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Conserved domains on  [gi|56548683|ref|YP_161213|]
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ATP synthase F0 subunit 6 (mitochondrion) [Pseudocheirus peregrinus]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009564)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 1.13e-136

ATP synthase F0 subunit 6; Validated


:

Pssm-ID: 177163  Cd Length: 226  Bit Score: 382.38  E-value: 1.13e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    1 MNENLFAPFITPTIMGITTLPIIMLFPCLILSTPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFIA 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   81 STNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56548683  161 TANITAGHLLIHLIGSATLALSSISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 1.13e-136

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 382.38  E-value: 1.13e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    1 MNENLFAPFITPTIMGITTLPIIMLFPCLILSTPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFIA 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   81 STNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56548683  161 TANITAGHLLIHLIGSATLALSSISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 13-225 1.39e-55

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 176.63  E-value: 1.39e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    13 TIMGITTLPIIMLFPCLIL----STPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFIASTNLLGLL 88
Cdd:TIGR01131  11 TLFSLTLLSLILLLSLLIFlissSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLI 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    89 PYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAGH 168
Cdd:TIGR01131  91 PYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGH 170

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 56548683   169 LLIHLIGSATLALSSISMAvsSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHDN 225
Cdd:TIGR01131 171 LLLTLLSGLLFSLMSSAIF--ALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 65-222 8.61e-45

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 146.78  E-value: 8.61e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683  65 GRSWTLMLISLILFIASTNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIII 144
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 56548683 145 ETISLFIQPLALAVRLTANITAGHLLIHLIGSATLALSSIsmaVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYL 222
Cdd:cd00310  81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS---VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP-synt_A pfam00119
ATP synthase A chain;
13-223 6.21e-42

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 141.47  E-value: 6.21e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    13 TIMGITTLPIIMLFPCLILSTPKRWLPNRIQTLQIWLIRLITKQMM-TMHNKQGRSWTLMLISLILFIASTNLLGLL--- 88
Cdd:pfam00119   1 LLMSLIVALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKdNIGKKKGRKFFPLLLTLFFFILVSNLLGLIpks 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    89 PYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNK-PKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAG 167
Cdd:pfam00119  81 PGGFTVTADINVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAG 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 56548683   168 HLLIHLIGSATLALSSISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLH 223
Cdd:pfam00119 161 HLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 22-224 1.29e-28

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 107.08  E-value: 1.29e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683  22 IIMLFPCLILSTPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFIASTNLLGLLPYSFTPTTQLSMN 101
Cdd:COG0356  11 LLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVT 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683 102 IGMAIPLWMGTVVMGFRNK-PKASLAHFLPQGTPtPLIPMLIIIETISLFIQPLALAVRLTANITAGHLLIHLIGSATla 180
Cdd:COG0356  91 LALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGLA-- 167

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 56548683 181 lssISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHD 224
Cdd:COG0356 168 ---PFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 1.13e-136

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 382.38  E-value: 1.13e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    1 MNENLFAPFITPTIMGITTLPIIMLFPCLILSTPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFIA 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   81 STNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56548683  161 TANITAGHLLIHLIGSATLALSSISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-226 3.32e-95

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 277.48  E-value: 3.32e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    1 MNENLFAPFITPTIMGITTLPIIMLFPCLILSTPK-RWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFI 79
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKnRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   80 ASTNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVR 159
Cdd:MTH00120  81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56548683  160 LTANITAGHLLIHLIGSATLALSSISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00120 161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-225 2.52e-91

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 267.60  E-value: 2.52e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    1 MNENLFAPFITPTIMGITTLPIIMLFPCLILSTP-KRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFI 79
Cdd:MTH00073   1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTPtNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   80 ASTNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVR 159
Cdd:MTH00073  81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56548683  160 LTANITAGHLLIHLIGSATLALSSISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHDN 225
Cdd:MTH00073 161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-225 7.37e-90

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 264.04  E-value: 7.37e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    1 MNENLFAPFITPTIMGITTLPIIMLFPCLILSTP-KRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFI 79
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPtSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   80 ASTNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVR 159
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56548683  160 LTANITAGHLLIHLIGSATLALSSISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHDN 225
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-225 1.17e-75

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 227.91  E-value: 1.17e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    1 MNENLFAPFITPTIMGITTLPIIMLFPCLILSTP-KRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFI 79
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLtNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   80 ASTNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVR 159
Cdd:MTH00179  81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56548683  160 LTANITAGHLLIHLIGSATLALSSISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHDN 225
Cdd:MTH00179 161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 13-225 1.39e-55

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 176.63  E-value: 1.39e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    13 TIMGITTLPIIMLFPCLIL----STPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFIASTNLLGLL 88
Cdd:TIGR01131  11 TLFSLTLLSLILLLSLLIFlissSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLI 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    89 PYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAGH 168
Cdd:TIGR01131  91 PYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGH 170

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 56548683   169 LLIHLIGSATLALSSISMAvsSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHDN 225
Cdd:TIGR01131 171 LLLTLLSGLLFSLMSSAIF--ALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 1-225 1.92e-55

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 176.32  E-value: 1.92e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    1 MNENLFAPFITPTI--MGITTLPIIMLFPCLILSTPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILF 78
Cdd:MTH00035   3 INNSIFGQFSPDTIlfIPLTLLSSVIALSWLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   79 IASTNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAV 158
Cdd:MTH00035  83 ILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGL 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56548683  159 RLTANITAGHLLIHLIGSATLALSSiSMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHDN 225
Cdd:MTH00035 163 RLAANLTAGHLLIFLLSTAIWELSN-SPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQN 228
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-221 2.28e-51

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 165.73  E-value: 2.28e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    1 MNENLFAPFITPTIMGITTLPIIMLFPCLILSTPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFIA 80
Cdd:MTH00157   1 MMTNLFSIFDPSTSFNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   81 STNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRL 160
Cdd:MTH00157  81 FNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 56548683  161 TANITAGHLLIHLIGSATLALSSISMavsSITFMILFLLTILELAVAMIQAYVFTLLVSLY 221
Cdd:MTH00157 161 AANMIAGHLLLTLLGNTGPSLSSMIL---SILILIQILLLILESAVAIIQSYVFSVLSTLY 218
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 65-222 8.61e-45

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 146.78  E-value: 8.61e-45
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683  65 GRSWTLMLISLILFIASTNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIII 144
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 56548683 145 ETISLFIQPLALAVRLTANITAGHLLIHLIGSATLALSSIsmaVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYL 222
Cdd:cd00310  81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS---VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 25-224 5.12e-42

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 142.31  E-value: 5.12e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   25 LFPCLILSTPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFIASTNLLGLLPYSFTPTTQLSMNIGM 104
Cdd:MTH00173  28 LMSLFFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLISLNLSGLLPFVFSVTSHLAFTFSL 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683  105 AIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAGHLLIHLIGSATLALSSI 184
Cdd:MTH00173 108 ALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLANISAGHIVLTLIGNYLSSSLFS 187

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 56548683  185 SMAVSS-ITFMILFLLTILELAVAMIQAYVFTLLVSLYLHD 224
Cdd:MTH00173 188 SSVVSLlLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP-synt_A pfam00119
ATP synthase A chain;
13-223 6.21e-42

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 141.47  E-value: 6.21e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    13 TIMGITTLPIIMLFPCLILSTPKRWLPNRIQTLQIWLIRLITKQMM-TMHNKQGRSWTLMLISLILFIASTNLLGLL--- 88
Cdd:pfam00119   1 LLMSLIVALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKdNIGKKKGRKFFPLLLTLFFFILVSNLLGLIpks 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    89 PYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNK-PKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAG 167
Cdd:pfam00119  81 PGGFTVTADINVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAG 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 56548683   168 HLLIHLIGSATLALSSISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLH 223
Cdd:pfam00119 161 HLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-226 3.35e-40

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 137.47  E-value: 3.35e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    1 MNENLFAPFITPTIM---GITTLPIIMLFPCLILSTPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLIL 77
Cdd:MTH00176   1 MLVDLFSSFDPPNKNifsMISLSWITLLLFLLLMPSSVWFCPSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   78 FIASTNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALA 157
Cdd:MTH00176  81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 56548683  158 VRLTANITAGHLLIHLIGSATLALSSISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00176 161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-224 4.93e-34

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 121.69  E-value: 4.93e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    1 MNENLFAPFITPTIMGITTLPIIMLFP---CLILSTPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLIL 77
Cdd:MTH00172   1 MSSSYFDQFNIVWLIGLTNSSIMMILViivVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   78 FIASTNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALA 157
Cdd:MTH00172  81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56548683  158 VRLTANITAGHLLIHLIGSATLALSSISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHD 224
Cdd:MTH00172 161 VRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLAD 227
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 11-226 2.69e-33

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 119.84  E-value: 2.69e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   11 TPTIMGITTLPIImlfpcLILSTPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFIASTNLLGLLPY 90
Cdd:MTH00005  21 SSTAFWAFNFSII-----LLLSSSFWITPNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMNLSGLLPY 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   91 SFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAGHLL 170
Cdd:MTH00005  96 VFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIV 175

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 56548683  171 IHLIG--SATLALSSISMAVSSITFMILFLLtiLELAVAMIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00005 176 LSLIGiyAASALFSSISSTILLILTQMGYIL--FEVGICLIQAYIFCLLLSLYSDDHP 231
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 10-224 6.68e-31

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 113.95  E-value: 6.68e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   10 ITPTIMGITTLPIIMLFpcLILSTPKRWLPNRIQTLqIWLIRLITKQMMTMH-NKQGRSWTLMLISLILFIASTNLLGLL 88
Cdd:MTH00175  26 VTFTNSSMMMVLAVIIF--WLLLKGDKLIPNRWQSI-MELIYLNIRSVVHDNlGKSGQKYFPFILSLFLFIAILNILGLF 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   89 PYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPLALAVRLTANITAGH 168
Cdd:MTH00175 103 PYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANISAGH 182

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 56548683  169 LLIHLI-GSATLALSSISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHD 224
Cdd:MTH00175 183 LLFAILsGFAFNMLSNGLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLGD 239
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 22-224 1.29e-28

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 107.08  E-value: 1.29e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683  22 IIMLFPCLILSTPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFIASTNLLGLLPYSFTPTTQLSMN 101
Cdd:COG0356  11 LLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVT 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683 102 IGMAIPLWMGTVVMGFRNK-PKASLAHFLPQGTPtPLIPMLIIIETISLFIQPLALAVRLTANITAGHLLIHLIGSATla 180
Cdd:COG0356  91 LALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGLA-- 167

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 56548683 181 lssISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHD 224
Cdd:COG0356 168 ---PFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYISL 208
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 10-224 1.88e-25

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 99.10  E-value: 1.88e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   10 ITPTIMGITTLPIIMLFPCLILSTPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFIASTNLLGLLP 89
Cdd:PRK05815  14 FDSLLLSVLLGVLILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGKGKKFAPLAFTLFLFILLMNLLGLIP 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   90 -YSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKpkaSLAHFLPQGTPTPlIPMLIIIETISLFIQPLALAVRLTANITAGH 168
Cdd:PRK05815  94 yLLFPPTADINVTLALALIVFVLVIYYGIKKK---GLGGYLKEFYLQP-HPLLLPIEIISEFSRPISLSLRLFGNMLAGE 169

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 56548683  169 LLIHLIGSatlaLSSISMAVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYLHD 224
Cdd:PRK05815 170 LILALIAL----LGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISM 221
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 64-224 3.04e-23

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 93.85  E-value: 3.04e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   64 QGRSWTLMLISLILFIASTNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLII 143
Cdd:MTH00174  86 KGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTI 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683  144 IETISLFIQPLALAVRLTANITAGHLLIHLIGSATLALSSISMAVSS-ITFMILFLLTILELAVAMIQAYVFTLLVSLYL 222
Cdd:MTH00174 166 IETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIGSfVPFAILIFVTILEMAVAIIQAYVFTLLTIVYL 245


                 ..
gi 56548683  223 HD 224
Cdd:MTH00174 246 RD 247
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 72-222 3.49e-22

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 92.50  E-value: 3.49e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   72 LISLILFIASTNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFR-NKPKASLAHfLPQGTPTPLIPMLIIIETISLF 150
Cdd:PRK13419 174 LLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKaHGIKGYLAH-LTGGTHWSLWIIMIPIEFIGLF 252

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 56548683  151 IQPLALAVRLTANITAGHLLI-HLIGSATLALSSISMAVSSITFMILFLLtiLELAVAMIQAYVFTLLVSLYL 222
Cdd:PRK13419 253 TKPFALTVRLFANMTAGHIVIlSLIFISFILKSYIVAVAVSVPFAIFIYL--LELFVAFLQAYIFTMLSALFI 323
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 74-222 9.46e-14

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 67.31  E-value: 9.46e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   74 SLILFIASTNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASlaHFLPQGTPTPLIPM-LIIIETISLFIQ 152
Cdd:MTH00087  57 FTFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSEKFS--VYLSKGSDSFLKTFsMLFVEIVSELSR 134

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683  153 PLALAVRLTANITAGHLLIHLIGSatlalssismaVSSITFMILFLLTILELAVAMIQAYVFTLLVSLYL 222
Cdd:MTH00087 135 PLALTLRLTVNLMVGHLISSLLNF-----------LGEKYVWLSILAIMMECFVAFIQSYIFSRLIYLYL 193
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 93-222 2.69e-09

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 56.05  E-value: 2.69e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   93 TPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETI-SLFIQPLALAVRLTANITAGHLLI 171
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHVII 296

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 56548683  172 -HLIGSATLALSSISMAVSSITFMILFlltILELAVAMIQAYVFTLLVSLYL 222
Cdd:PRK13417 297 lALMGFIFQFQSWGIVPVSVIGSGLIY---VLEIFVAFLQAYIFVLLTSLFV 345
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 7-217 2.39e-05

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 43.92  E-value: 2.39e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683    7 APFITPTIMGITTLPI---------IMLFPCL--ILSTPKRWL-PNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLIS 74
Cdd:PRK13421   4 SPLSTVPLFSLGPVPIsapvvvtwaIMAVLAAgsALATRRLSLaPGRLQSVLELVVTTIDAQIRDTMQTDPAPYRALIGT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   75 LILFIASTNLLGLLPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNK-PKASLAHFLpqgTPTPLIPMLIIIETISlfiQP 153
Cdd:PRK13421  84 LFLFVLVANWSSLVPGVEPPTAHLETDAALALIVFLATIYYGVRARgVRGYLATFA---EPTWVMIPLNLVEQLT---RT 157

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56548683  154 LALAVRLTANITAGHLLIHLIgsatLALSSIsmaVSSITFMILFLLTilelavAMIQAYVFTLL 217
Cdd:PRK13421 158 FSLIVRLFGNVMSGVFVIGIV----LSLAGL---LVPIPLMALDLLT------GAVQAYIFAVL 208
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 71-215 3.36e-05

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 42.95  E-value: 3.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   71 MLISLILFIASTNLLGL-LPYSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKPKASLAHFLPQGTPTPLIPMLIIIETISL 149
Cdd:MTH00050  24 YYYSVVLFIVLFLFLLYrLPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPVGTPLYICPFVCIAETISY 103

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56548683  150 FIQPLALAVRLTANITAGHLlihligsATLALSSISMaVSSITFMILFLLTILELAVAMIQAYVFT 215
Cdd:MTH00050 104 IIRPVVLILRPFINISLGCF-------GGVALGNLCF-ISYWWFLVLFFLFFYEVFVALVHWFIVS 161
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 10-222 3.62e-04

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 40.50  E-value: 3.62e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   10 ITPTIMGITTLPIIMLFPCLILSTPKRWLPNRIQTLQIWLIRLITKQMMTMHNKQGRSWTLMLISLILFIASTNLLGLLP 89
Cdd:PRK13420  16 ITESVLTTWGIMIVLVLASWLTTRRLSLDPGRFQVALEGVVSTIEDAIKEVLPRHARLVLPFVGTLWIFILVANLIGLIP 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548683   90 YSFTPTTQLSMNIGMAIPLWMGTVVMGFRNKP-KASLAHFLpqgTPTPLipmLIIIETISLFIQPLALAVRLTANITAGH 168
Cdd:PRK13420  96 GFHSPTADLSVTAALALLVFFSVHWFGIRAEGlREYLKHYL---SPSPF---LLPFHLISEITRTLALAVRLFGNIMSLE 169

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 56548683  169 LLIHLIGSATLALSSISmavssitfmiLFLLTILElavAMIQAYVFTLLVSLYL 222
Cdd:PRK13420 170 LAALLVLLVAGFLVPVP----------ILMLHIIE---ALVQAYIFGMLALIYI 210
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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