmtqaGLLEHLKLENVSLSQQLTETqhrsmkeKGRIAA 449
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE-------AEIASLERRKSNIPARLLAL-------RDALAE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 450 QLQGIEADML----------------------------------DQEAAFMQIQEAktmveEDLQRRL--EEFEGERERL 493
Cdd:COG4913 452 ALGLDEAELPfvgelievrpeeerwrgaiervlggfaltllvppEHYAAALRWVNR-----LHLRGRLvyERVRTGLPDP 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 494 QRMADSAASLEQQLEqVKLT--------LLQRDQQL------EALQQEHldlmKQLTLT--------------QEALQSR 545
Cdd:COG4913 527 ERPRLDPDSLAGKLD-FKPHpfrawleaELGRRFDYvcvdspEELRRHP----RAITRAgqvkgngtrhekddRRRIRSR 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 546 -------EQSLDALQTHYDELQARLGELQGEAASREDticLLQNEKIILEAALQAAKSGKEELDRGARRLEEGTEETSet 618
Cdd:COG4913 602 yvlgfdnRAKLAALEAELAELEEELAEAEERLEALEA---ELDALQERREALQRLAEYSWDEIDVASAEREIAELEAE-- 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 619 leklREELAIKSGQVEHLQQETAALKKQMQKIKEQFLQQKvmvEAYRRDATSKDQLISELKATRKRLDsELKELRQELMQ 698
Cdd:COG4913 677 ----LERLDASSDDLAALEEQLEELEAELEELEEELDELK---GEIGRLEKELEQAEEELDELQDRLE-AAEDLARLELR 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 699 VHGEKRTAEAELSRLHREV-AQVRQHMADLEGHLQSAQKE-RDEMETHLQSLQFDKEQMVAVTEANEALKKQIEELQQEa 776
Cdd:COG4913 749 ALLEERFAAALGDAVERELrENLEERIDALRARLNRAEEElERAMRAFNREWPAETADLDADLESLPEYLALLDRLEED- 827
|
650
....*....|....
gi 530401913 777 rkAITEQKQKMRRL 790
Cdd:COG4913 828 --GLPEYEERFKEL 839
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
970-1170 |
7.27e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 7.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 970 QRKEEEDRQMKHLVQAL---QASLEKEKEKVNSLKEQVAAAKveaghnrrHFKAASLELSEVKKELQAKEhlVQKLQAEA 1046
Cdd:TIGR02168 172 ERRKETERKLERTRENLdrlEDILNELERQLKSLERQAEKAE--------RYKELKAELRELELALLVLR--LEELREEL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 1047 DDLQIREGKHSQEIAQFQAELAEARAQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLdlteQQGRKE 1126
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL----ANLERQ 317
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 530401913 1127 LEGLQQLLQNVKSELEMAQEDLSMtqkdkfmLQAKVSELKNNMK 1170
Cdd:TIGR02168 318 LEELEAQLEELESKLDELAEELAE-------LEEKLEELKEELE 354
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
457-567 |
7.91e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 7.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 457 DMLDQEAAFMQIqEAKTMVEE--DLQRRLEEFEGERERLQRMADS-----AASLEQQLEQVKltllqrdQQLEALQ---Q 526
Cdd:COG0542 393 DLIDEAAARVRM-EIDSKPEEldELERRLEQLEIEKEALKKEQDEasferLAELRDELAELE-------EELEALKarwE 464
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 530401913 527 EHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQ 567
Cdd:COG0542 465 AEKELIEEIQELKEELEQRYGKIPELEKELAELEEELAELA 505
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
675-970 |
8.00e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 675 ISELKATRKRLDSELKELRQELMQVHGEKRTAEAELSRLHREVAQVRQHMADLEGHLQSAQKERDEMETHLQSLQFDKEQ 754
Cdd:COG4372 47 LEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQD 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 755 MVAVTEANEALKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELG 834
Cdd:COG4372 127 LEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAE 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 835 QLRAQGGSSDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEE 914
Cdd:COG4372 207 KLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELE 286
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 530401913 915 SNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQ 970
Cdd:COG4372 287 ALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADL 342
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
200-320 |
9.13e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 9.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530401913 200 CSSVSLESSAaeTQEEMLQVLKEKMRLEGQLEALSLEASQALKEK-AELQAQLAALSTKLQAQvecsHSSQQRQDSLSSE 278
Cdd:COG0542 399 AARVRMEIDS--KPEELDELERRLEQLEIEKEALKKEQDEASFERlAELRDELAELEEELEAL----KARWEAEKELIEE 472
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 530401913 279 VDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQ--VAEEQ 320
Cdd:COG0542 473 IQELKEELEQRYGKIPELEKELAELEEELAELAPLLReeVTEED 516
|
|
| |
