|
Name |
Accession |
Description |
Interval |
E-value |
| VacB super family |
cl43181 |
Exoribonuclease R [Transcription]; |
228-721 |
2.60e-96 |
|
Exoribonuclease R [Transcription];
The actual alignment was detected with superfamily member COG0557:
Pssm-ID: 440323 [Multi-domain] Cd Length: 711 Bit Score: 316.66 E-value: 2.60e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 228 PIPQDTRGLSEkslqksAKVVYILEKKHSRAaTGILKLLadknsdlfKKYALFSPSDHRVPR-IYVPLKDCPQdfmtrPK 306
Cdd:COG0557 113 VTKEDRRGRPE------GRVVEILERANTRV-VGRFEKE--------KGFGFVVPDDKRLLQdIFIPPDDLNG-----AK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 307 DfaNTLFICRIIDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFsDFSSEVLECLpQSLPWTIPPDEVGKRRDL 386
Cdd:COG0557 173 D--GDLVVVEITRYPERRGPPEGRVVEVLGSPGDPGAEILIAIRKHGLPH-EFPEEVLAEA-EALPDEVPEADLKGRRDL 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 387 RKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQ---------------- 450
Cdd:COG0557 249 RDLPLVTIDGEDAKDFDDAVSAEKLDNGGWRLGVHIADVSHYVRPGSALDREARKRGTSVYLPDrvipmlperlsnglcs 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 451 --------------------KILEEWFGRTIIRSCTKLSYDHAQSMIENPTEKIPEEElppispehsvEEVHQAVLNLHS 510
Cdd:COG0557 329 lnpgedrlamscemeidakgEVVSYEFYRSVIRSDARLTYEEVQAILDGKDEELREEY----------ADLVPMLEELYE 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 511 IAKQLRRQRFVDGALRLDQLKLAFTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTfpEQALLRR-HPPP 589
Cdd:COG0557 399 LAKILRKAREKRGAIDFDLPETKIILD-EEGKPEDIVPRERNDAHKLIEEFMLLANEAVAEFLEKL--KLPFLYRvHEEP 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 590 QTKMLSDLVEFCDQMGLPM---DVSSAGALNKsLTKTFGDDKYSlarkEVLTNMYSRPMQMALYfcsgmlqDQEQFRHYA 666
Cdd:COG0557 476 DPEKLEALREFLANLGLKLkggDEPTPKDLQK-LLEQVKGRPEE----ELLNTLLLRSMKQAVY-------SPENIGHFG 543
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 568908471 667 LNVPLYTHFTSPIRRFADVIVHRLLAAALG---YSEQPDVEPDTLQKQADHCNDR-RMA 721
Cdd:COG0557 544 LALEAYTHFTSPIRRYPDLLVHRALKAYLEgkrSPGLQEYLEEELEEIAEHCSETeRRA 602
|
|
| Dis3l2_C_term |
pfam17877 |
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. ... |
742-831 |
3.73e-31 |
|
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. Dis3L2 belongs to the RNase II/R 3-5 exonuclease superfamily, which includes the catalytic subunit of the RNA exosome in yeast and in humans.
:
Pssm-ID: 465547 Cd Length: 87 Bit Score: 116.98 E-value: 3.73e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 742 GPLESEAMVMGVLNQAFDVLVLRFGVQKRIYCNALALRSYSFQKVGKkpeLTLVWEPDDLEEEPTQQVITIFSLVDVVLQ 821
Cdd:pfam17877 1 GPLETEAVVLGVLDSSFDVLIPEYGIEKRVYLDQLPLKKFEFDKTGV---LTLYWKKGVPSSAYVPEDERFSSLVVVVLK 77
|
90
....*....|
gi 568908471 822 AEATALKYSA 831
Cdd:pfam17877 78 SDSDPLKLEA 87
|
|
| Rrp44_CSD1 super family |
cl28867 |
Rrp44-like cold shock domain; |
50-250 |
2.47e-10 |
|
Rrp44-like cold shock domain;
The actual alignment was detected with superfamily member pfam17216:
Pssm-ID: 375054 Cd Length: 148 Bit Score: 59.40 E-value: 2.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 50 FETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNGDLVVVKLLPEDQWKPritlsl 129
Cdd:pfam17216 4 FPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKA------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 130 PGVLGLQAVKPESNDKeieatyeadipeegcghhplqqsrkgwsgPDviIEAQfDDSDSEDRHGNTSGLVDGVKKLsist 209
Cdd:pfam17216 78 PSSIVLDSEHFDVNDN-----------------------------PD--IEAG-DDDDNNESSSNTTVISDKQRRL---- 121
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568908471 210 pdrgkedsstpVMKDenTPIPQDTrglseKSLQKSAKVVYI 250
Cdd:pfam17216 122 -----------LAKD--AMIAQRS-----KKIQPTAKVVYI 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| VacB |
COG0557 |
Exoribonuclease R [Transcription]; |
228-721 |
2.60e-96 |
|
Exoribonuclease R [Transcription];
Pssm-ID: 440323 [Multi-domain] Cd Length: 711 Bit Score: 316.66 E-value: 2.60e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 228 PIPQDTRGLSEkslqksAKVVYILEKKHSRAaTGILKLLadknsdlfKKYALFSPSDHRVPR-IYVPLKDCPQdfmtrPK 306
Cdd:COG0557 113 VTKEDRRGRPE------GRVVEILERANTRV-VGRFEKE--------KGFGFVVPDDKRLLQdIFIPPDDLNG-----AK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 307 DfaNTLFICRIIDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFsDFSSEVLECLpQSLPWTIPPDEVGKRRDL 386
Cdd:COG0557 173 D--GDLVVVEITRYPERRGPPEGRVVEVLGSPGDPGAEILIAIRKHGLPH-EFPEEVLAEA-EALPDEVPEADLKGRRDL 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 387 RKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQ---------------- 450
Cdd:COG0557 249 RDLPLVTIDGEDAKDFDDAVSAEKLDNGGWRLGVHIADVSHYVRPGSALDREARKRGTSVYLPDrvipmlperlsnglcs 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 451 --------------------KILEEWFGRTIIRSCTKLSYDHAQSMIENPTEKIPEEElppispehsvEEVHQAVLNLHS 510
Cdd:COG0557 329 lnpgedrlamscemeidakgEVVSYEFYRSVIRSDARLTYEEVQAILDGKDEELREEY----------ADLVPMLEELYE 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 511 IAKQLRRQRFVDGALRLDQLKLAFTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTfpEQALLRR-HPPP 589
Cdd:COG0557 399 LAKILRKAREKRGAIDFDLPETKIILD-EEGKPEDIVPRERNDAHKLIEEFMLLANEAVAEFLEKL--KLPFLYRvHEEP 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 590 QTKMLSDLVEFCDQMGLPM---DVSSAGALNKsLTKTFGDDKYSlarkEVLTNMYSRPMQMALYfcsgmlqDQEQFRHYA 666
Cdd:COG0557 476 DPEKLEALREFLANLGLKLkggDEPTPKDLQK-LLEQVKGRPEE----ELLNTLLLRSMKQAVY-------SPENIGHFG 543
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 568908471 667 LNVPLYTHFTSPIRRFADVIVHRLLAAALG---YSEQPDVEPDTLQKQADHCNDR-RMA 721
Cdd:COG0557 544 LALEAYTHFTSPIRRYPDLLVHRALKAYLEgkrSPGLQEYLEEELEEIAEHCSETeRRA 602
|
|
| RNB |
pfam00773 |
RNB domain; This domain is the catalytic domain of ribonuclease II. |
383-695 |
5.21e-87 |
|
RNB domain; This domain is the catalytic domain of ribonuclease II.
Pssm-ID: 459934 [Multi-domain] Cd Length: 314 Bit Score: 279.17 E-value: 5.21e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 383 RRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQ------------ 450
Cdd:pfam00773 1 RKDLRDLPFITIDPADAKDLDDAISVEKLPNGGYRLGVHIADVSHYVPPGSPLDREARKRGTSVYLPDrvipmlpeklsn 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 451 ------------------------KILEEWFGRTIIRSCTKLSYDHAQSMIENPTEKIPEEELppispehsveevHQAVL 506
Cdd:pfam00773 81 dlcslnpgedrlalsveitidadgEVTSYEIYPSVIRSKARLTYEEVDDLLEGKDAEKDKPDL------------AEDLR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 507 NLHSIAKQLRRQRFVDGALRLDQLKLAFTLDHETglPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIfRTFPEQALLRRH 586
Cdd:pfam00773 149 LLYELAKILRAKRLQRGALDLDTPENKLILDEEG--VIDILIQERTDAHSLIEEFMLLANEAVARHL-QELGIPALYRVH 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 587 PPPQTKMLSDLVEFCDQMGLPMdvssagALNKSLTKTFGDdkyslarKEVLTNMYSRPMQMALYFcsgmlqdQEQFRHYA 666
Cdd:pfam00773 226 PEPDLEKLNSLIKLLQLLPDDK------GLSKSLEKIKDD-------ERLLSILLLRTMPRAEYS-------PEPLGHFG 285
|
330 340
....*....|....*....|....*....
gi 568908471 667 LNVPLYTHFTSPIRRFADVIVHRLLAAAL 695
Cdd:pfam00773 286 LGLDIYTHFTSPIRRYPDLIVHRQLKALL 314
|
|
| RNB |
smart00955 |
This domain is the catalytic domain of ribonuclease II; |
383-696 |
1.46e-78 |
|
This domain is the catalytic domain of ribonuclease II;
Pssm-ID: 214935 [Multi-domain] Cd Length: 286 Bit Score: 255.65 E-value: 1.46e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 383 RRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQK----------- 451
Cdd:smart00955 1 RVDLRDLPLFTIDPEDAKDIDDAVSVEKLDNGGYRLGVHIADVSHYVKPGSALDREARKRGTSVYLPDRvipmlpeelsn 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 452 --------------------------ILEEWFGRTIIRSCTKLSYDHAQSMIENptekipeeelppispehsveevhqav 505
Cdd:smart00955 81 glcslnpgedrlalsvemtldadggeILDYEFYRSVIRSKARLTYEEVDAILEK-------------------------- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 506 lnlhsiakqlrrqrfvdgalrldqlklaFTLDHEtGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTFPeQALLRR 585
Cdd:smart00955 135 ----------------------------IVLDEE-GKIEDIVPRERNDAHSLVEEFMILANEAVARFLAKNGI-PGLYRV 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 586 HPPPQTKMLSD-LVEFCDQMGLPM-DVSSAGALNKSLTKTFGDDKyslarKEVLTNMYSRPMQMALYFCSGmlqdqeqFR 663
Cdd:smart00955 185 HEGPDPEKLAElLKEFLALLGLLLlGGDGPKALAKLLEKIRDSPE-----ERLLELLLLRSMPHAEYSVDN-------SG 252
|
330 340 350
....*....|....*....|....*....|...
gi 568908471 664 HYALNVPLYTHFTSPIRRFADVIVHRLLAAALG 696
Cdd:smart00955 253 HFGLALDAYTHFTSPIRRYPDLIVHRQLKAALR 285
|
|
| RNase_R |
TIGR02063 |
ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. ... |
243-718 |
1.96e-72 |
|
ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA]
Pssm-ID: 273947 [Multi-domain] Cd Length: 709 Bit Score: 251.81 E-value: 1.96e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 243 KSAKVVYILEKKHSRAATGILKLladknsdlfKKYALFSPSDHRVP-RIYVPLKDCpqdfmTRPKDfaNTLFICRIIDWK 321
Cdd:TIGR02063 123 FEARVIKILERANDQIVGTFYIE---------NGIGFVIPDDKRIYlDIFIPPEQI-----LGAEE--GDKVLVEITKYP 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 322 EDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFsDFSSEVLEcLPQSLPWTIPPDEVGKRRDLRKDCIFTIDPSTARD 401
Cdd:TIGR02063 187 DRNRPAIGKVVEILGHADDPGIDILIIIRKHGIPY-EFPEEVLD-EAAKIPEEVPEEEIKGRKDLRDLPFVTIDGEDAKD 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 402 LDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQ------------------------------- 450
Cdd:TIGR02063 265 FDDAVYVEKLKDGNYKLGVAIADVSHYVREGSALDKEALKRGTSVYLPDrvipmlperlsngicslnpnedrltlsceme 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 451 -----KILEEWFGRTIIRSCTKLSYDHAQSMIENptEKIPEEELPPISPEhsveevhqaVLNLHSIAKQLRRQRFVDGAL 525
Cdd:TIGR02063 345 idkkgRVKKYEFYEAVINSHARLTYNQVNDIIEG--KDALDKKEPPLKEM---------LKNLFELYKILRKKRKKRGAI 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 526 RLDQLKLAFTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTfPEQALLRRHPPPQTKMLSDLVEFCDQMG 605
Cdd:TIGR02063 414 DFDSKEAKIILD-ENGKPIDIVPRERGDAHKLIEEFMIAANETVAEHLEKA-KLPFIYRVHERPSEEKLQNLREFLKTLG 491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 606 LPMDVSSA-----GALNKSLTKTFGDDKYSLARKEVLtnmysRPMQMALYfcsgmlqDQEQFRHYALNVPLYTHFTSPIR 680
Cdd:TIGR02063 492 ITLKGGTSdkpqpKDFQKLLEKVKGRPEEELINTVLL-----RSMQQAKY-------SPENIGHFGLALEYYTHFTSPIR 559
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 568908471 681 RFADVIVHRLLAAALG------YSEQPDVEPDTLQKQADHCNDR 718
Cdd:TIGR02063 560 RYPDLIVHRLIKKALFggenttTEKEREYLEAKLEEIAEHSSKT 603
|
|
| Dis3l2_C_term |
pfam17877 |
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. ... |
742-831 |
3.73e-31 |
|
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. Dis3L2 belongs to the RNase II/R 3-5 exonuclease superfamily, which includes the catalytic subunit of the RNA exosome in yeast and in humans.
Pssm-ID: 465547 Cd Length: 87 Bit Score: 116.98 E-value: 3.73e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 742 GPLESEAMVMGVLNQAFDVLVLRFGVQKRIYCNALALRSYSFQKVGKkpeLTLVWEPDDLEEEPTQQVITIFSLVDVVLQ 821
Cdd:pfam17877 1 GPLETEAVVLGVLDSSFDVLIPEYGIEKRVYLDQLPLKKFEFDKTGV---LTLYWKKGVPSSAYVPEDERFSSLVVVVLK 77
|
90
....*....|
gi 568908471 822 AEATALKYSA 831
Cdd:pfam17877 78 SDSDPLKLEA 87
|
|
| PRK11642 |
PRK11642 |
ribonuclease R; |
377-699 |
5.03e-25 |
|
ribonuclease R;
Pssm-ID: 236944 [Multi-domain] Cd Length: 813 Bit Score: 111.76 E-value: 5.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 377 PDEVGKRR-DLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYL---VQKI 452
Cdd:PRK11642 253 PEEAKAGRvDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFpsqVVPM 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 453 LEEW---------------------------------FGRTIIRSCTKLSYDHAQSMIENpTEKIPEEELPPISPehsVE 499
Cdd:PRK11642 333 LPEVlsnglcslnpqvdrlcmvcemtisskgrltgykFYEAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKH---LE 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 500 EVHqavlNLHSIAKQLRRQRfvdGALRLDQLKLAFTLDHETGLPQgCHIYEYRDSNKLVEEFMLLANMAVAhKIFRTFPE 579
Cdd:PRK11642 409 ELH----NLYKVLDKAREER---GGISFESEEAKFIFNAERRIER-IEQTQRNDAHKLIEECMILANISAA-RFVEKAKE 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 580 QALLRRHPPPQTKMLSDLVEFCDQMGLpmdvsSAGALNKSLTKTFGDDKYSLARK---EVLTNMYSRPMQMALYfcsgml 656
Cdd:PRK11642 480 PALFRIHDKPSTEAITSFRSVLAELGL-----ELPGGNKPEPRDYAELLESVADRpdaEMLQTMLLRSMKQAIY------ 548
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 568908471 657 qDQEQFRHYALNVPLYTHFTSPIRRFADVIVHR----LLAAALGYSE 699
Cdd:PRK11642 549 -DPENRGHFGLALQSYAHFTSPIRRYPDLSLHRaikyLLAKEQGHKG 594
|
|
| Rrp44_CSD1 |
pfam17216 |
Rrp44-like cold shock domain; |
50-250 |
2.47e-10 |
|
Rrp44-like cold shock domain;
Pssm-ID: 375054 Cd Length: 148 Bit Score: 59.40 E-value: 2.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 50 FETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNGDLVVVKLLPEDQWKPritlsl 129
Cdd:pfam17216 4 FPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKA------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 130 PGVLGLQAVKPESNDKeieatyeadipeegcghhplqqsrkgwsgPDviIEAQfDDSDSEDRHGNTSGLVDGVKKLsist 209
Cdd:pfam17216 78 PSSIVLDSEHFDVNDN-----------------------------PD--IEAG-DDDDNNESSSNTTVISDKQRRL---- 121
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568908471 210 pdrgkedsstpVMKDenTPIPQDTrglseKSLQKSAKVVYI 250
Cdd:pfam17216 122 -----------LAKD--AMIAQRS-----KKIQPTAKVVYI 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| VacB |
COG0557 |
Exoribonuclease R [Transcription]; |
228-721 |
2.60e-96 |
|
Exoribonuclease R [Transcription];
Pssm-ID: 440323 [Multi-domain] Cd Length: 711 Bit Score: 316.66 E-value: 2.60e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 228 PIPQDTRGLSEkslqksAKVVYILEKKHSRAaTGILKLLadknsdlfKKYALFSPSDHRVPR-IYVPLKDCPQdfmtrPK 306
Cdd:COG0557 113 VTKEDRRGRPE------GRVVEILERANTRV-VGRFEKE--------KGFGFVVPDDKRLLQdIFIPPDDLNG-----AK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 307 DfaNTLFICRIIDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFsDFSSEVLECLpQSLPWTIPPDEVGKRRDL 386
Cdd:COG0557 173 D--GDLVVVEITRYPERRGPPEGRVVEVLGSPGDPGAEILIAIRKHGLPH-EFPEEVLAEA-EALPDEVPEADLKGRRDL 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 387 RKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQ---------------- 450
Cdd:COG0557 249 RDLPLVTIDGEDAKDFDDAVSAEKLDNGGWRLGVHIADVSHYVRPGSALDREARKRGTSVYLPDrvipmlperlsnglcs 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 451 --------------------KILEEWFGRTIIRSCTKLSYDHAQSMIENPTEKIPEEElppispehsvEEVHQAVLNLHS 510
Cdd:COG0557 329 lnpgedrlamscemeidakgEVVSYEFYRSVIRSDARLTYEEVQAILDGKDEELREEY----------ADLVPMLEELYE 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 511 IAKQLRRQRFVDGALRLDQLKLAFTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTfpEQALLRR-HPPP 589
Cdd:COG0557 399 LAKILRKAREKRGAIDFDLPETKIILD-EEGKPEDIVPRERNDAHKLIEEFMLLANEAVAEFLEKL--KLPFLYRvHEEP 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 590 QTKMLSDLVEFCDQMGLPM---DVSSAGALNKsLTKTFGDDKYSlarkEVLTNMYSRPMQMALYfcsgmlqDQEQFRHYA 666
Cdd:COG0557 476 DPEKLEALREFLANLGLKLkggDEPTPKDLQK-LLEQVKGRPEE----ELLNTLLLRSMKQAVY-------SPENIGHFG 543
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 568908471 667 LNVPLYTHFTSPIRRFADVIVHRLLAAALG---YSEQPDVEPDTLQKQADHCNDR-RMA 721
Cdd:COG0557 544 LALEAYTHFTSPIRRYPDLLVHRALKAYLEgkrSPGLQEYLEEELEEIAEHCSETeRRA 602
|
|
| RNB |
pfam00773 |
RNB domain; This domain is the catalytic domain of ribonuclease II. |
383-695 |
5.21e-87 |
|
RNB domain; This domain is the catalytic domain of ribonuclease II.
Pssm-ID: 459934 [Multi-domain] Cd Length: 314 Bit Score: 279.17 E-value: 5.21e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 383 RRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQ------------ 450
Cdd:pfam00773 1 RKDLRDLPFITIDPADAKDLDDAISVEKLPNGGYRLGVHIADVSHYVPPGSPLDREARKRGTSVYLPDrvipmlpeklsn 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 451 ------------------------KILEEWFGRTIIRSCTKLSYDHAQSMIENPTEKIPEEELppispehsveevHQAVL 506
Cdd:pfam00773 81 dlcslnpgedrlalsveitidadgEVTSYEIYPSVIRSKARLTYEEVDDLLEGKDAEKDKPDL------------AEDLR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 507 NLHSIAKQLRRQRFVDGALRLDQLKLAFTLDHETglPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIfRTFPEQALLRRH 586
Cdd:pfam00773 149 LLYELAKILRAKRLQRGALDLDTPENKLILDEEG--VIDILIQERTDAHSLIEEFMLLANEAVARHL-QELGIPALYRVH 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 587 PPPQTKMLSDLVEFCDQMGLPMdvssagALNKSLTKTFGDdkyslarKEVLTNMYSRPMQMALYFcsgmlqdQEQFRHYA 666
Cdd:pfam00773 226 PEPDLEKLNSLIKLLQLLPDDK------GLSKSLEKIKDD-------ERLLSILLLRTMPRAEYS-------PEPLGHFG 285
|
330 340
....*....|....*....|....*....
gi 568908471 667 LNVPLYTHFTSPIRRFADVIVHRLLAAAL 695
Cdd:pfam00773 286 LGLDIYTHFTSPIRRYPDLIVHRQLKALL 314
|
|
| RNB |
smart00955 |
This domain is the catalytic domain of ribonuclease II; |
383-696 |
1.46e-78 |
|
This domain is the catalytic domain of ribonuclease II;
Pssm-ID: 214935 [Multi-domain] Cd Length: 286 Bit Score: 255.65 E-value: 1.46e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 383 RRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQK----------- 451
Cdd:smart00955 1 RVDLRDLPLFTIDPEDAKDIDDAVSVEKLDNGGYRLGVHIADVSHYVKPGSALDREARKRGTSVYLPDRvipmlpeelsn 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 452 --------------------------ILEEWFGRTIIRSCTKLSYDHAQSMIENptekipeeelppispehsveevhqav 505
Cdd:smart00955 81 glcslnpgedrlalsvemtldadggeILDYEFYRSVIRSKARLTYEEVDAILEK-------------------------- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 506 lnlhsiakqlrrqrfvdgalrldqlklaFTLDHEtGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTFPeQALLRR 585
Cdd:smart00955 135 ----------------------------IVLDEE-GKIEDIVPRERNDAHSLVEEFMILANEAVARFLAKNGI-PGLYRV 184
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 586 HPPPQTKMLSD-LVEFCDQMGLPM-DVSSAGALNKSLTKTFGDDKyslarKEVLTNMYSRPMQMALYFCSGmlqdqeqFR 663
Cdd:smart00955 185 HEGPDPEKLAElLKEFLALLGLLLlGGDGPKALAKLLEKIRDSPE-----ERLLELLLLRSMPHAEYSVDN-------SG 252
|
330 340 350
....*....|....*....|....*....|...
gi 568908471 664 HYALNVPLYTHFTSPIRRFADVIVHRLLAAALG 696
Cdd:smart00955 253 HFGLALDAYTHFTSPIRRYPDLIVHRQLKAALR 285
|
|
| RNase_R |
TIGR02063 |
ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. ... |
243-718 |
1.96e-72 |
|
ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA]
Pssm-ID: 273947 [Multi-domain] Cd Length: 709 Bit Score: 251.81 E-value: 1.96e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 243 KSAKVVYILEKKHSRAATGILKLladknsdlfKKYALFSPSDHRVP-RIYVPLKDCpqdfmTRPKDfaNTLFICRIIDWK 321
Cdd:TIGR02063 123 FEARVIKILERANDQIVGTFYIE---------NGIGFVIPDDKRIYlDIFIPPEQI-----LGAEE--GDKVLVEITKYP 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 322 EDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFsDFSSEVLEcLPQSLPWTIPPDEVGKRRDLRKDCIFTIDPSTARD 401
Cdd:TIGR02063 187 DRNRPAIGKVVEILGHADDPGIDILIIIRKHGIPY-EFPEEVLD-EAAKIPEEVPEEEIKGRKDLRDLPFVTIDGEDAKD 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 402 LDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQ------------------------------- 450
Cdd:TIGR02063 265 FDDAVYVEKLKDGNYKLGVAIADVSHYVREGSALDKEALKRGTSVYLPDrvipmlperlsngicslnpnedrltlsceme 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 451 -----KILEEWFGRTIIRSCTKLSYDHAQSMIENptEKIPEEELPPISPEhsveevhqaVLNLHSIAKQLRRQRFVDGAL 525
Cdd:TIGR02063 345 idkkgRVKKYEFYEAVINSHARLTYNQVNDIIEG--KDALDKKEPPLKEM---------LKNLFELYKILRKKRKKRGAI 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 526 RLDQLKLAFTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTfPEQALLRRHPPPQTKMLSDLVEFCDQMG 605
Cdd:TIGR02063 414 DFDSKEAKIILD-ENGKPIDIVPRERGDAHKLIEEFMIAANETVAEHLEKA-KLPFIYRVHERPSEEKLQNLREFLKTLG 491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 606 LPMDVSSA-----GALNKSLTKTFGDDKYSLARKEVLtnmysRPMQMALYfcsgmlqDQEQFRHYALNVPLYTHFTSPIR 680
Cdd:TIGR02063 492 ITLKGGTSdkpqpKDFQKLLEKVKGRPEEELINTVLL-----RSMQQAKY-------SPENIGHFGLALEYYTHFTSPIR 559
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 568908471 681 RFADVIVHRLLAAALG------YSEQPDVEPDTLQKQADHCNDR 718
Cdd:TIGR02063 560 RYPDLIVHRLIKKALFggenttTEKEREYLEAKLEEIAEHSSKT 603
|
|
| 3_prime_RNase |
TIGR00358 |
VacB and RNase II family 3'-5' exoribonucleases; This model is defined to identify a pair of ... |
227-719 |
6.30e-49 |
|
VacB and RNase II family 3'-5' exoribonucleases; This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases. [Transcription, Degradation of RNA]
Pssm-ID: 273033 [Multi-domain] Cd Length: 654 Bit Score: 184.15 E-value: 6.30e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 227 TPIPQDTRGlsekslQKSAKVVYILEKKHSRAATGILklladknsdlFKKYALFSPSDHrvPRIYVPLKdCPQDfmTRPK 306
Cdd:TIGR00358 60 CPLSQPQRG------RFEAEVERILEPALTRFVGKFL----------GENDFGFVVPDD--PRIYLDII-VPKA--SVKN 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 307 DFA-NTLFICRIIDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFSDfsSEVLECLPQSLPWTIPPDEVGKRRD 385
Cdd:TIGR00358 119 ELAeGDKVVVELTEYPLRRNLFYGEITQILGNNDDPLIPWWVTLARHEIPFEF--PDGVEQQAAKLQFDVDEQAKKYRED 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 386 LRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQ--------------- 450
Cdd:TIGR00358 197 LTDLAFVTIDGADAKDLDDAVYVKKLPDGGWKLYVAIADVSYYVAENSPLDKEAKHRGFSVYLPGfvipmlpeelsnglc 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 451 ---------------------KILEEWFGRTIIRSCTKLSYDHAQSMIENptekipEEELPPISPEhSVEEVHQavlnLH 509
Cdd:TIGR00358 277 slnpnedrlvlvcemtisaqgRITDNEFYPATIESKARLTYDKVNDWLEN------DDELQPEYET-LVEQLKA----LH 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 510 SIAKQLRRQRFVDGALRLDQLKLAFTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAhKIFRTFPEQALLRRHPPP 589
Cdd:TIGR00358 346 QLSQALGEWRHKRGLIDFEHPETKFIVD-EEGRVIDIVAEVRRIAEKIIEEAMIVANICAA-RFLHNHKVPGIYRVHPGP 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 590 QTKMLSDLVEFCDQMGLPMDVSSAGALNKSltktfgdDKYSLARK-------EVLTNMYSRPMQMALYfcsgmlqDQEQF 662
Cdd:TIGR00358 424 SKKKLQSLLEFLAELGLTLPGGNAENVTTL-------DGACWLREvkdrpeyEILVTRLLRSLSQAEY-------SPEPL 489
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568908471 663 RHYALNVPLYTHFTSPIRRFADVIVHRLLAAALgYSEQPDVEPDTLQ----KQADHCNDRR 719
Cdd:TIGR00358 490 GHFGLGLEHYAHFTSPIRRYPDLTNHRLIKAVL-AKEQTDTERYQPQdellQIAEHCSDTE 549
|
|
| Dis3l2_C_term |
pfam17877 |
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. ... |
742-831 |
3.73e-31 |
|
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. Dis3L2 belongs to the RNase II/R 3-5 exonuclease superfamily, which includes the catalytic subunit of the RNA exosome in yeast and in humans.
Pssm-ID: 465547 Cd Length: 87 Bit Score: 116.98 E-value: 3.73e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 742 GPLESEAMVMGVLNQAFDVLVLRFGVQKRIYCNALALRSYSFQKVGKkpeLTLVWEPDDLEEEPTQQVITIFSLVDVVLQ 821
Cdd:pfam17877 1 GPLETEAVVLGVLDSSFDVLIPEYGIEKRVYLDQLPLKKFEFDKTGV---LTLYWKKGVPSSAYVPEDERFSSLVVVVLK 77
|
90
....*....|
gi 568908471 822 AEATALKYSA 831
Cdd:pfam17877 78 SDSDPLKLEA 87
|
|
| OB_Dis3 |
pfam17849 |
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 ... |
277-353 |
9.71e-31 |
|
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 protein. This domain along with CSD1 binds to RNA.
Pssm-ID: 436091 [Multi-domain] Cd Length: 77 Bit Score: 115.40 E-value: 9.71e-31
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568908471 277 YALFSPSDHRVPRIYVPLKDCPQDFMTRPKDFANTLFICRIIDWKEDCNFALGQLAKSLGQAGEIEPETEGILTEYG 353
Cdd:pfam17849 1 YVLFVPRDKRIPRIRIPTKSAPEEFLENPEDLEGKLFVVKIDDWPENSRYPLGHIVKVLGEIGDIETETEAILLENG 77
|
|
| PRK11642 |
PRK11642 |
ribonuclease R; |
377-699 |
5.03e-25 |
|
ribonuclease R;
Pssm-ID: 236944 [Multi-domain] Cd Length: 813 Bit Score: 111.76 E-value: 5.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 377 PDEVGKRR-DLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYL---VQKI 452
Cdd:PRK11642 253 PEEAKAGRvDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFpsqVVPM 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 453 LEEW---------------------------------FGRTIIRSCTKLSYDHAQSMIENpTEKIPEEELPPISPehsVE 499
Cdd:PRK11642 333 LPEVlsnglcslnpqvdrlcmvcemtisskgrltgykFYEAVMSSHARLTYTKVWHILQG-DQDLREQYAPLVKH---LE 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 500 EVHqavlNLHSIAKQLRRQRfvdGALRLDQLKLAFTLDHETGLPQgCHIYEYRDSNKLVEEFMLLANMAVAhKIFRTFPE 579
Cdd:PRK11642 409 ELH----NLYKVLDKAREER---GGISFESEEAKFIFNAERRIER-IEQTQRNDAHKLIEECMILANISAA-RFVEKAKE 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 580 QALLRRHPPPQTKMLSDLVEFCDQMGLpmdvsSAGALNKSLTKTFGDDKYSLARK---EVLTNMYSRPMQMALYfcsgml 656
Cdd:PRK11642 480 PALFRIHDKPSTEAITSFRSVLAELGL-----ELPGGNKPEPRDYAELLESVADRpdaEMLQTMLLRSMKQAIY------ 548
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 568908471 657 qDQEQFRHYALNVPLYTHFTSPIRRFADVIVHR----LLAAALGYSE 699
Cdd:PRK11642 549 -DPENRGHFGLALQSYAHFTSPIRRYPDLSLHRaikyLLAKEQGHKG 594
|
|
| Rnb |
COG4776 |
Exoribonuclease II [Transcription]; |
372-721 |
6.96e-24 |
|
Exoribonuclease II [Transcription];
Pssm-ID: 443808 [Multi-domain] Cd Length: 644 Bit Score: 107.25 E-value: 6.96e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 372 PWTIPpDEVGKRRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYL--- 448
Cdd:COG4776 180 EWELL-DEGLEREDLTALPFVTIDSESTEDMDDALYIEKLENGGWKLTVAIADPTAYIPEGSELDKEARQRAFTNYLpgf 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 449 ------------------------------VQK---ILE--EWFGRTIiRSCTKLSYDHAQSMIENPTEKIPEEElppis 493
Cdd:COG4776 259 nipmlprelsddlcslkenekrpalvcrvtIDAdgsIGDdiEFFAAWI-RSKAKLAYDNVSDWLEGKGEWQPENE----- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 494 pehsveEVHQAVLNLHSIAkQLRRQRFVDGALRL-DQLKLAFTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHK 572
Cdd:COG4776 333 ------EIAEQIRLLHQFA-LARSQWRQQHALVFkDRPDYRFELD-EKGNVLDIHAEPRRIANRIVEEAMIAANICAARV 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 573 --------IFRT---F-PE-----QALLRRHPPPQTK-MLSDLVEFCdQMGLPMDVSSAGALNKSLTK--TFGDDKysla 632
Cdd:COG4776 405 lrehlgfgIFNVhsgFdPEkleqaVELLAEHGIEFDPeQLLTLEGFC-ALRRELDAQPTSYLDSRLRRfqTFAEIS---- 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 633 rkevltnmysrpmqmalyfcsgmlqdQEQFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAALgySEQPDVEPD--TLQK 710
Cdd:COG4776 480 --------------------------TEPGPHFGLGLDAYATWTSPIRKYGDMVNHRLIKAVI--LGQPAEKPDeeLTER 531
|
410
....*....|.
gi 568908471 711 QADHCNDRRMA 721
Cdd:COG4776 532 LAERRRLNRMA 542
|
|
| PRK05054 |
PRK05054 |
exoribonuclease II; Provisional |
372-725 |
1.99e-22 |
|
exoribonuclease II; Provisional
Pssm-ID: 179920 [Multi-domain] Cd Length: 644 Bit Score: 102.65 E-value: 1.99e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 372 PWTIPpDEVGKRRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYL--- 448
Cdd:PRK05054 180 AWEML-DEGLEREDLTALDFVTIDSASTEDMDDALYVEKLPDGGLQLTVAIADPTAYIAEGSKLDKAARQRAFTNYLpgf 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 449 ------------------------------VQK---ILEE--WFGRTiIRSCTKLSYDHAQSMIENPTEKIPEEelppis 493
Cdd:PRK05054 259 nipmlprelsddlcslrpnerrpalacrvtIDAdgtIEDDirFFAAW-IESKAKLAYDNVSDWLENGGDWQPES------ 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 494 pehsvEEVHQAVLNLHSIAkQLRRQ-RFVDGALRLDQLKLAFTLDhETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAH- 571
Cdd:PRK05054 332 -----EAIAEQIRLLHQFC-LARSEwRKQHALVFKDRPDYRFELG-EKGEVLDIVAEPRRIANRIVEESMIAANICAARv 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 572 -------KIFRT-------FPEQA--LLRRHPPPQT-KMLSDLVEFCdQMGLPMDVSSAGALNKSLTK--TFGDDKYSLA 632
Cdd:PRK05054 405 lrdklgfGIYNVhsgfdpaNAEQAvaLLKEHGLHFDaEELLTLEGFC-KLRRELDAQPTGYLDSRIRRfqSFAEISTEPG 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 633 rkevltnmysrPmqmalyfcsgmlqdqeqfrHYALNVPLYTHFTSPIRRFADVIVHRLLAAALGYSEQPDVEPDTLQKQA 712
Cdd:PRK05054 484 -----------P-------------------HFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAERPQDEITVQLA 533
|
410
....*....|...
gi 568908471 713 DHCNDRRMASKRV 725
Cdd:PRK05054 534 ERRRLNRMAERDV 546
|
|
| Rrp44_CSD1 |
pfam17216 |
Rrp44-like cold shock domain; |
50-250 |
2.47e-10 |
|
Rrp44-like cold shock domain;
Pssm-ID: 375054 Cd Length: 148 Bit Score: 59.40 E-value: 2.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 50 FETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNGDLVVVKLLPEDQWKPritlsl 129
Cdd:pfam17216 4 FPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKA------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568908471 130 PGVLGLQAVKPESNDKeieatyeadipeegcghhplqqsrkgwsgPDviIEAQfDDSDSEDRHGNTSGLVDGVKKLsist 209
Cdd:pfam17216 78 PSSIVLDSEHFDVNDN-----------------------------PD--IEAG-DDDDNNESSSNTTVISDKQRRL---- 121
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568908471 210 pdrgkedsstpVMKDenTPIPQDTrglseKSLQKSAKVVYI 250
Cdd:pfam17216 122 -----------LAKD--AMIAQRS-----KKIQPTAKVVYI 144
|
|
| |
