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Conserved domains on  [gi|56548753|ref|YP_161187|]
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ATP synthase F0 subunit 6 (mitochondrion) [Sminthopsis douglasi]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009564)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 2.31e-132

ATP synthase F0 subunit 6; Validated


:

Pssm-ID: 177163  Cd Length: 226  Bit Score: 371.59  E-value: 2.31e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    1 MNENLFAPFICPSIMDISTLPIIILFPCLIFSAPKRWLPNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFIA 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   81 TTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56548753  161 TANITAGHLLIHLISSAALALLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLHDNT 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 2.31e-132

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 371.59  E-value: 2.31e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    1 MNENLFAPFICPSIMDISTLPIIILFPCLIFSAPKRWLPNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFIA 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   81 TTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56548753  161 TANITAGHLLIHLISSAALALLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLHDNT 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 13-225 1.93e-54

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 173.93  E-value: 1.93e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    13 SIMDISTLPIIILFPCLIF----SAPKRWLPNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFIATTNLLGLL 88
Cdd:TIGR01131  11 TLFSLTLLSLILLLSLLIFlissSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLI 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    89 PYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVRLTANITAGH 168
Cdd:TIGR01131  91 PYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGH 170

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 56548753   169 LLIHLISSAALALLSISITLssITFIILFLLTILEFAVALIQAYVFTLLVSLYLHDN 225
Cdd:TIGR01131 171 LLLTLLSGLLFSLMSSAIFA--LLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 65-222 9.57e-44

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 144.08  E-value: 9.57e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753  65 GRTWTLMLMSLILFIATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIII 144
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 56548753 145 ETISLLIQPVALAVRLTANITAGHLLIHLISSAALALLSIsitLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYL 222
Cdd:cd00310  81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS---VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP-synt_A pfam00119
ATP synthase A chain;
22-223 2.16e-42

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 142.63  E-value: 2.16e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    22 IIILFPCLIFSAPKRWLPNRMQILQIWLIRLITKQMM-TMHNKLGRTWTLMLMSLILFIATTNLLGLL---PYSFTPTTQ 97
Cdd:pfam00119  10 ILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKdNIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGFTVTAD 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    98 LSMNLGMAIPLWMGTVIMGFQNK-PKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVRLTANITAGHLLIHLISS 176
Cdd:pfam00119  90 INVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAG 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 56548753   177 AALALLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLH 223
Cdd:pfam00119 170 LIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 39-224 8.82e-29

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 107.47  E-value: 8.82e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753  39 PNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFIATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQ 118
Cdd:COG0356  28 PGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIK 107

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753 119 NK-PKASLAHFLPQGTPtPLIPMLIIIETISLLIQPVALAVRLTANITAGHLLIHLIssaalALLSISITLSSITFIILF 197
Cdd:COG0356 108 KKgLGGYLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLL-----AGLAPFLLLGVLSLLLPV 181

                       170       180
                ....*....|....*....|....*..
gi 56548753 198 LLTILEFAVALIQAYVFTLLVSLYLHD 224
Cdd:COG0356 182 AWTAFELLVGFLQAYIFTMLTAVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 2.31e-132

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 371.59  E-value: 2.31e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    1 MNENLFAPFICPSIMDISTLPIIILFPCLIFSAPKRWLPNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFIA 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   81 TTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56548753  161 TANITAGHLLIHLISSAALALLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLHDNT 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-226 5.34e-94

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 274.39  E-value: 5.34e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    1 MNENLFAPFICPSIMDISTLPIIILFPCLIFSAPK-RWLPNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFI 79
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKnRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   80 ATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVR 159
Cdd:MTH00120  81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56548753  160 LTANITAGHLLIHLISSAALALLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLHDNT 226
Cdd:MTH00120 161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-225 1.24e-85

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 253.26  E-value: 1.24e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    1 MNENLFAPFICPSIMDISTLPIIILFPCLIFSAP-KRWLPNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFI 79
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPtSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   80 ATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVR 159
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56548753  160 LTANITAGHLLIHLISSAALALLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLHDN 225
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-226 2.00e-85

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 252.58  E-value: 2.00e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    1 MNENLFAPFICPSIMDISTLPIIILFPCLIFSAP-KRWLPNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFI 79
Cdd:MTH00073   1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTPtNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   80 ATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVR 159
Cdd:MTH00073  81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56548753  160 LTANITAGHLLIHLISSAALALLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLHDNT 226
Cdd:MTH00073 161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-226 3.66e-74

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 224.06  E-value: 3.66e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    1 MNENLFAPFICPSIMDISTLPIIILFPCLIFSAP-KRWLPNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFI 79
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLtNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   80 ATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVR 159
Cdd:MTH00179  81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56548753  160 LTANITAGHLLIHLISSAALALLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLHDNT 226
Cdd:MTH00179 161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENL 227
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 13-225 1.93e-54

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 173.93  E-value: 1.93e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    13 SIMDISTLPIIILFPCLIF----SAPKRWLPNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFIATTNLLGLL 88
Cdd:TIGR01131  11 TLFSLTLLSLILLLSLLIFlissSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLI 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    89 PYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVRLTANITAGH 168
Cdd:TIGR01131  91 PYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGH 170

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 56548753   169 LLIHLISSAALALLSISITLssITFIILFLLTILEFAVALIQAYVFTLLVSLYLHDN 225
Cdd:TIGR01131 171 LLLTLLSGLLFSLMSSAIFA--LLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 1-225 4.32e-51

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 165.53  E-value: 4.32e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    1 MNENLFAPFICPSI--MDISTLPIIILFPCLIFSAPKRWLPNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILF 78
Cdd:MTH00035   3 INNSIFGQFSPDTIlfIPLTLLSSVIALSWLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   79 IATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAV 158
Cdd:MTH00035  83 ILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGL 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 56548753  159 RLTANITAGHLLIHLISSaALALLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLHDN 225
Cdd:MTH00035 163 RLAANLTAGHLLIFLLST-AIWELSNSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQN 228
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-221 4.92e-51

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 164.96  E-value: 4.92e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    1 MNENLFAPFIcPSIMDISTLPIIILFPCLIFSAPKRWL-PNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFI 79
Cdd:MTH00157   1 MMTNLFSIFD-PSTSFNLSLNWLSTFLGLLFIPSSFWLiPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   80 ATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVR 159
Cdd:MTH00157  80 LFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 56548753  160 LTANITAGHLLIHLISSaalALLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLY 221
Cdd:MTH00157 160 LAANMIAGHLLLTLLGN---TGPSLSSMILSILILIQILLLILESAVAIIQSYVFSVLSTLY 218
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 65-222 9.57e-44

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 144.08  E-value: 9.57e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753  65 GRTWTLMLMSLILFIATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIII 144
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 56548753 145 ETISLLIQPVALAVRLTANITAGHLLIHLISSAALALLSIsitLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYL 222
Cdd:cd00310  81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS---VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 25-224 1.92e-42

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 143.08  E-value: 1.92e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   25 LFPCLIFSAPKRWLPNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFIATTNLLGLLPYSFTPTTQLSMNLGM 104
Cdd:MTH00173  28 LMSLFFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLISLNLSGLLPFVFSVTSHLAFTFSL 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753  105 AIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVRLTANITAGHLLIHLISSAALALL-S 183
Cdd:MTH00173 108 ALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLANISAGHIVLTLIGNYLSSSLfS 187

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 56548753  184 ISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLHD 224
Cdd:MTH00173 188 SSVVSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP-synt_A pfam00119
ATP synthase A chain;
22-223 2.16e-42

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 142.63  E-value: 2.16e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    22 IIILFPCLIFSAPKRWLPNRMQILQIWLIRLITKQMM-TMHNKLGRTWTLMLMSLILFIATTNLLGLL---PYSFTPTTQ 97
Cdd:pfam00119  10 ILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKdNIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGFTVTAD 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    98 LSMNLGMAIPLWMGTVIMGFQNK-PKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVRLTANITAGHLLIHLISS 176
Cdd:pfam00119  90 INVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAG 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 56548753   177 AALALLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLH 223
Cdd:pfam00119 170 LIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 6-226 6.59e-40

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 136.70  E-value: 6.59e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753    6 FAPFICPSIMDISTLPIIILFPCLIFSAPKRWLPNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFIATTNLL 85
Cdd:MTH00176   9 FDPPNKNIFSMISLSWITLLLFLLLMPSSVWFCPSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFILVMSLNLS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   86 GLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVRLTANIT 165
Cdd:MTH00176  89 GLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLAVRLAANLS 168

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 56548753  166 AGHLLIHLISSAALALLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLHDNT 226
Cdd:MTH00176 169 AGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 18-224 2.78e-33

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 120.11  E-value: 2.78e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   18 STLPIIILFPCLIFSAPKRWLPNRMQILqIWLIRLITKQMMTMH-NKLGRTWTLMLMSLILFIATTNLLGLLPYSFTPTT 96
Cdd:MTH00175  32 SMMMVLAVIIFWLLLKGDKLIPNRWQSI-MELIYLNIRSVVHDNlGKSGQKYFPFILSLFLFIAILNILGLFPYVFTPTA 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   97 QLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVRLTANITAGHLLIHLISS 176
Cdd:MTH00175 111 HIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANISAGHLLFAILSG 190

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 56548753  177 AALALLSIS-ITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLHD 224
Cdd:MTH00175 191 FAFNMLSNGlIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLGD 239
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 38-226 5.04e-33

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 119.07  E-value: 5.04e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   38 LPNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFIATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGF 117
Cdd:MTH00005  43 TPNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMNLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSV 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753  118 QNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVRLTANITAGHLLIHLISSAALALLSISITLSSITFIILF 197
Cdd:MTH00005 123 TFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIVLSLIGIYAASALFSSISSTILLILTQM 202

                        170       180
                 ....*....|....*....|....*....
gi 56548753  198 LLTILEFAVALIQAYVFTLLVSLYLHDNT 226
Cdd:MTH00005 203 GYILFEVGICLIQAYIFCLLLSLYSDDHP 231
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 13-224 1.34e-32

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 117.83  E-value: 1.34e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   13 SIMDISTLPIIILFPCLIFSAPKRWlpnrMQILQIWLIRLITKQMMTMHNKlGRTWTLMLMSLILFIATTNLLGLLPYSF 92
Cdd:MTH00172  21 SIMMILVIIVVLLLFKGIKLIPKRW----QSIIEIIYNHFHGVVKDNLGNE-GLKYFPFIISLFFFIVFLNLLGLFPYVF 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   93 TPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISLLIQPVALAVRLTANITAGHLLIH 172
Cdd:MTH00172  96 TPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLGVRLAANLSAGHLLFA 175

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 56548753  173 LISSAALALLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLHD 224
Cdd:MTH00172 176 ILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLAD 227
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 39-224 8.82e-29

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 107.47  E-value: 8.82e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753  39 PNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFIATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQ 118
Cdd:COG0356  28 PGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIK 107

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753 119 NK-PKASLAHFLPQGTPtPLIPMLIIIETISLLIQPVALAVRLTANITAGHLLIHLIssaalALLSISITLSSITFIILF 197
Cdd:COG0356 108 KKgLGGYLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLL-----AGLAPFLLLGVLSLLLPV 181

                       170       180
                ....*....|....*....|....*..
gi 56548753 198 LLTILEFAVALIQAYVFTLLVSLYLHD 224
Cdd:COG0356 182 AWTAFELLVGFLQAYIFTMLTAVYISL 208
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 22-224 1.00e-24

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 97.17  E-value: 1.00e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   22 IIILFPCLIFSAPKRWLPNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFIATTNLLGLLP-YSFTPTTQLSM 100
Cdd:PRK05815  26 LILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGKGKKFAPLAFTLFLFILLMNLLGLIPyLLFPPTADINV 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753  101 NLGMAIPLWMGTVIMGFQNKpkaSLAHFLPQGTPTPlIPMLIIIETISLLIQPVALAVRLTANITAGHLLIHLIssaaLA 180
Cdd:PRK05815 106 TLALALIVFVLVIYYGIKKK---GLGGYLKEFYLQP-HPLLLPIEIISEFSRPISLSLRLFGNMLAGELILALI----AL 177

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 56548753  181 LLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYLHD 224
Cdd:PRK05815 178 LGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISM 221
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 65-224 3.08e-24

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 96.55  E-value: 3.08e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   65 GRTWTLMLMSLILFIATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIII 144
Cdd:MTH00174  87 GGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTII 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753  145 ETISLLIQPVALAVRLTANITAGHLLIHLISSAALALLSISITLSS-ITFIILFLLTILEFAVALIQAYVFTLLVSLYLH 223
Cdd:MTH00174 167 ETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIGSfVPFAILIFVTILEMAVAIIQAYVFTLLTIVYLR 246


                 .
gi 56548753  224 D 224
Cdd:MTH00174 247 D 247
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 72-222 9.43e-20

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 85.95  E-value: 9.43e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   72 LMSLILFIATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQ-NKPKASLAHfLPQGTPTPLIPMLIIIETISLL 150
Cdd:PRK13419 174 LLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKaHGIKGYLAH-LTGGTHWSLWIIMIPIEFIGLF 252

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753  151 IQPVALAVRLTANITAGHLLIhlissaaLALLSISITLS--------SITFIILFLLtiLEFAVALIQAYVFTLLVSLYL 222
Cdd:PRK13419 253 TKPFALTVRLFANMTAGHIVI-------LSLIFISFILKsyivavavSVPFAIFIYL--LELFVAFLQAYIFTMLSALFI 323
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 74-222 3.59e-13

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 65.77  E-value: 3.59e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   74 SLILFIATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASlaHFLPQGTPTPLIPM-LIIIETISLLIQ 152
Cdd:MTH00087  57 FTFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSEKFS--VYLSKGSDSFLKTFsMLFVEIVSELSR 134

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753  153 PVALAVRLTANITAGHLLIHLISSaalallsisitLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYL 222
Cdd:MTH00087 135 PLALTLRLTVNLMVGHLISSLLNF-----------LGEKYVWLSILAIMMECFVAFIQSYIFSRLIYLYL 193
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 93-222 1.96e-09

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 56.44  E-value: 1.96e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   93 TPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETI-SLLIQPVALAVRLTANITAGHLLI 171
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHVII 296

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 56548753  172 hlISSAALALLSISITLSSITFIILFLLTILEFAVALIQAYVFTLLVSLYL 222
Cdd:PRK13417 297 --LALMGFIFQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLFV 345
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 71-215 1.69e-05

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 43.72  E-value: 1.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   71 MLMSLILFIATTNLLGL-LPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQNKPKASLAHFLPQGTPTPLIPMLIIIETISL 149
Cdd:MTH00050  24 YYYSVVLFIVLFLFLLYrLPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPVGTPLYICPFVCIAETISY 103

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56548753  150 LIQPVALAVRLTANITAGHLlihlissAALALLSISItLSSITFIILFLLTILEFAVALIQAYVFT 215
Cdd:MTH00050 104 IIRPVVLILRPFINISLGCF-------GGVALGNLCF-ISYWWFLVLFFLFFYEVFVALVHWFIVS 161
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 39-217 6.01e-05

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 42.76  E-value: 6.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   39 PNRMQILQIWLIRLITKQMMTMHNKLGRTWTLMLMSLILFIATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGFQ 118
Cdd:PRK13421  48 PGRLQSVLELVVTTIDAQIRDTMQTDPAPYRALIGTLFLFVLVANWSSLVPGVEPPTAHLETDAALALIVFLATIYYGVR 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753  119 NK-PKASLAHFLpqgTPTPLIPMLIIIETISlliQPVALAVRLTANITAGHLLIHLIssaalalLSISITLSSITFIILF 197
Cdd:PRK13421 128 ARgVRGYLATFA---EPTWVMIPLNLVEQLT---RTFSLIVRLFGNVMSGVFVIGIV-------LSLAGLLVPIPLMALD 194

                        170       180
                 ....*....|....*....|
gi 56548753  198 LLTilefavALIQAYVFTLL 217
Cdd:PRK13421 195 LLT------GAVQAYIFAVL 208
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 71-222 6.81e-05

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 42.42  E-value: 6.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56548753   71 MLMSLILFIATTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVIMGF-QNKPKASLAHFLpqgTPTPLIPMLIIIETISl 149
Cdd:PRK13420  77 FVGTLWIFILVANLIGLIPGFHSPTADLSVTAALALLVFFSVHWFGIrAEGLREYLKHYL---SPSPFLLPFHLISEIT- 152

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 56548753  150 liQPVALAVRLTANITAGHLlihlissAALALLSISITLSSITFIILFLLTilefavALIQAYVFTLLVSLYL 222
Cdd:PRK13420 153 --RTLALAVRLFGNIMSLEL-------AALLVLLVAGFLVPVPILMLHIIE------ALVQAYIFGMLALIYI 210
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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