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Conserved domains on  [gi|555945776|gb|AGZ19014|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Idiocranium cf. russeli BMNH 2008.409]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009581)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-114 2.53e-55

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 167.79  E-value: 2.53e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   1 MTITALTTTVIITSTLALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMPWANQL 80
Cdd:MTH00136   3 LITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQL 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 555945776  81 ILPLTSLTFATIILILLMLGLIYEWTQGGLEWAE 114
Cdd:MTH00136  83 PSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-114 2.53e-55

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 167.79  E-value: 2.53e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   1 MTITALTTTVIITSTLALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMPWANQL 80
Cdd:MTH00136   3 LITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQL 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 555945776  81 ILPLTSLTFATIILILLMLGLIYEWTQGGLEWAE 114
Cdd:MTH00136  83 PSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-111 2.21e-26

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 93.64  E-value: 2.21e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   18 LISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLpmPWANQL-ILPLTSLTFATIILIL 96
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLF--PWAVSFrELGWFGFVEMLIFIAI 79

                          90
                  ....*....|....*
gi 555945776   97 LMLGLIYEWTQGGLE 111
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 10-112 5.06e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 80.55  E-value: 5.06e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776  10 VIITSTLALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLpmPWANQLI-LPLTSLT 88
Cdd:COG0838   16 LGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLF--PWAVVFReLGWFGLI 93

                         90       100
                 ....*....|....*....|....
gi 555945776  89 FATIILILLMLGLIYEWTQGGLEW 112
Cdd:COG0838   94 EMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-114 2.53e-55

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 167.79  E-value: 2.53e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   1 MTITALTTTVIITSTLALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMPWANQL 80
Cdd:MTH00136   3 LITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQL 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 555945776  81 ILPLTSLTFATIILILLMLGLIYEWTQGGLEWAE 114
Cdd:MTH00136  83 PSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-114 6.67e-53

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 161.70  E-value: 6.67e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   1 MTITALTTTVIITSTLALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMPWANQL 80
Cdd:MTH00069   1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQL 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 555945776  81 ILPLTSLTFATIILILLMLGLIYEWTQGGLEWAE 114
Cdd:MTH00069  81 NTPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-113 2.70e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 142.33  E-value: 2.70e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   1 MTITALTTTVIITSTLALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMPWANQL 80
Cdd:MTH00113   2 NLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINL 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 555945776  81 ILPLTSLTFATIILILLMLGLIYEWTQGGLEWA 113
Cdd:MTH00113  82 TTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 3-114 9.29e-44

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 138.53  E-value: 9.29e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   3 ITALTTTVIITSTLALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMPWANQLIL 82
Cdd:MTH00106   4 MLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNN 83

                         90       100       110
                 ....*....|....*....|....*....|..
gi 555945776  83 PLTSLTFATIILILLMLGLIYEWTQGGLEWAE 114
Cdd:MTH00106  84 LNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-114 1.82e-38

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 125.09  E-value: 1.82e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   1 MTITALTTTVIITSTLALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMPWANQL 80
Cdd:MTH00042   3 NLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLI 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 555945776  81 ILPLTSLTFATIILILLMLGLIYEWTQGGLEWAE 114
Cdd:MTH00042  83 TNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 9-112 1.77e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 120.00  E-value: 1.77e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   9 TVIITSTLALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMPWANQLILPltSLT 88
Cdd:MTH00203  11 ALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSL--SLL 88

                         90       100
                 ....*....|....*....|....
gi 555945776  89 FATIILILLMLGLIYEWTQGGLEW 112
Cdd:MTH00203  89 LAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-111 2.21e-26

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 93.64  E-value: 2.21e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   18 LISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLpmPWANQL-ILPLTSLTFATIILIL 96
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLF--PWAVSFrELGWFGFVEMLIFIAI 79

                          90
                  ....*....|....*
gi 555945776   97 LMLGLIYEWTQGGLE 111
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 1-112 5.16e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 93.30  E-value: 5.16e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   1 MTITALTTTVIITSTLALISFWL-PAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMPWANQ 79
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLsKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 555945776  80 LILPLTSLTFATIILILLMLGLIYEWTQGGLEW 112
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-114 2.04e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 91.84  E-value: 2.04e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   1 MTITALTTTVIITSTLALISFWL-PAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLP----MP 75
Cdd:MTH00148   3 SILLSLLFALILSPVLLLLGLVLsKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPvlqsLG 82

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 555945776  76 WANQLILPLTSLTFatiiLILLMLGLIYEWTQGGLEWAE 114
Cdd:MTH00148  83 SSFSVWSLTSLFIF----LLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-114 1.84e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 86.97  E-value: 1.84e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   1 MTITALTTTVIITSTLALISFWLPA-MNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMPWANQ 79
Cdd:MTH00202   3 LILFMSILSILISSLLFLVSWMLSFrSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLK 82

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 555945776  80 LILPLTSLTFATIILILLMLGLIYEWTQGGLEWAE 114
Cdd:MTH00202  83 SSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 6-112 2.23e-21

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 81.65  E-value: 2.23e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   6 LTTTVIITSTLALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMPWANQLILPLT 85
Cdd:MTH00018   7 LIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFG 86

                         90       100
                 ....*....|....*....|....*..
gi 555945776  86 SLTFAtIILILLMLGLIYEWTQGGLEW 112
Cdd:MTH00018  87 FWTMV-GFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 9-112 2.56e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 81.68  E-value: 2.56e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   9 TVIITSTLALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMPWANQLILPLTSLT 88
Cdd:MTH00055  15 SIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWV 94

                         90       100
                 ....*....|....*....|....
gi 555945776  89 FaTIILILLMLGLIYEWTQGGLEW 112
Cdd:MTH00055  95 M-YLFLIILTIGLIYEWVKGGLEW 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 10-112 5.06e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 80.55  E-value: 5.06e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776  10 VIITSTLALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLpmPWANQLI-LPLTSLT 88
Cdd:COG0838   16 LGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLF--PWAVVFReLGWFGLI 93

                         90       100
                 ....*....|....*....|....
gi 555945776  89 FATIILILLMLGLIYEWTQGGLEW 112
Cdd:COG0838   94 EMLVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 16-113 1.38e-20

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 79.91  E-value: 1.38e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776  16 LALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLpmPWANQLI-LPLTSLTFATIIL 94
Cdd:PRK06602  25 LLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLF--PWAVSFReIGWLGFVEAMIFI 102

                         90
                 ....*....|....*....
gi 555945776  95 ILLMLGLIYEWTQGGLEWA 113
Cdd:PRK06602 103 LVLLVGLVYLWRKGALDWE 121
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 29-113 2.79e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 73.74  E-value: 2.79e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776  29 DTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMPWANQLILPLTSLTFATIILILLMLGLIYEWTQG 108
Cdd:MTH00012  32 DREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREG 111


                 ....*
gi 555945776 109 GLEWA 113
Cdd:MTH00012 112 SLDWS 116
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 10-112 5.29e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 68.04  E-value: 5.29e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776  10 VIITSTLALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMPWA-NQliLPLTSLT 88
Cdd:MTH00030  21 LLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVfNQ--LNLFSFW 98

                         90       100
                 ....*....|....*....|....
gi 555945776  89 FATIILILLMLGLIYEWTQGGLEW 112
Cdd:MTH00030  99 IVYTFLIVLAIGLAYEWIKGGLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 32-112 1.79e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 53.91  E-value: 1.79e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776  32 KLSPYECGFDPLGSARLP--FSIRFFLIAILFLLFDLEIALLLPmpWANQL-ILPLTSLTFATIILILLMLGLIYEWTQG 108
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFdALGVFGLVEMALFMLTVFVAYAYVWRRG 114


                 ....
gi 555945776 109 GLEW 112
Cdd:PRK07928 115 GLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 18-112 1.33e-09

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 51.53  E-value: 1.33e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776  18 LISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLlpMPWANQL-ILPLTSLTFATIILIL 96
Cdd:CHL00022  26 LISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFdVLGVSAFIEALIFVLI 103

                         90
                 ....*....|....*.
gi 555945776  97 LMLGLIYEWTQGGLEW 112
Cdd:CHL00022 104 LIVGLVYAWRKGALEW 119
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 9-72 4.73e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 47.20  E-value: 4.73e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 555945776   9 TVIITSTLALISFWLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLL 72
Cdd:MTH00092  11 TLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
1-112 2.60e-07

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 45.81  E-value: 2.60e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776   1 MTITALTTTVIITStlaLISFWLPAMNPDTEKLSPYECGFDPLGSARlPFSIRFFLIAILFLLFDLEIALLLpmPWA-NQ 79
Cdd:PRK08489  19 LTFVAFFLTTRLAR---FISRKLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMF--PWAvDF 92

                         90       100       110
                 ....*....|....*....|....*....|...
gi 555945776  80 LILPLTSLTFATIILILLMLGLIYEWTQGGLEW 112
Cdd:PRK08489  93 KLLGLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
22-112 7.59e-07

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 44.35  E-value: 7.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 555945776  22 WLPAMNPDTEKLSPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLlpMPWANQL-ILPLTSLTFATIILILLMLG 100
Cdd:PRK07756  32 MLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFL--YPWAVAYdKLGLFALIEMLIFVVMLLVG 109

                         90
                 ....*....|..
gi 555945776 101 LIYEWTQGGLEW 112
Cdd:PRK07756 110 LAYAWKKKVLQW 121
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 34-75 1.54e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 43.35  E-value: 1.54e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 555945776  34 SPYECGFDPLGSARLPFSIRFFLIAILFLLFDLEIALLLPMP 75
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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