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Conserved domains on  [gi|548954688|emb|CCN27423|]
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ribosomal protein S4 (chloroplast) [Bartramia ithyphylla]

Protein Classification

30S ribosomal protein S4( domain architecture ID 11414071)

30S ribosomal protein S4 binds directly to 16S rRNA and plays an important role in translational accuracy

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-202 1.77e-134

ribosomal protein S4; Reviewed


:

Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 374.94  E-value: 1.77e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688   1 MSRYRGPRVKIIRRLGALPGLTNKTPQLKSSSINQSTSnKKISQYRIRLEEKQKLRFHYGITERQLLNYVRIARKAKGST 80
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQSRS-GKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGST 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688  81 GEVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPHDFITIKDRPKSQAIISKNIDFYQKYE 160
Cdd:CHL00113  80 GQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREE 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 548954688 161 IPNHLTYNSSENKGLVNQILDRESIGLKINELLVVEYYSRQA 202
Cdd:CHL00113 160 LPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
 
Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-202 1.77e-134

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 374.94  E-value: 1.77e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688   1 MSRYRGPRVKIIRRLGALPGLTNKTPQLKSSSINQSTSnKKISQYRIRLEEKQKLRFHYGITERQLLNYVRIARKAKGST 80
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQSRS-GKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGST 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688  81 GEVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPHDFITIKDRPKSQAIISKNIDFYQKYE 160
Cdd:CHL00113  80 GQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREE 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 548954688 161 IPNHLTYNSSENKGLVNQILDRESIGLKINELLVVEYYSRQA 202
Cdd:CHL00113 160 LPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-200 2.21e-85

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 250.76  E-value: 2.21e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688   1 MSRYRGPRVKIIRRLG-ALPGLTNKtpqlKSSSINQST-------SNKKISQYRIRLEEKQKLRFHYGITERQLLNYVRI 72
Cdd:COG0522    1 MARYTGPKCKLCRREGvKLFLKGER----KCALERRPYppgqhgqRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFEE 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688  73 ARKAKGSTGEVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPHDFITIKDRPKSQAIISKN 152
Cdd:COG0522   77 AARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEA 156

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 548954688 153 IDFYQKYEIPNHLTYNSSENKGLVNQILDRESIGLKINELLVVEYYSR 200
Cdd:COG0522  157 LESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-200 1.46e-74

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 223.33  E-value: 1.46e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688    3 RYRGPRVKIIRRLGALPGLTNKTPQLKSSSI--NQSTSNKKISQYRIRLEEKQKLRFHYGITERQLLNYVRIARKAKGST 80
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGKSRKLLLKRKYPpgQHGQRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLKGNT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688   81 GEVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPHDFITIKDRPKSQAIISKNIDFYQKYE 160
Cdd:TIGR01017  81 GENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNGQRN 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 548954688  161 IPNHLTYNSSENKGLVNQILDRESIGLKINELLVVEYYSR 200
Cdd:TIGR01017 161 IPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-89 1.48e-21

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 84.52  E-value: 1.48e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688    3 RYRGPRVKIIRRLGALPGLTNKTPQLKSSSIN---------QSTSNKKISQYRIRLEEKQKLRFHYGITERQLLNYVRIA 73
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRCHRELKVAQNrreypkypgQHGKIRKLSEYLLQLREKQKVRRKYGLLEKQLRKLYDMG 80

                          90
                  ....*....|....*.
gi 548954688   74 RKAKGSTGEVLLQLLE 89
Cdd:pfam00163  81 LKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 90-156 1.80e-18

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 75.75  E-value: 1.80e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 548954688  90 MRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPHDFITIKDRPKSQAIISKNIDFY 156
Cdd:cd00165    1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYEDKKLL 67
S4 smart00363
S4 RNA-binding domain;
90-145 2.11e-12

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 59.53  E-value: 2.11e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 548954688    90 MRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPHDFITIKDRPKS 145
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
 
Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-202 1.77e-134

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 374.94  E-value: 1.77e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688   1 MSRYRGPRVKIIRRLGALPGLTNKTPQLKSSSINQSTSnKKISQYRIRLEEKQKLRFHYGITERQLLNYVRIARKAKGST 80
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQSRS-GKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGST 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688  81 GEVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPHDFITIKDRPKSQAIISKNIDFYQKYE 160
Cdd:CHL00113  80 GQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREE 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 548954688 161 IPNHLTYNSSENKGLVNQILDRESIGLKINELLVVEYYSRQA 202
Cdd:CHL00113 160 LPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-200 2.64e-86

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 253.10  E-value: 2.64e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688   1 MSRYRGPRVKIIRRLG-ALPGLTNKTpqLKSSSI----NQSTSNKKISQYRIRLEEKQKLRFHYGITERQLLNYVRIARK 75
Cdd:PRK05327   1 MARYTGPKCKLSRRLGvDLFKSGKRC--LKRKYPpgqhGQRRRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAAR 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688  76 AKGSTGEVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPHDFITIKDRPKSQAIISKNIDF 155
Cdd:PRK05327  79 RKGNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEALEL 158

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 548954688 156 YQKYEIPNHLTYNSSENKGLVNQILDRESIGLKINELLVVEYYSR 200
Cdd:PRK05327 159 AERRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-200 2.21e-85

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 250.76  E-value: 2.21e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688   1 MSRYRGPRVKIIRRLG-ALPGLTNKtpqlKSSSINQST-------SNKKISQYRIRLEEKQKLRFHYGITERQLLNYVRI 72
Cdd:COG0522    1 MARYTGPKCKLCRREGvKLFLKGER----KCALERRPYppgqhgqRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFEE 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688  73 ARKAKGSTGEVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPHDFITIKDRPKSQAIISKN 152
Cdd:COG0522   77 AARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKEA 156

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 548954688 153 IDFYQKYEIPNHLTYNSSENKGLVNQILDRESIGLKINELLVVEYYSR 200
Cdd:COG0522  157 LESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-200 1.46e-74

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 223.33  E-value: 1.46e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688    3 RYRGPRVKIIRRLGALPGLTNKTPQLKSSSI--NQSTSNKKISQYRIRLEEKQKLRFHYGITERQLLNYVRIARKAKGST 80
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGKSRKLLLKRKYPpgQHGQRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLKGNT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688   81 GEVLLQLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPHDFITIKDRPKSQAIISKNIDFYQKYE 160
Cdd:TIGR01017  81 GENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNGQRN 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 548954688  161 IPNHLTYNSSENKGLVNQILDRESIGLKINELLVVEYYSR 200
Cdd:TIGR01017 161 IPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-89 1.48e-21

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 84.52  E-value: 1.48e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688    3 RYRGPRVKIIRRLGALPGLTNKTPQLKSSSIN---------QSTSNKKISQYRIRLEEKQKLRFHYGITERQLLNYVRIA 73
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRCHRELKVAQNrreypkypgQHGKIRKLSEYLLQLREKQKVRRKYGLLEKQLRKLYDMG 80

                          90
                  ....*....|....*.
gi 548954688   74 RKAKGSTGEVLLQLLE 89
Cdd:pfam00163  81 LKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 90-156 1.80e-18

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 75.75  E-value: 1.80e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 548954688  90 MRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPHDFITIKDRPKSQAIISKNIDFY 156
Cdd:cd00165    1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYEDKKLL 67
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 90-137 6.58e-15

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 65.98  E-value: 6.58e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 548954688   90 MRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPHDFI 137
Cdd:pfam01479   1 RRLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
S4 smart00363
S4 RNA-binding domain;
90-145 2.11e-12

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 59.53  E-value: 2.11e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 548954688    90 MRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSYRCKPHDFITIKDRPKS 145
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
rps4p PRK04051
30S ribosomal protein S4P; Validated
 48-129 1.75e-11

30S ribosomal protein S4P; Validated


Pssm-ID: 179730 [Multi-domain]  Cd Length: 177  Bit Score: 60.27  E-value: 1.75e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 548954688  48 RLEEKQKLRFHYG--------ITERQLLNYVRIARKAKGSTGEV----------------LL---------------QLL 88
Cdd:PRK04051  22 RIAEERELLGKYGlrnkrelwKAQSILRKYRRQARSLLALPPEErakeeeqllgklkrygILkenatlddvlsltveDIL 101

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 548954688  89 EMRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSY 129
Cdd:PRK04051 102 ERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSY 142
uS4_arch TIGR01018
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ...
 88-129 7.86e-10

ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273397 [Multi-domain]  Cd Length: 162  Bit Score: 55.51  E-value: 7.86e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 548954688   88 LEMRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSY 129
Cdd:TIGR01018 102 LERRLQTQVYKKGLARTIHQARQLIVHGHIAVNGRVVTSPSY 143
PLN00189 PLN00189
40S ribosomal protein S9; Provisional
 86-129 1.76e-08

40S ribosomal protein S9; Provisional


Pssm-ID: 177783 [Multi-domain]  Cd Length: 194  Bit Score: 52.06  E-value: 1.76e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 548954688  86 QLLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSY 129
Cdd:PLN00189 105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGKQIVNVPSF 148
PTZ00155 PTZ00155
40S ribosomal protein S9; Provisional
 87-129 5.67e-08

40S ribosomal protein S9; Provisional


Pssm-ID: 185484 [Multi-domain]  Cd Length: 181  Bit Score: 50.46  E-value: 5.67e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 548954688  87 LLEMRLDNVIFRLGMASTIPGARQLVNHRHILVNDRIVDIPSY 129
Cdd:PTZ00155 104 LLERRLQTKVFKLGLAKSIHHARVLIRQRHIRVGKQIVDIPSF 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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