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Conserved domains on  [gi|5453904|ref|NP_006470|]
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RAD51-associated protein 1 isoform b [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RAD51_interact super family cl24311
RAD51 interacting motif; This motif interacts with RAD51.
311-332 8.67e-09

RAD51 interacting motif; This motif interacts with RAD51.


The actual alignment was detected with superfamily member pfam15696:

Pssm-ID: 434865  Cd Length: 39  Bit Score: 50.39  E-value: 8.67e-09
                          10        20
                  ....*....|....*....|..
gi 5453904    311 PNQSLRLGLSRLARVKPLHPNA 332
Cdd:pfam15696  18 PSQPLRLGLSRLARVKPLHPNV 39
 
Name Accession Description Interval E-value
RAD51_interact pfam15696
RAD51 interacting motif; This motif interacts with RAD51.
311-332 8.67e-09

RAD51 interacting motif; This motif interacts with RAD51.


Pssm-ID: 434865  Cd Length: 39  Bit Score: 50.39  E-value: 8.67e-09
                          10        20
                  ....*....|....*....|..
gi 5453904    311 PNQSLRLGLSRLARVKPLHPNA 332
Cdd:pfam15696  18 PSQPLRLGLSRLARVKPLHPNV 39
 
Name Accession Description Interval E-value
RAD51_interact pfam15696
RAD51 interacting motif; This motif interacts with RAD51.
311-332 8.67e-09

RAD51 interacting motif; This motif interacts with RAD51.


Pssm-ID: 434865  Cd Length: 39  Bit Score: 50.39  E-value: 8.67e-09
                          10        20
                  ....*....|....*....|..
gi 5453904    311 PNQSLRLGLSRLARVKPLHPNA 332
Cdd:pfam15696  18 PSQPLRLGLSRLARVKPLHPNV 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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