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Conserved domains on  [gi|62548316|ref|NP_038651|]
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alpha-1-acid glycoprotein 3 isoform 2 precursor [Mus musculus]

Protein Classification

lipocalin/fatty-acid binding family protein( domain architecture ID 14443811)

lipocalin/fatty-acid binding family protein such as lipocalins, which are transporters for small hydrophobic molecules, including lipids, steroid hormones, bilins, and retinoids

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
lipocalin_AGP-like cd19451
alpha1-acid glycoprotein and similar proteins; Alpha1-acid glycoprotein (AGP), also known as ...
21-193 8.78e-82

alpha1-acid glycoprotein and similar proteins; Alpha1-acid glycoprotein (AGP), also known as orosomucoid, has many important biological roles such as in the acute-phase reaction in response to inflammation, in immune regulation, in drug-binding and drug-transportation, in regulating sphingolipid synthesis and metabolism, and in maintaining the capillary barrier. This subgroup belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


:

Pssm-ID: 381226  Cd Length: 173  Bit Score: 240.72  E-value: 8.78e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62548316  21 PEHAINIGDPITNETLSWLSGKWFLIAVADSDPDYRQEIQKVQTIFFYLTLNLINDTMELREYHTKDDHCVYNSNLLGFQ 100
Cdd:cd19451   1 PACANLTAAPITNATLDQLSGKWFYIGSAFRNPEYKKEVQEIQAAFFYLTPNKTEDTILLREYQTIGDQCVYNSSKLTVQ 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62548316 101 RENGTLFKYEGEVETLLHLRVLEKHGAIMLFFDLKDEKKRGLSLSARRPDIPPELREVFQKAVTHVGMDESEIIFVDWKK 180
Cdd:cd19451  81 RENGTLSKYEGGVEHVAHLLLLRDPGTFMLAFFPEDEKNVGLSFYADKPEATPEQLKEFYEALKCLGMDESEIMYTDWKK 160
                       170
                ....*....|...
gi 62548316 181 DRCSEQEKKHLEL 193
Cdd:cd19451 161 DKCEPLEKQHEEE 173
 
Name Accession Description Interval E-value
lipocalin_AGP-like cd19451
alpha1-acid glycoprotein and similar proteins; Alpha1-acid glycoprotein (AGP), also known as ...
21-193 8.78e-82

alpha1-acid glycoprotein and similar proteins; Alpha1-acid glycoprotein (AGP), also known as orosomucoid, has many important biological roles such as in the acute-phase reaction in response to inflammation, in immune regulation, in drug-binding and drug-transportation, in regulating sphingolipid synthesis and metabolism, and in maintaining the capillary barrier. This subgroup belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381226  Cd Length: 173  Bit Score: 240.72  E-value: 8.78e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62548316  21 PEHAINIGDPITNETLSWLSGKWFLIAVADSDPDYRQEIQKVQTIFFYLTLNLINDTMELREYHTKDDHCVYNSNLLGFQ 100
Cdd:cd19451   1 PACANLTAAPITNATLDQLSGKWFYIGSAFRNPEYKKEVQEIQAAFFYLTPNKTEDTILLREYQTIGDQCVYNSSKLTVQ 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62548316 101 RENGTLFKYEGEVETLLHLRVLEKHGAIMLFFDLKDEKKRGLSLSARRPDIPPELREVFQKAVTHVGMDESEIIFVDWKK 180
Cdd:cd19451  81 RENGTLSKYEGGVEHVAHLLLLRDPGTFMLAFFPEDEKNVGLSFYADKPEATPEQLKEFYEALKCLGMDESEIMYTDWKK 160
                       170
                ....*....|...
gi 62548316 181 DRCSEQEKKHLEL 193
Cdd:cd19451 161 DKCEPLEKQHEEE 173
Lipocalin pfam00061
Lipocalin / cytosolic fatty-acid binding protein family; Lipocalins are transporters for small ...
40-180 6.63e-23

Lipocalin / cytosolic fatty-acid binding protein family; Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The family also encompasses the enzyme prostaglandin D synthase (EC:5.3.99.2). Alignment subsumes both the lipocalin and fatty acid binding protein signatures from PROSITE. This is supported on structural and functional grounds. The structure is an eight-stranded beta barrel.


Pssm-ID: 395015  Cd Length: 143  Bit Score: 89.42  E-value: 6.63e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62548316    40 SGKWFLIAVAdSDPDYRQEIQKVQTIFFYLTLnLINDTMELREYHTKDDHCVYNSNLLGFQRENGTLFKYEGEVETLLHL 119
Cdd:pfam00061   1 SGKWYLIASA-NFNELEEEMKALGVGFATIKV-LENGNLPVTEITKEGGKCKTVSVTFKKTEEPGKLGVEFDEYAGGRKV 78
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 62548316   120 RVLEKHGAIMLFFDLKDEKK----RGLSLSARRPDIPPELREVFQKAVTHVGMDESEIIFVDWKK 180
Cdd:pfam00061  79 KVLTTDYDNYLIFYQKGDKDgkttIVRELYGRDPELSPELLEKFKKFLKELGIDEENIVRLYQKD 143
 
Name Accession Description Interval E-value
lipocalin_AGP-like cd19451
alpha1-acid glycoprotein and similar proteins; Alpha1-acid glycoprotein (AGP), also known as ...
21-193 8.78e-82

alpha1-acid glycoprotein and similar proteins; Alpha1-acid glycoprotein (AGP), also known as orosomucoid, has many important biological roles such as in the acute-phase reaction in response to inflammation, in immune regulation, in drug-binding and drug-transportation, in regulating sphingolipid synthesis and metabolism, and in maintaining the capillary barrier. This subgroup belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381226  Cd Length: 173  Bit Score: 240.72  E-value: 8.78e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62548316  21 PEHAINIGDPITNETLSWLSGKWFLIAVADSDPDYRQEIQKVQTIFFYLTLNLINDTMELREYHTKDDHCVYNSNLLGFQ 100
Cdd:cd19451   1 PACANLTAAPITNATLDQLSGKWFYIGSAFRNPEYKKEVQEIQAAFFYLTPNKTEDTILLREYQTIGDQCVYNSSKLTVQ 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62548316 101 RENGTLFKYEGEVETLLHLRVLEKHGAIMLFFDLKDEKKRGLSLSARRPDIPPELREVFQKAVTHVGMDESEIIFVDWKK 180
Cdd:cd19451  81 RENGTLSKYEGGVEHVAHLLLLRDPGTFMLAFFPEDEKNVGLSFYADKPEATPEQLKEFYEALKCLGMDESEIMYTDWKK 160
                       170
                ....*....|...
gi 62548316 181 DRCSEQEKKHLEL 193
Cdd:cd19451 161 DKCEPLEKQHEEE 173
Lipocalin pfam00061
Lipocalin / cytosolic fatty-acid binding protein family; Lipocalins are transporters for small ...
40-180 6.63e-23

Lipocalin / cytosolic fatty-acid binding protein family; Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The family also encompasses the enzyme prostaglandin D synthase (EC:5.3.99.2). Alignment subsumes both the lipocalin and fatty acid binding protein signatures from PROSITE. This is supported on structural and functional grounds. The structure is an eight-stranded beta barrel.


Pssm-ID: 395015  Cd Length: 143  Bit Score: 89.42  E-value: 6.63e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62548316    40 SGKWFLIAVAdSDPDYRQEIQKVQTIFFYLTLnLINDTMELREYHTKDDHCVYNSNLLGFQRENGTLFKYEGEVETLLHL 119
Cdd:pfam00061   1 SGKWYLIASA-NFNELEEEMKALGVGFATIKV-LENGNLPVTEITKEGGKCKTVSVTFKKTEEPGKLGVEFDEYAGGRKV 78
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 62548316   120 RVLEKHGAIMLFFDLKDEKK----RGLSLSARRPDIPPELREVFQKAVTHVGMDESEIIFVDWKK 180
Cdd:pfam00061  79 KVLTTDYDNYLIFYQKGDKDgkttIVRELYGRDPELSPELLEKFKKFLKELGIDEENIVRLYQKD 143
lipocalin_ApoM_AGP cd19415
apolipoprotein M and alpha1-acid glycoprotein family; Apolipoprotein M (ApoM) is mainly found ...
30-175 6.66e-17

apolipoprotein M and alpha1-acid glycoprotein family; Apolipoprotein M (ApoM) is mainly found in high-density lipoproteins (HDL) and is expressed in the liver and in the kidney; it is associated to a lesser extend with low density lipids and triglyceride rich lipoproteins. ApoM is involved in lipid transport and can bind sphingosine-1-phosphate, myristic acid, palmitic acid and stearic acid, retinol, all-trans-retinoic acid and 9-cis-retinoic acid. Alpha1-acid glycoprotein (AGP), also known as orosomucoid, has many important biological roles such as in the acute-phase reaction in response to inflammation, in immune regulation, in drug-binding and drug-transportation, in regulating sphingolipid synthesis and metabolism, and in maintaining the capillary barrier. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381190  Cd Length: 153  Bit Score: 74.30  E-value: 6.66e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62548316  30 PITNETLSWLSGKWFLIAVADSDPDYRQEIQKVQTIFFYLTLNLINDTMELREYHTKDDHCVYNSNLLGFQrENGTLFKY 109
Cdd:cd19415   7 PLSLADPSQILGKWVFIAGASDSEEYLAILKLVDSSWVNLTASSDEDTIVLRQGNRLNGKCIYSTVNATLE-GSGTTFTY 85
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62548316 110 EGEVETLLHLRVLEKHGAIMLFFD--LKDEKKRGLSLSARRPDIPPELREVFQKAVTHVGMDEsEIIF 175
Cdd:cd19415  86 TNASETSTGLLLTSCPDCLLLNFNstSGEEKGRSLYLYSRTGTLEKSELEEFKKQAECLGFSP-PFIY 152
lipocalin_ApoM cd19450
Apolipoprotein M; Apolipoprotein M (ApoM) is mainly found in high-density lipoproteins (HDL) ...
41-183 7.52e-08

Apolipoprotein M; Apolipoprotein M (ApoM) is mainly found in high-density lipoproteins (HDL) and is expressed in the liver and the kidney; it is associated to a lesser extend with low density lipids and triglyceride rich lipoproteins. It is involved in lipid transport and can bind sphingosine-1-phosphate, myristic acid, palmitic acid and stearic acid, retinol, all-trans-retinoic acid and 9-cis-retinoic acid. This subgroup belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381225  Cd Length: 161  Bit Score: 49.78  E-value: 7.52e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62548316  41 GKWFLIAVADSDPDYRQEIQKVQTIFFYLTLNlINDTMELREYHTKDDHCVYNS-NLLGFQRENGTLFKYEGEVETLLHL 119
Cdd:cd19450  19 GRWYFVAAAAWDEDDLATFKPLDNIVFNMQKG-SNDTLQLTATIRIGGQCVPRKwTYRLTEHTGSFELRTEGRPDMKWDG 97
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 62548316 120 RVLEKHGAIMLFFDLKDEKKRGLsLSARRPDIPPELREVFQKAVTHVGMdeSEIIFVDWKKDRC 183
Cdd:cd19450  98 FSANCPGCIILQETDQEEYNRFL-LYARSPHPPEECIEEFKSKTSCLGM--EDFLLTPLQQGYC 158
lipocalin_A1M-like cd19418
lipocalin domain of alpha1-microglobulin and similar proteins; Alpha(1)-microglobulin (A1M, ...
33-182 9.35e-04

lipocalin domain of alpha1-microglobulin and similar proteins; Alpha(1)-microglobulin (A1M, also known as protein AMBP, alpha-1 microglycoprotein, and protein HC), has immunosuppressive properties, such as inhibition of antigen induced lymphocyte cell-proliferation, cytokine secretion, and oxidative burst of neutrophils. A1M may participate in the reducing and scavenging of biological pro-oxidants such as heme and heme-proteins. It binds heme strongly, and a C-terminally processed form of the protein degrades the heme. It can reduce cytochrome C, nitroblue tetrazolium, methemoglobin and free iron, using NADH, NADPH or ascorbate as cofactor. Intravenous administration of recombinant A1M in animal models eliminates or significantly reduces the manifestations of preeclampsia. A1M is a useful biomarker in clinical diagnostics for monitoring pre-eclampsia, hepatitis E, renal tubular dysfunction, and renal toxicity. A1M belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381193  Cd Length: 163  Bit Score: 38.20  E-value: 9.35e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62548316  33 NETLSWLSGKWFLIAVADSDPDYR-------------------QEIQKVQTIFFYLTLNLINDTMELREYHTKDDhcvYN 93
Cdd:cd19418   7 NFNLSRIYGKWYDLAVGSTCPWLKrikdkmaigtlvlqegatgAELSMTRTRLRRGTCEEISGEYEKTDTPGKFL---YH 83
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62548316  94 SNllgfqRENGTLFKYegevetLLHLRVLEKHGAIMLFFDLKDEKKRGLSLSARRPDIPPELREVFQKAVTHVGMDESEI 173
Cdd:cd19418  84 KS-----KWNATVDAY------VVHTNYDEYAIFLMKKFKRHGEPTTTLKLYGRTPQLRPTLLQDFRTLALEQGIPEDSI 152

                ....*....
gi 62548316 174 IFvdwKKDR 182
Cdd:cd19418 153 II---KADK 158
lipocalin_FABP cd00301
lipocalin/cytosolic fatty acid-binding protein family; Lipocalins are diverse, mainly low ...
38-147 1.06e-03

lipocalin/cytosolic fatty acid-binding protein family; Lipocalins are diverse, mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules as well as membrane bound-receptors. They have a large beta-barrel ligand-binding cavity. Members include retinol-binding protein, retinoic acid-binding protein, complement protein C8 gamma, Can f 2, apolipoprotein D, extracellular fatty acid-binding protein, beta-lactoglobulin, oderant-binding protein, and bacterial lipocalin Blc. Lipocalins are involved in many important processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty acid-binding proteins also bind hydrophobic ligands in a non-covalent, reversible manner, and are involved in protection and shuttling of fatty acids within the cell, and in acquisition and removal of fatty acids from intracellular sites.


Pssm-ID: 381182  Cd Length: 109  Bit Score: 37.52  E-value: 1.06e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62548316  38 WLSGKWFLIAVADSDPdyrqEIQKVQTIFFYLTLNlINDTMELREYHTKDDHCVYNSNLLGFQRENGTlFKYEGEVETL- 116
Cdd:cd00301   1 KFSGKWYEVASASNAP----EEDEGKCTTAEYTLE-GNGNLKVTNSFVRDGVCKSITGTLKKTDGPGK-FTVTYPGYTGk 74
                        90       100       110
                ....*....|....*....|....*....|....*
gi 62548316 117 LHLRVLE---KHGAIMLFF-DLKDEKKRGLSLSAR 147
Cdd:cd00301  75 NELYVLStdyDNYAIVYSCkNLDGGHTVVAWLLSR 109
lipocalin_2-like cd19457
lipocalin 2 and similar proteins; Lipocalin-2 (LCN2, also known as siderocalin, uterocalin, ...
41-177 1.44e-03

lipocalin 2 and similar proteins; Lipocalin-2 (LCN2, also known as siderocalin, uterocalin, oncogene 24p3, and neutrophil gelatinase-associated lipocalin) is expressed in renal, endothelial, liver, smooth muscle cells, cardiomyocytes, in various populations of immune cells and dendritic cells. Roles ascribed to LCN2, include chemotactic and bacteriostatic effects, and iron trafficking. LCN2 can also act as a growth factor. It plays an key role in the pathophysiology of renal and cardiovascular diseases, and is involved in various deleterious processes, such as inflammation and fibrosis. It is used as a renal injury biomarker. This subgroup belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.


Pssm-ID: 381232  Cd Length: 173  Bit Score: 38.12  E-value: 1.44e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62548316  41 GKWFLIAVADSDPDYRQEIQkvqtiffyltLNLINDTMELREYHT--------KDDHCVYNSNLL--GFQRENGTL---F 107
Cdd:cd19457  26 GKWYVIGVAGNTIQNESLSQ----------LTMYSTIYELKDDHSynvtsilfRDKGCEHWIRTFvpSVQPGQFTLgniT 95
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 62548316 108 KYEGeVETLLhLRVLE---KHGAiMLFFDLKDEKKR--GLSLSARRPDIPPELREVFQKAVTHVGMDESEIIFVD 177
Cdd:cd19457  96 SYPG-LQSYT-VRVVAtdyNQFA-MVFFKKTSENRVyfEITLYGRTKELSPELKERFIKFSKSLGLPDDNIIFTV 167
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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