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Conserved domains on  [gi|71412271|ref|XP_808328|]
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ribosomal protein S29, putative [Trypanosoma cruzi]

Protein Classification

40S ribosomal protein S29( domain architecture ID 10015282)

40S ribosomal protein S29 is essential for rRNA processing and ribosome biogenesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00218 PTZ00218
40S ribosomal protein S29; Provisional
 1-57 2.26e-24

40S ribosomal protein S29; Provisional


:

Pssm-ID: 185518  Cd Length: 54  Bit Score: 85.12  E-value: 2.26e-24
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 71412271   1 MGHLEQWRSRQkigMGKGSRHCVICSNQKAVIRKYELNVCRQCFRENAANIGFSKLR 57
Cdd:PTZ00218  1 MGHLFNTHPRT---YGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
 
Name Accession Description Interval E-value
PTZ00218 PTZ00218
40S ribosomal protein S29; Provisional
 1-57 2.26e-24

40S ribosomal protein S29; Provisional


Pssm-ID: 185518  Cd Length: 54  Bit Score: 85.12  E-value: 2.26e-24
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 71412271   1 MGHLEQWRSRQkigMGKGSRHCVICSNQKAVIRKYELNVCRQCFRENAANIGFSKLR 57
Cdd:PTZ00218  1 MGHLFNTHPRT---YGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 15-55 2.26e-05

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 37.00  E-value: 2.26e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 71412271   15 MGKGSRHCVICSNQKAVIRKYELnvCRQCFRENAAN---IGFSK 55
Cdd:pfam00253 11 PTRIRNRCRLTGRPRGVIRKFGL--CRICFRELALKgeiPGVKK 52
 
Name Accession Description Interval E-value
PTZ00218 PTZ00218
40S ribosomal protein S29; Provisional
 1-57 2.26e-24

40S ribosomal protein S29; Provisional


Pssm-ID: 185518  Cd Length: 54  Bit Score: 85.12  E-value: 2.26e-24
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 71412271   1 MGHLEQWRSRQkigMGKGSRHCVICSNQKAVIRKYELNVCRQCFRENAANIGFSKLR 57
Cdd:PTZ00218  1 MGHLFNTHPRT---YGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
rps14P PRK05766
30S ribosomal protein S14P; Reviewed
 16-57 3.77e-11

30S ribosomal protein S14P; Reviewed


Pssm-ID: 235598  Cd Length: 52  Bit Score: 51.43  E-value: 3.77e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 71412271  16 GKGSRHCVICSNQKAVIRKYELNVCRQCFRENAANIGFSKLR 57
Cdd:PRK05766 11 GKGARECQRCGRKQGLIRKYGLYLCRQCFREVAPKLGFKKYS 52
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 15-55 2.26e-05

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 37.00  E-value: 2.26e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 71412271   15 MGKGSRHCVICSNQKAVIRKYELnvCRQCFRENAAN---IGFSK 55
Cdd:pfam00253 11 PTRIRNRCRLTGRPRGVIRKFGL--CRICFRELALKgeiPGVKK 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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