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Conserved domains on  [gi|6980909]
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Chain M, PROTEIN (NEUROTROPHIN-4)

Protein Classification

nerve growth factor family protein( domain architecture ID 10446556)

nerve growth factor family protein similar to brain-derived neurotrophic factor (BDNF) and venom nerve growth factor (v-NGF)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NGF pfam00243
Nerve growth factor family;
9-128 1.38e-56

Nerve growth factor family;


:

Pssm-ID: 425551  Cd Length: 112  Bit Score: 171.37  E-value: 1.38e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6980909      9 SRRGELAVCDAVSGWVTDRRTAVDLRGREVEVLGEVPAAGGsPLRQYFFETRCKADNAeeggpgAGGGGCRGVDRRHWVS 88
Cdd:pfam00243   1 SHRGEYSVCDSVSVWVTNKTTAVDIRGNEVTVLGEVKTNNG-VLKQYFFETKCRDGPP------GGGSGCRGIDKRHWNS 73
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 6980909     89 ECKAKQSYVRALTADaQGRVGWRWIRIDTACVCTLLSRTG 128
Cdd:pfam00243  74 YCKTKQSFVRALTID-KNKVGWRWIRIDTSCVCVLSRKSG 112
 
Name Accession Description Interval E-value
NGF pfam00243
Nerve growth factor family;
9-128 1.38e-56

Nerve growth factor family;


Pssm-ID: 425551  Cd Length: 112  Bit Score: 171.37  E-value: 1.38e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6980909      9 SRRGELAVCDAVSGWVTDRRTAVDLRGREVEVLGEVPAAGGsPLRQYFFETRCKADNAeeggpgAGGGGCRGVDRRHWVS 88
Cdd:pfam00243   1 SHRGEYSVCDSVSVWVTNKTTAVDIRGNEVTVLGEVKTNNG-VLKQYFFETKCRDGPP------GGGSGCRGIDKRHWNS 73
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 6980909     89 ECKAKQSYVRALTADaQGRVGWRWIRIDTACVCTLLSRTG 128
Cdd:pfam00243  74 YCKTKQSFVRALTID-KNKVGWRWIRIDTSCVCVLSRKSG 112
NGF smart00140
Nerve growth factor (NGF or beta-NGF); NGF is important for the development and maintenance of ...
9-122 1.72e-52

Nerve growth factor (NGF or beta-NGF); NGF is important for the development and maintenance of the sympathetic and sensory nervous systems.


Pssm-ID: 128445  Cd Length: 106  Bit Score: 160.73  E-value: 1.72e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6980909       9 SRRGELAVCDAVSGWVTDRRTAVDLRGREVEVLGEVPAAGGsPLRQYFFETRCKADNAEEGGPGAggggcrgVDRRHWVS 88
Cdd:smart00140   1 SHRGEYSVCDSISVWVTDKTTATDISGNEVTVLGEVPVNNG-PLKQYFYETRCKSPNPVKSGCRG-------IDSRHWNS 72
                           90       100       110
                   ....*....|....*....|....*....|....
gi 6980909      89 ECKAKQSYVRALTADAQGRVGWRWIRIDTACVCT 122
Cdd:smart00140  73 QCKTTQTYVRALTSDANKRVGWRFIRIDTACVCV 106
 
Name Accession Description Interval E-value
NGF pfam00243
Nerve growth factor family;
9-128 1.38e-56

Nerve growth factor family;


Pssm-ID: 425551  Cd Length: 112  Bit Score: 171.37  E-value: 1.38e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6980909      9 SRRGELAVCDAVSGWVTDRRTAVDLRGREVEVLGEVPAAGGsPLRQYFFETRCKADNAeeggpgAGGGGCRGVDRRHWVS 88
Cdd:pfam00243   1 SHRGEYSVCDSVSVWVTNKTTAVDIRGNEVTVLGEVKTNNG-VLKQYFFETKCRDGPP------GGGSGCRGIDKRHWNS 73
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 6980909     89 ECKAKQSYVRALTADaQGRVGWRWIRIDTACVCTLLSRTG 128
Cdd:pfam00243  74 YCKTKQSFVRALTID-KNKVGWRWIRIDTSCVCVLSRKSG 112
NGF smart00140
Nerve growth factor (NGF or beta-NGF); NGF is important for the development and maintenance of ...
9-122 1.72e-52

Nerve growth factor (NGF or beta-NGF); NGF is important for the development and maintenance of the sympathetic and sensory nervous systems.


Pssm-ID: 128445  Cd Length: 106  Bit Score: 160.73  E-value: 1.72e-52
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6980909       9 SRRGELAVCDAVSGWVTDRRTAVDLRGREVEVLGEVPAAGGsPLRQYFFETRCKADNAEEGGPGAggggcrgVDRRHWVS 88
Cdd:smart00140   1 SHRGEYSVCDSISVWVTDKTTATDISGNEVTVLGEVPVNNG-PLKQYFYETRCKSPNPVKSGCRG-------IDSRHWNS 72
                           90       100       110
                   ....*....|....*....|....*....|....
gi 6980909      89 ECKAKQSYVRALTADAQGRVGWRWIRIDTACVCT 122
Cdd:smart00140  73 QCKTTQTYVRALTSDANKRVGWRFIRIDTACVCV 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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