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Conserved domains on  [gi|6435735]
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Chain A, Invasin

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Invasin_D3 pfam09134
Invasin, domain 3; Members of this family adopt a structure consisting of an ...
 105-200 1.44e-19

Invasin, domain 3; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria.


:

Pssm-ID: 430426 [Multi-domain]  Cd Length: 98  Bit Score: 83.52  E-value: 1.44e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735    105 AADKSTLAAVPTSIIADGLMASTITLELKDTYGDPQ--AGANVAFDTTLGNMGVITDHNDGTYSAPLTS-TTLGVATVTV 181
Cdd:pfam09134   1 DPAKSTIAADPASIVADGVSTSTLTVTLKDANGNPLtvGGATVTFSTTAGTLSAVTDNGDGTYTATLTSgTTAGTATVTF 80

                          90
                  ....*....|....*....
gi 6435735    182 KVDGAAFSVpSVTVNFTAD 200
Cdd:pfam09134  81 TVNGVAGAA-TATVTFVAG 98
BID_1 smart00634
Bacterial Ig-like domain (group 1);
10-98 6.94e-19

Bacterial Ig-like domain (group 1);


:

Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 81.22  E-value: 6.94e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735      10 TLTAAVIGDGAPANGKTAITVEFTVADFEGKPLAGQEVVITTNNG--ALPNKITEKTDANGVARIALTNTTDGVTVVTAE 87
Cdd:smart00634   2 VTTLTADKDTAVANGSDAITLTATVTDANGNPVAGQEVTFTTPSGgaLTLSKGTATTDANGIATVTLTSTTAGVYTVTAS 81

                           90
                   ....*....|.
gi 6435735      88 VEGQRQSVDTH 98
Cdd:smart00634  82 LENGSSSVKQV 92
Invasin_D3 super family cl23771
Invasin, domain 3; Members of this family adopt a structure consisting of an ...
 208-285 9.21e-04

Invasin, domain 3; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria.


The actual alignment was detected with superfamily member smart00634:

Pssm-ID: 474048 [Multi-domain]  Cd Length: 92  Bit Score: 38.46  E-value: 9.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735     208 SSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSISPITEQPDS---YTATVVGNSVGDVTITPQV 284
Cdd:smart00634   3 TTLTADKDTAVANGSDAITLTATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDAngiATVTLTSTTAGVYTVTASL 82


                   .
gi 6435735     285 D 285
Cdd:smart00634  83 E 83
 
Name Accession Description Interval E-value
Invasin_D3 pfam09134
Invasin, domain 3; Members of this family adopt a structure consisting of an ...
 105-200 1.44e-19

Invasin, domain 3; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria.


Pssm-ID: 430426 [Multi-domain]  Cd Length: 98  Bit Score: 83.52  E-value: 1.44e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735    105 AADKSTLAAVPTSIIADGLMASTITLELKDTYGDPQ--AGANVAFDTTLGNMGVITDHNDGTYSAPLTS-TTLGVATVTV 181
Cdd:pfam09134   1 DPAKSTIAADPASIVADGVSTSTLTVTLKDANGNPLtvGGATVTFSTTAGTLSAVTDNGDGTYTATLTSgTTAGTATVTF 80

                          90
                  ....*....|....*....
gi 6435735    182 KVDGAAFSVpSVTVNFTAD 200
Cdd:pfam09134  81 TVNGVAGAA-TATVTFVAG 98
BID_1 smart00634
Bacterial Ig-like domain (group 1);
10-98 6.94e-19

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 81.22  E-value: 6.94e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735      10 TLTAAVIGDGAPANGKTAITVEFTVADFEGKPLAGQEVVITTNNG--ALPNKITEKTDANGVARIALTNTTDGVTVVTAE 87
Cdd:smart00634   2 VTTLTADKDTAVANGSDAITLTATVTDANGNPVAGQEVTFTTPSGgaLTLSKGTATTDANGIATVTLTSTTAGVYTVTAS 81

                           90
                   ....*....|.
gi 6435735      88 VEGQRQSVDTH 98
Cdd:smart00634  82 LENGSSSVKQV 92
BID_1 smart00634
Bacterial Ig-like domain (group 1);
108-193 2.16e-14

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 68.51  E-value: 2.16e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735     108 KSTLAAVPTSIIADGLMASTITLELKDTYGDPQAGANVAFDTTLG-----NMGVITDHNDGTYSAPLTSTTLGVATVTVK 182
Cdd:smart00634   2 VTTLTADKDTAVANGSDAITLTATVTDANGNPVAGQEVTFTTPSGgaltlSKGTATTDANGIATVTLTSTTAGVYTVTAS 81

                           90
                   ....*....|.
gi 6435735     183 VDGAAFSVPSV 193
Cdd:smart00634  82 LENGSSSVKQV 92
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 22-86 8.54e-11

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 57.56  E-value: 8.54e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6435735     22 ANGKTAITVEFTVADFEGKPLAGQEVVITTNNGALPNKiTEKTDANGVARIALTNTTDGVTVVTA 86
Cdd:pfam02369   1 ADGVDTNTVTATVTDANGNPVPGATVTFSASGGTLSAS-SGTTDANGQATVTLTSTKAGTVTVTA 64
Ve_IatC_Nterm NF040978
inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve ...
 29-175 1.52e-07

inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve secretion protein) IatC contains a central region that is variable in the number of repeats seen, and averages about 3000 amino acids in length. This HMM describes a mostly non-repetitive region N-teminal to the architectural differences from different repeat counts are seen. IatC can contribute to biofilm formation.


Pssm-ID: 468908 [Multi-domain]  Cd Length: 1065  Bit Score: 54.04  E-value: 1.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735     29 TVEFTVADFEGKPLAGQEVVITTNNGAL----PNKITEKTDANGVARIALTNTTDGVTVVTAEVEGQRQSVDTHFVKGTI 104
Cdd:NF040978  761 TVAVTVRDVHQNLLQGQNVTFTVVNGAAvfadPNGGIVTTDKDGIASVNLASDQAVNSLIKAEINGSSQSVEVSFITGDI 840

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6435735    105 AADKSTLAAVPTSIIADGLMASTITL-----ELKDTYGDPQAGANV--AFDTTLGNMGVITDHNDGTYSAPLTSTTLG 175
Cdd:NF040978  841 SQLTSTIKTDDVSYTAGGKIKVSVTLmdeqkNLVKGMASLLAGSGVveVSGTDKNETGNWSEESDGVYTTTRTAKIAG 918
COG5266 COG5266
Uncharacterized protein, contains GH25 family domain [General function prediction only];
37-90 1.63e-05

Uncharacterized protein, contains GH25 family domain [General function prediction only];


Pssm-ID: 444079 [Multi-domain]  Cd Length: 261  Bit Score: 46.62  E-value: 1.63e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 6435735   37 FEGKPLAGQEVVITTNNGALPNKITE---KTDANGVARIALTNttDGVTVVTAEVEG 90
Cdd:COG5266 185 YDGKPLAGAEVEVEYGGDRYPDDAGAqvlKTDADGKFTFTLPE--AGLWLLAALHKD 239
BID_1 smart00634
Bacterial Ig-like domain (group 1);
208-285 9.21e-04

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 38.46  E-value: 9.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735     208 SSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSISPITEQPDS---YTATVVGNSVGDVTITPQV 284
Cdd:smart00634   3 TTLTADKDTAVANGSDAITLTATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDAngiATVTLTSTTAGVYTVTASL 82


                   .
gi 6435735     285 D 285
Cdd:smart00634  83 E 83
Ve_IatC_Nterm NF040978
inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve ...
 103-277 4.10e-03

inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve secretion protein) IatC contains a central region that is variable in the number of repeats seen, and averages about 3000 amino acids in length. This HMM describes a mostly non-repetitive region N-teminal to the architectural differences from different repeat counts are seen. IatC can contribute to biofilm formation.


Pssm-ID: 468908 [Multi-domain]  Cd Length: 1065  Bit Score: 39.79  E-value: 4.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735    103 TIAADKSTLAAVPTSIIADGLMA----STITLELKDTYGDPQAGANVAFDTTLG-------NMGVITDHNDGTYSAPLTS 171
Cdd:NF040978  733 SIAGDKDTAKIAAMQITANNAVArrdhNTVAVTVRDVHQNLLQGQNVTFTVVNGaavfadpNGGIVTTDKDGIASVNLAS 812

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735    172 TTLGVATVTVKVDGaafSVPSVTVNFTADpipDAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNG 251
Cdd:NF040978  813 DQAVNSLIKAEING---SSQSVEVSFITG---DISQLTSTIKTDDVSYTAGGKIKVSVTLMDEQKNLVKGMASLLAGSGV 886

                         170       180       190
                  ....*....|....*....|....*....|...
gi 6435735    252 VPVS------ISPITEQPDS-YTATVVGNSVGD 277
Cdd:NF040978  887 VEVSgtdkneTGNWSEESDGvYTTTRTAKIAGD 919
 
Name Accession Description Interval E-value
Invasin_D3 pfam09134
Invasin, domain 3; Members of this family adopt a structure consisting of an ...
 105-200 1.44e-19

Invasin, domain 3; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria.


Pssm-ID: 430426 [Multi-domain]  Cd Length: 98  Bit Score: 83.52  E-value: 1.44e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735    105 AADKSTLAAVPTSIIADGLMASTITLELKDTYGDPQ--AGANVAFDTTLGNMGVITDHNDGTYSAPLTS-TTLGVATVTV 181
Cdd:pfam09134   1 DPAKSTIAADPASIVADGVSTSTLTVTLKDANGNPLtvGGATVTFSTTAGTLSAVTDNGDGTYTATLTSgTTAGTATVTF 80

                          90
                  ....*....|....*....
gi 6435735    182 KVDGAAFSVpSVTVNFTAD 200
Cdd:pfam09134  81 TVNGVAGAA-TATVTFVAG 98
BID_1 smart00634
Bacterial Ig-like domain (group 1);
10-98 6.94e-19

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 81.22  E-value: 6.94e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735      10 TLTAAVIGDGAPANGKTAITVEFTVADFEGKPLAGQEVVITTNNG--ALPNKITEKTDANGVARIALTNTTDGVTVVTAE 87
Cdd:smart00634   2 VTTLTADKDTAVANGSDAITLTATVTDANGNPVAGQEVTFTTPSGgaLTLSKGTATTDANGIATVTLTSTTAGVYTVTAS 81

                           90
                   ....*....|.
gi 6435735      88 VEGQRQSVDTH 98
Cdd:smart00634  82 LENGSSSVKQV 92
BID_1 smart00634
Bacterial Ig-like domain (group 1);
108-193 2.16e-14

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 68.51  E-value: 2.16e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735     108 KSTLAAVPTSIIADGLMASTITLELKDTYGDPQAGANVAFDTTLG-----NMGVITDHNDGTYSAPLTSTTLGVATVTVK 182
Cdd:smart00634   2 VTTLTADKDTAVANGSDAITLTATVTDANGNPVAGQEVTFTTPSGgaltlSKGTATTDANGIATVTLTSTTAGVYTVTAS 81

                           90
                   ....*....|.
gi 6435735     183 VDGAAFSVPSV 193
Cdd:smart00634  82 LENGSSSVKQV 92
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 22-86 8.54e-11

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 57.56  E-value: 8.54e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6435735     22 ANGKTAITVEFTVADFEGKPLAGQEVVITTNNGALPNKiTEKTDANGVARIALTNTTDGVTVVTA 86
Cdd:pfam02369   1 ADGVDTNTVTATVTDANGNPVPGATVTFSASGGTLSAS-SGTTDANGQATVTLTSTKAGTVTVTA 64
Ve_IatC_Nterm NF040978
inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve ...
 29-175 1.52e-07

inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve secretion protein) IatC contains a central region that is variable in the number of repeats seen, and averages about 3000 amino acids in length. This HMM describes a mostly non-repetitive region N-teminal to the architectural differences from different repeat counts are seen. IatC can contribute to biofilm formation.


Pssm-ID: 468908 [Multi-domain]  Cd Length: 1065  Bit Score: 54.04  E-value: 1.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735     29 TVEFTVADFEGKPLAGQEVVITTNNGAL----PNKITEKTDANGVARIALTNTTDGVTVVTAEVEGQRQSVDTHFVKGTI 104
Cdd:NF040978  761 TVAVTVRDVHQNLLQGQNVTFTVVNGAAvfadPNGGIVTTDKDGIASVNLASDQAVNSLIKAEINGSSQSVEVSFITGDI 840

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6435735    105 AADKSTLAAVPTSIIADGLMASTITL-----ELKDTYGDPQAGANV--AFDTTLGNMGVITDHNDGTYSAPLTSTTLG 175
Cdd:NF040978  841 SQLTSTIKTDDVSYTAGGKIKVSVTLmdeqkNLVKGMASLLAGSGVveVSGTDKNETGNWSEESDGVYTTTRTAKIAG 918
Big_1 pfam02369
Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like ...
 120-181 1.33e-05

Bacterial Ig-like domain (group 1); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial surface proteins such as intimins and invasins involved in pathogenicity.


Pssm-ID: 460541 [Multi-domain]  Cd Length: 64  Bit Score: 42.92  E-value: 1.33e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6435735    120 ADGLMASTITLELKDTYGDPQAGANVAFDTTLGNMG---VITDHNdGTYSAPLTSTTLGVATVTV 181
Cdd:pfam02369   1 ADGVDTNTVTATVTDANGNPVPGATVTFSASGGTLSassGTTDAN-GQATVTLTSTKAGTVTVTA 64
COG5266 COG5266
Uncharacterized protein, contains GH25 family domain [General function prediction only];
37-90 1.63e-05

Uncharacterized protein, contains GH25 family domain [General function prediction only];


Pssm-ID: 444079 [Multi-domain]  Cd Length: 261  Bit Score: 46.62  E-value: 1.63e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 6435735   37 FEGKPLAGQEVVITTNNGALPNKITE---KTDANGVARIALTNttDGVTVVTAEVEG 90
Cdd:COG5266 185 YDGKPLAGAEVEVEYGGDRYPDDAGAqvlKTDADGKFTFTLPE--AGLWLLAALHKD 239
DUF4198 pfam10670
Domain of unknown function (DUF4198); This family was previously missannotated in Pfam as NikM.
 37-90 8.63e-05

Domain of unknown function (DUF4198); This family was previously missannotated in Pfam as NikM.


Pssm-ID: 463175 [Multi-domain]  Cd Length: 207  Bit Score: 43.50  E-value: 8.63e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 6435735     37 FEGKPLAGQEVVITTNNGAL---PNKITEKTDANGVARIALTNttDGVTVVTAEVEG 90
Cdd:pfam10670 153 FDGKPLAGAEVEVEYGGTGYrdaPNDAFVKTDADGVFTFTIPK--AGWWLLAALHED 207
BID_1 smart00634
Bacterial Ig-like domain (group 1);
208-285 9.21e-04

Bacterial Ig-like domain (group 1);


Pssm-ID: 214751 [Multi-domain]  Cd Length: 92  Bit Score: 38.46  E-value: 9.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735     208 SSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSISPITEQPDS---YTATVVGNSVGDVTITPQV 284
Cdd:smart00634   3 TTLTADKDTAVANGSDAITLTATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDAngiATVTLTSTTAGVYTVTASL 82


                   .
gi 6435735     285 D 285
Cdd:smart00634  83 E 83
Ve_IatC_Nterm NF040978
inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve ...
 103-277 4.10e-03

inverse autotransporter adhesin IatC N-terminal domain; The inverse autotransporter (type Ve secretion protein) IatC contains a central region that is variable in the number of repeats seen, and averages about 3000 amino acids in length. This HMM describes a mostly non-repetitive region N-teminal to the architectural differences from different repeat counts are seen. IatC can contribute to biofilm formation.


Pssm-ID: 468908 [Multi-domain]  Cd Length: 1065  Bit Score: 39.79  E-value: 4.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735    103 TIAADKSTLAAVPTSIIADGLMA----STITLELKDTYGDPQAGANVAFDTTLG-------NMGVITDHNDGTYSAPLTS 171
Cdd:NF040978  733 SIAGDKDTAKIAAMQITANNAVArrdhNTVAVTVRDVHQNLLQGQNVTFTVVNGaavfadpNGGIVTTDKDGIASVNLAS 812

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735    172 TTLGVATVTVKVDGaafSVPSVTVNFTADpipDAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNG 251
Cdd:NF040978  813 DQAVNSLIKAEING---SSQSVEVSFITG---DISQLTSTIKTDDVSYTAGGKIKVSVTLMDEQKNLVKGMASLLAGSGV 886

                         170       180       190
                  ....*....|....*....|....*....|...
gi 6435735    252 VPVS------ISPITEQPDS-YTATVVGNSVGD 277
Cdd:NF040978  887 VEVSgtdkneTGNWSEESDGvYTTTRTAKIAGD 919
Invasin_D3 pfam09134
Invasin, domain 3; Members of this family adopt a structure consisting of an ...
 12-91 5.02e-03

Invasin, domain 3; Members of this family adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria.


Pssm-ID: 430426 [Multi-domain]  Cd Length: 98  Bit Score: 36.53  E-value: 5.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6435735     12 TAAVIGDGAPANGKTAITVEFTVADFEGKPL--AGQEVVITTNNGALPnkiTEKTDANGVARIALT-NTTDGVTVVTAEV 88
Cdd:pfam09134   6 TIAADPASIVADGVSTSTLTVTLKDANGNPLtvGGATVTFSTTAGTLS---AVTDNGDGTYTATLTsGTTAGTATVTFTV 82


                  ...
gi 6435735     89 EGQ 91
Cdd:pfam09134  83 NGV 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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