|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
61-652 |
6.50e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 6.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 61 AEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFnsEII 140
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KEL 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 141 QLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLER---------EYFSQNKKLNEEI 211
Cdd:TIGR02168 439 QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlegfsEGVKALLKNQSGL 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 212 EDQKKVIID---------------LSKRLQY----NEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQ 272
Cdd:TIGR02168 519 SGILGVLSElisvdegyeaaieaaLGGRLQAvvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIE 598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 273 WTSGVHKDKDK-PPSFSVVLETLRRTL---TDYQNKLEDASNELNN----------------INDAKEKTSN-------E 325
Cdd:TIGR02168 599 GFLGVAKDLVKfDPKLRKALSYLLGGVlvvDDLDNALELAKKLRPGyrivtldgdlvrpggvITGGSAKTNSsilerrrE 678
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 326 LDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHCWEKEKACAAQCESELQKLSQA--- 402
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKElte 758
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 403 FQKDSEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKFswSELCAVLQENVDALIADLNRANEKISHLEYICKNKSDTMREL 482
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL--KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 483 QQTQEDTfnkvaeqikaqescwQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETSHEQLVRENSHFkTTLS 562
Cdd:TIGR02168 837 ERRLEDL---------------EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL-EELS 900
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 563 RTQREqtcllaacalmagalcpLYSRSCALSTQRDFLQEQVNSLEL----FKLEIRTLAQALSAVDEKKQEEAKTKKKTF 638
Cdd:TIGR02168 901 EELRE-----------------LESKRSELRRELEELREKLAQLELrlegLEVRIDNLQERLSEEYSLTLEEAEALENKI 963
|
650
....*....|....
gi 568926841 639 KGLVRVFRKGVIAI 652
Cdd:TIGR02168 964 EDDEEEARRRLKRL 977
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
38-379 |
1.01e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 38 RLVWEDGrprrDWPRRSGF-KRGSAEQDSAVQSMQKKVEQLEAEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRV 116
Cdd:TIGR02168 646 RIVTLDG----DLVRPGGViTGGSAKTNSSILERRREIEELEEK-------IEELEEKIAELEKALAELRKELEELEEEL 714
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 117 RKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVAdlemiknefkevesayEREKQNTQESCAKLNLL 196
Cdd:TIGR02168 715 EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA----------------EIEELEERLEEAEEELA 778
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 197 EREyfsqnkklnEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSG 276
Cdd:TIGR02168 779 EAE---------AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 277 VHKDKDkppSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSH 356
Cdd:TIGR02168 850 LSEDIE---SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQ 926
|
330 340
....*....|....*....|...
gi 568926841 357 LRAKCAdrealitSLKVELQNVL 379
Cdd:TIGR02168 927 LELRLE-------GLEVRIDNLQ 942
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
61-360 |
5.98e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 5.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 61 AEQDSAVQSMQKKVEQLEAEhmdcSDLLRRQTSELEfstQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEII 140
Cdd:TIGR02168 694 AELEKALAELRKELEELEEE----LEQLRKELEELS---RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 141 QLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKqntqescAKLNLLEREYFSQNKKLneeiEDQKKVIID 220
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR-------AELTLLNEEAANLRERL----ESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 221 LSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQwtsGVHKDKDKPPSFSVVLETLRRTLTD 300
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE---ALALLRSELEELSEELRELESKRSE 912
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568926841 301 YQNKLEDASNELNNINDAKEKTSNELDSTKQKI--------ETHIKNTKELQDKLTEVHKELSHLRAK 360
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLseeysltlEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
63-350 |
1.44e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 63 QDSAVQSMQKKVEQLEAEHMDCS-DLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQ 141
Cdd:TIGR02168 208 QAEKAERYKELKAELRELELALLvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 142 LR-------IRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQ 214
Cdd:TIGR02168 288 KElyalaneISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 215 KkviiDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKPPSFSVV--LE 292
Cdd:TIGR02168 368 E----ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQaeLE 443
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 568926841 293 TLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEV 350
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
302-1082 |
4.72e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 4.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 302 QNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKnTKELQDKLTEVHKELSHLRAKCADREalITSLKVELQNVLHC 381
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQAEKAER-YKELKAELRELELALLVLRLEELREE--LEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 382 WEKEKACAAQCESELQKLSQAFQKDSEEKLTFLHTLYQHLVagcvLIKQPEGMLdkfswselcAVLQENVDALIADLNRA 461
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN----EISRLEQQK---------QILRERLANLERQLEEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 462 NEKISHLEyickNKSDTMRE---LQQTQEDTFNKVAEQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEI---AEK 535
Cdd:TIGR02168 322 EAQLEELE----SKLDELAEelaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLelqIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 536 NSEKLNRIETSHEQLVREnshfkttLSRTQREQTCLLAAcaLMAGALCPLYSRSCALSTQRDFLQEQVNSLELFKLEIRT 615
Cdd:TIGR02168 398 LNNEIERLEARLERLEDR-------RERLQQEIEELLKK--LEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 616 -LAQALSAVDEKKQEEAKTKKKtFKGLVRVFR------KGVIAILA-ANRLKLLGQSCAFLFTWMES--------CKEGI 679
Cdd:TIGR02168 469 eLEEAEQALDAAERELAQLQAR-LDSLERLQEnlegfsEGVKALLKnQSGLSGILGVLSELISVDEGyeaaieaaLGGRL 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 680 GMLVCTGEPKDKR--QFPKHQREQLRCLQALAWLTSSDLLGTVISSMTELQEVIS------KTDPNSR-----ICGHLLI 746
Cdd:TIGR02168 548 QAVVVENLNAAKKaiAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGvakdlvKFDPKLRkalsyLLGGVLV 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 747 gaaknsfaklMDKLSSAMASIPLHSSRSITYVEKDSLVQR---LARGLHKVNTLALKYG-----LCSHIPIMKSTAA-LQ 817
Cdd:TIGR02168 628 ----------VDDLDNALELAKKLRPGYRIVTLDGDLVRPggvITGGSAKTNSSILERRreieeLEEKIEELEEKIAeLE 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 818 KQIFGFTQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQTQLNEFKHSKLITHEKFEsacEELNNALLREQQAQ 897
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE---AEIEELEERLEEAE 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 898 MLLNEQAQQLQELNYRLELHSSEeadkNQTLGEAVKSLSEAKMELRRKDQSLRQ-----------LNRHLTQLEQDKRRL 966
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEE----LKALREALDELRAELTLLNEEAANLRErleslerriaaTERRLEDLEEQIEEL 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 967 EENI--------------RDAESALRMAAKDKECVANHMRTIENMLHKVRDQISLSRTAATRNDFTLQLPKLHLETFAM- 1031
Cdd:TIGR02168 851 SEDIeslaaeieeleeliEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELr 930
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 568926841 1032 -EGLQGGPEVVACQAMiKSFMDVYQLASARISTLEKEMTSHRSHIATLKSEL 1082
Cdd:TIGR02168 931 lEGLEVRIDNLQERLS-EEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
319-1091 |
1.09e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 319 KEKTSNELDSTKQkiethikNTKELQDKLTEVHKELSHLR--AKCADR------------EALITSLKVELQNVLHCWEK 384
Cdd:TIGR02168 174 RKETERKLERTRE-------NLDRLEDILNELERQLKSLErqAEKAERykelkaelreleLALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 385 EKACAAQCESELQKLSQAFQKDSEEKLTFLHTL------YQHLVAGCV-LIKQPEGMLdkfswselcAVLQENVDALIAD 457
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELeeeieeLQKELYALAnEISRLEQQK---------QILRERLANLERQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 458 LNRANEKISHLEyickNKSDTMRE---LQQTQEDTFNKVAEQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEI-- 532
Cdd:TIGR02168 318 LEELEAQLEELE----SKLDELAEelaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLel 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 533 -AEKNSEKLNRIETSHEQLVREnshfkttLSRTQREQTCLLAacALMAGALCPLYSRSCALSTQRDFLQEQVNSLELFKL 611
Cdd:TIGR02168 394 qIASLNNEIERLEARLERLEDR-------RERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 612 EIRT-LAQALSAVDEKKQEEAKTKKKtFKGLVRVFR------KGVIAILA-ANRLKLLGQSCAFLFTWMES--------C 675
Cdd:TIGR02168 465 ELREeLEEAEQALDAAERELAQLQAR-LDSLERLQEnlegfsEGVKALLKnQSGLSGILGVLSELISVDEGyeaaieaaL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 676 KEGIGMLVCTGEPKDKR--QFPKHQREQLRCLQALAWLTSSDLLGTVISSMTELQEVIS------KTDPNSR-----ICG 742
Cdd:TIGR02168 544 GGRLQAVVVENLNAAKKaiAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGvakdlvKFDPKLRkalsyLLG 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 743 HLLIgaaknsfaklMDKLSSAMASIPLHSSRSITYVEKDSLVQR---LARGLHKVNTLALKYGlcshipimKSTAALQKQ 819
Cdd:TIGR02168 624 GVLV----------VDDLDNALELAKKLRPGYRIVTLDGDLVRPggvITGGSAKTNSSILERR--------REIEELEEK 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 820 IFGFTQRLHAAEVERRSLRLEVTEYKRTVHEMKKELdksQSLQTQLNEFKHSKLITHEKFESACEELNNALLREQQAQML 899
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKEL---EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 900 LNEQAQQLQELNYRLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESALRM 979
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 980 AAKDKEcvanhmrtienmlhkvRDQISLSRTAATRNDFTLQLPKLHLETfamEGLQGgpEVVACQAMIKSFMDVYQLASA 1059
Cdd:TIGR02168 843 LEEQIE----------------ELSEDIESLAAEIEELEELIEELESEL---EALLN--ERASLEEALALLRSELEELSE 901
|
810 820 830
....*....|....*....|....*....|..
gi 568926841 1060 RISTLEKEMTSHRSHIATLKSELHTACLRENE 1091
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEG 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
61-264 |
1.31e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 61 AEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLEskfnseiI 140
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE-------L 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 141 QLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQEscaKLNLLEREYFSQNKKLNEEIEDQKKvIID 220
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE---AEEELEELAEELLEALRAAAELAAQ-LEE 404
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568926841 221 LSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESIL 264
Cdd:COG1196 405 LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
86-643 |
1.40e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 86 DLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEEniEAERAAHLESKFNSeiIQLRIRDLEGALQVEKASQAEAVADL 165
Cdd:PRK03918 193 ELIKEKEKELEEVLREINEISSELPELREELEKLEK--EVKELEELKEEIEE--LEKELESLEGSKRKLEEKIRELEERI 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 166 EMIKNEFKEVESAYEREKqntqescaKLNLLEREYfsqnKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKH 245
Cdd:PRK03918 269 EELKKEIEELEEKVKELK--------ELKEKAEEY----IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 246 QAFLVETcENNVRELESILGSFSVSaqwtsgvHKDKDKPPSFSVVLETLRRTLTDYQnkLEDASNELNNINDAKEKTSNE 325
Cdd:PRK03918 337 EERLEEL-KKKLKELEKRLEELEER-------HELYEEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 326 LDSTKQKIETHIKNTKELQDKLTEVHKElshlRAKCA---------DREALITSLKVELQNVlhcwEKEKACAAQCESEL 396
Cdd:PRK03918 407 ISKITARIGELKKEIKELKKAIEELKKA----KGKCPvcgrelteeHRKELLEEYTAELKRI----EKELKEIEEKERKL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 397 QKLSQAFQK--DSEEKLTFLHTLYQhlvagcvLIKQPEGMLDKFSWSELCA------VLQENVDALIADLNRANEKISHL 468
Cdd:PRK03918 479 RKELRELEKvlKKESELIKLKELAE-------QLKELEEKLKKYNLEELEKkaeeyeKLKEKLIKLKGEIKSLKKELEKL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 469 EYICKNKSDTMRELQQTQEdtfnKVAEQIKAQESCWQKQKKELEFQYSEL----------------LLEVQRRAQKFQEI 532
Cdd:PRK03918 552 EELKKKLAELEKKLDELEE----ELAELLKELEELGFESVEELEERLKELepfyneylelkdaekeLEREEKELKKLEEE 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 533 AEKNSEKLNRIETSHEQLVRENSHFKTTLS-----RTQREQTCLLAACALMAGALCPLYSRSCALSTQRDFLQEQVNSLE 607
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEELEKKYSeeeyeELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
570 580 590
....*....|....*....|....*....|....*.
gi 568926841 608 LFKLEIRTLAQALSAVdekkqEEAKTKKKTFKGLVR 643
Cdd:PRK03918 708 KAKKELEKLEKALERV-----EELREKVKKYKALLK 738
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
94-411 |
6.07e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 6.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 94 ELEFSTQREERLRKEFEATTLRVRKLEEnieaERAAHLESKfnseIIQLRIRDLEGALQVekASQAEAVADLEMIKNEFK 173
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRR----EREKAERYQ----ALLKEKREYEGYELL--KEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 174 EVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQ----KKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFL 249
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEqlrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 250 VETCENNVRELESILGSFSVSAqwtsgvhKDKDKppsFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDST 329
Cdd:TIGR02169 328 EAEIDKLLAEIEELEREIEEER-------KRRDK---LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 330 KQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQnvlhcwEKEKACAAQcESELQKLSQAFQKDSEE 409
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE------DKALEIKKQ-EWKLEQLAADLSKYEQE 470
|
..
gi 568926841 410 KL 411
Cdd:TIGR02169 471 LY 472
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
66-544 |
8.18e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 8.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 66 AVQSMQKKVEQLEAEHMDCSDLLRRQtselefsTQREERLRKEFEATTlrvrkleENIEAERA--AHLESKFNSEIIQLR 143
Cdd:pfam15921 111 SVIDLQTKLQEMQMERDAMADIRRRE-------SQSQEDLRNQLQNTV-------HELEAAKClkEDMLEDSNTQIEQLR 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 144 IRDL--EGALQ--------VEKASQAEAVADLEMIKNEFKEVESAYER--EKQNTQESCAK---------LNLLEREyfS 202
Cdd:pfam15921 177 KMMLshEGVLQeirsilvdFEEASGKKIYEHDSMSTMHFRSLGSAISKilRELDTEISYLKgrifpvedqLEALKSE--S 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 203 QNK----------KLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQ 272
Cdd:pfam15921 255 QNKielllqqhqdRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELR 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 273 WTSGVHKDKDKPPSFSVVLETlrRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHK 352
Cdd:pfam15921 335 EAKRMYEDKIEELEKQLVLAN--SELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSI 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 353 ELSHLRAKCADR-------EALITSLKVELQNVLhcwEKEKACAAQCESELQKLSqAFQKDSEEKLTFLHTLYQHLVAGC 425
Cdd:pfam15921 413 TIDHLRRELDDRnmevqrlEALLKAMKSECQGQM---ERQMAAIQGKNESLEKVS-SLTAQLESTKEMLRKVVEELTAKK 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 426 VLIKQPEGMLdkfswSELCAVLQEN---VDALIADL----NRANEKISHLEYIcKNKSDTMRELQ------QTQEDTFNK 492
Cdd:pfam15921 489 MTLESSERTV-----SDLTASLQEKeraIEATNAEItklrSRVDLKLQELQHL-KNEGDHLRNVQtecealKLQMAEKDK 562
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568926841 493 VAEQIKAQ--------------ESCWQKQKKELEFQYSELLLEVqrraQKFQEIAEKNSEKLNRIE 544
Cdd:pfam15921 563 VIEILRQQienmtqlvgqhgrtAGAMQVEKAQLEKEINDRRLEL----QEFKILKDKKDAKIRELE 624
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
66-360 |
1.06e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 66 AVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKL--EENIEAERAAHLESKFNSEiiQLR 143
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAqaEEYELLAELARLEQDIARL--EER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 144 IRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSk 223
Cdd:COG1196 311 RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL- 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 224 rlqynekscgELQEELVMAKKHQAFLVETCENNVRELESILGSfsvsaqwtsgvhkdkdkppsfsvvLETLRRTLTDYQN 303
Cdd:COG1196 390 ----------EALRAAAELAAQLEELEEAEEALLERLERLEEE------------------------LEELEEALAELEE 435
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 568926841 304 KLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAK 360
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
62-377 |
1.20e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 62 EQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVrkleENIEAERAAHLESKFNSEI-- 139
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEI----SDLNNQKEQDWNKELKSELkn 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 140 IQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREyfsqNKKLNEEIEDQKKVII 219
Cdd:TIGR04523 319 QEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE----NQSYKQEIKNLESQIN 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 220 DLSKRLQYNEKSCGELQEELVMAKKhqaflvetcENNVRELE-SILGSFSVSAQWTSGVHKDKDKppSFSVVLETLRRTL 298
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQ---------EKELLEKEiERLKETIIKNNSEIKDLTNQDS--VKELIIKNLDNTR 463
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568926841 299 TDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQN 377
Cdd:TIGR04523 464 ESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISD 542
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
142-411 |
1.37e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 142 LRIRDLEGALQVEKASqaeAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQN----------KKLNEEI 211
Cdd:TIGR02169 677 QRLRERLEGLKRELSS---LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKerleeleedlSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 212 EDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAF-LVETCENNVRELESILGSFSVSAQWTSGVHKDKDKPPSFsvv 290
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY--- 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 291 LETLRRTLTDYQNKLEDASN----ELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREA 366
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKsiekEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 568926841 367 LITSLKvELQNVLhcweKEKACAAQCE-SELQKLSQAFQKDSEEKL 411
Cdd:TIGR02169 911 QIEKKR-KRLSEL----KAKLEALEEElSEIEDPKGEDEEIPEEEL 951
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
848-1137 |
3.25e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 3.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 848 VHEMKKELDKSQS----------LQTQLNEFKHSKLITHekFESACEELNNALLREQQAQMLLNEQAQQLQELNYRLELH 917
Cdd:TIGR02168 195 LNELERQLKSLERqaekaerykeLKAELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAELQELEEKLEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 918 SSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESALRMAAKDkecvanhmrtienm 997
Cdd:TIGR02168 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE-------------- 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 998 LHKVRDQIslsrtaatrndftlqlpklhletfamEGLQggPEVVACQAMIKSFMDVYQLASARISTLEKEMTSHRSHIAT 1077
Cdd:TIGR02168 339 LAELEEKL--------------------------EELK--EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568926841 1078 LKSEL--HTACLRENESLQSMGSRDHSNLSVPSRAAAPMDTVGDLLPLQAELDTTYTFLKET 1137
Cdd:TIGR02168 391 LELQIasLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
92-412 |
7.66e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 7.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 92 TSELEfstQREERLRKEFEaTTLRVRKLEENIEAERAahleskfnsEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNE 171
Cdd:COG1196 195 LGELE---RQLEPLERQAE-KAERYRELKEELKELEA---------ELLLLKLRELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 172 FKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNE---EIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAF 248
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARleqDIARLEERRRELEERLEELEEELAELEEELEELEEELEE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 249 LVETCENNVRELESILGSFSVSAQWTSGVHKDKDKppsfsvVLETLRRTLTDYQNKLEDASNELNNINDAKEktsnELDS 328
Cdd:COG1196 342 LEEELEEAEEELEEAEAELAEAEEALLEAEAELAE------AEEELEELAEELLEALRAAAELAAQLEELEE----AEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 329 TKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHCWEKEKACAAQCESELQKLSQAFQKDSE 408
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
....
gi 568926841 409 EKLT 412
Cdd:COG1196 492 RLLL 495
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
86-972 |
2.56e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 2.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 86 DLLRRQTSELE-FSTQREERLRKEFEATTLRVRKLEENIEA-----ERAAHLESKFNSEI--IQLRIRDLEGALQVEKAS 157
Cdd:TIGR02168 203 KSLERQAEKAErYKELKAELRELELALLVLRLEELREELEElqeelKEAEEELEELTAELqeLEEKLEELRLEVSELEEE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 158 QAEAVADLEMIKNEFKEVEsayeREKQNTQESCAKLNllereyfSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQE 237
Cdd:TIGR02168 283 IEELQKELYALANEISRLE----QQKQILRERLANLE-------RQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 238 ELVMAKKhqafLVETCENNVRELESILgsfsvsaqwtsgvhKDKDKppsfsvVLETLRRTLTDYQNKLEDASNELNNIND 317
Cdd:TIGR02168 352 ELESLEA----ELEELEAELEELESRL--------------EELEE------QLETLRSKVAQLELQIASLNNEIERLEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 318 AKEKTSNELDSTKQKIETHIKNT-----KELQDKLTEVHKELSHLRAKCADREA---LITSLKVELQNVLHCWEKEKACA 389
Cdd:TIGR02168 408 RLERLEDRRERLQQEIEELLKKLeeaelKELQAELEELEEELEELQEELERLEEaleELREELEEAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 390 AQCESELQKLSQAFQKDSEEKLT-FLHTLYQHLVAGCV--LIKQPEGmldkfsWS-ELCAVLQENVDALIA-DLNRANEK 464
Cdd:TIGR02168 488 QARLDSLERLQENLEGFSEGVKAlLKNQSGLSGILGVLseLISVDEG------YEaAIEAALGGRLQAVVVeNLNAAKKA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 465 ISHLEyicKNKSD--TMRELQQTQEDTFNKVAEQIKAQESCWQKQKKELEFQYSEL------LLEVQRRAQKFQEIAE-- 534
Cdd:TIGR02168 562 IAFLK---QNELGrvTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLrkalsyLLGGVLVVDDLDNALEla 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 535 KNSEKLNRIETSHEQLVREN-----SHFKTTLSRTQREQtcllaacalmagalcplysRSCALSTQRDFLQEQVNSLELF 609
Cdd:TIGR02168 639 KKLRPGYRIVTLDGDLVRPGgvitgGSAKTNSSILERRR-------------------EIEELEEKIEELEEKIAELEKA 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 610 KLEIRTLAQALSAVDEKKQEEAKTKKKTFKGLvrvfrKGVIAILAANRLKLLGQSCAFLFTWMESCKEGIGMLVCTGEPK 689
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISAL-----RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 690 DKRQFPKHQREQLRCLQAlawlTSSDLLGTVISSMTELQEVISKTdpnsricghlligaaKNSFAKLMDKLSSamasipL 769
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIE----QLKEELKALREALDELRAELTLL---------------NEEAANLRERLES------L 829
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 770 HSSRSITYVEKDSLVQRLARGLHKVNTLALkyglcSHIPIMKSTAALQKQIFGFTQRLHAAEVERRSLRLEVTEYKRTVH 849
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAA-----EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 850 EMKKELDKSQSLQTQLNEfkhsklithekfesaceELNNALLREQQAQMLLNEQAQQLQELnYRLELH-----------S 918
Cdd:TIGR02168 905 ELESKRSELRRELEELRE-----------------KLAQLELRLEGLEVRIDNLQERLSEE-YSLTLEeaealenkiedD 966
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*....
gi 568926841 919 SEEADKNQT-LGEAVKSLSEAKM----ELRRKDQSLRQLNRHLTQLEQDKRRLEENIRD 972
Cdd:TIGR02168 967 EEEARRRLKrLENKIKELGPVNLaaieEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
316-546 |
3.64e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 316 NDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVlhcwEKEKACAAQCESE 395
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL----EAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 396 LQKLSQAFQKDSEEKLTFLHTLYQHlvAGCVLIKQPEGMLDKFS----WSELCAVLQENVDALIADLNRANEKISHLEYI 471
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQ--PPLALLLSPEDFLDAVRrlqyLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568926841 472 CKNKSDTMRELQQTQEDTFNKVAEQIKAQESCwQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETS 546
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARL-EKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
164-357 |
4.58e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.66 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 164 DLEMIKNEFKEVESAYEREKQNTQEscaKLNLLEREYF------SQNKKLNeeiedqkKVIIDLSKRLQYNEKSCGELQE 237
Cdd:TIGR01612 1545 DSEIIIKEIKDAHKKFILEAEKSEQ---KIKEIKKEKFrieddaAKNDKSN-------KAAIDIQLSLENFENKFLKISD 1614
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 238 elvMAKKHQAFLVETcennvRELESILGSFSVSAQWTSgVHKDKDKPPSFSVVLETLRrtltDYQNKLEDASNELNNIND 317
Cdd:TIGR01612 1615 ---IKKKINDCLKET-----ESIEKKISSFSIDSQDTE-LKENGDNLNSLQEFLESLK----DQKKNIEDKKKELDELDS 1681
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568926841 318 AKEKTSNELDSTK--------QKI-ETHIKNTKELQDKLTEVHKELSHL 357
Cdd:TIGR01612 1682 EIEKIEIDVDQHKknyeigiiEKIkEIAIANKEEIESIKELIEPTIENL 1730
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
319-660 |
5.57e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 5.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 319 KEKTSNELDSTKQKIEthikntkELQDKLTEVHKELSHLRA-----------KCADREALITSLKVELQNVLHCWEKEKA 387
Cdd:COG1196 174 KEEAERKLEATEENLE-------RLEDILGELERQLEPLERqaekaeryrelKEELKELEAELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 388 CAAQCESELQKLSQAFQKDSEEKLTFLHTLYQhlvagcvlikqpegmldkfswselcavLQENVDALIADLNRANEKISH 467
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEE---------------------------LELELEEAQAEEYELLAELAR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 468 LEYICKNKSDTMRELQQTQEDTfNKVAEQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETSH 547
Cdd:COG1196 300 LEQDIARLEERRRELEERLEEL-EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 548 EQLVRENSHFKTTLSRTQREQTCLLAACALMAGALcplySRSCALSTQRDFLQEQVNSLELFKLEIRTLAQALSAVDEKK 627
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALL----ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
330 340 350
....*....|....*....|....*....|...
gi 568926841 628 QEEAKTKKKTFKGLVRVFRKGVIAILAANRLKL 660
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
66-529 |
6.64e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 6.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 66 AVQSMQKKVEQLEAEHmdcsDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIR 145
Cdd:COG4717 72 ELKELEEELKEAEEKE----EEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 146 dLEgALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAK-LNLLEREYfsqnKKLNEEIEDQKKVIIDLSKR 224
Cdd:COG4717 148 -LE-ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEeLQDLAEEL----EELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 225 LQYNEKSCGELQEELVMAKKhqaflvetcENNVRELESILGSFSVSAQWTSGVHKDKDKPPS-----------FSVVLET 293
Cdd:COG4717 222 LEELEEELEQLENELEAAAL---------EERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlglLALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 294 LRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAkcADREALITSLKV 373
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE--LEEELQLEELEQ 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 374 ELQNVLhcwekeKACAAQCESELQKLSQAFQKdSEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKFSWSELCAVLQENVDA 453
Cdd:COG4717 371 EIAALL------AEAGVEDEEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEE 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 454 LIADLNRANEKISHLEYI-----CKNKSDTMRELQQTQEDTFNKVAEQIKAQESCWQKQKKELEFQYSELLLEVQRRAQK 528
Cdd:COG4717 444 LEEELEELREELAELEAEleqleEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPVLERASE 523
|
.
gi 568926841 529 F 529
Cdd:COG4717 524 Y 524
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
319-627 |
8.15e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 8.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 319 KEKTSNELDSTKQKIEthikntkELQDKLTEVHKELSHLRAKCADRE---ALITSL-KVELQNVLHCWEKEKACAAQCES 394
Cdd:TIGR02169 172 KEKALEELEEVEENIE-------RLDLIIDEKRQQLERLRREREKAEryqALLKEKrEYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 395 ELQKLSQAFQKDSEEkltfLHTLYQHLVAGCVLIKQPEGMLDKFSWSELCAVlQENVDALIADLNRANEKISHLEyicKN 474
Cdd:TIGR02169 245 QLASLEEELEKLTEE----ISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV-KEKIGELEAEIASLERSIAEKE---RE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 475 KSDTMRELQQTQEDTFNKVA--EQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSE---KLNRIETSHEQ 549
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAeiEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAEtrdELKDYREKLEK 396
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568926841 550 LVRENSHFKTTLSRTQREQTCLLAACALMAGALCPLYSRSCALSTQRDFLQEQVNSLElfkLEIRTLAQALSAVDEKK 627
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE---WKLEQLAADLSKYEQEL 471
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
814-1014 |
8.15e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 8.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 814 AALQKQIFGFTQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQtqlnefkhsklithekfesacEELNNALLRE 893
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE---------------------YELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 894 QQAQMLLNEQAQQLQELNYRLELhssEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDA 973
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEE---ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568926841 974 ESALRMAAKDKecvANHMRTIENMLHKVRDQISLSRTAATR 1014
Cdd:COG1196 378 EEELEELAEEL---LEALRAAAELAAQLEELEEAEEALLER 415
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
820-985 |
8.59e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 8.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 820 IFGFT--QRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQTQLnefkhsklithekfeSACEELNNALLREQQAQ 897
Cdd:COG4913 603 VLGFDnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAL---------------QRLAEYSWDEIDVASAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 898 MLLNEQAQQLQELnyrlelhsseEADkNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESAL 977
Cdd:COG4913 668 REIAELEAELERL----------DAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736
|
....*...
gi 568926841 978 RMAAKDKE 985
Cdd:COG4913 737 EAAEDLAR 744
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
838-1005 |
8.73e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 8.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 838 RLEVTEYKRTVHEMKKELDKSQSLQTQLNEFKhsklithekfesacEELNNALLREQQAQMLLNEQAQQLQELNYRLELH 917
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELE--------------AELEELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 918 SSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESALRMAAKDKECVANHMRTIENM 997
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
....*...
gi 568926841 998 LHKVRDQI 1005
Cdd:COG1196 367 LLEAEAEL 374
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
61-244 |
9.24e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 9.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 61 AEQDSAVQSMQKKVEQLEAEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAhLESKfnSEII 140
Cdd:COG3883 19 QAKQKELSELQAELEAAQAE-------LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAE-IEER--REEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 141 QLRIRDL------EGALQV--------EKASQAEAV-----ADLEMIkNEFKEVESAYEREKQNTQESCAKLNLLEREYF 201
Cdd:COG3883 89 GERARALyrsggsVSYLDVllgsesfsDFLDRLSALskiadADADLL-EELKADKAELEAKKAELEAKLAELEALKAELE 167
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568926841 202 SQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKK 244
Cdd:COG3883 168 AAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
811-977 |
9.73e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 9.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 811 KSTAALQKQIFGFTQRLhaaeverRSLRLEVTEYKRTVHEMKKELDKSQS---LQTQLNEfkhskliTHEKFESACEELN 887
Cdd:PRK11281 80 EETEQLKQQLAQAPAKL-------RQAQAELEALKDDNDEETRETLSTLSlrqLESRLAQ-------TLDQLQNAQNDLA 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 888 --NALLREQQ-----AQMLLNEQAQQLQELNYRLELHSSEEADKN---QTLGEAVKSLSEAKMELRRKD-------QSLR 950
Cdd:PRK11281 146 eyNSQLVSLQtqperAQAALYANSQRLQQIRNLLKGGKVGGKALRpsqRVLLQAEQALLNAQNDLQRKSlegntqlQDLL 225
|
170 180
....*....|....*....|....*..
gi 568926841 951 QLNRHLTQLEQDkrRLEENIRDAESAL 977
Cdd:PRK11281 226 QKQRDYLTARIQ--RLEHQLQLLQEAI 250
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
296-641 |
1.22e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 296 RTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDK----LTEVHKELSHLRAKCADREALITSL 371
Cdd:TIGR04523 214 KSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKikkqLSEKQKELEQNNKKIKELEKQLNQL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 372 KVELQNVlhcwEKEKacaaqcESELQKLSQAFQKDSEEKLTflhtlyqhlvagcvlikqpegmldkfswselcaVLQENV 451
Cdd:TIGR04523 294 KSEISDL----NNQK------EQDWNKELKSELKNQEKKLE---------------------------------EIQNQI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 452 DALIADLNRANEKISHLEYICKNKSDTMRELQQTQEDTFNKVaEQIKAQESCWQKQKKELEFQYSELLLEVQRR----AQ 527
Cdd:TIGR04523 331 SQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEI-EKLKKENQSYKQEIKNLESQINDLESKIQNQeklnQQ 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 528 KFQEIAEKNSEKlNRIETSHEQLVRENSHFKTTLSRTQREQTcllaacalmagALCPLYSRscaLSTQRDFLQEQvnsLE 607
Cdd:TIGR04523 410 KDEQIKKLQQEK-ELLEKEIERLKETIIKNNSEIKDLTNQDS-----------VKELIIKN---LDNTRESLETQ---LK 471
|
330 340 350
....*....|....*....|....*....|....
gi 568926841 608 LFKLEIRTLAQALsavdEKKQEEAKTKKKTFKGL 641
Cdd:TIGR04523 472 VLSRSINKIKQNL----EQKQKELKSKEKELKKL 501
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
73-238 |
2.08e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 73 KVEQLEAEHMDCSDLLRRQTSELE----FSTQREERLRK--EFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRD 146
Cdd:pfam17380 376 RMRELERLQMERQQKNERVRQELEaarkVKILEEERQRKiqQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEE 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 147 LEGALQVEKASQAEA---VADLEMIKNEFKEVESAYEREKQNTQESCA-KLNLLEREyfSQNKKLNEEIEDQKKVIIDLS 222
Cdd:pfam17380 456 QERQQQVERLRQQEEerkRKKLELEKEKRDRKRAEEQRRKILEKELEErKQAMIEEE--RKRKLLEKEMEERQKAIYEEE 533
|
170
....*....|....*.
gi 568926841 223 KRLQYNEKSCGELQEE 238
Cdd:pfam17380 534 RRREAEEERRKQQEME 549
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
291-364 |
2.16e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.16e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568926841 291 LETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADR 364
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
825-985 |
2.88e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 825 QRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQTQLNEFKHsKLITHEKFESACEelnnALLREQQAQMLLNEQA 904
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELRE-ELEKLEKLLQLLP----LYQELEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 905 QQLQELNYRL------------------ELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRL 966
Cdd:COG4717 146 ERLEELEERLeelreleeeleeleaelaELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170
....*....|....*....
gi 568926841 967 EENIRDAESALRMAAKDKE 985
Cdd:COG4717 226 EEELEQLENELEAAALEER 244
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
180-408 |
3.19e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 180 EREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELvmakkhqaflvETCENNVRE 259
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEI-----------AEAEAEIEE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 260 LESILGSFSVSAQwtsgvhKDKDKPPSFSVVLETlrRTLTDYQNKLEDasneLNNINDAKEKTSNELDSTKQKIETHIKN 339
Cdd:COG3883 84 RREELGERARALY------RSGGSVSYLDVLLGS--ESFSDFLDRLSA----LSKIADADADLLEELKADKAELEAKKAE 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568926841 340 TKELQDKLTEVHKEL----SHLRAKCADREALITSLKVELQNVLHCWEKEKACAAQCESELQKLSQAFQKDSE 408
Cdd:COG3883 152 LEAKLAELEALKAELeaakAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
69-544 |
3.56e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 69 SMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLE 148
Cdd:TIGR04523 128 KLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLK 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 149 GALQVEKasqaEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNllereyfSQNKKLNEEIEDQKKVIIDLSKRlqyn 228
Cdd:TIGR04523 208 KKIQKNK----SLESQISELKKQNNQLKDNIEKKQQEINEKTTEIS-------NTQTQLNQLKDEQNKIKKQLSEK---- 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 229 ekscgelQEELVMAKKhqafLVETCENNVRELESILGSFSVSAQ--WTSGVHKDkdkppsfsvvletlrrtLTDYQNKLE 306
Cdd:TIGR04523 273 -------QKELEQNNK----KIKELEKQLNQLKSEISDLNNQKEqdWNKELKSE-----------------LKNQEKKLE 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 307 DASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHCWEKEK 386
Cdd:TIGR04523 325 EIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 387 ACAAQCESELQKLSQAFQKDSEEkltflhtlyqhlvagcvlikqpegmldkfswselcavlQENVDALIADLN----RAN 462
Cdd:TIGR04523 405 KLNQQKDEQIKKLQQEKELLEKE--------------------------------------IERLKETIIKNNseikDLT 446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 463 EKISHLEYICKNkSDTMRELQQTQEDTFNKvaeQIKAQESCWQKQKKELEFQYSELLL---EVQRRAQKFQEIAEKNSEK 539
Cdd:TIGR04523 447 NQDSVKELIIKN-LDNTRESLETQLKVLSR---SINKIKQNLEQKQKELKSKEKELKKlneEKKELEEKVKDLTKKISSL 522
|
....*
gi 568926841 540 LNRIE 544
Cdd:TIGR04523 523 KEKIE 527
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
180-410 |
3.75e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 180 EREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLvetcENNVRE 259
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL----RAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 260 LESILGSFSVSAQWTSGVHkdkdkPPSFSVVLETLRRTLTDYQNkLEDASNELNNINDAKEKTSNELDSTKQKIETHIKN 339
Cdd:COG4942 102 QKEELAELLRALYRLGRQP-----PLALLLSPEDFLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568926841 340 TKELQDKLTEVHKELSHLRakcADREALITSLKVELQNVlhcwEKEKACAAQCESELQKLSQAFQKDSEEK 410
Cdd:COG4942 176 LEALLAELEEERAALEALK---AERQKLLARLEKELAEL----AAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
820-1006 |
3.80e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 820 IFGFTQRLHAAEVERRSLRLEVTEYKRTVHEMKKELD----KSQSLQTQLNEFKHSKLITHEKFESACEELNNALLREQQ 895
Cdd:TIGR02169 655 MTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSslqsELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 896 AQMLLNEQAQQLQELNYRLELHSSEEADKNQTLGEAVKSLSEAKMEL-----RRKDQSLRQLNRHLTQLEQDKRRLEENI 970
Cdd:TIGR02169 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALndleaRLSHSRIPEIQAELSKLEEEVSRIEARL 814
|
170 180 190
....*....|....*....|....*....|....*.
gi 568926841 971 RDAESALRMAAKDKECVANHMRTIENMLHKVRDQIS 1006
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
814-974 |
4.01e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 814 AALQKQIFGFTQRLHAAEVERRSLRLEVTEYKRtVHEMKKELDKSQSLQTQLNEFkhsklithekfESACEELNNALLRE 893
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREELEKLEK-LLQLLPLYQELEALEAELAEL-----------PERLEELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 894 QQAQMLLNEQAQQLQELNYRL-ELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRD 972
Cdd:COG4717 159 RELEEELEELEAELAELQEELeELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA 238
|
..
gi 568926841 973 AE 974
Cdd:COG4717 239 AA 240
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
814-985 |
6.42e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 6.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 814 AALQKQIFGFTQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQS----LQTQLNEFKHSKLITHEKFESACEELNNA 889
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQelaaLEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 890 LL------REQQAQMLLNeqAQQLQELNYRLELHSS-EEADKNQ--TLGEAVKSLSEAKMELRRKDQSLRQLnrhLTQLE 960
Cdd:COG4942 110 LRalyrlgRQPPLALLLS--PEDFLDAVRRLQYLKYlAPARREQaeELRADLAELAALRAELEAERAELEAL---LAELE 184
|
170 180
....*....|....*....|....*
gi 568926841 961 QDKRRLEENIRDAESALRMAAKDKE 985
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELA 209
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
60-385 |
6.73e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 6.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 60 SAEQDSAVQSMQKKVEQLEAEHMDCSDLlRRQTSELEFSTQREERL--RKEFEATTLRVR---KLEE------------N 122
Cdd:pfam15921 467 TAQLESTKEMLRKVVEELTAKKMTLESS-ERTVSDLTASLQEKERAieATNAEITKLRSRvdlKLQElqhlknegdhlrN 545
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 123 IEAE-RAAHLESKFNSEIIQLRIRDLE-------------GALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQE 188
Cdd:pfam15921 546 VQTEcEALKLQMAEKDKVIEILRQQIEnmtqlvgqhgrtaGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEA 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 189 SCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFS 268
Cdd:pfam15921 626 RVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQ 705
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 269 VSAQWTSGVHKDKDKPPSFSVVLE-------TLRRTLTD-YQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNT 340
Cdd:pfam15921 706 SELEQTRNTLKSMEGSDGHAMKVAmgmqkqiTAKRGQIDaLQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEK 785
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 568926841 341 KELQDKLTEVHKELSHLRAKCADREALI--TSLK-VELQNVLHCWEKE 385
Cdd:pfam15921 786 NKMAGELEVLRSQERRLKEKVANMEVALdkASLQfAECQDIIQRQEQE 833
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
66-402 |
7.90e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 7.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 66 AVQSMQKKVEQLEAEHmdcSDLLrrqtSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAhlESKFNSEIIQLRir 145
Cdd:PRK02224 280 EVRDLRERLEELEEER---DDLL----AEAGLDDADAEAVEARREELEDRDEELRDRLEECRVA--AQAHNEEAESLR-- 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 146 dlegalqvekasqaEAVADLEMIKNEFKEVESAYEREKQNTQEScaklnLLEREyfSQNKKLNEEIEDQKKVIIDLSKRL 225
Cdd:PRK02224 349 --------------EDADDLEERAEELREEAAELESELEEAREA-----VEDRR--EEIEELEEEIEELRERFGDAPVDL 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 226 QYNEKSCGELQEELVMAKKHQAFL---VETCENNVRELESIL--------GSFSVSAQWTSGVHKDKDKPPSFSVVLETL 294
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELeatLRTARERVEEAEALLeagkcpecGQPVEGSPHVETIEEDRERVEELEAELEDL 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 295 RRTLTDYQNKLEDASnELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVE 374
Cdd:PRK02224 488 EEEVEEVEERLERAE-DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEE 566
|
330 340
....*....|....*....|....*...
gi 568926841 375 LqnvlhcwEKEKACAAQCESELQKLSQA 402
Cdd:PRK02224 567 A-------EEAREEVAELNSKLAELKER 587
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
61-251 |
8.53e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 8.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 61 AEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENI----------EAERAAH 130
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELeeleeeleeaEEELEEA 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 131 LESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEE 210
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568926841 211 IEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVE 251
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
54-634 |
9.44e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.10 E-value: 9.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 54 SGFKRGSAEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQreeRLRKEF-EATTLRVRKLEEnieaeraahLE 132
Cdd:pfam15921 281 TGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVS---QLRSELrEAKRMYEDKIEE---------LE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 133 SKF---NSEIIQLRIrdlegalQVEKASQAEAVADLEMIknefKEVESAYEREKQNTQESCAKLNLLEREYFSQNK--KL 207
Cdd:pfam15921 349 KQLvlaNSELTEART-------ERDQFSQESGNLDDQLQ----KLLADLHKREKELSLEKEQNKRLWDRDTGNSITidHL 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 208 NEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESIlgsfsvsaqwTSGVHKDKDKPPSF 287
Cdd:pfam15921 418 RRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLEST----------KEMLRKVVEELTAK 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 288 SVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIEtHIKNTkelQDKLTEVHKELSHLRAKCADREAL 367
Cdd:pfam15921 488 KMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQ-HLKNE---GDHLRNVQTECEALKLQMAEKDKV 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 368 ITSLKVELQNVLHCWEKEKACA-------AQCESELQKLSQAFQ--------KDSE-------------EKLTFLHTLYQ 419
Cdd:pfam15921 564 IEILRQQIENMTQLVGQHGRTAgamqvekAQLEKEINDRRLELQefkilkdkKDAKirelearvsdlelEKVKLVNAGSE 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 420 HLVAGCVLIKQPEGMLDKFSWSElcavlqenvdaliADLNRANEKISHLEYICKNKSDTMrelqqtqEDTFNKVAEQIKA 499
Cdd:pfam15921 644 RLRAVKDIKQERDQLLNEVKTSR-------------NELNSLSEDYEVLKRNFRNKSEEM-------ETTTNKLKMQLKS 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926841 500 QESCWQKQKKELEFQYS------ELLLEVQRRAQKFQEIAEKNSEKLNRIETSHEQLVRENSHFKTTLSRTQREQTCLLA 573
Cdd:pfam15921 704 AQSELEQTRNTLKSMEGsdghamKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVAT 783
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568926841 574 ACALMAGALcplysrsCALSTQRDFLQEQVNSLELfKLEIRTL--AQALSAVDEKKQEEAKTK 634
Cdd:pfam15921 784 EKNKMAGEL-------EVLRSQERRLKEKVANMEV-ALDKASLqfAECQDIIQRQEQESVRLK 838
|
|
| |
