|
Name |
Accession |
Description |
Interval |
E-value |
| ND4 |
MTH00124 |
NADH dehydrogenase subunit 4; Provisional |
1-457 |
0e+00 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214427 [Multi-domain] Cd Length: 457 Bit Score: 639.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 1 MLKILIPTIMLIPTSLFSK-KWLWIMTSNYSILIALVSLMWLKLdSVSGWSYTNLLMGVDQISAPLLTLSCWLLPLMILA 79
Cdd:MTH00124 1 MLKIILPTIMLIPTTLLSKpKFLWTNTTTYSLLIALLSLQWLKP-PYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 80 SQNHMRHEPMQRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLP 159
Cdd:MTH00124 80 SQNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 160 LLIALLTINKNISSTSIFTLnFMYQNYLNLSTTEILWWAGCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKL 239
Cdd:MTH00124 160 LLIAILYLHNQTGTLSLPML-QLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 240 GGFGLLRISIILTPITTMMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIA 319
Cdd:MTH00124 239 GGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIA 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 320 HGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITGT 399
Cdd:MTH00124 319 HGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGL 398
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 57544859 400 GTLITAAYSLYMFLMTQRGPTPKHMI-LDPTYTREHLLISLHMIPSLLLILKPELIWGW 457
Cdd:MTH00124 399 ATLITASYTLYMFLSTQRGTLPTHITtIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
|
|
| ND4 |
MTH00068 |
NADH dehydrogenase subunit 4; Provisional |
1-458 |
0e+00 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214417 [Multi-domain] Cd Length: 458 Bit Score: 612.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 1 MLKILIPTIMLIPTSLFS-KKWLWIMTSNYSILIALVSLMWLKLDSvSGWSYTNLLMGVDQISAPLLTLSCWLLPLMILA 79
Cdd:MTH00068 1 MLKIIIPTLMLLPTTWLSpKKWLWTLTTTNSLIIAFLSLMWFNLPS-ETMNFTNKYFGIDQISSPLLILTCWLLPLMILA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 80 SQNHMRHEPMQRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLP 159
Cdd:MTH00068 80 SQNHLKNEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 160 LLIALLTINKNISSTSIFTLNFMYQNYLNLSTTEIlWWAGCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKL 239
Cdd:MTH00068 160 LLIALLILQNSLGSLSLILLELMSPMQLMTYTNKI-WWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 240 GGFGLLRISIILTPITTMMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIA 319
Cdd:MTH00068 239 GGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMIS 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 320 HGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITGT 399
Cdd:MTH00068 319 HGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGL 398
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 400 GTLITAAYSLYMFLMTQRGPTPKHM-ILDPTYTREHLLISLHMIPSLLLILKPELIWGWF 458
Cdd:MTH00068 399 GTLITAAYTLYMFLMTQRGPLPNHLkTLFPTYTREHLLLALHILPMLLLILKPELISGMF 458
|
|
| ND4 |
MTH00110 |
NADH dehydrogenase subunit 4; Provisional |
1-459 |
0e+00 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177172 [Multi-domain] Cd Length: 459 Bit Score: 590.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 1 MLKILIPTIMLIPTSLFSKK-WLWIMTSNYSILIALVSLMWLKLDSVSGWSYtNLLMGVDQISAPLLTLSCWLLPLMILA 79
Cdd:MTH00110 1 MLKIIIPTIMLIPLTWLSKNnMIWINTTTYSLLISLISLLLLNQPNDNSLNF-SLLFFSDSLSTPLLILTTWLLPLMLMA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 80 SQNHMRHEPMQRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLP 159
Cdd:MTH00110 80 SQHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 160 LLIALLTINKNISSTSIFTLNFMYQNYLNLSTTEILWWAgCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKL 239
Cdd:MTH00110 160 LLVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLA-CMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 240 GGFGLLRISIILTPITTMMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIA 319
Cdd:MTH00110 239 GGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIA 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 320 HGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITGT 399
Cdd:MTH00110 319 HGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGL 398
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 57544859 400 GTLITAAYSLYMFLMTQRGPTPKHMI-LDPTYTREHLLISLHMIPSLLLILKPELIWGWFY 459
Cdd:MTH00110 399 NMLITALYSLYMLITTQRGKLTHHINnIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
|
|
| ND4 |
MTH00127 |
NADH dehydrogenase subunit 4; Provisional |
1-458 |
0e+00 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177186 [Multi-domain] Cd Length: 459 Bit Score: 576.52 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 1 MLKILIPTIMLIPTS-LFSKKWLWIMTSNYSILIALVSLMWLKLDSVSGWSYTNLLMGVDQISAPLLTLSCWLLPLMILA 79
Cdd:MTH00127 1 MLKILIPTLMLIPTTwLTPAKWLWTTTLAHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 80 SQNHMRHEPMQRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLP 159
Cdd:MTH00127 81 SQNHTAPEPINRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 160 LLIALLTINKNISSTSIFTLNFMYQNYLNlSTTEILWWAGCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKL 239
Cdd:MTH00127 161 LLVALLLLQNSTGTLSMLTLQYSQPLQLS-SWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 240 GGFGLLRISIILTPITTMMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIA 319
Cdd:MTH00127 240 GGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 320 HGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITGT 399
Cdd:MTH00127 320 HGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGL 399
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 400 GTLITAAYSLYMFLMTQRGPTPKHMI-LDPTYTREHLLISLHMIPSLLLILKPELIWGWF 458
Cdd:MTH00127 400 GTLITAGYSLYMFLMTQRGPLPDHIIaLNPSHTREHLLMALHLLPLLLLILKPELIWGWT 459
|
|
| ND4 |
MTH00206 |
NADH dehydrogenase subunit 4; Provisional |
3-454 |
1.19e-169 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214458 [Multi-domain] Cd Length: 450 Bit Score: 484.44 E-value: 1.19e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 3 KILIPTIMLIPTSLFS-KKWLWIMTSNYSILIALVSLMWLKLDSVSGWSYTNLLMGVDQISAPLLTLSCWLLPLMILASQ 81
Cdd:MTH00206 1 KILIPLIMLLLMTILSkKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSNLYLSYDPLSSPLVILSCWLLPLMFLASQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 82 NHMRHEPMQRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLPLL 161
Cdd:MTH00206 81 NHMKNEPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 162 IALLTINKNISSTSIFtlnfMYQNYLNLSTTEILWWAGCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGG 241
Cdd:MTH00206 161 IALLFLQNSLGSLSLY----ILYFSKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 242 FGLLRISIILTPITTMMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHG 321
Cdd:MTH00206 237 YGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHG 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 322 LVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITGTGT 401
Cdd:MTH00206 317 LVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGF 396
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 57544859 402 LITAAYSLYMFLMTQRGPTPKH-MILDPTYTREHLLISLHMIPSLLLILKPELI 454
Cdd:MTH00206 397 LFTAIYSLYMFVMTQHGKTPNHlLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
|
|
| ND4 |
MTH00044 |
NADH dehydrogenase subunit 4; Validated |
1-454 |
3.52e-148 |
|
NADH dehydrogenase subunit 4; Validated
Pssm-ID: 214411 [Multi-domain] Cd Length: 458 Bit Score: 430.17 E-value: 3.52e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 1 MLKILIPTIMLIPTSLFS-KKWLWIMTSNYSILIALVSLMWLKLDSVSGWSYTNLLMGVDQISAPLLTLSCWLLPLMILA 79
Cdd:MTH00044 1 MITLILLSLGIAITSWIVpKNKLWPISISQSSLISLLSLFLLNNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 80 SQNHMRHEPMQRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLP 159
Cdd:MTH00044 81 SINHLSNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 160 LLIALLTINKNISSTSIFTLNFMYQNYLNLSTTEIlWWAGCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKL 239
Cdd:MTH00044 161 LLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSI-WWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 240 GGFGLLR-ISIILTPITTMMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMI 318
Cdd:MTH00044 240 GGYGLIRlINLFSLPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 319 AHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITG 398
Cdd:MTH00044 320 AHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIG 399
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 57544859 399 TGTLITAAYSLYMFLMTQRGPTPK-HMILDPTYTREHLLISLHMIPSLLLILKPELI 454
Cdd:MTH00044 400 LATVFGAIYSLLIYQLTNSGSFPSwISNVSPISSREHLLIFLHLLPLILIIINPNII 456
|
|
| ND4 |
MTH00163 |
NADH dehydrogenase subunit 4; Provisional |
1-457 |
5.35e-118 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214443 [Multi-domain] Cd Length: 445 Bit Score: 352.53 E-value: 5.35e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 1 MLKILIPTIMLIPTSLFSKKWLWIMTSNYSILIalvsLMWLKLDSVSGWSYTNLLMGVDQISAPLLTLSCWLLPLMILAS 80
Cdd:MTH00163 1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSF----LFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 81 QNHMRHEPMQrqQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLPL 160
Cdd:MTH00163 77 ESVYKKNNYS--NLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 161 LIALLTINKNISSTSIFTLNFMYQNYlnlstteILWWAGCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
Cdd:MTH00163 155 LVGIFYLYNNSGSLSFFLLNFFGSLN-------FLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLG 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 241 GFGLLRISIILTPITTMMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAH 320
Cdd:MTH00163 228 GYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGH 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 321 GLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITGTG 400
Cdd:MTH00163 308 GLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLL 387
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 57544859 401 TLITAAYSLYMFLMTQRGPTPKHMI-LDPTYTREHLLISLHMIPSLLLILKPELIWGW 457
Cdd:MTH00163 388 SFFSAAYSLYLYSYSQHGKYYSGLYsCSSGKVREYLLLFLHWLPLNLLILKSDLFMLW 445
|
|
| ND4 |
MTH00150 |
NADH dehydrogenase subunit 4; Provisional |
45-458 |
2.07e-114 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214435 [Multi-domain] Cd Length: 417 Bit Score: 342.59 E-value: 2.07e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 45 SVSGWSYTNLLMGVDQISAPLLTLSCWLLPLMILASQNhmRHEPMQRQQTYIILLTTLQISLILTFSATEFIFFYIMFEL 124
Cdd:MTH00150 9 SFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQK--SVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 125 TLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLPLLIALLTINKNISSTSIFTLNFMYQNYLNLStteiLWWAGCIIAF 204
Cdd:MTH00150 87 SLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSMG----LWGLLVFLAF 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 205 LVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAYPFIILALWGIIMTSSICLRQLDLK 284
Cdd:MTH00150 163 LVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVK 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 285 SLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTS 364
Cdd:MTH00150 243 SLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFC 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 365 LMNLALPPSINLMAELTIMTSLFNWSSFTIIITGTGTLITAAYSLYMFLMTQRGPTPKHMIL-DPTYTREHLLISLHMIP 443
Cdd:MTH00150 323 IINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPfNELKSSEMLLLLLHWVP 402
|
410
....*....|....*
gi 57544859 444 SLLLILKPELIWGWF 458
Cdd:MTH00150 403 LLLLILKSDLLFMWI 417
|
|
| ND4 |
MTH00014 |
NADH dehydrogenase subunit 4; Validated |
1-457 |
5.20e-107 |
|
NADH dehydrogenase subunit 4; Validated
Pssm-ID: 214399 [Multi-domain] Cd Length: 452 Bit Score: 324.77 E-value: 5.20e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 1 MLKILIPTIMLIPTSLFSKKWLWIMTSNYSILIALVSLMWLKLDSVSgWSYTNLLMGVDQISAPLLTLSCWLLPLMILAS 80
Cdd:MTH00014 1 MLKLIMPLISLLLLPLIKYPWSWALTFSTLLLLSLFTLLNLYPMSAP-YSMFTESLSSDMLSAPLITLTLWITALMILAS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 81 QNHMRHEpmQRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLPL 160
Cdd:MTH00014 80 FKIFQNN--KAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 161 LIALLTINKNISSTSIFTLNFMYQNYLNLStteiLWWAGCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
Cdd:MTH00014 158 LMSILLIFYTNNSLSMLMSSMEPPSIYLMN----LWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 241 GFGLLRISIILTPITTMMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAH 320
Cdd:MTH00014 234 GYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAH 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 321 GLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITGTG 400
Cdd:MTH00014 314 GLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAIT 393
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 57544859 401 TLITAAYSLYMFLMTQRGPTPKHM-ILDPTYTREHLLISLHMIPSLLLILKPELIWGW 457
Cdd:MTH00014 394 SFLAAAYSLFLYTSTQHGSPPSFMnPLNLFTPRNHTLMTLHLVPLFILILKPDLITNW 451
|
|
| ND4 |
MTH00205 |
NADH dehydrogenase subunit 4; Provisional |
9-454 |
6.60e-103 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214457 [Multi-domain] Cd Length: 448 Bit Score: 314.22 E-value: 6.60e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 9 IMLIPTSLFSKKWLWIMTSNYSILIALVSLMWLKLdSVSGWSYTNLLMGVDQISAPLLTLSCWLLPLMILASQNHMrhEP 88
Cdd:MTH00205 7 FSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSN-SFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKVF--KS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 89 MQRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLPLLIALLTIN 168
Cdd:MTH00205 84 NKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLFFLN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 169 KNISSTSIFTLNFMYQNYLNLStteiLWWAGCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRIS 248
Cdd:MTH00205 164 SLNFSLSMFFNFPLNFSDFYLF----LYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRIT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 249 IILTPITTMMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLF 328
Cdd:MTH00205 240 SMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMF 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 329 CLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITGTGTLITAAYS 408
Cdd:MTH00205 320 ALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYS 399
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 57544859 409 LYMFLMTQRG-PTPKHMILDPTYTREHLLISLHMIPSLLLILKPELI 454
Cdd:MTH00205 400 LYLYSQSQHGkVSSQISSFLAISEREYYILILHWFPLNILILKLKIF 446
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
53-424 |
1.63e-76 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 246.92 E-value: 1.63e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 53 NLLMGVDQISAPLLTLSCWLLPLMILASQNHMRHepmqRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLII 132
Cdd:COG1008 75 SYHLGVDGISLPLVLLTALLTPLAILASWNEIKK----RPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFL 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 133 ITRWGNqAERLKAGTYFLFYTLMGSLPLLIALLTInknISSTSIFTLNFMYQNYLNLS-TTEILWWAGCIIAFLVKMPLY 211
Cdd:COG1008 151 IGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILAL---YFLAGALTFDIAELAAAPLPlTAQLLLFLAFFIAFAVKVPMF 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 212 GVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTM-MAYPFIILALWGIIMTSSICLRQLDLKSLIAYS 290
Cdd:COG1008 227 PFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEASAyFAPLLAALGVIGIIYGALVALAQTDLKRLIAYS 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 291 SVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLAL 370
Cdd:COG1008 307 SVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGL 386
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 57544859 371 PPSINLMAELTIMTSLFNWSSFTIIITGTGTLITAAYSLYMFLMTQRGPTPKHM 424
Cdd:COG1008 387 PGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEEL 440
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
56-422 |
2.04e-69 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 228.93 E-value: 2.04e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 56 MGVDQISAPLLTLSCWLLPLMILASQNHMRHepmqRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITR 135
Cdd:PRK05846 78 LGVDGISLLLVVLTALLTPLAVLASWEEIKK----RVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGV 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 136 WGnQAERLKAGTYFLFYTLMGSLPLLIALLTInknISSTSIFTLNFMYQNYLNLS---TTEILWWAGCIIAFLVKMPLYG 212
Cdd:PRK05846 154 WG-GKNRIYAATKFFLYTLLGSLLMLVAIIYL---VVVYYNATGTFDIADLLNLPlppGVQYWLFLAFFIAFAVKMPMFP 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 213 VHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTP-ITTMMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSS 291
Cdd:PRK05846 230 LHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPdASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSS 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 292 VSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALP 371
Cdd:PRK05846 310 ISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLP 389
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 57544859 372 PSINLMAELTIMTSLFNWSSFTIIITGTGTLITAAYSLYMFLMTQRGPTPK 422
Cdd:PRK05846 390 GTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPVKN 440
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
56-459 |
6.50e-68 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 224.43 E-value: 6.50e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 56 MGVDQISAPLLTLSCWLLPLMILASQNHMRHepmqRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITR 135
Cdd:TIGR01972 73 LGVDGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGV 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 136 WGNQaERLKAGTYFLFYTLMGSLPLLIALLTINknISSTSIFTLNFMYQNYLNLSTTEILWWAgCIIAFLVKMPLYGVHL 215
Cdd:TIGR01972 149 WGGP-NRIYAAMKFFLYTLAGSLLMLLAILGLY--FLGGGTFDLLELLNLPLPFGVQTWLFLA-FFIAFAVKVPLFPLHT 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 216 WLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITT-MMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSH 294
Cdd:TIGR01972 225 WLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASlYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 295 MGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSI 374
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTS 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 375 NLMAELTIMTSLFNWSSFTIIITGTGTLITAAYSLYMFLMTQRGPTPKH--MILDPTYTREHLLISLHMIPSLLLILKPE 452
Cdd:TIGR01972 385 GFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSNPevAEFPDLNGREIAVLAPLVVLILFLGLYPN 464
|
....*..
gi 57544859 453 LIWGWFY 459
Cdd:TIGR01972 465 PLLDLTE 471
|
|
| ND4 |
MTH00204 |
NADH dehydrogenase subunit 4; Provisional |
53-412 |
1.36e-64 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 164750 [Multi-domain] Cd Length: 485 Bit Score: 215.70 E-value: 1.36e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 53 NLLMGVDQISAPLLTLSCWLLPLMILASQNHMRHepmqRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLII 132
Cdd:MTH00204 76 PLVFAVDGVSLFFILLTTLLIPICILISWKSIKF----LFKEFLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 133 ITRWGNQAERLKAGTYFLFYTLMGSLPLLIALLTINKNISSTSiftlnfmYQNYLNL---STTEILWWAGCIIAFLVKMP 209
Cdd:MTH00204 152 IGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTD-------YQILLNIklpLSIQKWLLVGFFLSLAVKIP 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 210 LYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAYPFII-LALWGIIMTSSICLRQLDLKSLIA 288
Cdd:MTH00204 225 QIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIVmLSVIAVIYGSLTTCRQVDFKRLIA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 289 YSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNL 368
Cdd:MTH00204 305 YSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANM 384
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 57544859 369 ALPPSINLMAELTIMTSLFNWSSFTIIITGTGTLITAAYSLYMF 412
Cdd:MTH00204 385 GFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
|
|
| ND4 |
MTH00217 |
NADH dehydrogenase subunit 4; Provisional |
51-412 |
1.04e-60 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214462 [Multi-domain] Cd Length: 482 Bit Score: 205.67 E-value: 1.04e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 51 YTNLLMGVDQISAPLLTLSCWLLPLMILASQNHMRHepmqRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTL 130
Cdd:MTH00217 71 FGPVVFAVDGISIFFLILTALLTPICILISWNSIKF----LIKEFLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMF 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 131 IIITRWGNQAERLKAGTYFLFYTLMGSLPLLIALLTINKNISSTSIFTL-NFMYQNYLnlsttEILWWAGCIIAFLVKMP 209
Cdd:MTH00217 147 LIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQALcCLKIEKEL-----QYFIFLGFFLSLAIKIP 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 210 LYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAYPFI-ILALWGIIMTSSICLRQLDLKSLIA 288
Cdd:MTH00217 222 KIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIqTLSLLAIIYGSLTTCRQVDLKRIIA 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 289 YSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNL 368
Cdd:MTH00217 302 YSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANA 381
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 57544859 369 ALPPSINLMAELTIMTSLFNWSSFTIIITGTGTLITAAYSLYMF 412
Cdd:MTH00217 382 SIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
112-401 |
5.88e-57 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 190.22 E-value: 5.88e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 112 ATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLPLLIALLTINKNISSTSIFTLNFMYQNYLNLST 191
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 192 TEILWWAgCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAYPFIILALWGII 271
Cdd:pfam00361 81 LLLLFLL-ILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISML 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 272 MTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLA-NTSYERIHSRTMILIRGLQ 350
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLA 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 57544859 351 IILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITGTGT 401
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
54-410 |
6.18e-57 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 196.30 E-value: 6.18e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 54 LLMGVDQISAPLLTLSCWLLPLMILASQNHMRHepmqRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIII 133
Cdd:MTH00226 96 LVFAVDGISIYFIILTGFIVPCSILISWHSVKY----LTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLIL 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 134 TRWGNQAERLKAGTYFLFYTLMGSLPLLIALLTInKNISSTSIFtLNFMYQNYLNLSTTEILWWAGCIIAFLVKMPLYGV 213
Cdd:MTH00226 172 GIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSL-YNIHGTTDY-LTLASCSHVVSEQTQKWIFLGIFLAMAVKIPIFPF 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 214 HLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAYPFII-LALWGIIMTSSICLRQLDLKSLIAYSSV 292
Cdd:MTH00226 250 HIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQNLAPAVIaMGIVGIVYGSFATCRQIDVKRLVAYSSV 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 293 SHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPP 372
Cdd:MTH00226 330 AHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPP 409
|
330 340 350
....*....|....*....|....*....|....*...
gi 57544859 373 SINLMAELTIMTSLFNWSSFTIIITGTGTLITAAYSLY 410
Cdd:MTH00226 410 SGNFIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
56-411 |
7.98e-46 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 165.98 E-value: 7.98e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 56 MGVDQISAPLLTLSCWLLPLMILASQNhMRHEPmqrqQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITR 135
Cdd:PRK12561 55 LGVDGLSMPLVLLSGLITTLSIFASWK-VTRKP----RLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISI 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 136 WGNQaERLKAGTYFLFYTLMGSLPLLIALLTINkniSSTSIFTLNFMYQNYLNLSTT-EILWWAGCIIAFLVKMPLYGVH 214
Cdd:PRK12561 130 WGGQ-KRLYAATKFILYTALASIFILVAGLALA---LSGDTFTFDLAELGAKSYPLAlELLLYAGFLIAFGVKLPIFPLH 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 215 LWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAYP-FIILALWGIIMTSSICLRQLDLKSLIAYSSVS 293
Cdd:PRK12561 206 TWLPDAHGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPaLAILGVVNIIYGALNAFAQDNVKRRLAYSSVS 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 294 HMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPS 373
Cdd:PRK12561 286 HMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGM 365
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 57544859 374 INLMAELTIM---------TSLFNwsSFTIIITGTGTLITAAYSLYM 411
Cdd:PRK12561 366 SGFVSELTVFlgitssdvySSTFR--TITILLAAVGLILTPIYLLSM 410
|
|
| ndhD |
CHL00011 |
NADH dehydrogenase subunit 4 |
110-411 |
1.28e-38 |
|
NADH dehydrogenase subunit 4
Pssm-ID: 176954 [Multi-domain] Cd Length: 498 Bit Score: 146.24 E-value: 1.28e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 110 FSATEFIFFYIMFELTLIPTLIIITRWGNQaERLKAGTYFLFYTLMGSLPLLIALLTINknISSTSIFTLNF---MYQNY 186
Cdd:CHL00011 129 FSSRDLLLFFIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGMG--LYGSNEPTLNFetlANQSY 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 187 -LNLsttEILWWAGCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAYPF-II 264
Cdd:CHL00011 206 pVAL---EILFYIGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWlVI 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 265 LALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIhsRTMI 344
Cdd:CHL00011 283 VGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI--RLVY 360
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 57544859 345 L--IRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELT----IMTSLFNWSSFTIIIT---GTGTLITAAYSLYM 411
Cdd:CHL00011 361 LdeMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIvffgIITSQKYLLMPKILITfvmAIGMILTPIYLLSM 436
|
|
| ND4 |
MTH00094 |
NADH dehydrogenase subunit 4; Provisional |
96-410 |
9.82e-38 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177157 [Multi-domain] Cd Length: 403 Bit Score: 141.97 E-value: 9.82e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 96 IILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLPLLIalltinknISSTS 175
Cdd:MTH00094 65 LILSNLLILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLF--------VYLKN 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 176 IFTLNFMYQNYLNLSTTEILwwagCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPIt 255
Cdd:MTH00094 137 FFFFSLCYFDFFLSWEMFFI----LSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFV- 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 256 tmMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSY 335
Cdd:MTH00094 212 --YNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFY 289
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 57544859 336 ERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITGTGTLITAAYSLY 410
Cdd:MTH00094 290 HISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLF 364
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
58-416 |
1.97e-36 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 138.74 E-value: 1.97e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 58 VDQISAPLLTLSCWLLPLMILASQNHMRHEpmQRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITrWG 137
Cdd:COG0651 74 ADRLSALFLLLTALVALAVLLYSIGYMRHE--RRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVA-LG 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 138 NQAERLKAGTYFLFYTLMGSLPLLIALLTINKNISstsifTLNF--MYQNYLNLSTTEILW-WAGCIIAFLVKMPLYGVH 214
Cdd:COG0651 151 GTKEALRAGLKYLILNLVGSALFLLGVGLLYGATG-----TLNMadLAARLAELDPGLLLAaFALLLVGFGIKAALFPLH 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 215 LWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIIL--TPITTMMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSV 292
Cdd:COG0651 226 FWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLfgADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSV 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 293 SHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPP 372
Cdd:COG0651 306 SQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPP 385
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 57544859 373 SINLMAELTIMTSLFNWSSFTIIITG-TGTLITAAYSLYMFLMTQ 416
Cdd:COG0651 386 LSGFVSKWLLLQAALEAGAWLLAAVLlLSSLLTLAYFVRIFGRAQ 430
|
|
| PRK02546 |
PRK02546 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
57-454 |
8.39e-35 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 235050 [Multi-domain] Cd Length: 525 Bit Score: 135.99 E-value: 8.39e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 57 GVDQISAPLLTLSCWLLPLMILASQnhmrhePMQ-RQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITR 135
Cdd:PRK02546 84 GADGLSMPLILLTGFITTLAVLAAW------PVTfKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAI 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 136 WGNQaERLKAGTYFLFYTLMGSLPLLIALLTINKNISSTSIFTLNFMYQNYLnlSTTEILWWAGCIIAFLVKMPLYGVHL 215
Cdd:PRK02546 158 WGGK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTALAAKDFG--LGFQLLCYAGLLIAYGVKLPIVPLHT 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 216 WLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAYP-FIILALWGIIMTSSICLRQLDLKSLIAYSSVSH 294
Cdd:PRK02546 235 WLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPlLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISH 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 295 MGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSI 374
Cdd:PRK02546 315 MGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMS 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 375 NLMAELTIM----TSLFNWSSFTIIITG---TGTLITAAYSLYMFLMTQRGPTPK----HMILDPTYTREHLLISLHMIP 443
Cdd:PRK02546 395 GFVAELMVFvgfaTSDAYTLPFRVVVVFlaaVGVILTPIYLLSMLREIFFGPENKelvsHEKLVDAEPREVFIIACLLVP 474
|
410
....*....|.
gi 57544859 444 SLLLILKPELI 454
Cdd:PRK02546 475 IIGIGLYPKLV 485
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
56-411 |
6.69e-34 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 132.90 E-value: 6.69e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 56 MGVDQISAPLLTLSCWLLPLMILASQnhmrhEPMQRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITR 135
Cdd:PRK06473 75 LGVDGLSLPLLVLNSLLTLIAIYSSD-----ESIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAI 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 136 WGNQaERLKAGTYFLFYTLMGSLPLLIALLTInKNISSTSIFTLNFMYQNYLNLSTtEILWWAGCIIAFLVKMPLYGVHL 215
Cdd:PRK06473 150 WGGQ-RRGYAATKFLLYTAISGILILVSFLGL-VWLSGASSFDYEPLRSHTLPLST-QLLLLAPILVGFGIKIPLVPFHT 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 216 WLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAYPFI-ILALWGIIMTSSICLRQLDLKSLIAYSSVSH 294
Cdd:PRK06473 227 WLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLaTWAVVSVLYGASCAIAQKDMKKMVAYSSIGH 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 295 MGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGL---QIILPLMSLWWFLTSLMNLALP 371
Cdd:PRK06473 307 MGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIP 386
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 57544859 372 PSINLMAELTIMTSLFNWSSFTIIITGTGTLITAAYSLYM 411
Cdd:PRK06473 387 GMVGFIAEFLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLL 426
|
|
| Oxidored_q5_N |
pfam01059 |
NADH-ubiquinone oxidoreductase chain 4, amino terminus; |
1-109 |
6.64e-25 |
|
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
Pssm-ID: 366442 [Multi-domain] Cd Length: 110 Bit Score: 98.75 E-value: 6.64e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 1 MLKILIPTIMLIPTSLFSK-KWLWIMTSNYSILIALVSLMWLKLDSVSGWSYTNLLMGVDQISAPLLTLSCWLLPLMILA 79
Cdd:pfam01059 1 MLKILLPTLMLIPLTFLSKpKWLWTTSTLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80
|
90 100 110
....*....|....*....|....*....|
gi 57544859 80 SQNHMRHEPMQRQQTYIILLTTLQISLILT 109
Cdd:pfam01059 81 SQKHLKSEPNNRQRTFIFLLILLQLFLILT 110
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
9-407 |
3.35e-24 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 105.18 E-value: 3.35e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 9 IMLIPTSLFSKKWLWIMTSNYSILIALVSLMWLKLD-SVSGWSYTNLL-----------MGVDQISAPLLTLSCWLLPLM 76
Cdd:PRK07363 16 IGFFPGNLPSARLRQITLVFAVLVLAWSLFLLTQFDlSDPGMQFQEYLpwneplglsysLGVDGLSLPLLVLNSLLTWIA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 77 ILASQnhmrhEPMQRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQaERLKAGTYFLFYTLMG 156
Cdd:PRK07363 96 IYSIG-----ENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGGE-KRGYASIKFLIYTAVS 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 157 SLPLLIALLTINKNISSTSiftLNFMYQNYLNLST-TEILWWAGCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAV 235
Cdd:PRK07363 170 GLLVLAAFLGIVWLSGSTS---FDYDAISTQNLSLnTQLILLTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGV 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 236 LLKLGGFGLLRISIILTPITTMMAYPfiILALWG---IIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTG 312
Cdd:PRK07363 247 LAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGtisVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLG 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 313 AMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQII---LPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNW 389
Cdd:PRK07363 325 AVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQGSFST 404
|
410
....*....|....*...
gi 57544859 390 SSFTIIITGTGTLITAAY 407
Cdd:PRK07363 405 FPIPTLLCIVASGLTAVY 422
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
58-409 |
4.67e-22 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 98.50 E-value: 4.67e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 58 VDQISAPLLTLSCWLLPLMILASQNHMRHEpmQRQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWG 137
Cdd:PRK12667 80 VDLLGALLGLLTALVMFLILIYSYWYLEHE--SGPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYR 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 138 NQAERLKAGTYFLFYTLMGSLPLLIALL-------TINKNISSTSIFTLNF--MYQNYLNLSTTEILWWAGCIIAFLVKM 208
Cdd:PRK12667 158 DRGDAVEAAIKYALIGAVGTTLYFLALAflyatfgTLNMADLSAKIRGLSFplTGGLAGNPPLALGVALALALWAFTIKA 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 209 PLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRI-------SIILTPITTMMAYPFIILALWGIIMTSSICLRQL 281
Cdd:PRK12667 238 AIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQK 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 282 DLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLwWF 361
Cdd:PRK12667 318 DVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASF-AF 396
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 57544859 362 LTSLMNLA-LPPSINLMAELTIMTSLFNWSSFTIIITGtgtLITAAYSL 409
Cdd:PRK12667 397 LIGALSLVgIPPLNGFFSKLLLFNALLESGFYLPALVL---LIASAISL 442
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
202-449 |
1.26e-17 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 84.98 E-value: 1.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 202 IAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIIL--TPITTMMAYPFIILALWGIIMTSSICLR 279
Cdd:PRK06458 222 IGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIdaAIGSDFPGRLLLIFGLLSVLVAAFFLLR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 280 QLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLW 359
Cdd:PRK06458 302 QRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWG 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 360 WFLTSLMNLALPPSINLMAELTIMTSLFN---WSSFTIIITGTGTLITAayslyMFLMTQR---GPTPkhmiLDPTYTRE 433
Cdd:PRK06458 382 LMLGALAIAGMPPFGVFISEFLILTAGLArgpLLIAILLLLLLTLAFAA-----LVRRVAGmvfGEPP----EAVNRGDL 452
|
250
....*....|....*.
gi 57544859 434 HLLISLHMIPSLLLIL 449
Cdd:PRK06458 453 GWLTTSPMFVHLVLVL 468
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
118-407 |
4.09e-17 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 83.39 E-value: 4.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 118 FYIMFELTLIPT--LIIITRwgnQAERLKAGTYFLFYTLMGSLPLLIALLTInknisSTSIFTLNF-MYQNYLNLSTTEI 194
Cdd:PRK08375 131 LFVFLEIMSLSSyaLVAMGG---DRRALAAARKYLIVGLIGSTFLLIGVGLL-----YGVTGTLNMaDLAGALAENPTVV 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 195 LWWAGCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTM----MAYPFIILALWGI 270
Cdd:PRK08375 203 TAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRfalgLGWLLAVLALLSM 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 271 IMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQ 350
Cdd:PRK08375 283 LVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLG 362
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 351 IILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLF---NWSSFTIIItgTGTLITAAY 407
Cdd:PRK08375 363 RRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVeagQWLVLAVLL--ASSLLALLY 420
|
|
| ND4 |
MTH00062 |
NADH dehydrogenase subunit 4; Provisional |
104-396 |
1.69e-12 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214413 [Multi-domain] Cd Length: 417 Bit Score: 68.80 E-value: 1.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 104 ISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLPLLIALLTInkNISSTSIFTLNFMY 183
Cdd:MTH00062 82 IFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYL--SLVNGSFNFSDWGS 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 184 QNYLNLSTTEILWwagciIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAYPFI 263
Cdd:MTH00062 160 DDSVSLIVYYVLS-----FMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGSFLGYLFLC 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 264 ILALWGIIMTSSiclRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTM 343
Cdd:MTH00062 235 CLFSVFFLITAC---SELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNW 311
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 57544859 344 ILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIII 396
Cdd:MTH00062 312 VLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYLLFW 364
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
202-414 |
4.34e-11 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 64.78 E-value: 4.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 202 IAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIIL--TPITTMMAYPFIILALWGIIMTSSICLR 279
Cdd:PRK08676 214 IGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSMLS 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 280 QLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLW 359
Cdd:PRK08676 294 QRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVFRLQPVAAWG 373
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 57544859 360 WFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITgTGTLITAAYSLYMFLM 414
Cdd:PRK08676 374 VILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAV-LLLLLLAASSFAIFLL 427
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
91-331 |
9.16e-11 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 64.29 E-value: 9.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 91 RQQTYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTyfLFYTLMGSLPLLIALLTINKN 170
Cdd:PRK12650 108 GNTSFYLLMTAFMAAMLLLVLADDVVVLFVAWELVSLASFFLIARSGSGGEAGSIRT--LILTFFGGLTLLAAVAIAATQ 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 171 ISSTSIftlnfmyqnylnlstTEIL---WWAG-----CIIAFLVKMPLYG------VHLWLPKAHVEAPIAGSMVLAAVL 236
Cdd:PRK12650 186 TGTTSL---------------SGILhsdVWAEkpgltTVVAVLIAVAAFTksaqfpFHFWLPEAMAAITPVSAFLHAAAV 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 237 LKLGGFGLLRISIILTPITTMmAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMIL 316
Cdd:PRK12650 251 VKAGIYLLLRFSPVFHDVAVW-NWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVH 329
|
250
....*....|....*
gi 57544859 317 MIAHGLVSSLLFCLA 331
Cdd:PRK12650 330 TLAHALFKSSLFMLI 344
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
110-328 |
1.09e-10 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 63.86 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 110 FSATEFIFFYIMFELTLIPTLIIITRwGNQAERLKAGTYFLFyTLMGSLPLLIALLTInknISSTSIFTLNFMYQNYLNL 189
Cdd:PRK08668 115 FLANDLLTLYIFWEIMTFSSFMMVPM-GKKESRKASLKYFVL-SAIGAYAMLYAIFLI---YAKTGTFDFADISQGLIND 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 190 STTEILWWAGC-IIAF-LVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLrISIILTPITTMMA-------- 259
Cdd:PRK08668 190 TSTGFALIVFLfLLAFgVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFL-LVLYVLPGTKLFSefgtyrgv 268
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 57544859 260 ----YPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLF 328
Cdd:PRK08668 269 plfnYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
|
|
| PRK07234 |
PRK07234 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
98-410 |
2.46e-10 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235978 [Multi-domain] Cd Length: 470 Bit Score: 62.28 E-value: 2.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 98 LLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITrWGNQAERLKAGTYFLFYTLMGSLPLLIALLTINKNISSTSIf 177
Cdd:PRK07234 99 QLLILHGSVNAAFVCADLISLYVALEVLSIATFLLVA-YPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAF- 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 178 tlnfmyqnyLNLSTTEILWWAGCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTM 257
Cdd:PRK07234 177 ---------SGLATADPEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLI 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 258 MAYPFIILALWGIImtssICLRQLDLKSLIAYSSVSHMGLVISGILIqtpwgmtgAMILMIAHGLVSSLLFCLANTSYER 337
Cdd:PRK07234 248 VRIFGVGTALLGVL----FALLEKDLKRMLAFSTISQLGFILAAPLV--------GGLYALAHGLVKSTLFLCAGALPSR 315
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 57544859 338 IHS---RTMILIrglqiilplmSLWWFLT--SLMNLALPPSINLMAELTIMTSLFNWSSFTIIITGTGTLITAAYSLY 410
Cdd:PRK07234 316 NFTeliSQMLGI----------GKWIPLTmaSFSIAGFPLLAGFVSKVLTLKNLLPWQAIALNLAAVGTAASFWKFIF 383
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
49-387 |
1.16e-09 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 60.51 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 49 WSYTNLLMGVDQISAPLLTLSCWLLPLMILASQNHMRHEPMQRQQTYIILLTTLQI-SLILTFSATEFIFFYIMFELTLI 127
Cdd:PRK08667 66 APGLDITFHIDRLAAFFIILIGLVSLCVAIYSLGYNEHMSSNERANLLSALTALFIlSMLGVVASANTFSFLFFWEIMAL 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 128 PTLIIITRWGNQAERLKAGTYFLFYTLMGSLPLLIALLTINKNISSTSIFTLNFMyqnylnlSTTEILWWAGCIIAFLVK 207
Cdd:PRK08667 146 SSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGAS-------AGILSLVFLLLFLGFGIK 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 208 MPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRIsiILTPITTMMAYPFIIL------ALWGIIMTssicLRQL 281
Cdd:PRK08667 219 AGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRF--LMDVLSPELWWGVLILlagsisALLGVIYA----LKEH 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 282 DLKSLIAYSSVSHMGLVISGILIQTPWGMTG----AMILMIA-------HGLVSSLLFCLANTSYERIHSRTMILIRGLQ 350
Cdd:PRK08667 293 DLKGLLAYSSIENIGIILMGIGLYVIFGVYGldtlALLALGGalfhslnHALFKSLLFLTAGSVVHATGTRNIEKMGGLV 372
|
330 340 350
....*....|....*....|....*....|....*..
gi 57544859 351 IILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLF 387
Cdd:PRK08667 373 KLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFF 409
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
58-372 |
1.18e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 60.37 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 58 VDQISAPLLTLSCW-LLPLMILASQNHMRhEPMQRQQTYIILLTTLQIS--LILTFSATEFIFFYIMFELTLIPTLIIIT 134
Cdd:PRK12665 74 VDRLSALMLVVSSVvLLAVLVYAIGQGIR-DGDEEQPVSIFLPTYLILVagVSNAFLAGDLFNLYVGFEILLVASYVLLT 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 135 RwGNQAERLKAGTYFLFYTLMGSLPLLIALLTInknisSTSIFTLNfMYQNYLNL----STTEILWWAGCIIAFLVKMPL 210
Cdd:PRK12665 153 L-GATAARVRAGVTYVMVSMVSSLLFLIGIALV-----YAATGTLN-MADLAVRLdelpSGTRTALFAVLLVAFGIKAAV 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 211 YGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAyPFIILALWGIIMTSSICLRQLDLKSLIAYS 290
Cdd:PRK12665 226 FPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLFPGGGLDT-LLMVVALLTMVVGILGAIAQSDIKRLLSFT 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 291 SVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSlMNLA- 369
Cdd:PRK12665 305 LVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVLFFVPA-LNLGg 383
|
...
gi 57544859 370 LPP 372
Cdd:PRK12665 384 IPP 386
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
101-421 |
3.35e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 58.67 E-value: 3.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 101 TLQISLILTFSaTEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLPLLIALLTInknisSTSIFTLN 180
Cdd:PRK06589 125 TILIGVLIALS-SDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILI-----YTKTGNLD 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 181 FMYQNYLNLSTTEILwwAGCIIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAY 260
Cdd:PRK06589 199 FVSGGLFSKNQSIIL--LLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRI 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 261 -----PFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSY 335
Cdd:PRK06589 277 faefnWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIY 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 336 ERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFN----WSSFTIIITGTGTLITAAYSLYM 411
Cdd:PRK06589 357 SLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEqnqpWLSIIVMLVVIASSILSALYLLK 436
|
330
....*....|
gi 57544859 412 FLMTQRGPTP 421
Cdd:PRK06589 437 ILSSIYKPSL 446
|
|
| PRK08377 |
PRK08377 |
NADH dehydrogenase subunit N; Validated |
201-412 |
4.67e-09 |
|
NADH dehydrogenase subunit N; Validated
Pssm-ID: 181406 [Multi-domain] Cd Length: 494 Bit Score: 58.24 E-value: 4.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 201 IIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPIT--TMMAYPFIILALWGIIMTSSICL 278
Cdd:PRK08377 213 IFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANgwSSVLKLVIIMATLTVFFAELSAL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 279 RQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSL 358
Cdd:PRK08377 293 RQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTAL 372
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 57544859 359 WWFLTSLMNLALPpsinlmaeltimtsLFN--WSSFTIIITGTGTLITAAYSLYMF 412
Cdd:PRK08377 373 ALTIGALSTVGIP--------------LFNvfWSKFRIILAGLSAGYTWPVALVLG 414
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
58-424 |
6.18e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 58.18 E-value: 6.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 58 VDQISAPLLTLSCWLLPLMILASQNHMRHEP-MQRQQTYIILLTTLQISLILTfsaTEFIFFYIMFELTLIPTLIIITRW 136
Cdd:PRK08376 88 VDLFGAFMALIATIVSFLAVLYSISYMKHDTgLDKYYTLILLLELGMLGMAIT---GDLFNFFVFLEIMSIASYALVAFR 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 137 GNQAERLKAGTYFLFYTLMGSLPLL--IALLTINKNisstsifTLNFMYQNY---LNLSTTEILWWAGCIIAFLVKMPLY 211
Cdd:PRK08376 165 NDTWEAIEAGIKYMFVGSLASSMVLlgIALLYGQYG-------TLNMAYLAVkmsENPTVVAKIALALFIAGLAMKSGAV 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 212 GVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAYPF--IILALWGIIMTSSICLRQLDLKSLIAY 289
Cdd:PRK08376 238 PVHMWLPDAYPAAPSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVGWviIILGCLTMFVGVAMAVVQKDVKRLLAY 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 290 SSVSHMG---------LVISGILIQTPWG---MTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMS 357
Cdd:PRK08376 318 HSVSQIGymllglgvgLAALGDPAMASYGeiaLAGGIYHIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTT 397
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 57544859 358 LWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITGTGT-LITAAYSLYMFLMTQRGPTPKHM 424
Cdd:PRK08376 398 IAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPILGVIAMIGSvLTLASFVKVFHTAFFGPPSEKVM 465
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
18-457 |
6.36e-09 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 57.82 E-value: 6.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 18 SKKWLWIMTSNYSILIALVSLMWLkLDSVSGWSYTNLLMgVDQISAPLLTLSCWLLPLMILASQNHMRHEPMQRQQTYII 97
Cdd:COG1007 30 RSRRLLAGLALLGLLLALALLLLA-LGGGTGTAFGGMFV-VDGFALFFKLLILLAALLVLLLSRDYLERRGLLRGEFYAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 98 LLTTLqISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGT-YFLFYTLMGSLPLL-IALLtinknISSTS 175
Cdd:COG1007 108 LLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDRRSSEAALkYFLLGALSSGFLLYgISLL-----YGATG 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 176 IFTLNFMYQNYLNLSTTEILWWAGC---IIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRI-SIIL 251
Cdd:COG1007 182 SLNLAGIAAALAAGGANSPLLLLGLvlvLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlVEAF 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 252 TPITTMMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLF-CL 330
Cdd:COG1007 262 PGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFaVI 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 331 ANTSYERIHSRTMILIRGLQIILPLMSLwWFLTSLMNLA-LPPSINLMAELTIMTSLFNWSSFTIIITGT-GTLITAAYS 408
Cdd:COG1007 342 LLLSRKGGEAEEIEDLAGLARRSPLLAL-AMTIFLLSLAgIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVlNSVISAYYY 420
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 57544859 409 LY-MFLMTQRGPTPKHMILDPTYTRehLLISLHMIPSLLLILKPELIWGW 457
Cdd:COG1007 421 LRvVKAMYFDEPEEEAPISAPPGLR--VALVIAALLVLLLGIFPGPLLDL 468
|
|
| PRK12662 |
PRK12662 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
206-397 |
1.66e-08 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 56.67 E-value: 1.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 206 VKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRI-----SIILTPITTMMAYPFIILALWGIIMTSSICLRQ 280
Cdd:PRK12662 221 IKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIvydvfKANFVFTTLPFNNVFMILAALAIVFGSVLAILS 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 281 LDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWW 360
Cdd:PRK12662 301 KDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSMPKITLAF 380
|
170 180 190
....*....|....*....|....*....|....*..
gi 57544859 361 FLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIIT 397
Cdd:PRK12662 381 VLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVV 417
|
|
| PRK06525 |
PRK06525 |
hydrogenase 4 subunit D; Validated |
108-372 |
4.67e-08 |
|
hydrogenase 4 subunit D; Validated
Pssm-ID: 180606 [Multi-domain] Cd Length: 479 Bit Score: 54.98 E-value: 4.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 108 LTFSATeFIFFYIMFELTLIPTLIIITRWGNQaERLKAGTYFLFYTLMGSLPLLIALLTINKNISSTSIFTLNFMYQnyl 187
Cdd:PRK06525 129 LVYSST-LLGLLLFFEITGLCSWALISYYQSP-KALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALSGLHG--- 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 188 nlsTTEILWWAGCIIAFLVKMPLYGVHLWLPKAhVEAPIAGSMVL-AAVLLKLGGFGLLRISIILTPITTMMAYPFIILA 266
Cdd:PRK06525 204 ---SLKYLVFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMA 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 267 LWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQ---TPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTM 343
Cdd:PRK06525 280 IVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLL 359
|
250 260
....*....|....*....|....*....
gi 57544859 344 ILIRGLQIILPLMSLWWFLTSLMNLALPP 372
Cdd:PRK06525 360 PRLRGVLKKLPLVGVGFCVAALAITGVPP 388
|
|
| PRK12646 |
PRK12646 |
DUF4040 family protein; |
95-419 |
8.23e-08 |
|
DUF4040 family protein;
Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 54.76 E-value: 8.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 95 YIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLPLLIALLTInKNISST 174
Cdd:PRK12646 112 FYFYLTLFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIML-YIMTGT 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 175 SIFTLNFMYQNYLNLSTTEILWWAGCIIAFLVKMPLYGVHLWLPKAhVEAPIAGSMVL-AAVLLKLGGFGLLRISIILTp 253
Cdd:PRK12646 191 NNITEILGQADHIKNHGLFIPMIFMFLLGAFTKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRFTPLLG- 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 254 ITTMMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVIS-----GILIQTPWG---------MTGAMILMIA 319
Cdd:PRK12646 269 LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAmvgigGGYAQHQQDaiasiyvfvLFAALFHLMN 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 320 HGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWS-------SF 392
Cdd:PRK12646 349 HAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQTGqlsqfslIS 428
|
330 340 350
....*....|....*....|....*....|
gi 57544859 393 TIIITGTG---TLITAAYSLYMFLMTQRGP 419
Cdd:PRK12646 429 MIIIVFIGviaSIFTFTYALYMVKEVFWGK 458
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
94-455 |
7.60e-07 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 51.49 E-value: 7.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 94 TYIILLTTLQISLILtfSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGtyfLFYTLMGSLPLLIALLTINKNISS 173
Cdd:TIGR01770 105 YILLLFALLGIFLLV--SSNDLLSIYLGLELQSLCFYVLAGLKRKSRFSTEAG---LKYFILGAFSSGLLLFGISLIYGF 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 174 TSIFTLNFMYQNYLNLSTTEILWWAGCI---IAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISI- 249
Cdd:TIGR01770 180 TGSLNFEDLLLFLSNGMLNISLLLLGIVlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLy 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 250 ILTPITTMMAYPFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVS----S 325
Cdd:TIGR01770 260 ILFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSlgafG 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 326 LLFCLANTSYERIHSrtMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITG-TGTLIT 404
Cdd:TIGR01770 340 VLSLLRSYKDEWIEY--ISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAvLTSVIG 417
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 57544859 405 AAYSL----YMFLMTQrgptPKHMILDPTYTREHLLISLHMIPSLLLILKPELIW 455
Cdd:TIGR01770 418 AFYYLrvvkVMYFDKP----ERRIPSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
214-423 |
2.11e-06 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 50.15 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 214 HLWLPKAhVEAPI-------AGSMVLAAVLLKLggfgllRISIILTPITTMMaYPFIILALWGIIMTSSICLRQLDLKSL 286
Cdd:COG1009 231 HFWLPDA-MEGPTpvsallhAATMVKAGVYLLA------RLSPLFALSPVWL-TVVAIIGAITALFAALIALAQTDIKRV 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 287 IAYSSVSHMGLVISGILIQtpwGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLM 366
Cdd:COG1009 303 LAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLGAGSVIHATGTRDIRKMGGLRKKMPITAITFLIGALS 379
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 57544859 367 NLALPPSINLMAELTIMTSLFNWSSFTIIITGTGTL---ITAAYSLYMFLMT----QRGPTPKH 423
Cdd:COG1009 380 LAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALLgafLTAFYSFRLFFLVffgkPRPKTPKH 443
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
201-324 |
8.83e-06 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 47.89 E-value: 8.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 201 IIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRIS-IILTPITTMMAYPFIILALWGIIMTSSICLR 279
Cdd:PRK05777 211 LVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLvVAFGGLSEDWQQVLAIIAIASMLVGNLAALS 290
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 57544859 280 QLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVS 324
Cdd:PRK05777 291 QTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMT 335
|
|
| PRK12668 |
PRK12668 |
Na(+)/H(+) antiporter subunit D; |
112-328 |
1.22e-05 |
|
Na(+)/H(+) antiporter subunit D;
Pssm-ID: 237168 [Multi-domain] Cd Length: 581 Bit Score: 47.58 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 112 ATEFIFFYIMFELTLI-PTLIIITRWGNQAerLKAG-TYFLFYTLMGSLPLLIALLtinkNISSTSIFTLNFMyqnylnL 189
Cdd:PRK12668 112 AGDLLTLFVFWELMAFtSTFLVWARGTKAA--VRAGfRYLLVHVLGGVLLLAGILL----HYAETGSFAFGAI------A 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 190 STTEILWWagCI-IAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRisiiLTPITTMMAYPFIILALW 268
Cdd:PRK12668 180 GLGGTAAW--LIlIGFGVNAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALAR----AFPGTELLIYIGAAMAVY 253
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 269 GIIMTssicLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLF 328
Cdd:PRK12668 254 GVFFA----LLENDLRRLLSYHIVSQVGYMVAGIGIGTALAINGAVAHAFNHILYKGLLF 309
|
|
| PRK12647 |
PRK12647 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
75-423 |
1.39e-05 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237156 [Multi-domain] Cd Length: 761 Bit Score: 47.61 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 75 LMILASQNHMRHEPMQ-RQQTYIILLTTLQISLILtfsATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYT 153
Cdd:PRK12647 79 LIVLYAGGYLKGHPDLgRFYSYILLFMASMLGLVL---SDNLITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVT 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 154 LMGSLPLLIALLTINKNISSTSIFTL----NFMYQNYLNLSTTeILWWAGciiAFlVKMPLYGVHLWLPKAhVEAPIAGS 229
Cdd:PRK12647 156 GGGGLALLAGLILLGNVTGTYSLSELlasgDVIREHPLYLAIL-LLVLGG---AF-TKSAQFPFHFWLPNA-MEAPTPVS 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 230 -------MVLAAVLLKLGgfgllrisiiLTPITTMMAYPFIILALWG---IIMTSSICLRQLDLKSLIAYSSVSHMGLVI 299
Cdd:PRK12647 230 aylhsatMVKAGIYLLAR----------LNPVLGGTPLWQTILPLFGgltMLTGALLAVRQTDLKLILAYSTVSALGTLV 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 300 SGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAE 379
Cdd:PRK12647 300 MLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAK 379
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 57544859 380 LTIMTSLFN---WSSFTIIITGTGTLITAAYSLYMFL---MTQRGPTPKH 423
Cdd:PRK12647 380 ELIYEALLEaplWSLILTVAAVLGNALMVAVAFLVGIkpfLGKLVETPKH 429
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
104-397 |
3.24e-05 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 45.79 E-value: 3.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 104 ISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLPLLIALLTINKNISSTSIFTLNFMY 183
Cdd:MTH00196 4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYINLVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 184 QNYLNLSTTEILWWAGCII-AFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLggfgllrISIILTPITTMMAYpF 262
Cdd:MTH00196 84 NSGQSFSSVSVPIGYLLIIvALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLG-------IFSILVSIGLNVNI-L 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 263 IILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSYERIHsrT 342
Cdd:MTH00196 156 LIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSICVFSIILALNVYKN--L 233
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 57544859 343 MILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIIT 397
Cdd:MTH00196 234 IIEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLL 288
|
|
| PRK06521 |
PRK06521 |
hydrogenase 4 subunit B; Validated |
208-387 |
2.41e-04 |
|
hydrogenase 4 subunit B; Validated
Pssm-ID: 235820 [Multi-domain] Cd Length: 667 Bit Score: 43.72 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 208 MPLygvHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPiTTMMAYPFIILALWGIIMTSSI--CLRQLDLKS 285
Cdd:PRK06521 227 VPL---HVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRVVFDLLG-APGWWWGVLVLALGAISAVLGVlyALAEHDLKR 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 286 LIAYSSVSHMGLVISGI---LIQTPWGM--------TGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILP 354
Cdd:PRK06521 303 LLAYSTIENIGIIFVGLglaMVFIAYGMpllaalalTAALYHLLNHALFKSLLFLGAGAVLHATGTRDMEKLGGLIRRMP 382
|
170 180 190
....*....|....*....|....*....|...
gi 57544859 355 LMSLWWFLTSLMNLALPPSINLMAELTIMTSLF 387
Cdd:PRK06521 383 WTAWAFLIGCLAISALPPLNGFVSEWLLLQSLL 415
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
201-335 |
2.45e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 43.40 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 201 IIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRI-SIILTPITTMMAYPFIILALWGIIMTSSICLR 279
Cdd:PRK07691 216 LFVFATKAGLFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTfTLFFSHDTSFTHYLILILALLTIIFGVIGAVA 295
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 57544859 280 QLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLANTSY 335
Cdd:PRK07691 296 YFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMI 351
|
|
| PRK07376 |
PRK07376 |
NADH-quinone oxidoreductase subunit L; |
53-418 |
7.18e-04 |
|
NADH-quinone oxidoreductase subunit L;
Pssm-ID: 236005 [Multi-domain] Cd Length: 673 Bit Score: 41.93 E-value: 7.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 53 NLLMG--VDQISAPLLTLSCWLLPLMILASQNHMRHEP-MQRQQTYIILLTTLQISLILTFSATEFiffYIMFELTLIPT 129
Cdd:PRK07376 82 HLPMGyvIDPLGAVMLVLVTTVALLVMIYSDGYMAHDPgYVRFFAYLSLFSSSMLGLVISPNLVQI---YVFWELVGMCS 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 130 LIIITRWGNQAERLKAGTYFLFYTLMGSLPLLIALLTInknISSTSIFTLNFMYQNYLNL-STTEILWWAGCIIAFLVKM 208
Cdd:PRK07376 159 YLLVGFWYDRKGAADAAQKAFVVNRVGDFGLLLGILGL---FWATGSFDFDGIADRLSELvSSGAVSGWLALLLCILVFL 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 209 ---------PLygvHLWLPKAhVEAPI-------AGSMVLAAVLLKLggfgllRISIILTPITTMMaypfIILALWGII- 271
Cdd:PRK07376 236 gpmaksaqfPL---HVWLPDA-MEGPTpisalihAATMVAAGVFLVA------RMYPVFEQFPAVM----TVIAWTGAIt 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 272 --MTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPwgmTGAMILMIAHGLVSSLLFcLANTS----------YERIH 339
Cdd:PRK07376 302 afLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAY---SAGLFHLMTHAYFKAMLF-LGSGSvihgmeevvgHDPVL 377
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 57544859 340 SRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIITGTGTLITAAYSLYMFLMTQRG 418
Cdd:PRK07376 378 AQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEANPALWFVGFLTAGMTAFYMFRMYFLTFEG 456
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
119-331 |
1.16e-03 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 41.09 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 119 YIMFELTLIPTLIIITrWGNQAERLKAGTYFLFYTLMGSLPLLIALLTINKNISstsifTLNF----MYQNYLNLSTTEI 194
Cdd:PRK12663 134 YVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFG-----TLNMahiaMRLNDMGDTATLT 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 195 LWWAGCIIAFLVKMPLYGVHlWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAYPFIILALWGIIMTS 274
Cdd:PRK12663 208 TIALLFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLATMAAITMVIG 286
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 57544859 275 SI-CLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLFCLA 331
Cdd:PRK12663 287 ALgALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIA 344
|
|
| PRK12644 |
PRK12644 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
214-328 |
1.93e-03 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237154 [Multi-domain] Cd Length: 965 Bit Score: 40.68 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 214 HLWLPKAhVEAPI-------AGSMVLAAVLLKLGG------FGLLRISIILTPITTMmaypfiILALWgiimtssICLRQ 280
Cdd:PRK12644 223 HFWLPGA-MAAPTpvsaylhAAAMVKAGIYLVARLapgfadVPVWRPTVLVLGLATM------LLGGW-------RALRQ 288
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 57544859 281 LDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIAHGLVSSLLF 328
Cdd:PRK12644 289 HDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALF 336
|
|
| ND5 |
MTH00032 |
NADH dehydrogenase subunit 5; Provisional |
59-331 |
1.96e-03 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214407 [Multi-domain] Cd Length: 669 Bit Score: 40.71 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 59 DQISAPLLTLSCWLLPLMILASQNHMRHEP-MQRQQTYIILLTTLQISLIltfSATEFIFFYIMFELTLIPTLIIITRWG 137
Cdd:MTH00032 79 DTLSVTMLLVISSISTLVHIYSTSYMSDDPhVPRFLCYLSLFTFLMMVLV---TSDNYLQLFIGWEGVGVCSYLLVAFWT 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 138 NQAERLKAGTYFLFYTLMGSLPLLIALLTINKNISSTSIFTLN-------FMYQNYLNLSTTEILWWAGCIIAFLV---- 206
Cdd:MTH00032 156 TRIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFLTFNggsvgsgIMDRGYYGGGAYESPLAPFAIIGILLligc 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 207 --KMPLYGVHLWLPKAhVEAPIAGSMVLAAVLLKLGGFGLLRISIiltPITTMMAYPFIILALWGII---MTSSICLRQL 281
Cdd:MTH00032 236 igKSAQLGLHTWLPDA-MEGPTPVSALIHAATMVTAGVFLMIRSF---PLFEKAPLTLLIITIFGALtafFAATVGLVQN 311
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 57544859 282 DLKSLIAYSSVSHMGLVISGILIQTPWGMtgAMILMIAHGLVSSLLFCLA 331
Cdd:MTH00032 312 DLKKVIAYSTCSQLGYMVLIIGIEGSHNV--GLFHLVNHAFFKALLFLSA 359
|
|
| PRK08042 |
PRK08042 |
formate hydrogenlyase subunit 3; Reviewed |
208-397 |
2.38e-03 |
|
formate hydrogenlyase subunit 3; Reviewed
Pssm-ID: 181206 [Multi-domain] Cd Length: 593 Bit Score: 40.20 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 208 MPLYGvhlWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTPITTMMAYPFIILALWGIIMTSSICLRQLDLKSLI 287
Cdd:PRK08042 197 IPLHG---WVPQAHANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 288 AYSSVSHMGLV-------ISGILIQTP----WGMTGAMILMIAHGLVSSLLFCLANTSYERIHSRTMILIRGLQIILPLM 356
Cdd:PRK08042 274 AYHTLENIGIIllglgagVTGIALEQPaliaLGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVI 353
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 57544859 357 SLWWFLTSLMNLALPPSINLMAELTIMTSLFNWSSFTIIIT 397
Cdd:PRK08042 354 SIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVA 394
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
94-449 |
3.33e-03 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 39.57 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 94 TYIILLTTLQISLILTFSATEFIFFYIMFELTLIPTLIIITRWGNQAERLKAGTYFLFYTLMGSLPLLIALLtinkNISS 173
Cdd:MTH00200 5 ILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLL----NAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 174 TSIFTLNFMYqnyLNLSTTEILwwagciIAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGFGLLRISIILTP 253
Cdd:MTH00200 81 SGQWGISEML---GPLSETLIL------LALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 254 ITtmmaypFIILALWGIIMTSSICLRQLDLKSLIAYSSVSHMGLVISGILIQTPWGMTGAMILMIahglVSSLLFCLANT 333
Cdd:MTH00200 152 NI------LLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVI----ITLTVFLLLNL 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57544859 334 SyeriHSRTMILIRGLQIILPLMSLWWFLTSLMNLALPPSINLMAELTIMTSLFNWS-SFTIIITGTGTLITAAYSLYMF 412
Cdd:MTH00200 222 L----NSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGlFIYATILLLGSLLSLFFYLRLS 297
|
330 340 350
....*....|....*....|....*....|....*..
gi 57544859 413 LMTQRGPTPKHMILDPTYTREHLLISLHMIPSLLLIL 449
Cdd:MTH00200 298 YLTLLTLSPNQINMMSSWRTKSNSNLLVGLLLLLSIL 334
|
|
| |
