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Conserved domains on  [gi|569425846|gb|ETO31076|]
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hypothetical protein RFI_06043, partial [Reticulomyxa filosa]

Protein Classification

GAS domain-containing protein( domain architecture ID 708505)

GAS (growth-arrest specific micro-tubule binding) domain-containing protein similar to Drosophila melanogaster hermaphrodite

Gene Ontology:  GO:0031514|GO:0048870

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GAS super family cl25894
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ...
68-264 1.47e-15

Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.


The actual alignment was detected with superfamily member pfam13851:

Pssm-ID: 464001 [Multi-domain]  Cd Length: 200  Bit Score: 74.17  E-value: 1.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569425846   68 DLINNHQNAFAKMRAYYNAITKDNLDLITALKNELEELEEKAKSHENRYQQISIENKKLSVPLEQVQQQVEQFRKKLTNY 147
Cdd:pfam13851   1 ELMKNHEKAFNEIKNYYNDITRNNLELIKSLKEEIAELKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEELRKQLENY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569425846  148 HK---SLKASKTRLSVLDERLRDTISDFENLKHEFEALQQSKKELQKSHEDDVNTMTDDFEKRKTDQIQKILLLQQQTDQ 224
Cdd:pfam13851  81 EKdkqSLKNLKARLKVLEKELKDLKWEHEVLEQRFEKVERERDELYDKFEAAIQDVQQKTGLKNLLLEKKLQALGETLEK 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 569425846  225 QEKRVDELVKQQNIDTLTLSNWSEELKQTLKDKNQEIEYL 264
Cdd:pfam13851 161 KEAQLNEVLAAANLDPDALQAVTEKLEDVLESKNQLIKDL 200
 
Name Accession Description Interval E-value
GAS pfam13851
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ...
68-264 1.47e-15

Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.


Pssm-ID: 464001 [Multi-domain]  Cd Length: 200  Bit Score: 74.17  E-value: 1.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569425846   68 DLINNHQNAFAKMRAYYNAITKDNLDLITALKNELEELEEKAKSHENRYQQISIENKKLSVPLEQVQQQVEQFRKKLTNY 147
Cdd:pfam13851   1 ELMKNHEKAFNEIKNYYNDITRNNLELIKSLKEEIAELKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEELRKQLENY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569425846  148 HK---SLKASKTRLSVLDERLRDTISDFENLKHEFEALQQSKKELQKSHEDDVNTMTDDFEKRKTDQIQKILLLQQQTDQ 224
Cdd:pfam13851  81 EKdkqSLKNLKARLKVLEKELKDLKWEHEVLEQRFEKVERERDELYDKFEAAIQDVQQKTGLKNLLLEKKLQALGETLEK 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 569425846  225 QEKRVDELVKQQNIDTLTLSNWSEELKQTLKDKNQEIEYL 264
Cdd:pfam13851 161 KEAQLNEVLAAANLDPDALQAVTEKLEDVLESKNQLIKDL 200
 
Name Accession Description Interval E-value
GAS pfam13851
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ...
68-264 1.47e-15

Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.


Pssm-ID: 464001 [Multi-domain]  Cd Length: 200  Bit Score: 74.17  E-value: 1.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569425846   68 DLINNHQNAFAKMRAYYNAITKDNLDLITALKNELEELEEKAKSHENRYQQISIENKKLSVPLEQVQQQVEQFRKKLTNY 147
Cdd:pfam13851   1 ELMKNHEKAFNEIKNYYNDITRNNLELIKSLKEEIAELKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEELRKQLENY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569425846  148 HK---SLKASKTRLSVLDERLRDTISDFENLKHEFEALQQSKKELQKSHEDDVNTMTDDFEKRKTDQIQKILLLQQQTDQ 224
Cdd:pfam13851  81 EKdkqSLKNLKARLKVLEKELKDLKWEHEVLEQRFEKVERERDELYDKFEAAIQDVQQKTGLKNLLLEKKLQALGETLEK 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 569425846  225 QEKRVDELVKQQNIDTLTLSNWSEELKQTLKDKNQEIEYL 264
Cdd:pfam13851 161 KEAQLNEVLAAANLDPDALQAVTEKLEDVLESKNQLIKDL 200
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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