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Conserved domains on  [gi|58267748|ref|XP_571030|]
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hypothetical protein CNE05020 [Cryptococcus neoformans var. neoformans JEC21]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
L51_S25_CI-B8 super family cl04907
Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain; The proteins in this family are ...
 36-138 7.48e-10

Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain; The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.


The actual alignment was detected with superfamily member smart00916:

Pssm-ID: 446554  Cd Length: 70  Bit Score: 52.14  E-value: 7.48e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58267748     36 NSGAGPRQFLRHHAPALAYANPLLPIAIRRipdprskhkdpsspdreavklgrwggvadglqlGKGNVPGgeMVVEFHNA 115
Cdd:smart00916   1 GSSAGARKFLESNLPTLKFKNPDVPILVRE---------------------------------RSGVVPK--LTAEYENG 45

                           90       100
                   ....*....|....*....|...
gi 58267748    116 PAQTLPLAHLSGQQILDQLLAIA 138
Cdd:smart00916  46 REKEISLRNLSAEEILKKLQLLV 68
 
Name Accession Description Interval E-value
L51_S25_CI-B8 smart00916
Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain; Proteins containing this domain are ...
 36-138 7.48e-10

Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain; Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25. This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) . It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins.


Pssm-ID: 197984  Cd Length: 70  Bit Score: 52.14  E-value: 7.48e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58267748     36 NSGAGPRQFLRHHAPALAYANPLLPIAIRRipdprskhkdpsspdreavklgrwggvadglqlGKGNVPGgeMVVEFHNA 115
Cdd:smart00916   1 GSSAGARKFLESNLPTLKFKNPDVPILVRE---------------------------------RSGVVPK--LTAEYENG 45

                           90       100
                   ....*....|....*....|...
gi 58267748    116 PAQTLPLAHLSGQQILDQLLAIA 138
Cdd:smart00916  46 REKEISLRNLSAEEILKKLQLLV 68
L51_S25_CI-B8 pfam05047
Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain; The proteins in this family are ...
 41-65 4.29e-04

Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain; The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.


Pssm-ID: 428280  Cd Length: 52  Bit Score: 36.39  E-value: 4.29e-04
                          10        20
                  ....*....|....*....|....*
gi 58267748    41 PRQFLRHHAPALAYANPLLPIAIRR 65
Cdd:pfam05047   1 ARDFLEKNLPTLKYKNPQVPILVRE 25
 
Name Accession Description Interval E-value
L51_S25_CI-B8 smart00916
Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain; Proteins containing this domain are ...
 36-138 7.48e-10

Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain; Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25. This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) . It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins.


Pssm-ID: 197984  Cd Length: 70  Bit Score: 52.14  E-value: 7.48e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58267748     36 NSGAGPRQFLRHHAPALAYANPLLPIAIRRipdprskhkdpsspdreavklgrwggvadglqlGKGNVPGgeMVVEFHNA 115
Cdd:smart00916   1 GSSAGARKFLESNLPTLKFKNPDVPILVRE---------------------------------RSGVVPK--LTAEYENG 45

                           90       100
                   ....*....|....*....|...
gi 58267748    116 PAQTLPLAHLSGQQILDQLLAIA 138
Cdd:smart00916  46 REKEISLRNLSAEEILKKLQLLV 68
L51_S25_CI-B8 pfam05047
Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain; The proteins in this family are ...
 41-65 4.29e-04

Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain; The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.


Pssm-ID: 428280  Cd Length: 52  Bit Score: 36.39  E-value: 4.29e-04
                          10        20
                  ....*....|....*....|....*
gi 58267748    41 PRQFLRHHAPALAYANPLLPIAIRR 65
Cdd:pfam05047   1 ARDFLEKNLPTLKYKNPQVPILVRE 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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