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Conserved domains on  [gi|598071617|ref|XP_007376637|]
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hypothetical protein SPAPADRAFT_56607 [Spathaspora passalidarum NRRL Y-27907]

Protein Classification

TIP120 domain-containing protein( domain architecture ID 10554403)

TIP120 domain-containing protein similar to Candida albicans cullin-associated NEDD8-dissociated protein 1 (CAND1), also called TBP-interacting protein 120 homolog (TIP120), a key assembly factor of SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complexes that promotes the exchange of the substrate-recognition F-box subunit in SCF complexes, thereby playing a key role in the cellular repertoire of SCF complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TIP120 pfam08623
TATA-binding protein interacting (TIP20); TIP120 (also known as cullin-associated and ...
 1022-1207 2.45e-42

TATA-binding protein interacting (TIP20); TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription.


:

Pssm-ID: 430111  Cd Length: 165  Bit Score: 152.29  E-value: 2.45e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598071617  1022 ILPNLNDSLLPKIFQQLKAEDAFKKVITMGPYKYTMDQGLEIRKLFYEFLYTLfsLDSSTLKqyeVNLSEISQNIVfTGL 1101
Cdd:pfam08623    1 LILPLLDQLLPLLYAETKVKPELIREVQMGPFKHKVDDGLELRKAAYECLYTL--LDTCLDR---LDISEFLDRVI-AGL 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598071617  1102 SDEQaDITVLSCINLIHLIANHESDVIVLIknkddlfTTMVKNLRLQLAKKLSAKASAQDSESYQERIKSIVKLSKKFNQ 1181
Cdd:pfam08623   75 SDEH-DIKMLCNLMLIKLVVLAPDEVLRRL-------DSLVEPLRKTLSKKLKENAVKQELEKQEELIRSVLRASAALNS 146

                          170       180
                   ....*....|....*....|....*.
gi 598071617  1182 IIekvysmnPEIINLVREWREYCQEL 1207
Cdd:pfam08623  147 KI-------PGAEKSHPKWNEFVEWV 165
 
Name Accession Description Interval E-value
TIP120 pfam08623
TATA-binding protein interacting (TIP20); TIP120 (also known as cullin-associated and ...
 1022-1207 2.45e-42

TATA-binding protein interacting (TIP20); TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription.


Pssm-ID: 430111  Cd Length: 165  Bit Score: 152.29  E-value: 2.45e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598071617  1022 ILPNLNDSLLPKIFQQLKAEDAFKKVITMGPYKYTMDQGLEIRKLFYEFLYTLfsLDSSTLKqyeVNLSEISQNIVfTGL 1101
Cdd:pfam08623    1 LILPLLDQLLPLLYAETKVKPELIREVQMGPFKHKVDDGLELRKAAYECLYTL--LDTCLDR---LDISEFLDRVI-AGL 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598071617  1102 SDEQaDITVLSCINLIHLIANHESDVIVLIknkddlfTTMVKNLRLQLAKKLSAKASAQDSESYQERIKSIVKLSKKFNQ 1181
Cdd:pfam08623   75 SDEH-DIKMLCNLMLIKLVVLAPDEVLRRL-------DSLVEPLRKTLSKKLKENAVKQELEKQEELIRSVLRASAALNS 146

                          170       180
                   ....*....|....*....|....*.
gi 598071617  1182 IIekvysmnPEIINLVREWREYCQEL 1207
Cdd:pfam08623  147 KI-------PGAEKSHPKWNEFVEWV 165
 
Name Accession Description Interval E-value
TIP120 pfam08623
TATA-binding protein interacting (TIP20); TIP120 (also known as cullin-associated and ...
 1022-1207 2.45e-42

TATA-binding protein interacting (TIP20); TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription.


Pssm-ID: 430111  Cd Length: 165  Bit Score: 152.29  E-value: 2.45e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598071617  1022 ILPNLNDSLLPKIFQQLKAEDAFKKVITMGPYKYTMDQGLEIRKLFYEFLYTLfsLDSSTLKqyeVNLSEISQNIVfTGL 1101
Cdd:pfam08623    1 LILPLLDQLLPLLYAETKVKPELIREVQMGPFKHKVDDGLELRKAAYECLYTL--LDTCLDR---LDISEFLDRVI-AGL 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 598071617  1102 SDEQaDITVLSCINLIHLIANHESDVIVLIknkddlfTTMVKNLRLQLAKKLSAKASAQDSESYQERIKSIVKLSKKFNQ 1181
Cdd:pfam08623   75 SDEH-DIKMLCNLMLIKLVVLAPDEVLRRL-------DSLVEPLRKTLSKKLKENAVKQELEKQEELIRSVLRASAALNS 146

                          170       180
                   ....*....|....*....|....*.
gi 598071617  1182 IIekvysmnPEIINLVREWREYCQEL 1207
Cdd:pfam08623  147 KI-------PGAEKSHPKWNEFVEWV 165
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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