NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|589144308|ref|YP_009003607|]
View 

NADH dehydrogenase subunit 3 (mitochondrion) [Praslinia cooperi]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009581)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 12-114 1.54e-55

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 168.17  E-value: 1.54e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTPLMPLVLST 91
Cdd:MTH00136  14 LSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWAT 93

                         90       100
                 ....*....|....*....|...
gi 589144308  92 LIIMMLSFGLIYEWMQGGLEWAE 114
Cdd:MTH00136  94 AVLILLTLGLIYEWLQGGLEWAE 116
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 12-114 1.54e-55

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 168.17  E-value: 1.54e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTPLMPLVLST 91
Cdd:MTH00136  14 LSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWAT 93

                         90       100
                 ....*....|....*....|...
gi 589144308  92 LIIMMLSFGLIYEWMQGGLEWAE 114
Cdd:MTH00136  94 AVLILLTLGLIYEWLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-111 6.86e-30

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 102.50  E-value: 6.86e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308   18 LISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLpiPWASQLTTPLMPLVLSTLI-IMM 96
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLF--PWAVSFRELGWFGFVEMLIfIAI 79

                          90
                  ....*....|....*
gi 589144308   97 LSFGLIYEWMQGGLE 111
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-112 1.14e-24

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 90.18  E-value: 1.14e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLpiPWASQLTT-PLMPLVLS 90
Cdd:COG0838   18 LALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLF--PWAVVFRElGWFGLIEM 95

                         90       100
                 ....*....|....*....|..
gi 589144308  91 TLIIMMLSFGLIYEWMQGGLEW 112
Cdd:COG0838   96 LVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 12-114 1.54e-55

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 168.17  E-value: 1.54e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTPLMPLVLST 91
Cdd:MTH00136  14 LSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWAT 93

                         90       100
                 ....*....|....*....|...
gi 589144308  92 LIIMMLSFGLIYEWMQGGLEWAE 114
Cdd:MTH00136  94 AVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 12-114 8.04e-54

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 164.01  E-value: 8.04e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTPLMPLVLST 91
Cdd:MTH00069  12 LSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWST 91

                         90       100
                 ....*....|....*....|...
gi 589144308  92 LIIMMLSFGLIYEWMQGGLEWAE 114
Cdd:MTH00069  92 LILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 12-113 1.37e-46

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 145.41  E-value: 1.37e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTPLMPLVLST 91
Cdd:MTH00113  13 LSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWAT 92

                         90       100
                 ....*....|....*....|..
gi 589144308  92 LIIMMLSFGLIYEWMQGGLEWA 113
Cdd:MTH00113  93 IILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 12-114 2.71e-46

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 144.70  E-value: 2.71e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTPLMPLVLST 91
Cdd:MTH00106  13 LASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMAL 92

                         90       100
                 ....*....|....*....|...
gi 589144308  92 LIIMMLSFGLIYEWMQGGLEWAE 114
Cdd:MTH00106  93 LLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 12-114 1.55e-38

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 125.09  E-value: 1.55e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTPLMPLVLST 91
Cdd:MTH00042  14 LTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISL 93

                         90       100
                 ....*....|....*....|...
gi 589144308  92 LIIMMLSFGLIYEWMQGGLEWAE 114
Cdd:MTH00042  94 IFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 12-112 4.96e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 118.85  E-value: 4.96e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTPlmPLVLST 91
Cdd:MTH00203  14 LSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSL--SLLLAF 91

                         90       100
                 ....*....|....*....|.
gi 589144308  92 LIIMMLSFGLIYEWMQGGLEW 112
Cdd:MTH00203  92 LFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 12-114 5.84e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 103.40  E-value: 5.84e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWL-PSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTPLMPLVLS 90
Cdd:MTH00148  14 LSPVLLLLGLVLsKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSFSVWSLTSL 93

                         90       100
                 ....*....|....*....|....
gi 589144308  91 TLIIMMLSFGLIYEWMQGGLEWAE 114
Cdd:MTH00148  94 FIFLLILILGLFHEWNEGSLDWVS 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-111 6.86e-30

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 102.50  E-value: 6.86e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308   18 LISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLpiPWASQLTTPLMPLVLSTLI-IMM 96
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLF--PWAVSFRELGWFGFVEMLIfIAI 79

                          90
                  ....*....|....*
gi 589144308   97 LSFGLIYEWMQGGLE 111
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 29-112 2.21e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 96.77  E-value: 2.21e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  29 DTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTPLMPLVLSTLIIMMLSFGLIYEWMQG 108
Cdd:MTH00161  30 DREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQG 109


                 ....
gi 589144308 109 GLEW 112
Cdd:MTH00161 110 ALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 12-114 3.17e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 91.59  E-value: 3.17e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPS-ITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTPLMPLVLS 90
Cdd:MTH00202  14 ISSLLFLVSWMLSFrSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLLGG 93

                         90       100
                 ....*....|....*....|....
gi 589144308  91 TLIIMMLSFGLIYEWMQGGLEWAE 114
Cdd:MTH00202  94 TIFLLILIGGLIHEWKEGSLDWVK 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-112 1.14e-24

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 90.18  E-value: 1.14e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLpiPWASQLTT-PLMPLVLS 90
Cdd:COG0838   18 LALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLF--PWAVVFRElGWFGLIEM 95

                         90       100
                 ....*....|....*....|..
gi 589144308  91 TLIIMMLSFGLIYEWMQGGLEW 112
Cdd:COG0838   96 LVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 27-113 7.30e-24

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 87.99  E-value: 7.30e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  27 TPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTPLMPLVLSTLIIMMLSFGLIYEWM 106
Cdd:MTH00012  30 TADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWR 109


                 ....*..
gi 589144308 107 QGGLEWA 113
Cdd:MTH00012 110 EGSLDWS 116
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 12-113 3.73e-23

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 86.46  E-value: 3.73e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLlpIPWASQLTTPLMPLVLST 91
Cdd:PRK06602  21 LGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGWLGFVEA 98

                         90       100
                 ....*....|....*....|...
gi 589144308  92 LI-IMMLSFGLIYEWMQGGLEWA 113
Cdd:PRK06602  99 MIfILVLLVGLVYLWRKGALDWE 121
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 12-112 6.50e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 85.53  E-value: 6.50e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTpLMPLVLST 91
Cdd:MTH00055  18 LSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIG-LFGFWVMY 96

                         90       100
                 ....*....|....*....|.
gi 589144308  92 LIIMMLSFGLIYEWMQGGLEW 112
Cdd:MTH00055  97 LFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 12-112 4.45e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 83.57  E-value: 4.45e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTPLMPLVLsT 91
Cdd:MTH00018  13 LSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFGFWTM-V 91

                         90       100
                 ....*....|....*....|.
gi 589144308  92 LIIMMLSFGLIYEWMQGGLEW 112
Cdd:MTH00018  92 GFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 12-112 1.07e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 72.66  E-value: 1.07e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLP-----SITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLTTPLMP 86
Cdd:MTH00030  18 IILLLVSISFTLGnsrigLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSF 97

                         90       100
                 ....*....|....*....|....*.
gi 589144308  87 LVLSTLIImMLSFGLIYEWMQGGLEW 112
Cdd:MTH00030  98 WIVYTFLI-VLAIGLAYEWIKGGLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 32-112 9.77e-13

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 59.69  E-value: 9.77e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  32 KLSPYECGFDPSGSARLP--FSMRFFLVAILFLLFDLEIALLlpIPWASQLTT-PLMPLVLSTLIIMMLSFGLIYEWMQG 108
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFL--YPWAVSFDAlGVFGLVEMALFMLTVFVAYAYVWRRG 114


                 ....
gi 589144308 109 GLEW 112
Cdd:PRK07928 115 GLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 12-112 3.17e-11

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 55.76  E-value: 3.17e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLpiPWASQLTTPLMPLVLST 91
Cdd:CHL00022  20 IPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY--PWAMSFDVLGVSAFIEA 97

                         90       100
                 ....*....|....*....|..
gi 589144308  92 LI-IMMLSFGLIYEWMQGGLEW 112
Cdd:CHL00022  98 LIfVLILIVGLVYAWRKGALEW 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
22-112 2.10e-10

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 53.59  E-value: 2.10e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  22 WLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPipWASQLTT-PLMPLVLSTLIIMMLSFG 100
Cdd:PRK07756  32 MLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKlGLFALIEMLIFVVMLLVG 109

                         90
                 ....*....|..
gi 589144308 101 LIYEWMQGGLEW 112
Cdd:PRK07756 110 LAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
32-112 5.14e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 50.05  E-value: 5.14e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  32 KLSPYECGFDPSGSARlPFSMRFFLVAILFLLFDLEIALLLpiPWASQLTT-PLMPLVLSTLIIMMLSFGLIYEWMQGGL 110
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMF--PWAVDFKLlGLFGLIEMLLFIVLLTIGFIYAWKKGAL 123


                 ..
gi 589144308 111 EW 112
Cdd:PRK08489 124 EW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 12-112 2.37e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 42.96  E-value: 2.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALISFWLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIpwasqLTTPLMPLVLST 91
Cdd:MTH00092  14 LLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL-----LVSDFSSLISFF 88

                         90       100
                 ....*....|....*....|.
gi 589144308  92 LIIMMLSFGLIYEWMQGGLEW 112
Cdd:MTH00092  89 MLMIFIFFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 34-75 1.74e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 40.65  E-value: 1.74e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 589144308  34 SPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIP 75
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 29-112 1.40e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 35.94  E-value: 1.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  29 DTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLpiPWASQLTT-PLMPLVLSTLIIMMLSFGLIYEWMQ 107
Cdd:PRK06432  60 DQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLF--PWAFDFKRlGLIPFIETLIFLAMPLFAVYYAFKM 137


                 ....*
gi 589144308 108 GGLEW 112
Cdd:PRK06432 138 GYMRW 142
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 12-96 1.43e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 35.74  E-value: 1.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 589144308  12 ITLILALIsfwLPSITPDTEKLSPYECGFDPSGSARLPFSMRFFLVAILFLLFDLEIALLLPIPWASQLT-TPLMPLVLS 90
Cdd:PRK06073  23 GTYKLLKL---ILPSKPTPLKVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIAFAPYYTfRDLLLLIVV 99


                 ....*.
gi 589144308  91 TLIIMM 96
Cdd:PRK06073 100 ALVLMY 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH