|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-281 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 612.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00131 41 LITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00131 121 LLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFL 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 240
Cdd:MTH00131 201 HETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 280
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 58415076 241 LRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 281
Cdd:MTH00131 281 LRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLT 321
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-280 |
1.60e-112 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 329.83 E-value: 1.60e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYlqKE----TWNIG 76
Cdd:COG1290 50 FVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIG 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 77 VILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFH-FLLPFVIAGASMI 155
Cdd:COG1290 128 VLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVL 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 156 HLLFLHQTGSNNPTG----LNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNllGDPDNFTPANPLVTPPHIKPE 231
Cdd:COG1290 208 HLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPD 285
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 58415076 232 WYFLFAYAILRSIP--NKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPL 280
Cdd:COG1290 286 WYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPV 336
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-166 |
2.66e-82 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 246.13 E-value: 2.66e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSY--LQKETWNIGVI 78
Cdd:cd00284 33 LVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 79 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 158
Cdd:cd00284 113 LLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLL 192
|
....*...
gi 58415076 159 FLHQTGSN 166
Cdd:cd00284 193 FLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-164 |
9.73e-78 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 234.20 E-value: 9.73e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYG--SYLQKETWNIGVI 78
Cdd:pfam00033 24 LAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVI 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 79 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 158
Cdd:pfam00033 104 LLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLL 183
|
....*.
gi 58415076 159 FLHQTG 164
Cdd:pfam00033 184 FLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
189-278 |
8.98e-12 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 61.74 E-value: 8.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 189 LLGFILMLVGLtsvALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPMLH 268
Cdd:TIGR01156 44 ILGTIACVVGL---AVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115
|
90
....*....|
gi 58415076 269 TSKQRGNTFR 278
Cdd:TIGR01156 116 NVNKFQNPFR 125
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-281 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 612.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00131 41 LITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00131 121 LLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFL 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 240
Cdd:MTH00131 201 HETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 280
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 58415076 241 LRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 281
Cdd:MTH00131 281 LRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLT 321
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-281 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 572.62 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00119 42 LITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00119 122 LLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 240
Cdd:MTH00119 202 HETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAI 281
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 58415076 241 LRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 281
Cdd:MTH00119 282 LRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLS 322
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-281 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 568.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00074 42 LIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00074 122 FLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 240
Cdd:MTH00074 202 HETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAI 281
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 58415076 241 LRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 281
Cdd:MTH00074 282 LRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLT 322
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-281 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 550.29 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00191 38 LIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILL 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00191 118 ILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 240
Cdd:MTH00191 198 HETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAI 277
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 58415076 241 LRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 281
Cdd:MTH00191 278 LRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLT 318
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-281 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 547.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00100 41 LILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00100 121 FTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFL 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 240
Cdd:MTH00100 201 HETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAI 280
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 58415076 241 LRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 281
Cdd:MTH00100 281 LRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLS 321
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-281 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 534.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00156 31 LMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIIL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00156 111 FLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFL 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 240
Cdd:MTH00156 191 HQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAI 270
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 58415076 241 LRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 281
Cdd:MTH00156 271 LRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPIN 311
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-281 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 507.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00034 41 LIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILF 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00034 121 LLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFL 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 240
Cdd:MTH00034 201 HQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAI 280
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 58415076 241 LRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 281
Cdd:MTH00034 281 LRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLS 321
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-280 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 504.05 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00145 42 LGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00145 122 LLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 240
Cdd:MTH00145 202 HETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAI 281
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 58415076 241 LRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPL 280
Cdd:MTH00145 282 LRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-281 |
3.78e-171 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 478.02 E-value: 3.78e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00016 42 LVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00016 122 LLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 240
Cdd:MTH00016 202 HQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAI 281
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 58415076 241 LRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 281
Cdd:MTH00016 282 LRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLN 322
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-280 |
2.38e-148 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 420.26 E-value: 2.38e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00022 40 LVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIF 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00022 120 LLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYL 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 240
Cdd:MTH00022 200 HVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAI 279
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 58415076 241 LRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPL 280
Cdd:MTH00022 280 LRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPL 319
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-281 |
4.89e-146 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 414.32 E-value: 4.89e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00224 42 LVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILF 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00224 122 ILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 240
Cdd:MTH00224 202 HQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAI 281
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 58415076 241 LRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 281
Cdd:MTH00224 282 LRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLN 322
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-281 |
1.19e-145 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 413.33 E-value: 1.19e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00053 42 LIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIF 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00053 122 LLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIAL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 240
Cdd:MTH00053 202 HEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAI 281
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 58415076 241 LRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 281
Cdd:MTH00053 282 LRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLS 322
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-280 |
1.60e-112 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 329.83 E-value: 1.60e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYlqKE----TWNIG 76
Cdd:COG1290 50 FVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIG 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 77 VILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFH-FLLPFVIAGASMI 155
Cdd:COG1290 128 VLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVL 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 156 HLLFLHQTGSNNPTG----LNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNllGDPDNFTPANPLVTPPHIKPE 231
Cdd:COG1290 208 HLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPD 285
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 58415076 232 WYFLFAYAILRSIP--NKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPL 280
Cdd:COG1290 286 WYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPV 336
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
4-281 |
2.21e-111 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 326.51 E-value: 2.21e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 4 QILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILLLLT 83
Cdd:MTH00033 41 QILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIM 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 84 MMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFLHQT 163
Cdd:MTH00033 121 MLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEK 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 164 GSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFS--PNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAIL 241
Cdd:MTH00033 201 GSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAIL 280
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 58415076 242 RSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 281
Cdd:MTH00033 281 RSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTG 320
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-268 |
6.94e-107 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 314.19 E-value: 6.94e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00086 30 LVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIY 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00086 110 LLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVgLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 240
Cdd:MTH00086 190 HSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAI 268
|
250 260
....*....|....*....|....*...
gi 58415076 241 LRSIPNKLGGVLALLFSILVLMLVPMLH 268
Cdd:MTH00086 269 LRAIPNKVLGVIALLMSIVVFYFFIFVN 296
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-166 |
2.66e-82 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 246.13 E-value: 2.66e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSY--LQKETWNIGVI 78
Cdd:cd00284 33 LVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 79 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 158
Cdd:cd00284 113 LLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLL 192
|
....*...
gi 58415076 159 FLHQTGSN 166
Cdd:cd00284 193 FLHEQGSS 200
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-265 |
5.95e-82 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 250.67 E-value: 5.95e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKETWNIGVILL 80
Cdd:MTH00046 32 MVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILY 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 81 LLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLLFL 160
Cdd:MTH00046 112 LLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYL 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 161 HQTGSNNPTGL-NSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYA 239
Cdd:MTH00046 192 HKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYA 271
|
250 260
....*....|....*....|....*.
gi 58415076 240 ILRSIPNKLGGvLALLFSILVLMLVP 265
Cdd:MTH00046 272 MLRSINSKIGG-LVLVLSFLFFLWVP 296
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-164 |
9.73e-78 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 234.20 E-value: 9.73e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYG--SYLQKETWNIGVI 78
Cdd:pfam00033 24 LAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVI 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 79 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFVIAGASMIHLL 158
Cdd:pfam00033 104 LLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLL 183
|
....*.
gi 58415076 159 FLHQTG 164
Cdd:pfam00033 184 FLHETG 189
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
48-213 |
4.46e-50 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 162.80 E-value: 4.46e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 48 SFFFICLYLHVARGMYYGSYLQKE--TWNIGVILLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIW 125
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 126 GGFSVDNATLTRFFAFHF-LLPFVIAGASMIHLLFLHQTGSNNPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVAL 204
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 58415076 205 FSPNLLGDP 213
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
167-281 |
7.88e-42 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 140.86 E-value: 7.88e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 167 NPTGLNSDADKVTFHPYFSYKDLLGFILMLVGLTSVALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 246
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110
....*....|....*....|....*....|....*
gi 58415076 247 KLGGVLALLFSILVLMLVPMLHTSKQRgNTFRPLS 281
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKR-SQFRPLR 114
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
2-168 |
7.26e-40 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 138.31 E-value: 7.26e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 2 ITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKE--TWNIGVIL 79
Cdd:PRK03735 53 VIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLI 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 80 LLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFH-FLLPFVIAGASMIHLL 158
Cdd:PRK03735 133 FFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFL 212
|
170
....*....|
gi 58415076 159 FLHQTGSNNP 168
Cdd:PRK03735 213 MIRKQGISGP 222
|
|
| petB |
CHL00070 |
cytochrome b6 |
1-168 |
5.89e-33 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 120.21 E-value: 5.89e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 1 LITQILTGLFLAMHYTADISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHVARGMYYGSYLQKE--TWNIGVI 78
Cdd:CHL00070 44 FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 79 LLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFH-FLLPFVIAGASMIHL 157
Cdd:CHL00070 124 LAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHF 203
|
170
....*....|.
gi 58415076 158 LFLHQTGSNNP 168
Cdd:CHL00070 204 LMIRKQGISGP 214
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
218-281 |
7.46e-31 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 111.03 E-value: 7.46e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 58415076 218 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPMLHTSKQRGNTFRPLS 281
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLF 64
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
189-278 |
1.14e-12 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 64.43 E-value: 1.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 189 LLGFILMLVGLtsvALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPMLH 268
Cdd:COG5679 45 ILGTIALCIGL---AVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIE 116
|
90
....*....|
gi 58415076 269 TSKQRGNTFR 278
Cdd:COG5679 117 NVNKFQNPFR 126
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
189-278 |
2.73e-12 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 63.48 E-value: 2.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 189 LLGFILMLVGLtsvALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPMLH 268
Cdd:CHL00058 44 ILGTIACNVGL---AVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115
|
90
....*....|
gi 58415076 269 TSKQRGNTFR 278
Cdd:CHL00058 116 NVNKFQNPFR 125
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
189-278 |
8.98e-12 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 61.74 E-value: 8.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58415076 189 LLGFILMLVGLtsvALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPMLH 268
Cdd:TIGR01156 44 ILGTIACVVGL---AVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115
|
90
....*....|
gi 58415076 269 TSKQRGNTFR 278
Cdd:TIGR01156 116 NVNKFQNPFR 125
|
|
| |
