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Conserved domains on  [gi|730092|sp|P08964|]
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RecName: Full=Myosin-1; AltName: Full=Type II myosin

Protein Classification

MYSc_class_II and Smc domain-containing protein( domain architecture ID 12837882)

MYSc_class_II and Smc domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG5022 COG5022
Myosin heavy chain [General function prediction only];
2-1691 0e+00

Myosin heavy chain [General function prediction only];


:

Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 1400.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      2 TGGQSCSSNMIVWIPDEKEVFVKGELMSTDINKNKFTGQEEQIGIvhPLDSTEVSNLVQVRIsdvfpvNPSTFDKVENMS 81
Cdd:COG5022    1 MSTTNAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDG--ESVSVKKKVLGNDRI------KLPKFDGVDDLT 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     82 ELTHLNEPSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHnrlsksrldensHEKLPPHIFAIAE 161
Cdd:COG5022   73 ELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKN------------RLELEPHVFAIAE 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    162 EAYENLLSEGKDQSILVTGESGAGKTENTKKILQYLASITSGSpsniapvsgSSIVESFEMKILQSNPILESFGNAQTVR 241
Cdd:COG5022  141 EAYRNLLSEKENQTIIISGESGAGKTENAKRIMQYLASVTSSS---------TVEISSIEKQILATNPILEAFGNAKTVR 211
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    242 NNNSSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGlDDSELKNLRLkSRNVKDYKILSNS 321
Cdd:COG5022  212 NDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAG-DPEELKKLLL-LQNPKDYIYLSQG 289
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    322 NQDIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKND--VSAICSNLGVDEKDFQ 399
Cdd:COG5022  290 GCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDRNGAAIFSDNsvLDKACYLLGIDPSLFV 369
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    400 TAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQL 479
Cdd:COG5022  370 KWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQL 449
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    480 CINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKGPPtGVLPLLDEEAVLPKSTDESFYSKLI 559
Cdd:COG5022  450 CINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDY-FDNQPCIDLIEKKNPL-GILSLLDEECVMPHATDESFTSKLA 527
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    560 STWDQNSS-KFKRSRLK-NGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpegeksssagVEAN 637
Cdd:COG5022  528 QRLNKNSNpKFKKSRFRdNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFD----------DEEN 597
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    638 ISNQevkksartSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGY 717
Cdd:COG5022  598 IESK--------GRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGF 669
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    718 PNRIAFQEFFQRYRILYPENSTTTTFSSklKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFKAGVLADLEKQKDVKLNNI 797
Cdd:COG5022  670 PSRWTFDEFVQRYRILSPSKSWTGEYTW--KEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNI 747
                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    798 MIKLTATIRGYTVRKEITYHLQKLKKTRVIGNTFRLYnRLVKEDPWFNLFIRIKPLLTSSNDMTRTKKFNEQINKLKNdl 877
Cdd:COG5022  748 ATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLR-RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQK-- 824
                        890       900       910       920       930       940       950       960
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    878 qemeskkkflEEKNQKTVNElentqdllNQEKENLRKNESLLNRVkTSSETLQKQFDDLvsEKDEISrekLEVAQNLEEA 957
Cdd:COG5022  825 ----------TIKREKKLRE--------TEEVEFSLKAEVLIQKF-GRSLKAKKRFSLL--KKETIY---LQSAQRVELA 880
                        970       980       990      1000      1010      1020      1030      1040
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    958 HQKIQGLQETIREreatLEKLHSKNNELIKQISDLNCDISKeqssqSLIKESKLKLEnEIKRLKDVINSkeeeiksfndk 1037
Cdd:COG5022  881 ERQLQELKIDVKS----ISSLKLVNLELESEIIELKKSLSS-----DLIENLEFKTE-LIARLKKLLNN----------- 939
                       1050      1060      1070      1080      1090      1100      1110      1120
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1038 lSSSEEDLDIKLVTLEkncniamsRLQSLVTENSDLRSKNENFKkekaALNNQLKNKESELLKMKEKIDNHKKELATFSK 1117
Cdd:COG5022  940 -IDLEEGPSIEYVKLP--------ELNKLHEVESKLKETSEEYE----DLLKKSTILVREGNKANSELKNFKKELAELSK 1006
                       1130      1140      1150      1160      1170      1180      1190      1200
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1118 QRdDAVSEHgkiTAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEqkkrnslVESLNDSKIKELEARLsqeislnqy 1197
Cdd:COG5022 1007 QY-GALQES---TKQLKELPVEVAELQSASKIISSESTELSILKPLQK-------LKGLLLLENNQLQARY--------- 1066
                       1210      1220      1230      1240      1250      1260      1270      1280
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1198 lnkrisgnsvetnisstrrstsySDDPLDKEDiiKKYYDLQLAFTEITRNLENEIEEKKnlisrLRFTETRLASSSFEDQ 1277
Cdd:COG5022 1067 -----------------------KALKLRREN--SLLDDKQLYQLESTENLLKTINVKD-----LEVTNRNLVKPANVLQ 1116
                       1290      1300      1310      1320      1330      1340      1350      1360
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1278 KIKAQMKKLkKLIQDMDPSIPLDsilnepLDNCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISalhskfrkiqg 1357
Cdd:COG5022 1117 FIVAQMIKL-NLLQEISKFLSQL------VNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALS----------- 1178
                       1370      1380      1390      1400      1410      1420      1430      1440
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1358 ESSLSSSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPVGDiiKNRDSISkyeeEIRYYKLENYKLQEILNesngklS 1437
Cdd:COG5022 1179 EKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGD--KLKKLIS----EGWVPTEYSTSLKGFNN------L 1246
                       1450      1460      1470      1480      1490      1500      1510      1520
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1438 QLTLDLRQSKSKEALLSeQLDRLQKDLESTERQKELLSSTIKQQKQQfencMDDLQGNELRLREHIHALKQAEEDVKNma 1517
Cdd:COG5022 1247 NKKFDTPASMSNEKLLS-LLNSIDNLLSSYKLEEEVLPATINSLLQY----INVGLFNALRTKASSLRWKSATEVNYN-- 1319
                       1530      1540      1550      1560      1570      1580      1590      1600
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1518 siieklktqnkQKEKLIWEREMERNDSDMQLQetllELKRVQDVKKILSDDLAHLKERLSAVedRSQYTDEINRLKEELN 1597
Cdd:COG5022 1320 -----------SEELDDWCREFEISDVDEELE----ELIQAVKVLQLLKDDLNKLDELLDAC--YSLNPAEIQNLKSRYD 1382
                       1610      1620      1630      1640      1650      1660      1670      1680
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1598 CSLKaETNLKKEFatlKYKLETSTNDSEAKISDLLKQlDHYTKVVEMLNNEKDAISLaEKELYQKYEALNTECEslkgki 1677
Cdd:COG5022 1383 PADK-ENNLPKEI---LKKIEALLIKQELQLSLEGKD-ETEVHLSEIFSEEKSLISL-DRNSIYKEEVLSSLSA------ 1450
                       1690
                 ....*....|....
gi 730092   1678 vSLTKIKQELESDL 1691
Cdd:COG5022 1451 -LLTKEKIALLDRK 1463
Smc super family cl34174
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1534-1890 8.22e-11

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 67.43  E-value: 8.22e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1534 IWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEdrsqytdEINRLKEELNCslkaetnlkKEFATL 1613
Cdd:COG1196  167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE-------RYQELKAELRE---------LELALL 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1614 KYKLEtstnDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQ 1693
Cdd:COG1196  231 LAKLK----ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISL 306
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1694 KTDALQISNAALSSSTQKNKEITEKI----KYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLYEENQ 1769
Cdd:COG1196  307 LRERLEELENELEELEERLEELKEKIealkEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1770 TLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSLETDLKYEEmkknksLERAVEELQTKNSQQTDVIELANK 1849
Cdd:COG1196  387 ELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE------LQTELEELNEELEELEEQLEELRD 460
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 730092   1850 NRSEFEEATLKYEAQISDLEKYISQQELEMKKSIRDNSSYR 1890
Cdd:COG1196  461 RLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ 501
 
Name Accession Description Interval E-value
COG5022 COG5022
Myosin heavy chain [General function prediction only];
2-1691 0e+00

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 1400.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      2 TGGQSCSSNMIVWIPDEKEVFVKGELMSTDINKNKFTGQEEQIGIvhPLDSTEVSNLVQVRIsdvfpvNPSTFDKVENMS 81
Cdd:COG5022    1 MSTTNAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDG--ESVSVKKKVLGNDRI------KLPKFDGVDDLT 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     82 ELTHLNEPSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHnrlsksrldensHEKLPPHIFAIAE 161
Cdd:COG5022   73 ELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKN------------RLELEPHVFAIAE 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    162 EAYENLLSEGKDQSILVTGESGAGKTENTKKILQYLASITSGSpsniapvsgSSIVESFEMKILQSNPILESFGNAQTVR 241
Cdd:COG5022  141 EAYRNLLSEKENQTIIISGESGAGKTENAKRIMQYLASVTSSS---------TVEISSIEKQILATNPILEAFGNAKTVR 211
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    242 NNNSSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGlDDSELKNLRLkSRNVKDYKILSNS 321
Cdd:COG5022  212 NDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAG-DPEELKKLLL-LQNPKDYIYLSQG 289
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    322 NQDIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKND--VSAICSNLGVDEKDFQ 399
Cdd:COG5022  290 GCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDRNGAAIFSDNsvLDKACYLLGIDPSLFV 369
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    400 TAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQL 479
Cdd:COG5022  370 KWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQL 449
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    480 CINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKGPPtGVLPLLDEEAVLPKSTDESFYSKLI 559
Cdd:COG5022  450 CINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDY-FDNQPCIDLIEKKNPL-GILSLLDEECVMPHATDESFTSKLA 527
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    560 STWDQNSS-KFKRSRLK-NGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpegeksssagVEAN 637
Cdd:COG5022  528 QRLNKNSNpKFKKSRFRdNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFD----------DEEN 597
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    638 ISNQevkksartSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGY 717
Cdd:COG5022  598 IESK--------GRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGF 669
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    718 PNRIAFQEFFQRYRILYPENSTTTTFSSklKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFKAGVLADLEKQKDVKLNNI 797
Cdd:COG5022  670 PSRWTFDEFVQRYRILSPSKSWTGEYTW--KEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNI 747
                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    798 MIKLTATIRGYTVRKEITYHLQKLKKTRVIGNTFRLYnRLVKEDPWFNLFIRIKPLLTSSNDMTRTKKFNEQINKLKNdl 877
Cdd:COG5022  748 ATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLR-RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQK-- 824
                        890       900       910       920       930       940       950       960
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    878 qemeskkkflEEKNQKTVNElentqdllNQEKENLRKNESLLNRVkTSSETLQKQFDDLvsEKDEISrekLEVAQNLEEA 957
Cdd:COG5022  825 ----------TIKREKKLRE--------TEEVEFSLKAEVLIQKF-GRSLKAKKRFSLL--KKETIY---LQSAQRVELA 880
                        970       980       990      1000      1010      1020      1030      1040
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    958 HQKIQGLQETIREreatLEKLHSKNNELIKQISDLNCDISKeqssqSLIKESKLKLEnEIKRLKDVINSkeeeiksfndk 1037
Cdd:COG5022  881 ERQLQELKIDVKS----ISSLKLVNLELESEIIELKKSLSS-----DLIENLEFKTE-LIARLKKLLNN----------- 939
                       1050      1060      1070      1080      1090      1100      1110      1120
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1038 lSSSEEDLDIKLVTLEkncniamsRLQSLVTENSDLRSKNENFKkekaALNNQLKNKESELLKMKEKIDNHKKELATFSK 1117
Cdd:COG5022  940 -IDLEEGPSIEYVKLP--------ELNKLHEVESKLKETSEEYE----DLLKKSTILVREGNKANSELKNFKKELAELSK 1006
                       1130      1140      1150      1160      1170      1180      1190      1200
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1118 QRdDAVSEHgkiTAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEqkkrnslVESLNDSKIKELEARLsqeislnqy 1197
Cdd:COG5022 1007 QY-GALQES---TKQLKELPVEVAELQSASKIISSESTELSILKPLQK-------LKGLLLLENNQLQARY--------- 1066
                       1210      1220      1230      1240      1250      1260      1270      1280
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1198 lnkrisgnsvetnisstrrstsySDDPLDKEDiiKKYYDLQLAFTEITRNLENEIEEKKnlisrLRFTETRLASSSFEDQ 1277
Cdd:COG5022 1067 -----------------------KALKLRREN--SLLDDKQLYQLESTENLLKTINVKD-----LEVTNRNLVKPANVLQ 1116
                       1290      1300      1310      1320      1330      1340      1350      1360
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1278 KIKAQMKKLkKLIQDMDPSIPLDsilnepLDNCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISalhskfrkiqg 1357
Cdd:COG5022 1117 FIVAQMIKL-NLLQEISKFLSQL------VNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALS----------- 1178
                       1370      1380      1390      1400      1410      1420      1430      1440
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1358 ESSLSSSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPVGDiiKNRDSISkyeeEIRYYKLENYKLQEILNesngklS 1437
Cdd:COG5022 1179 EKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGD--KLKKLIS----EGWVPTEYSTSLKGFNN------L 1246
                       1450      1460      1470      1480      1490      1500      1510      1520
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1438 QLTLDLRQSKSKEALLSeQLDRLQKDLESTERQKELLSSTIKQQKQQfencMDDLQGNELRLREHIHALKQAEEDVKNma 1517
Cdd:COG5022 1247 NKKFDTPASMSNEKLLS-LLNSIDNLLSSYKLEEEVLPATINSLLQY----INVGLFNALRTKASSLRWKSATEVNYN-- 1319
                       1530      1540      1550      1560      1570      1580      1590      1600
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1518 siieklktqnkQKEKLIWEREMERNDSDMQLQetllELKRVQDVKKILSDDLAHLKERLSAVedRSQYTDEINRLKEELN 1597
Cdd:COG5022 1320 -----------SEELDDWCREFEISDVDEELE----ELIQAVKVLQLLKDDLNKLDELLDAC--YSLNPAEIQNLKSRYD 1382
                       1610      1620      1630      1640      1650      1660      1670      1680
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1598 CSLKaETNLKKEFatlKYKLETSTNDSEAKISDLLKQlDHYTKVVEMLNNEKDAISLaEKELYQKYEALNTECEslkgki 1677
Cdd:COG5022 1383 PADK-ENNLPKEI---LKKIEALLIKQELQLSLEGKD-ETEVHLSEIFSEEKSLISL-DRNSIYKEEVLSSLSA------ 1450
                       1690
                 ....*....|....
gi 730092   1678 vSLTKIKQELESDL 1691
Cdd:COG5022 1451 -LLTKEKIALLDRK 1463
MYSc_class_II cd01377
class II myosins, motor domain; Myosin motor domain in class II myosins. Class II myosins, ...
89-779 0e+00

class II myosins, motor domain; Myosin motor domain in class II myosins. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. Thus, myosin II has two heads. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276951 [Multi-domain]  Cd Length: 662  Bit Score: 1069.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHNrlsksrldenshEKLPPHIFAIAEEAYENLL 168
Cdd:cd01377    1 ASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVIDKYKGKRR------------EEMPPHIFAIADNAYRNML 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSiveSFEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd01377   69 QDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKESGKKKG---TLEDQILQANPILEAFGNAKTVRNNNSSRF 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLkSRNVKDYKILSNSNQDIiPG 328
Cdd:cd01377  146 GKFIRIHFGSTGKIAGADIETYLLEKSRVVRQAKGERNYHIFYQLLSGADPELKEKLLL-TGDPSYYFFLSQGELTI-DG 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAE-QASFKNDVSA--ICSNLGVDEKDFQTAILRP 405
Cdd:cd01377  224 VDDAEEFKLTDEAFDILGFSEEEKMSIFKIVAAILHLGNIKFKQRRREeQAELDGTEEAdkAAHLLGVNSSDLLKALLKP 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    406 RSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINYTN 485
Cdd:cd01377  304 RIKVGREWVTKGQNKEQVVFSVGALAKALYERLFLWLVKRINKTLDTKSKRQYFIGVLDIAGFEIFEFNSFEQLCINYTN 383
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    486 EKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgPPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQN 565
Cdd:cd01377  384 EKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGLDLQPTIDLIEK--PNMGILSILDEECVFPKATDKTFVEKLYSNHLGK 461
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    566 SS---KFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPEGEKSSSAGveanisnqe 642
Cdd:cd01377  462 SKnfkKPKPKKSEAHFILKHYAGDVEYNIDGWLEKNKDPLNENVVALLKKSSDPLVASLFKDYEESGGGGG--------- 532
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    643 vKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIA 722
Cdd:cd01377  533 -KKKKKGGSFRTVSQLHKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKIDAPLVLHQLRCNGVLEGIRICRKGFPNRII 611
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 730092    723 FQEFFQRYRILYPENSTTTTFSSklkastKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd01377  612 FAEFKQRYSILAPNAIPKGFDDG------KAACEKILKALQLDPELYRIGNTKVFFK 662
Myosin_head pfam00063
Myosin head (motor domain);
77-779 0e+00

Myosin head (motor domain);


Pssm-ID: 395017  Cd Length: 674  Bit Score: 995.25  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       77 VENMSELTHLNEPSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHnrlsksrldensHEKLPPHI 156
Cdd:pfam00063    1 VEDMVELSYLNEPSVLHNLKKRYKSDLIYTYSGLVLVAVNPYKQLPIYSEDMIKAYRGKR------------RGELPPHI 68
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      157 FAIAEEAYENLLSEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIapvsgssiVESFEMKILQSNPILESFGN 236
Cdd:pfam00063   69 FAIADEAYRSMLQDKENQSILISGESGAGKTENTKKIMQYLASVSGSGSAGN--------VGRLEEQILQSNPILEAFGN 140
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      237 AQTVRNNNSSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKsrNVKDYK 316
Cdd:pfam00063  141 AKTVRNNNSSRFGKYIEIQFDAKGDIVGGKIETYLLEKSRVVYQAEGERNYHIFYQLLAGASAQLKKELRLT--NPKDYH 218
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      317 ILSNSNQDIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRA-EQASFKND--VSAICSNLGV 393
Cdd:pfam00063  219 YLSQSGCYTIDGIDDSEEFKITDKAMDILGFSDEEQMGIFRIVAAILHLGNIEFKKERNdEQAVPDDTenLQKAASLLGI 298
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      394 DEKDFQTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHG-SATLNYIGLLDIAGFEIFE 472
Cdd:pfam00063  299 DSTELEKALCKRRIKTGRETVSKPQNVEQANYARDALAKAIYSRLFDWLVDRINKSLDVKtIEKASFIGVLDIYGFEIFE 378
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      473 NNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGkDLQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDE 552
Cdd:pfam00063  379 KNSFEQLCINYVNEKLQQFFNHHMFKLEQEEYVREGIEWTFIDFG-DNQPCIDLIEKK--PLGILSLLDEECLFPKATDQ 455
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      553 SFYSKLISTWDqNSSKFKRSRL--KNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPEGEKSS 630
Cdd:pfam00063  456 TFLDKLYSTFS-KHPHFQKPRLqgETHFIIKHYAGDVEYNVEGFLEKNKDPLNDDLVSLLKSSSDPLLAELFPDYETAES 534
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      631 SAgveANISNQEVKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGI 710
Cdd:pfam00063  535 AA---ANESGKSTPKRTKKKRFITVGSQFKESLGELMKTLNSTNPHYIRCIKPNEKKRAGVFDNSLVLHQLRCNGVLEGI 611
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 730092      711 RLAREGYPNRIAFQEFFQRYRILYPENsttttfSSKLKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:pfam00063  612 RIRRAGFPNRITFQEFVQRYRILAPKT------WPKWKGDAKKGCEAILQSLNLDKEEYQFGKTKIFFR 674
MYSc smart00242
Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical ...
70-791 0e+00

Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.


Pssm-ID: 214580 [Multi-domain]  Cd Length: 677  Bit Score: 928.88  E-value: 0e+00
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092        70 NPSTFDKVENMSELTHLNEPSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHnrlsksrldensH 149
Cdd:smart00242    1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKS------------R 68
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       150 EKLPPHIFAIAEEAYENLLSEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSniapvsgssiVESFEMKILQSNP 229
Cdd:smart00242   69 GELPPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLASVSGSNTE----------VGSVEDQILESNP 138
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       230 ILESFGNAQTVRNNNSSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKS 309
Cdd:smart00242  139 ILEAFGNAKTLRNNNSSRFGKFIEIHFDAKGKIIGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKS 218
                           250       260       270       280       290       300       310       320
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       310 rnVKDYKILSNSNQDIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQAS----FKNDVS 385
Cdd:smart00242  219 --PEDYRYLNQGGCLTVDGIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAAstvkDKEELS 296
                           330       340       350       360       370       380       390       400
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       386 AICSNLGVDEKDFQTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDI 465
Cdd:smart00242  297 NAAELLGVDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINQSLSFKDGSTYFIGVLDI 376
                           410       420       430       440       450       460       470       480
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       466 AGFEIFENNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGkDLQLTIDLIESKgpPTGVLPLLDEEAV 545
Cdd:smart00242  377 YGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFF-DNQDCIDLIEKK--PPGILSLLDEECR 453
                           490       500       510       520       530       540       550       560
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       546 LPKSTDESFYSKLISTWDQNSSKFKRSRL-KNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQP 624
Cdd:smart00242  454 FPKGTDQTFLEKLNQHHKKHPHFSKPKKKgRTEFIIKHYAGDVTYDVTGFLEKNKDTLSDDLIELLQSSKNPLIASLFPS 533
                           570       580       590       600       610       620       630       640
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       625 EGEKSSSagveanisnqevkksarTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCN 704
Cdd:smart00242  534 GVSNAGS-----------------KKRFQTVGSQFKEQLNELMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYL 596
                           650       660       670       680       690       700       710       720
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       705 GVLEGIRLAREGYPNRIAFQEFFQRYRILYPEnsttttFSSKLKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFKAGVLA 784
Cdd:smart00242  597 GVLENIRIRRAGFPYRLPFDEFLQRYRVLLPD------TWPPWGGDAKKACEALLQSLGLDEDEYQLGKTKVFLRPGQLA 670

                    ....*..
gi 730092       785 DLEKQKD 791
Cdd:smart00242  671 ELEELRE 677
PTZ00014 PTZ00014
myosin-A; Provisional
46-821 1.09e-137

myosin-A; Provisional


Pssm-ID: 240229 [Multi-domain]  Cd Length: 821  Bit Score: 450.25  E-value: 1.09e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      46 IVHPLDSTEVSNLVQ----------VRISDVF----PVNPSTFDKVeNMseLTHLNEPSVLYNLEKRYDCDLIYTYSGLF 111
Cdd:PTZ00014   56 LVLPGSTGEKLTLKQidpptnstfeVKPEHAFnansQIDPMTYGDI-GL--LPHTNIPCVLDFLKHRYLKNQIYTTADPL 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     112 LVAINPYHNLNLYSEDHINLYHnkhnrlsksrlDENSHEKLPPHIFAIAEEAYENLLSEGKDQSILVTGESGAGKTENTK 191
Cdd:PTZ00014  133 LVAINPFKDLGNTTNDWIRRYR-----------DAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGESGAGKTEATK 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     192 KILQYLASITSGSPSniapvsgssivESFEMKILQSNPILESFGNAQTVRNNNSSRFGKFIKIEFNEHGMINGAHIEWYL 271
Cdd:PTZ00014  202 QIMRYFASSKSGNMD-----------LKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFL 270
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     272 LEKSRIVHQNSKERNYHIFYQLLSGLDDsELKNlRLKSRNVKDYKILSNSNQDiIPGINDVENFKELLSALNIIGFSKDQ 351
Cdd:PTZ00014  271 LEKSRVVTQEDDERSYHIFYQLLKGAND-EMKE-KYKLKSLEEYKYINPKCLD-VPGIDDVKDFEEVMESFDSMGLSESQ 347
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     352 IRWIFQVVAIILLIGNIEFVSdraEQASFKNDVSAI-----------CSNLGVDEKDFQTAILRPRSKAGKEWVSQSKNS 420
Cdd:PTZ00014  348 IEDIFSILSGVLLLGNVEIEG---KEEGGLTDAAAIsdeslevfneaCELLFLDYESLKKELTVKVTYAGNQKIEGPWSK 424
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     421 QQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINYTNEKLQQFFNNHMFVLE 500
Cdd:PTZ00014  425 DESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERE 504
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     501 QSEYLKENIQWDYIDYgKDLQLTIDLIESKGppTGVLPLLDEEAVLPKSTDESFYSKLISTWdQNSSKFKRSRL-KNG-F 578
Cdd:PTZ00014  505 SKLYKDEGISTEELEY-TSNESVIDLLCGKG--KSVLSILEDQCLAPGGTDEKFVSSCNTNL-KNNPKYKPAKVdSNKnF 580
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     579 ILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpegeksssaGVEAnisnqEVKKSARTSTFkttSSR 658
Cdd:PTZ00014  581 VIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFE---------GVEV-----EKGKLAKGQLI---GSQ 643
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     659 HREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQEFFQRYRILypenS 738
Cdd:PTZ00014  644 FLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYL----D 719
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     739 TTTTFSSKLKASTKqnCEFLLTSLQLDTKVYKIGNTKLFFK---AGVLADLEKQKDVKLNNIMIKLTATIRGYTVRKEIT 815
Cdd:PTZ00014  720 LAVSNDSSLDPKEK--AEKLLERSGLPKDSYAIGKTMVFLKkdaAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVR 797

                  ....*.
gi 730092     816 YHLQKL 821
Cdd:PTZ00014  798 KNIKSL 803
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
930-1785 1.16e-24

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 112.84  E-value: 1.16e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      930 QKQFDDLVSEKDE-----------ISR---EKLEVAQNLEEAHQKIQGLQETIREREATLEKLH---SKNNELIKQISDL 992
Cdd:TIGR02168  143 QGKISEIIEAKPEerraifeeaagISKykeRRKETERKLERTRENLDRLEDILNELERQLKSLErqaEKAERYKELKAEL 222
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      993 ncdiskEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDI---KLVTLEKNCNIAMSRLQSLVTE 1069
Cdd:TIGR02168  223 ------RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEElrlEVSELEEEIEELQKELYALANE 296
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1070 NSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQK 1149
Cdd:TIGR02168  297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1150 IKEEYSNFQR---ETKEQEQKKRNSLVEslNDSKIKELEARLSQEISLNQYLNKRISGNSVETNISSTRRSTSYSDDPL- 1225
Cdd:TIGR02168  377 LEEQLETLRSkvaQLELQIASLNNEIER--LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQe 454
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1226 DKEDIIKKYYDLQLAFTEITRNLENEIEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDP---------- 1295
Cdd:TIGR02168  455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlselisvdeg 534
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1296 -----SIPLDSILNEPLDNcpdkesDINKLMLEVDYLK-----RQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSD 1365
Cdd:TIGR02168  535 yeaaiEAALGGRLQAVVVE------NLNAAKKAIAFLKqnelgRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLV 608
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1366 IYKLKFEAS----------EERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRyyklenyklQEILNESNgK 1435
Cdd:TIGR02168  609 KFDPKLRKAlsyllggvlvVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTN---------SSILERRR-E 678
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1436 LSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENcmddlqgnelrlrehihalkqAEEDVKN 1515
Cdd:TIGR02168  679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA---------------------LRKDLAR 737
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1516 MASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRsqytdeINRLKEE 1595
Cdd:TIGR02168  738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA------LDELRAE 811
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1596 LncslkaeTNLKKEFATLKYKLETSTNDSEAKisdllkqldhyTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKG 1675
Cdd:TIGR02168  812 L-------TLLNEEAANLRERLESLERRIAAT-----------ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1676 KIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETL-QLQMEQNSRNGELVKTLQASCNGYKDKF 1754
Cdd:TIGR02168  874 ELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLaQLELRLEGLEVRIDNLQERLSEEYSLTL 953
                          890       900       910
                   ....*....|....*....|....*....|.
gi 730092     1755 DDEKQKNIDLYEENQTLQKLNTDLQLQLKNL 1785
Cdd:TIGR02168  954 EEAEALENKIEDDEEEARRRLKRLENKIKEL 984
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1534-1890 8.22e-11

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 67.43  E-value: 8.22e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1534 IWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEdrsqytdEINRLKEELNCslkaetnlkKEFATL 1613
Cdd:COG1196  167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE-------RYQELKAELRE---------LELALL 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1614 KYKLEtstnDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQ 1693
Cdd:COG1196  231 LAKLK----ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISL 306
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1694 KTDALQISNAALSSSTQKNKEITEKI----KYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLYEENQ 1769
Cdd:COG1196  307 LRERLEELENELEELEERLEELKEKIealkEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1770 TLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSLETDLKYEEmkknksLERAVEELQTKNSQQTDVIELANK 1849
Cdd:COG1196  387 ELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE------LQTELEELNEELEELEEQLEELRD 460
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 730092   1850 NRSEFEEATLKYEAQISDLEKYISQQELEMKKSIRDNSSYR 1890
Cdd:COG1196  461 RLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ 501
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1574-1884 1.17e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 47.37  E-value: 1.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1574 ERLSAVEDrsQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAIS 1653
Cdd:TIGR02169  187 ERLDLIID--EKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELE 264
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1654 LAEKELYQKYEALNTECESL-KGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKI-KYLEETLQLQME 1731
Cdd:TIGR02169  265 KRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIdKLLAEIEELERE 344
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1732 QNSRNGELVKtlqascngYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSL 1811
Cdd:TIGR02169  345 IEEERKRRDK--------LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQ 416
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 730092     1812 ETDLKYEEMK-KNKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYISQQELEMKKSIR 1884
Cdd:TIGR02169  417 RLSEELADLNaAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
PRK10361 PRK10361
DNA recombination protein RmuC; Provisional
1631-1814 2.87e-04

DNA recombination protein RmuC; Provisional


Pssm-ID: 182409 [Multi-domain]  Cd Length: 475  Bit Score: 45.75  E-value: 2.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1631 LLKQLDHYTKVVEMLNNEKD---AISLAEKELYQKyEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNA---- 1703
Cdd:PRK10361   21 LFASYQHAQQKAEQLAEREEmvaELSAAKQQITQS-EHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQhadd 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1704 ---ALSSSTQKNKEITEKI--KYLEETLQLQMEQN--SRNGeLVKTLQASCNGYK----DKFDDEKQKNIDLYEENQTLQ 1772
Cdd:PRK10361  100 kirQMINSEQRLSEQFENLanRIFEHSNRRVDEQNrqSLNS-LLSPLREQLDGFRrqvqDSFGKEAQERHTLAHEIRNLQ 178
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 730092    1773 KLNTDLQLQLKNLHERLS-DTTEKNAW-------------LSKIHELENMVSLETD 1814
Cdd:PRK10361  179 QLNAQMAQEAINLTRALKgDNKTQGNWgevvltrvleasgLREGYEYETQVSIEND 234
 
Name Accession Description Interval E-value
COG5022 COG5022
Myosin heavy chain [General function prediction only];
2-1691 0e+00

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 1400.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      2 TGGQSCSSNMIVWIPDEKEVFVKGELMSTDINKNKFTGQEEQIGIvhPLDSTEVSNLVQVRIsdvfpvNPSTFDKVENMS 81
Cdd:COG5022    1 MSTTNAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDG--ESVSVKKKVLGNDRI------KLPKFDGVDDLT 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     82 ELTHLNEPSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHnrlsksrldensHEKLPPHIFAIAE 161
Cdd:COG5022   73 ELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKN------------RLELEPHVFAIAE 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    162 EAYENLLSEGKDQSILVTGESGAGKTENTKKILQYLASITSGSpsniapvsgSSIVESFEMKILQSNPILESFGNAQTVR 241
Cdd:COG5022  141 EAYRNLLSEKENQTIIISGESGAGKTENAKRIMQYLASVTSSS---------TVEISSIEKQILATNPILEAFGNAKTVR 211
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    242 NNNSSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGlDDSELKNLRLkSRNVKDYKILSNS 321
Cdd:COG5022  212 NDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAG-DPEELKKLLL-LQNPKDYIYLSQG 289
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    322 NQDIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKND--VSAICSNLGVDEKDFQ 399
Cdd:COG5022  290 GCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDRNGAAIFSDNsvLDKACYLLGIDPSLFV 369
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    400 TAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQL 479
Cdd:COG5022  370 KWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQL 449
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    480 CINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKGPPtGVLPLLDEEAVLPKSTDESFYSKLI 559
Cdd:COG5022  450 CINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDY-FDNQPCIDLIEKKNPL-GILSLLDEECVMPHATDESFTSKLA 527
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    560 STWDQNSS-KFKRSRLK-NGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpegeksssagVEAN 637
Cdd:COG5022  528 QRLNKNSNpKFKKSRFRdNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFD----------DEEN 597
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    638 ISNQevkksartSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGY 717
Cdd:COG5022  598 IESK--------GRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGF 669
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    718 PNRIAFQEFFQRYRILYPENSTTTTFSSklKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFKAGVLADLEKQKDVKLNNI 797
Cdd:COG5022  670 PSRWTFDEFVQRYRILSPSKSWTGEYTW--KEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNI 747
                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    798 MIKLTATIRGYTVRKEITYHLQKLKKTRVIGNTFRLYnRLVKEDPWFNLFIRIKPLLTSSNDMTRTKKFNEQINKLKNdl 877
Cdd:COG5022  748 ATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLR-RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQK-- 824
                        890       900       910       920       930       940       950       960
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    878 qemeskkkflEEKNQKTVNElentqdllNQEKENLRKNESLLNRVkTSSETLQKQFDDLvsEKDEISrekLEVAQNLEEA 957
Cdd:COG5022  825 ----------TIKREKKLRE--------TEEVEFSLKAEVLIQKF-GRSLKAKKRFSLL--KKETIY---LQSAQRVELA 880
                        970       980       990      1000      1010      1020      1030      1040
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    958 HQKIQGLQETIREreatLEKLHSKNNELIKQISDLNCDISKeqssqSLIKESKLKLEnEIKRLKDVINSkeeeiksfndk 1037
Cdd:COG5022  881 ERQLQELKIDVKS----ISSLKLVNLELESEIIELKKSLSS-----DLIENLEFKTE-LIARLKKLLNN----------- 939
                       1050      1060      1070      1080      1090      1100      1110      1120
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1038 lSSSEEDLDIKLVTLEkncniamsRLQSLVTENSDLRSKNENFKkekaALNNQLKNKESELLKMKEKIDNHKKELATFSK 1117
Cdd:COG5022  940 -IDLEEGPSIEYVKLP--------ELNKLHEVESKLKETSEEYE----DLLKKSTILVREGNKANSELKNFKKELAELSK 1006
                       1130      1140      1150      1160      1170      1180      1190      1200
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1118 QRdDAVSEHgkiTAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEqkkrnslVESLNDSKIKELEARLsqeislnqy 1197
Cdd:COG5022 1007 QY-GALQES---TKQLKELPVEVAELQSASKIISSESTELSILKPLQK-------LKGLLLLENNQLQARY--------- 1066
                       1210      1220      1230      1240      1250      1260      1270      1280
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1198 lnkrisgnsvetnisstrrstsySDDPLDKEDiiKKYYDLQLAFTEITRNLENEIEEKKnlisrLRFTETRLASSSFEDQ 1277
Cdd:COG5022 1067 -----------------------KALKLRREN--SLLDDKQLYQLESTENLLKTINVKD-----LEVTNRNLVKPANVLQ 1116
                       1290      1300      1310      1320      1330      1340      1350      1360
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1278 KIKAQMKKLkKLIQDMDPSIPLDsilnepLDNCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISalhskfrkiqg 1357
Cdd:COG5022 1117 FIVAQMIKL-NLLQEISKFLSQL------VNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALS----------- 1178
                       1370      1380      1390      1400      1410      1420      1430      1440
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1358 ESSLSSSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPVGDiiKNRDSISkyeeEIRYYKLENYKLQEILNesngklS 1437
Cdd:COG5022 1179 EKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGD--KLKKLIS----EGWVPTEYSTSLKGFNN------L 1246
                       1450      1460      1470      1480      1490      1500      1510      1520
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1438 QLTLDLRQSKSKEALLSeQLDRLQKDLESTERQKELLSSTIKQQKQQfencMDDLQGNELRLREHIHALKQAEEDVKNma 1517
Cdd:COG5022 1247 NKKFDTPASMSNEKLLS-LLNSIDNLLSSYKLEEEVLPATINSLLQY----INVGLFNALRTKASSLRWKSATEVNYN-- 1319
                       1530      1540      1550      1560      1570      1580      1590      1600
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1518 siieklktqnkQKEKLIWEREMERNDSDMQLQetllELKRVQDVKKILSDDLAHLKERLSAVedRSQYTDEINRLKEELN 1597
Cdd:COG5022 1320 -----------SEELDDWCREFEISDVDEELE----ELIQAVKVLQLLKDDLNKLDELLDAC--YSLNPAEIQNLKSRYD 1382
                       1610      1620      1630      1640      1650      1660      1670      1680
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1598 CSLKaETNLKKEFatlKYKLETSTNDSEAKISDLLKQlDHYTKVVEMLNNEKDAISLaEKELYQKYEALNTECEslkgki 1677
Cdd:COG5022 1383 PADK-ENNLPKEI---LKKIEALLIKQELQLSLEGKD-ETEVHLSEIFSEEKSLISL-DRNSIYKEEVLSSLSA------ 1450
                       1690
                 ....*....|....
gi 730092   1678 vSLTKIKQELESDL 1691
Cdd:COG5022 1451 -LLTKEKIALLDRK 1463
MYSc_class_II cd01377
class II myosins, motor domain; Myosin motor domain in class II myosins. Class II myosins, ...
89-779 0e+00

class II myosins, motor domain; Myosin motor domain in class II myosins. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. Thus, myosin II has two heads. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276951 [Multi-domain]  Cd Length: 662  Bit Score: 1069.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHNrlsksrldenshEKLPPHIFAIAEEAYENLL 168
Cdd:cd01377    1 ASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVIDKYKGKRR------------EEMPPHIFAIADNAYRNML 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSiveSFEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd01377   69 QDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKESGKKKG---TLEDQILQANPILEAFGNAKTVRNNNSSRF 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLkSRNVKDYKILSNSNQDIiPG 328
Cdd:cd01377  146 GKFIRIHFGSTGKIAGADIETYLLEKSRVVRQAKGERNYHIFYQLLSGADPELKEKLLL-TGDPSYYFFLSQGELTI-DG 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAE-QASFKNDVSA--ICSNLGVDEKDFQTAILRP 405
Cdd:cd01377  224 VDDAEEFKLTDEAFDILGFSEEEKMSIFKIVAAILHLGNIKFKQRRREeQAELDGTEEAdkAAHLLGVNSSDLLKALLKP 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    406 RSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINYTN 485
Cdd:cd01377  304 RIKVGREWVTKGQNKEQVVFSVGALAKALYERLFLWLVKRINKTLDTKSKRQYFIGVLDIAGFEIFEFNSFEQLCINYTN 383
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    486 EKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgPPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQN 565
Cdd:cd01377  384 EKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGLDLQPTIDLIEK--PNMGILSILDEECVFPKATDKTFVEKLYSNHLGK 461
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    566 SS---KFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPEGEKSSSAGveanisnqe 642
Cdd:cd01377  462 SKnfkKPKPKKSEAHFILKHYAGDVEYNIDGWLEKNKDPLNENVVALLKKSSDPLVASLFKDYEESGGGGG--------- 532
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    643 vKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIA 722
Cdd:cd01377  533 -KKKKKGGSFRTVSQLHKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKIDAPLVLHQLRCNGVLEGIRICRKGFPNRII 611
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 730092    723 FQEFFQRYRILYPENSTTTTFSSklkastKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd01377  612 FAEFKQRYSILAPNAIPKGFDDG------KAACEKILKALQLDPELYRIGNTKVFFK 662
Myosin_head pfam00063
Myosin head (motor domain);
77-779 0e+00

Myosin head (motor domain);


Pssm-ID: 395017  Cd Length: 674  Bit Score: 995.25  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       77 VENMSELTHLNEPSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHnrlsksrldensHEKLPPHI 156
Cdd:pfam00063    1 VEDMVELSYLNEPSVLHNLKKRYKSDLIYTYSGLVLVAVNPYKQLPIYSEDMIKAYRGKR------------RGELPPHI 68
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      157 FAIAEEAYENLLSEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIapvsgssiVESFEMKILQSNPILESFGN 236
Cdd:pfam00063   69 FAIADEAYRSMLQDKENQSILISGESGAGKTENTKKIMQYLASVSGSGSAGN--------VGRLEEQILQSNPILEAFGN 140
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      237 AQTVRNNNSSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKsrNVKDYK 316
Cdd:pfam00063  141 AKTVRNNNSSRFGKYIEIQFDAKGDIVGGKIETYLLEKSRVVYQAEGERNYHIFYQLLAGASAQLKKELRLT--NPKDYH 218
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      317 ILSNSNQDIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRA-EQASFKND--VSAICSNLGV 393
Cdd:pfam00063  219 YLSQSGCYTIDGIDDSEEFKITDKAMDILGFSDEEQMGIFRIVAAILHLGNIEFKKERNdEQAVPDDTenLQKAASLLGI 298
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      394 DEKDFQTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHG-SATLNYIGLLDIAGFEIFE 472
Cdd:pfam00063  299 DSTELEKALCKRRIKTGRETVSKPQNVEQANYARDALAKAIYSRLFDWLVDRINKSLDVKtIEKASFIGVLDIYGFEIFE 378
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      473 NNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGkDLQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDE 552
Cdd:pfam00063  379 KNSFEQLCINYVNEKLQQFFNHHMFKLEQEEYVREGIEWTFIDFG-DNQPCIDLIEKK--PLGILSLLDEECLFPKATDQ 455
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      553 SFYSKLISTWDqNSSKFKRSRL--KNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPEGEKSS 630
Cdd:pfam00063  456 TFLDKLYSTFS-KHPHFQKPRLqgETHFIIKHYAGDVEYNVEGFLEKNKDPLNDDLVSLLKSSSDPLLAELFPDYETAES 534
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      631 SAgveANISNQEVKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGI 710
Cdd:pfam00063  535 AA---ANESGKSTPKRTKKKRFITVGSQFKESLGELMKTLNSTNPHYIRCIKPNEKKRAGVFDNSLVLHQLRCNGVLEGI 611
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 730092      711 RLAREGYPNRIAFQEFFQRYRILYPENsttttfSSKLKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:pfam00063  612 RIRRAGFPNRITFQEFVQRYRILAPKT------WPKWKGDAKKGCEAILQSLNLDKEEYQFGKTKIFFR 674
MYSc smart00242
Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical ...
70-791 0e+00

Myosin. Large ATPases; ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.


Pssm-ID: 214580 [Multi-domain]  Cd Length: 677  Bit Score: 928.88  E-value: 0e+00
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092        70 NPSTFDKVENMSELTHLNEPSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHnrlsksrldensH 149
Cdd:smart00242    1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKS------------R 68
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       150 EKLPPHIFAIAEEAYENLLSEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSniapvsgssiVESFEMKILQSNP 229
Cdd:smart00242   69 GELPPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLASVSGSNTE----------VGSVEDQILESNP 138
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       230 ILESFGNAQTVRNNNSSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKS 309
Cdd:smart00242  139 ILEAFGNAKTLRNNNSSRFGKFIEIHFDAKGKIIGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKS 218
                           250       260       270       280       290       300       310       320
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       310 rnVKDYKILSNSNQDIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQAS----FKNDVS 385
Cdd:smart00242  219 --PEDYRYLNQGGCLTVDGIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAAstvkDKEELS 296
                           330       340       350       360       370       380       390       400
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       386 AICSNLGVDEKDFQTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDI 465
Cdd:smart00242  297 NAAELLGVDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINQSLSFKDGSTYFIGVLDI 376
                           410       420       430       440       450       460       470       480
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       466 AGFEIFENNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGkDLQLTIDLIESKgpPTGVLPLLDEEAV 545
Cdd:smart00242  377 YGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFF-DNQDCIDLIEKK--PPGILSLLDEECR 453
                           490       500       510       520       530       540       550       560
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       546 LPKSTDESFYSKLISTWDQNSSKFKRSRL-KNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQP 624
Cdd:smart00242  454 FPKGTDQTFLEKLNQHHKKHPHFSKPKKKgRTEFIIKHYAGDVTYDVTGFLEKNKDTLSDDLIELLQSSKNPLIASLFPS 533
                           570       580       590       600       610       620       630       640
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       625 EGEKSSSagveanisnqevkksarTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCN 704
Cdd:smart00242  534 GVSNAGS-----------------KKRFQTVGSQFKEQLNELMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYL 596
                           650       660       670       680       690       700       710       720
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       705 GVLEGIRLAREGYPNRIAFQEFFQRYRILYPEnsttttFSSKLKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFKAGVLA 784
Cdd:smart00242  597 GVLENIRIRRAGFPYRLPFDEFLQRYRVLLPD------TWPPWGGDAKKACEALLQSLGLDEDEYQLGKTKVFLRPGQLA 670

                    ....*..
gi 730092       785 DLEKQKD 791
Cdd:smart00242  671 ELEELRE 677
MYSc cd00124
Myosin motor domain superfamily; Myosin motor domain. The catalytic (head) domain has ATPase ...
89-779 0e+00

Myosin motor domain superfamily; Myosin motor domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276950  Cd Length: 633  Bit Score: 764.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldeNSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd00124    1 AAILHNLRERYARDLIYTYVGDILVAVNPFKWLPLYSEEVMEKYRGK-----------GRSADLPPHVFAVADAAYRAML 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASItSGSPSNIAPVSGSSIVEsfemKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd00124   70 RDGQNQSILISGESGAGKTETTKLVLKYLAAL-SGSGSSKSSSSASSIEQ----QILQSNPILEAFGNAKTVRNDNSSRF 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSR--NVKDYKILSNSNQDII 326
Cdd:cd00124  145 GKFIELQFDPTGRLVGASIETYLLEKSRVVSQAPGERNFHIFYQLLAGLSDGAREELKLELLlsYYYLNDYLNSSGCDRI 224
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    327 PGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASF-----KNDVSAICSNLGVDEKDFQTA 401
Cdd:cd00124  225 DGVDDAEEFQELLDALDVLGFSDEEQDSIFRILAAILHLGNIEFEEDEEDEDSSaevadDESLKAAAKLLGVDAEDLEEA 304
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    402 ILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNL--DHGSATLNYIGLLDIAGFEIFENNSFEQL 479
Cdd:cd00124  305 LTTRTIKVGGETITKPLTVEQAEDARDALAKALYSRLFDWLVNRINAALspTDAAESTSFIGILDIFGFENFEVNSFEQL 384
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    480 CINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIEskGPPTGVLPLLDEEAVLPKSTDESFYSKLI 559
Cdd:cd00124  385 CINYANEKLQQFFNQHVFKLEQEEYEEEGIDWSFIDF-PDNQDCLDLIE--GKPLGILSLLDEECLFPKGTDATFLEKLY 461
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    560 STWDQNSSKFKRSRLKNG-FILKHYAGDVEYTVEGWLSKNKDPLNDNllsllsssqndiISKLFQpegeksssagveani 638
Cdd:cd00124  462 SAHGSHPRFFSKKRKAKLeFGIKHYAGDVTYDADGFLEKNKDTLPPD------------LVDLLR--------------- 514
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    639 snqevkksartstfktTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYP 718
Cdd:cd00124  515 ----------------SGSQFRSQLDALMDTLNSTQPHFVRCIKPNDEKKPGLFDPELVLEQLRCAGVLEAVRIRRAGYP 578
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092    719 NRIAFQEFFQRYRILYPEnsttttFSSKLKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd00124  579 VRLPFDEFLKRYRILAPG------ATEKASDSKKAAVLALLLLLKLDSSGYQLGKTKVFLR 633
MYSc_Myo5 cd01380
class V myosin, motor domain; Myo5, also called heavy chain 12, myoxin, are dimeric myosins ...
89-779 0e+00

class V myosin, motor domain; Myo5, also called heavy chain 12, myoxin, are dimeric myosins that transport a variety of intracellular cargo processively along actin filaments, such as melanosomes, synaptic vesicles, vacuoles, and mRNA. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. It also contains a IQ domain and a globular DIL domain. Myosin V is a class of actin-based motor proteins involved in cytoplasmic vesicle transport and anchorage, spindle-pole alignment and mRNA translocation. The protein encoded by this gene is abundant in melanocytes and nerve cells. Mutations in this gene cause Griscelli syndrome type-1 (GS1), Griscelli syndrome type-3 (GS3) and neuroectodermal melanolysosomal disease, or Elejalde disease. Multiple alternatively spliced transcript variants encoding different isoforms have been reported, but the full-length nature of some variants has not been determined. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Note that the Dictyostelium myoVs are not contained in this child group. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276831 [Multi-domain]  Cd Length: 629  Bit Score: 673.10  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYdCD--LIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlSKSRLDensheklpPHIFAIAEEAYEN 166
Cdd:cd01380    1 PAVLHNLKVRF-CQrnAIYTYCGIVLVAINPYEDLPIYGEDIIQAYSGQ----NMGELD--------PHIFAIAEEAYRQ 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    167 LLSEGKDQSILVTGESGAGKTENTKKILQYLASitsgspsniapVSGSSIVES-FEMKILQSNPILESFGNAQTVRNNNS 245
Cdd:cd01380   68 MARDEKNQSIIVSGESGAGKTVSAKYAMRYFAT-----------VGGSSSGETqVEEKVLASNPIMEAFGNAKTTRNDNS 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    246 SRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSrnVKDYKILSNSNQDI 325
Cdd:cd01380  137 SRFGKYIEILFDKNYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCAAASLPELKELHLGS--AEDFFYTNQGGSPV 214
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    326 IPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKNDVSAI---CSNLGVDEKDFQTAI 402
Cdd:cd01380  215 IDGVDDAAEFEETRKALTLLGISEEEQMEIFRILAAILHLGNVEIKATRNDSASISPDDEHLqiaCELLGIDESQLAKWL 294
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    403 LRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSAT--LNYIGLLDIAGFEIFENNSFEQLC 480
Cdd:cd01380  295 CKRKIVTRSEVIVKPLTLQQAIVARDALAKHIYAQLFDWIVDRINKALASPVKEkqHSFIGVLDIYGFETFEVNSFEQFC 374
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    481 INYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgppTGVLPLLDEEAVLPKSTDESFYSKLIS 560
Cdd:cd01380  375 INYANEKLQQQFNQHVFKLEQEEYVKEEIEWSFIDF-YDNQPCIDLIEGK---LGILDLLDEECRLPKGSDENWAQKLYN 450
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    561 TWDQNSSK-FKRSRLKNG-FILKHYAGDVEYTVEGWLSKNKDPLNDNllsllsssQNDIIsklfqpegeKSSsagveani 638
Cdd:cd01380  451 QHLKKPNKhFKKPRFSNTaFIVKHFADDVEYQVEGFLEKNRDTVSEE--------HLNVL---------KAS-------- 505
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    639 snqevkksarTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYP 718
Cdd:cd01380  506 ----------KNRKKTVGSQFRDSLILLMETLNSTTPHYVRCIKPNDEKLPFTFDPKRVVQQLRACGVLETIRISAAGFP 575
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092    719 NRIAFQEFFQRYRILYPENSTTTTfssklkaSTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd01380  576 SRWTYEEFFSRYRVLLPSKEWLRD-------DKKKTCENILENLILDPDKYQFGKTKIFFR 629
MYSc_Myh10 cd14920
class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy ...
90-779 0e+00

class II myosin heavy chain 10, motor domain; Myosin motor domain of non-muscle myosin heavy chain 10 (also called NMMHCB). Mutations in this gene have been associated with May-Hegglin anomaly and developmental defects in brain and heart. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276952 [Multi-domain]  Cd Length: 673  Bit Score: 660.94  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldeNSHEkLPPHIFAIAEEAYENLLS 169
Cdd:cd14920    2 SVLHNLKDRYYSGLIYTYSGLFCVVINPYKNLPIYSENIIEMYRGK-----------KRHE-MPPHIYAISESAYRCMLQ 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNiapvSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd14920   70 DREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKGR----KDHNIPGELERQLLQANPILESFGNAKTVKNDNSSRFG 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRNvkDYKILSNSNQDIiPGI 329
Cdd:cd14920  146 KFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFN--NYRFLSNGYIPI-PGQ 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    330 NDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDR-AEQASFKNDVSA--ICSNLGVDEKDFQTAILRPR 406
Cdd:cd14920  223 QDKDNFQETMEAMHIMGFSHEEILSMLKVVSSVLQFGNISFKKERnTDQASMPENTVAqkLCHLLGMNVMEFTRAILTPR 302
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    407 SKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSAT-LNYIGLLDIAGFEIFENNSFEQLCINYTN 485
Cdd:cd14920  303 IKVGRDYVQKAQTKEQADFAVEALAKATYERLFRWLVHRINKALDRTKRQgASFIGILDIAGFEIFELNSFEQLCINYTN 382
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    486 EKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESKGPPTGVLPLLDEEAVLPKSTDESFYSKLIStwDQN 565
Cdd:cd14920  383 EKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIERPANPPGVLALLDEECWFPKATDKTFVEKLVQ--EQG 460
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    566 S-SKFKRSRLKNG---FILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPE-----GEKSSSAGVEA 636
Cdd:cd14920  461 ShSKFQKPRQLKDkadFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLHQSSDRFVAELWKDVdrivgLDQVTGMTETA 540
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    637 NISNQEVKKsartSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREG 716
Cdd:cd14920  541 FGSAYKTKK----GMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQG 616
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 730092    717 YPNRIAFQEFFQRYRILYPeNSTTTTFssklkASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14920  617 FPNRIVFQEFRQRYEILTP-NAIPKGF-----MDGKQACERMIRALELDPNLYRIGQSKIFFR 673
MYSc_Myh2_insects_mollusks cd14911
class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle ...
90-779 0e+00

class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle myosin heavy chain 2 (also called MYH2A, MYHSA2, MyHC-IIa, MYHas8, MyHC-2A) in insects and mollusks. This gene encodes a member of the class II or conventional myosin heavy chains, and functions in skeletal muscle contraction. Mutations in this gene results in inclusion body myopathy-3 and familial congenital myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276876 [Multi-domain]  Cd Length: 674  Bit Score: 643.96  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldeNSHEkLPPHIFAIAEEAYENLLS 169
Cdd:cd14911    2 SVLHNIKDRYYSGLIYTYSGLFCVVVNPYKKLPIYTEKIMERYKGI-----------KRHE-VPPHVFAITDSAYRNMLG 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASITSGSP--SNIAPVSGSS---IVESFEMKILQSNPILESFGNAQTVRNNN 244
Cdd:cd14911   70 DREDQSILCTGESGAGKTENTKKVIQFLAYVAASKPkgSGAVPHPAVNpavLIGELEQQLLQANPILEAFGNAKTVKNDN 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    245 SSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKsrNVKDYKILSNSNQd 324
Cdd:cd14911  150 SSRFGKFIRINFDASGFISGANIETYLLEKSRAIRQAKDERTFHIFYQLLAGATPEQREKFILD--DVKSYAFLSNGSL- 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    325 IIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDR-AEQASFKNDVSA--ICSNLGVDEKDFQTA 401
Cdd:cd14911  227 PVPGVDDYAEFQATVKSMNIMGMTSEDFNSIFRIVSAVLLFGSMKFRQERnNDQATLPDNTVAqkIAHLLGLSVTDMTRA 306
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    402 ILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSAT-LNYIGLLDIAGFEIFENNSFEQLC 480
Cdd:cd14911  307 FLTPRIKVGRDFVTKAQTKEQVEFAVEAIAKACYERMFKWLVNRINRSLDRTKRQgASFIGILDMAGFEIFELNSFEQLC 386
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    481 INYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgpPTGVLPLLDEEAVLPKSTDESFYSKLIS 560
Cdd:cd14911  387 INYTNEKLQQLFNHTMFILEQEEYQREGIEWKFIDFGLDLQPTIDLIDK---PGGIMALLDEECWFPKATDKTFVDKLVS 463
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    561 TWDQNsSKFKRSRLKN--GFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpegEKSSSAGVEANI 638
Cdd:cd14911  464 AHSMH-PKFMKTDFRGvaDFAIVHYAGRVDYSAAKWLMKNMDPLNENIVSLLQGSQDPFVVNIWK---DAEIVGMAQQAL 539
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    639 SNQEVKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYP 718
Cdd:cd14911  540 TDTQFGARTRKGMFRTVSHLYKEQLAKLMDTLRNTNPNFVRCIIPNHEKRAGKIDAPLVLDQLRCNGVLEGIRICRQGFP 619
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092    719 NRIAFQEFFQRYRILYPeNSTTTTFSSKLKAstkqnCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14911  620 NRIPFQEFRQRYELLTP-NVIPKGFMDGKKA-----CEKMIQALELDSNLYRVGQSKIFFR 674
MYSc_Myh18 cd14932
class II myosin heavy chain 18, motor domain; Myosin motor domain of muscle myosin heavy chain ...
90-779 0e+00

class II myosin heavy chain 18, motor domain; Myosin motor domain of muscle myosin heavy chain 18. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276895 [Multi-domain]  Cd Length: 676  Bit Score: 610.11  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldeNSHEkLPPHIFAIAEEAYENLLS 169
Cdd:cd14932    2 SVLHNLKERYYSGLIYTYSGLFCVVINPYKYLPIYSEEIVNMYKGK-----------KRHE-MPPHIYAITDTAYRSMMQ 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd14932   70 DREDQSILCTGESGAGKTENTKKVIQYLAYVASSFKTKKDQSSIALSHGELEKQLLQANPILEAFGNAKTVKNDNSSRFG 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRNvkDYKILSNSNQdIIPGI 329
Cdd:cd14932  150 KFIRINFDVNGYIVGANIETYLLEKSRAIRQAKDERAFHIFYYLLTGAGDKLRSELCLEDYS--KYRFLSNGNV-TIPGQ 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    330 NDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDR-AEQASFKNDVSA--ICSNLGVDEKDFQTAILRPR 406
Cdd:cd14932  227 QDKELFAETMEAFRIMSIPEEEQTGLLKVVSAVLQLGNMSFKKERnSDQASMPDDTAAqkVCHLLGMNVTDFTRAILSPR 306
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    407 SKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSAT-LNYIGLLDIAGFEIFENNSFEQLCINYTN 485
Cdd:cd14932  307 IKVGRDYVQKAQTQEQAEFAVEALAKASYERMFRWLVMRINKALDKTKRQgASFIGILDIAGFEIFELNSFEQLCINYTN 386
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    486 EKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESKGPPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQN 565
Cdd:cd14932  387 EKLQQLFNHTMFILEQEEYQREGIEWSFIDFGLDLQPCIELIEKPNGPPGILALLDEECWFPKATDKSFVEKVVQEQGNN 466
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    566 SSKFKRSRLKN--GFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPEGEKSSSAGVEANISNQEV 643
Cdd:cd14932  467 PKFQKPKKLKDdaDFCIIHYAGKVDYKANEWLMKNMDPLNENVATLLNQSTDKFVSELWKDVDRIVGLDKVAGMGESLHG 546
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    644 KKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIAF 723
Cdd:cd14932  547 AFKTRKGMFRTVGQLYKEQLMNLMTTLRNTNPNFVRCIIPNHEKKAGKLAHHLVLDQLRCNGVLEGIRICRQGFPNRIVF 626
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 730092    724 QEFFQRYRILYPeNSTTTTFssklkASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14932  627 QEFRQRYEILTP-NAIPKGF-----MDGKQACVLMVKALELDPNLYRIGQSKVFFR 676
MYSc_Myo22 cd14883
class XXII myosin, motor domain; These myosins possess an extended neck with multiple IQ ...
90-779 0e+00

class XXII myosin, motor domain; These myosins possess an extended neck with multiple IQ motifs such as found in class V, VIII, XI, and XIII myosins. These myosins are defined by two tandem MyTH4 and FERM domains. The apicomplexan, but not diatom myosins contain 4-6 WD40 repeats near the end of the C-terminal tail which suggests a possible function of these myosins in signal transduction and transcriptional regulation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276849 [Multi-domain]  Cd Length: 661  Bit Score: 608.55  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHnkhnrlSKSRLDenshekLPPHIFAIAEEAYENLLS 169
Cdd:cd14883    2 GINTNLKVRYKKDLIYTYTGSILVAVNPYKELPIYTQDIVKQYF------GKRMGA------LPPHIFALAEAAYTNMQE 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASITSGSpsniapvsgsSIVESfemKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd14883   70 DGKNQSVIISGESGAGKTETTKLILQYLCAVTNNH----------SWVEQ---QILEANTILEAFGNAKTVRNDNSSRFG 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSG-LDDSELKNLrLKSRNVKDYKILSNSNQDIIPG 328
Cdd:cd14883  137 KFIEVCFDASGHIKGAIIQDYLLEQSRITFQAPGERNYHVFYQLLAGaKHSKELKEK-LKLGEPEDYHYLNQSGCIRIDN 215
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKND----VSAICSNLGVDEKDFQTAILR 404
Cdd:cd14883  216 INDKKDFDHLRLAMNVLGIPEEMQEGIFSVLSAILHLGNLTFEDIDGETGALTVEdkeiLKIVAKLLGVDPDKLKKALTI 295
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    405 PRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINYT 484
Cdd:cd14883  296 RQINVRGNVTEIPLKVQEARDNRDAMAKALYSRTFAWLVNHINSCTNPGQKNSRFIGVLDIFGFENFKVNSFEQLCINYT 375
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    485 NEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIEskGPPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQ 564
Cdd:cd14883  376 NEKLHKFFNHYVFKLEQEEYEKEGINWSHIVF-TDNQECLDLIE--KPPLGILKLLDEECRFPKGTDLTYLEKLHAAHEK 452
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    565 NSS--KFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPEGEkssSAGVEANISNQE 642
Cdd:cd14883  453 HPYyeKPDRRRWKTEFGVKHYAGEVTYTVQGFLDKNKDTQQDDLFDLMSRSKNKFVKELFTYPDL---LALTGLSISLGG 529
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    643 VKKSARTSTFKTT-SSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRI 721
Cdd:cd14883  530 DTTSRGTSKGKPTvGDTFKHQLQSLVDVLSATQPWYVRCIKPNSLKEPNVFDDELVLAQLRYAGMLEIIRIRKEGFPIHL 609
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 730092    722 AFQEFFQRYRILYPENSTTTtfssklKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14883  610 TFKEFVDRYLCLDPRARSAD------HKETCGAVRALMGLGGLPEDEWQVGKTKVFLR 661
MYSc_Myo8 cd01383
class VIII myosin, motor domain; These plant-specific type VIII myosins has been associated ...
89-779 0e+00

class VIII myosin, motor domain; These plant-specific type VIII myosins has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. It also contains IQ domains Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276834  Cd Length: 647  Bit Score: 608.16  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHNrlsksrldenshekLPPHIFAIAEEAYENLL 168
Cdd:cd01383    1 PSVLHNLEYRYSQDIIYTKAGPVLIAVNPFKDVPLYGNEFITAYRQKLL--------------DSPHVYAVADTAYREMM 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSGspsniapvsGSSIvesfEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd01383   67 RDEINQSIIISGESGAGKTETAKIAMQYLAALGGG---------SSGI----ENEILQTNPILEAFGNAKTLRNDNSSRF 133
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSrnVKDYKILSNSNQDIIPG 328
Cdd:cd01383  134 GKLIDIHFDAAGKICGAKIQTYLLEKSRVVQLANGERSYHIFYQLCAGASPALREKLNLKS--ASEYKYLNQSNCLTIDG 211
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEF-VSDRAEQASFKND--VSAICSNLGVDEKDFQTAILRP 405
Cdd:cd01383  212 VDDAKKFHELKEALDTVGISKEDQEHIFQMLAAVLWLGNISFqVIDNENHVEVVADeaVSTAASLLGCNANDLMLALSTR 291
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    406 RSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHG-SATLNYIGLLDIAGFEIFENNSFEQLCINYT 484
Cdd:cd01383  292 KIQAGGDKIVKKLTLQQAIDARDALAKAIYASLFDWLVEQINKSLEVGkRRTGRSISILDIYGFESFQKNSFEQLCINYA 371
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    485 NEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQ 564
Cdd:cd01383  372 NERLQQHFNRHLFKLEQEEYELDGIDWTKVDF-EDNQECLDLIEKK--PLGLISLLDEESNFPKATDLTFANKLKQHLKS 448
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    565 NSSKFKRSRlkNGFILKHYAGDVEYTVEGWLSKNKDPLNdnllsllsssqNDIISKLFQPEGEKSSSAGVEANISNQEVK 644
Cdd:cd01383  449 NSCFKGERG--GAFTIRHYAGEVTYDTSGFLEKNRDLLH-----------SDLIQLLSSCSCQLPQLFASKMLDASRKAL 515
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    645 KSARTSTF----KTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNR 720
Cdd:cd01383  516 PLTKASGSdsqkQSVATKFKGQLFKLMQRLENTTPHFIRCIKPNNKQLPGVFDQDLVLQQLRCCGVLEVVRISRSGYPTR 595
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 730092    721 IAFQEFFQRYRILYPENSTTTTFSSKLKASTKQNCEFLltslqldTKVYKIGNTKLFFK 779
Cdd:cd01383  596 MTHQEFARRYGFLLPEDVSASQDPLSTSVAILQQFNIL-------PEMYQVGYTKLFFR 647
MYSc_Myh1_insects_crustaceans cd14909
class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle ...
89-779 0e+00

class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle myosin heavy chain 1 (also called MYHSA1, MYHa, MyHC-2X/D, MGC133384) in insects and crustaceans. Myh1 is a type I skeletal muscle myosin that in Humans is encoded by the MYH1 gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276874  Cd Length: 666  Bit Score: 598.75  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksRLDEnshekLPPHIFAIAEEAYENLL 168
Cdd:cd14909    1 ASVLHNLRQRYYAKLIYTYSGLFCVAINPYKRYPVYTNRCAKMYRGK-------RRNE-----VPPHIFAISDGAYVDML 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSIvesfEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd14909   69 TNHVNQSMLITGESGAGKTENTKKVIAYFATVGASKKTDEAAKSKGSL----EDQVVQTNPVLEAFGNAKTVRNDNSSRF 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGlDDSELKNLRLKSRNVKDYKILSNSnQDIIPG 328
Cdd:cd14909  145 GKFIRIHFGPTGKLAGADIETYLLEKARVISQQSLERSYHIFYQIMSG-SVPGVKEMCLLSDNIYDYYIVSQG-KVTVPN 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVS-DRAEQASF--KNDVSAICSNLGVDEKDFQTAILRP 405
Cdd:cd14909  223 VDDGEEFSLTDQAFDILGFTKQEKEDVYRITAAVMHMGGMKFKQrGREEQAEQdgEEEGGRVSKLFGCDTAELYKNLLKP 302
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    406 RSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINYTN 485
Cdd:cd14909  303 RIKVGNEFVTQGRNVQQVTNSIGALCKGVFDRLFKWLVKKCNETLDTQQKRQHFIGVLDIAGFEIFEYNGFEQLCINFTN 382
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    486 EKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgpPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQN 565
Cdd:cd14909  383 EKLQQFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIEK---PMGILSILEEESMFPKATDQTFSEKLTNTHLGK 459
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    566 SSKFKRSR-LKNG-----FILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqpegekSSSAGVEANIS 639
Cdd:cd14909  460 SAPFQKPKpPKPGqqaahFAIAHYAGCVSYNITGWLEKNKDPLNDTVVDQFKKSQNKLLIEIF------ADHAGQSGGGE 533
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    640 NQEVKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPN 719
Cdd:cd14909  534 QAKGGRGKKGGGFATVSSAYKEQLNSLMTTLRSTQPHFVRCIIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPN 613
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    720 RIAFQEFFQRYRILYPEnsttttfSSKLKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14909  614 RMMYPDFKMRYKILNPA-------GIQGEEDPKKAAEIILESIALDPDQYRLGHTKVFFR 666
MYSc_Myh7b cd14927
class II myosin heavy chain 7b, motor domain; Myosin motor domain of cardiac muscle, beta ...
90-779 0e+00

class II myosin heavy chain 7b, motor domain; Myosin motor domain of cardiac muscle, beta myosin heavy chain 7b (also called KIAA1512, dJ756N5.1, MYH14, MHC14). MYH7B is a slow-twitch myosin. Mutations in this gene result in one form of autosomal dominant hearing impairment. Multiple transcript variants encoding different isoforms have been found for this gene. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276953 [Multi-domain]  Cd Length: 676  Bit Score: 598.48  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnRLSKSrldensheklPPHIFAIAEEAYENLLS 169
Cdd:cd14927    2 SVLHNLRRRYSRWMIYTYSGLFCVTVNPYKWLPVYTAPVVAAYKGK--RRSEA----------PPHIYAIADNAYNDMLR 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASITS--GSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSR 247
Cdd:cd14927   70 NRENQSMLITGESGAGKTVNTKRVIQYFAIVAAlgDGPGKKAQFLATKTGGTLEDQIIEANPAMEAFGNAKTLRNDNSSR 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    248 FGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGlDDSELKNLRLKSRNVKDYKILSNSnQDIIP 327
Cdd:cd14927  150 FGKFIRIHFGPTGKLASADIDIYLLEKSRVIFQQPGERSYHIYYQILSG-KKPELQDMLLVSMNPYDYHFCSQG-VTTVD 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    328 GINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVS-DRAEQASFKNDVSAICSN--LGVDEKDFQTAILR 404
Cdd:cd14927  228 NMDDGEELMATDHAMDILGFSPDEKYGCYKIVGAIMHFGNMKFKQkQREEQAEADGTESADKAAylMGVSSADLLKGLLH 307
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    405 PRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINYT 484
Cdd:cd14927  308 PRVKVGNEYVTKGQSVEQVVYAVGALAKATYDRMFKWLVSRINQTLDTKLPRQFFIGVLDIAGFEIFEFNSFEQLCINFT 387
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    485 NEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgpPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQ 564
Cdd:cd14927  388 NEKLQQFFNHHMFILEQEEYKREGIEWVFIDFGLDLQACIDLIEK---PLGILSILEEECMFPKASDASFKAKLYDNHLG 464
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    565 NSSKFKRSRL------KNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqpEGEKSSSAGVEANI 638
Cdd:cd14927  465 KSPNFQKPRPdkkrkyEAHFEVVHYAGVVPYNIVGWLDKNKDPLNETVVAIFQKSQNKLLATLY--ENYVGSDSTEDPKS 542
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    639 SNQEVKKSArtSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYP 718
Cdd:cd14927  543 GVKEKRKKA--ASFQTVSQLHKENLNKLMTNLRATQPHFVRCIIPNETKTPGVMDPFLVLHQLRCNGVLEGIRICRKGFP 620
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092    719 NRIAFQEFFQRYRILYPENSTTTTFSSKLKASTKqncefLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14927  621 NRILYADFKQRYRILNPSAIPDDKFVDSRKATEK-----LLGSLDIDHTQYQFGHTKVFFK 676
MYSc_Myh3 cd14913
class II myosin heavy chain 3, motor domain; Myosin motor domain of fetal skeletal muscle ...
89-779 0e+00

class II myosin heavy chain 3, motor domain; Myosin motor domain of fetal skeletal muscle myosin heavy chain 3 (MYHC-EMB, MYHSE1, HEMHC, SMHCE) in tetrapods including mammals, lizards, and frogs. This gene is a member of the MYH family and encodes a protein with an IQ domain and a myosin head-like domain. Mutations in this gene have been associated with two congenital contracture (arthrogryposis) syndromes, Freeman-Sheldon syndrome and Sheldon-Hall syndrome. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276878 [Multi-domain]  Cd Length: 668  Bit Score: 594.34  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldenSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14913    1 PAVLYNLKDRYTSWMIYTYSGLFCVTVNPYKWLPVYNPEVVEGYRGK------------KRQEAPPHIFSISDNAYQFML 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASItsGSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd14913   69 TDRENQSILITGESGAGKTVNTKRVIQYFATI--AATGDLAKKKDSKMKGTLEDQIISANPLLEAFGNAKTVRNDNSSRF 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGlDDSELKNLRLKSRNVKDYKILSNSnQDIIPG 328
Cdd:cd14913  147 GKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQILSN-KKPELIELLLITTNPYDYPFISQG-EILVAS 224
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVS-DRAEQAsfKNDVSAICSN----LGVDEKDFQTAIL 403
Cdd:cd14913  225 IDDAEELLATDSAIDILGFTPEEKSGLYKLTGAVMHYGNMKFKQkQREEQA--EPDGTEVADKtaylMGLNSSDLLKALC 302
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    404 RPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINY 483
Cdd:cd14913  303 FPRVKVGNEYVTKGQTVDQVHHAVNALSKSVYEKLFLWMVTRINQQLDTKLPRQHFIGVLDIAGFEIFEYNSLEQLCINF 382
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    484 TNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgpPTGVLPLLDEEAVLPKSTDESFYSKLISTWD 563
Cdd:cd14913  383 TNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLAACIELIEK---PMGIFSILEEECMFPKATDTSFKNKLYDQHL 459
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    564 QNSSKFKRSRLKNG-----FILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqpegekSSSAGVEANI 638
Cdd:cd14913  460 GKSNNFQKPKVVKGraeahFSLIHYAGTVDYSVSGWLEKNKDPLNETVVGLYQKSSNRLLAHLY------ATFATADADS 533
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    639 SNQEVKKSaRTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYP 718
Cdd:cd14913  534 GKKKVAKK-KGSSFQTVSALFRENLNKLMSNLRTTHPHFVRCIIPNETKTPGAMEHSLVLHQLRCNGVLEGIRICRKGFP 612
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092    719 NRIAFQEFFQRYRILYPENSTTTTFssklkASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14913  613 NRILYGDFKQRYRVLNASAIPEGQF-----IDSKKACEKLLASIDIDHTQYKFGHTKVFFK 668
MYSc_Myo7 cd01381
class VII myosin, motor domain; These monomeric myosins have been associated with functions in ...
90-779 0e+00

class VII myosin, motor domain; These monomeric myosins have been associated with functions in sensory systems such as vision and hearing. Mammalian myosin VII has a tail with 2 MyTH4 domains, 2 FERM domains, and a SH3 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276832  Cd Length: 648  Bit Score: 594.23  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksRLDEnshekLPPHIFAIAEEAYENLLS 169
Cdd:cd01381    2 GILRNLLIRYREKLIYTYTGSILVAVNPYQILPIYTAEQIRLYRNK-------KIGE-----LPPHIFAIADNAYTNMKR 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASItSGSPSNIapvsgssivesfEMKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd01381   70 NKRDQCVVISGESGAGKTESTKLILQYLAAI-SGQHSWI------------EQQILEANPILEAFGNAKTIRNDNSSRFG 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKsrNVKDYKILSNSNQDIIPGI 329
Cdd:cd01381  137 KYIDIHFNKNGVIEGAKIEQYLLEKSRIVSQAPDERNYHIFYCMLAGLSAEEKKKLELG--DASDYYYLTQGNCLTCEGR 214
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    330 NDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEF---VSDRAEQASFKN--DVSAICSNLGVDEKDFQTAILR 404
Cdd:cd01381  215 DDAAEFADIRSAMKVLMFTDEEIWDIFKLLAAILHLGNIKFeatVVDNLDASEVRDppNLERAAKLLEVPKQDLVDALTT 294
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    405 PRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMIN----KNLDHgSATLNYIGLLDIAGFEIFENNSFEQLC 480
Cdd:cd01381  295 RTIFTRGETVVSPLSAEQALDVRDAFVKGIYGRLFIWIVNKINsaiyKPRGT-DSSRTSIGVLDIFGFENFEVNSFEQLC 373
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    481 INYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDESFYSKLIS 560
Cdd:cd01381  374 INFANENLQQFFVRHIFKLEQEEYDKEGINWQHIEF-VDNQDVLDLIALK--PMNIMSLIDEESKFPKGTDQTMLEKLHS 450
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    561 TWDQNSSKFK-RSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPE-GEKSSSAgveani 638
Cdd:cd01381  451 THGNNKNYLKpKSDLNTSFGINHFAGVVFYDTRGFLEKNRDTFSADLLQLVQSSKNKFLKQLFNEDiSMGSETR------ 524
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    639 snqevKKSartstfKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYP 718
Cdd:cd01381  525 -----KKS------PTLSSQFRKSLDQLMKTLSACQPFFVRCIKPNEYKKPMLFDRELCVRQLRYSGMMETIRIRKAGYP 593
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092    719 NRIAFQEFFQRYRILYPenSTTTTFSSKLKASTKQNCEFLLtslqLDTKVYKIGNTKLFFK 779
Cdd:cd01381  594 IRHTFEEFVERYRVLVP--GIPPAHKTDCRAATRKICCAVL----GGDADYQLGKTKIFLK 648
MYSc_Myo11 cd01384
class XI myosin, motor domain; These plant-specific type XI myosin are involved in organelle ...
89-779 0e+00

class XI myosin, motor domain; These plant-specific type XI myosin are involved in organelle transport. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle.


Pssm-ID: 276835  Cd Length: 647  Bit Score: 590.80  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNL-NLYSEDHINLYHNKhnrlsksRLDEnshekLPPHIFAIAEEAYENL 167
Cdd:cd01384    1 PGVLHNLKVRYELDEIYTYTGNILIAVNPFKRLpHLYDAHMMEQYKGA-------PLGE-----LSPHVFAVADAAYRAM 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    168 LSEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVsgssivesfEMKILQSNPILESFGNAQTVRNNNSSR 247
Cdd:cd01384   69 INEGKSQSILVSGESGAGKTETTKMLMQYLAYMGGRAVTEGRSV---------EQQVLESNPLLEAFGNAKTVRNNNSSR 139
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    248 FGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKsrNVKDYKILSNSNQDIIP 327
Cdd:cd01384  140 FGKFVEIQFDDAGRISGAAIRTYLLERSRVVQVSDPERNYHCFYQLCAGAPPEDREKYKLK--DPKQFHYLNQSKCFELD 217
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    328 GINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFV-SDRAEQASFKNDVS----AICSNL-GVDEKDFQTA 401
Cdd:cd01384  218 GVDDAEEYRATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFSkGEEDDSSVPKDEKSefhlKAAAELlMCDEKALEDA 297
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    402 ILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCI 481
Cdd:cd01384  298 LCKRVIVTPDGIITKPLDPDAATLSRDALAKTIYSRLFDWLVDKINRSIGQDPNSKRLIGVLDIYGFESFKTNSFEQFCI 377
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    482 NYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDESFYSKLIST 561
Cdd:cd01384  378 NLANEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEF-VDNQDVLDLIEKK--PGGIIALLDEACMFPRSTHETFAQKLYQT 454
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    562 WDQNS--SKFKRSRlkNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPEGEKSSSAGveanis 639
Cdd:cd01384  455 LKDHKrfSKPKLSR--TDFTIDHYAGDVTYQTDLFLDKNKDYVVAEHQALLNASKCPFVAGLFPPLPREGTSSS------ 526
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    640 nqevkksartSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPN 719
Cdd:cd01384  527 ----------SKFSSIGSRFKQQLQELMETLNTTEPHYIRCIKPNNLLKPGIFENANVLQQLRCGGVLEAVRISCAGYPT 596
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    720 RIAFQEFFQRYRILYPEnsttttfSSKLKASTKQNCEFLLTSLQLDTkvYKIGNTKLFFK 779
Cdd:cd01384  597 RKPFEEFLDRFGLLAPE-------VLKGSDDEKAACKKILEKAGLKG--YQIGKTKVFLR 647
MYSc_Myo1 cd01378
class I myosin, motor domain; Myosin I generates movement at the leading edge in cell motility, ...
90-779 0e+00

class I myosin, motor domain; Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. There are 5 myosin subclasses with subclasses c/h, d/g, and a/b have an IQ domain and a TH1 domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276829  Cd Length: 652  Bit Score: 582.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhNRLsksrldensheKLPPHIFAIAEEAYENLLS 169
Cdd:cd01378    2 AINENLKKRFENDEIYTYIGHVLISVNPFKDLGIYTDEVLESYRGK-NRY-----------EVPPHVFALADSAYRNMKS 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSgssivesfEMkILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd01378   70 EKENQCVIISGESGAGKTEASKRIMQYIAAVSGGSESEVERVK--------DM-LLASNPLLEAFGNAKTLRNDNSSRFG 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRNvkDYKILSNSNQDIIPGI 329
Cdd:cd01378  141 KYMEIQFDFKGEPVGGHITNYLLEKSRVVGQIKGERNFHIFYQLLKGASQEYLQELGLQRPE--QYYYYSKSGCFDVDGI 218
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    330 NDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQA--SFKNDVSAICSNLGVDEKDFQTAILRPRS 407
Cdd:cd01378  219 DDAADFKEVLNAMKVIGFTEEEQDSIFRILAAILHLGNIQFAEDEEGNAaiSDTSVLDFVAYLLGVDPDQLEKALTHRTI 298
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    408 KAGKEWVSQSK---NSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNY-IGLLDIAGFEIFENNSFEQLCINY 483
Cdd:cd01378  299 ETGGGGRSVYEvplNVEQAAYARDALAKAIYSRLFDWIVERINKSLAAKSGGKKKvIGVLDIYGFEIFEKNSFEQFCINY 378
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    484 TNEKLQQFFNNhmFVL--EQSEYLKENIQWDYIDYgKDLQLTIDLIESKgpPTGVLPLLDEE-AVLPKSTDESFYSKLIS 560
Cdd:cd01378  379 VNEKLQQIFIE--LTLkaEQEEYVREGIEWTPIKY-FNNKIICDLIEEK--PPGIFAILDDAcLTAGDATDQTFLQKLNQ 453
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    561 TWDQNSSKFKRSRLK----NGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqPEGeksssagvea 636
Cdd:cd01378  454 LFSNHPHFECPSGHFelrrGEFRIKHYAGDVTYNVEGFLDKNKDLLFKDLKELMQSSSNPFLRSLF-PEG---------- 522
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    637 niSNQEVKKSARTSTFKTtssrhREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREG 716
Cdd:cd01378  523 --VDLDSKKRPPTAGTKF-----KNSANALVETLMKKQPSYIRCIKPNDNKSPGEFDEELVLHQVKYLGLLENVRVRRAG 595
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 730092    717 YPNRIAFQEFFQRYRILYPENSTTTTFSSklkastKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd01378  596 FAYRQTYEKFLERYKLLSPKTWPAWDGTW------QGGVESILKDLNIPPEEYQMGKTKIFIR 652
MYSc_Myh19 cd15896
class II myosin heavy chain19, motor domain; Myosin motor domain of muscle myosin heavy chain ...
90-779 0e+00

class II myosin heavy chain19, motor domain; Myosin motor domain of muscle myosin heavy chain 19. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276899 [Multi-domain]  Cd Length: 675  Bit Score: 580.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldeNSHEkLPPHIFAIAEEAYENLLS 169
Cdd:cd15896    2 SVLHNLKERYYSGLIYTYSGLFCVVINPYKNLPIYSEEIVEMYKGK-----------KRHE-MPPHIYAITDTAYRSMMQ 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd15896   70 DREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKTKKDQNSLALSHGELEKQLLQANPILEAFGNAKTVKNDNSSRFG 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRNvkDYKILSNSNQdIIPGI 329
Cdd:cd15896  150 KFIRINFDVNGYIVGANIETYLLEKSRAIRQAKEERTFHIFYYLLTGAGDKLRSELLLENYN--NYRFLSNGNV-TIPGQ 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    330 NDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDR-AEQASFKNDVSA--ICSNLGVDEKDFQTAILRPR 406
Cdd:cd15896  227 QDKDLFTETMEAFRIMGIPEDEQIGMLKVVASVLQLGNMSFKKERhTDQASMPDNTAAqkVCHLMGMNVTDFTRAILSPR 306
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    407 SKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSAT-LNYIGLLDIAGFEIFENNSFEQLCINYTN 485
Cdd:cd15896  307 IKVGRDYVQKAQTQEQAEFAVEALAKATYERMFRWLVMRINKALDKTKRQgASFIGILDIAGFEIFELNSFEQLCINYTN 386
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    486 EKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESKGPPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQN 565
Cdd:cd15896  387 EKLQQLFNHTMFILEQEEYQREGIEWSFIDFGLDLQPCIDLIEKPASPPGILALLDEECWFPKATDKSFVEKVLQEQGTH 466
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    566 SSKFKRSRLKN--GFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpegEKSSSAGVE--ANISNQ 641
Cdd:cd15896  467 PKFFKPKKLKDeaDFCIIHYAGKVDYKADEWLMKNMDPLNDNVATLLNQSTDKFVSELWK---DVDRIVGLDkvSGMSEM 543
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    642 EVKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRI 721
Cdd:cd15896  544 PGAFKTRKGMFRTVGQLYKEQLSKLMATLRNTNPNFVRCIIPNHEKKAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRI 623
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 730092    722 AFQEFFQRYRILYPeNSTTTTFssklkASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd15896  624 VFQEFRQRYEILTP-NAIPKGF-----MDGKQACVLMIKSLELDPNLYRIGQSKVFFR 675
MYSc_Myh15_mammals cd14929
class II myosin heavy chain 15, motor domain; Myosin motor domain of sarcomeric myosin heavy ...
89-779 0e+00

class II myosin heavy chain 15, motor domain; Myosin motor domain of sarcomeric myosin heavy chain 15 in mammals (also called KIAA1000) . MYH15 is a slow-twitch myosin. Myh15 is a ventricular myosin heavy chain. Myh15 is absent in embryonic and fetal muscles and is found in orbital layer of extraocular muscles at birth. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276892 [Multi-domain]  Cd Length: 662  Bit Score: 578.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHnrlsksrldensHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14929    1 ASVLHTLRRRYDHWMIYTYSGLFCVTINPYKWLPVYQKEVMAAYKGKR------------RSEAPPHIFAVANNAFQDML 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNiapvsgsSIVESFEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd14929   69 HNRENQSILFTGESGAGKTVNTKHIIQYFATIAAMIESK-------KKLGALEDQIMQANPVLEAFGNAKTLRNDNSSRF 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGldDSELKNLRLKSRNVKDYKILSNSnqdiIPG 328
Cdd:cd14929  142 GKFIRMHFGARGMLSSADIDIYLLEKSRVIFQQPGERNYHIFYQILSG--KKELRDLLLVSANPSDFHFCSCG----AVA 215
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLS---ALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSD-RAEQ--ASFKNDVSAICSNLGVDEKDFQTAI 402
Cdd:cd14929  216 VESLDDAEELLAteqAMDILGFLPDEKYGCYKLTGAIMHFGNMKFKQKpREEQleADGTENADKAAFLMGINSSELVKGL 295
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    403 LRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCIN 482
Cdd:cd14929  296 IHPRIKVGNEYVTRSQNIEQVTYAVGALSKSIYERMFKWLVARINRVLDAKLSRQFFIGILDITGFEILDYNSLEQLCIN 375
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    483 YTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgpPTGVLPLLDEEAVLPKSTDESFYSKLISTW 562
Cdd:cd14929  376 FTNEKLQQFFNQHMFVLEQEEYRKEGIDWVSIDFGLDLQACIDLIEK---PMGIFSILEEECMFPKATDLTFKTKLFDNH 452
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    563 DQNSSKFKR-----SRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqpegEKSSSAGVEAN 637
Cdd:cd14929  453 FGKSVHFQKpkpdkKKFEAHFELVHYAGVVPYNISGWLEKNKDLLNETVVAVFQKSSNRLLASLF----ENYISTDSAIQ 528
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    638 ISNQEVKKSArtsTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGY 717
Cdd:cd14929  529 FGEKKRKKGA---SFQTVASLHKENLNKLMTNLKSTAPHFVRCINPNVNKIPGVLDPYLVLQQLRCNGVLEGIRICREGF 605
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 730092    718 PNRIAFQEFFQRYRILYPENSTTTTFSSKLKAStkqncEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14929  606 PNRLLYADFKQRYCILNPRTFPKSKFVSSRKAA-----EELLGSLEIDHTQYRFGITKVFFK 662
MYSc_Myh11 cd14921
class II myosin heavy chain 11, motor domain; Myosin motor domain of smooth muscle myosin ...
90-779 0e+00

class II myosin heavy chain 11, motor domain; Myosin motor domain of smooth muscle myosin heavy chain 11 (also called SMMHC, SMHC). The gene product is a subunit of a hexameric protein that consists of two heavy chain subunits and two pairs of non-identical light chain subunits. It functions as a major contractile protein, converting chemical energy into mechanical energy through the hydrolysis of ATP. The gene encoding a human ortholog of rat NUDE1 is transcribed from the reverse strand of this gene, and its 3' end overlaps with that of the latter. Inversion of the MYH11 locus is one of the most frequent chromosomal aberrations found in acute myeloid leukemia. Alternative splicing generates isoforms that are differentially expressed, with ratios changing during muscle cell maturation. Mutations in MYH11 have been described in individuals with thoracic aortic aneurysms leading to acute aortic dissections with patent ductus arteriosus. MYH11 mutations are also thought to contribute to human colorectal cancer and are also associated with Peutz-Jeghers syndrome. The mutations found in human intestinal neoplasia result in unregulated proteins with constitutive motor activity, similar to the mutant myh11 zebrafish. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276885 [Multi-domain]  Cd Length: 673  Bit Score: 575.81  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldeNSHEkLPPHIFAIAEEAYENLLS 169
Cdd:cd14921    2 SVLHNLRERYFSGLIYTYSGLFCVVVNPYKHLPIYSEKIVDMYKGK-----------KRHE-MPPHIYAIADTAYRSMLQ 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNiapvSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd14921   70 DREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGK----KDTSITGELEKQLLQANPILEAFGNAKTVKNDNSSRFG 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRNvkDYKILSNSNQDIiPGI 329
Cdd:cd14921  146 KFIRINFDVTGYIVGANIETYLLEKSRAIRQARDERTFHIFYYLIAGAKEKMRSDLLLEGFN--NYTFLSNGFVPI-PAA 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    330 NDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDR-AEQASFKNDVSA--ICSNLGVDEKDFQTAILRPR 406
Cdd:cd14921  223 QDDEMFQETLEAMSIMGFSEEEQLSILKVVSSVLQLGNIVFKKERnTDQASMPDNTAAqkVCHLMGINVTDFTRSILTPR 302
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    407 SKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSAT-LNYIGLLDIAGFEIFENNSFEQLCINYTN 485
Cdd:cd14921  303 IKVGRDVVQKAQTKEQADFAIEALAKATYERLFRWILTRVNKALDKTHRQgASFLGILDIAGFEIFEVNSFEQLCINYTN 382
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    486 EKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESKGPPTGVLPLLDEEAVLPKSTDESFYSKLISTwDQN 565
Cdd:cd14921  383 EKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPNNPPGVLALLDEECWFPKATDKSFVEKLCTE-QGN 461
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    566 SSKFKRSRL---KNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpEGEKSSSAGVEANISNQE 642
Cdd:cd14921  462 HPKFQKPKQlkdKTEFSIIHYAGKVDYNASAWLTKNMDPLNDNVTSLLNASSDKFVADLWK-DVDRIVGLDQMAKMTESS 540
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    643 VKKSARTS--TFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNR 720
Cdd:cd14921  541 LPSASKTKkgMFRTVGQLYKEQLGKLMTTLRNTTPNFVRCIIPNHEKRSGKLDAFLVLEQLRCNGVLEGIRICRQGFPNR 620
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 730092    721 IAFQEFFQRYRILyPENSTTTTFssklkASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14921  621 IVFQEFRQRYEIL-AANAIPKGF-----MDGKQACILMIKALELDPNLYRIGQSKIFFR 673
MYSc_Myh9 cd14919
class II myosin heavy chain 9, motor domain; Myosin motor domain of non-muscle myosin heavy ...
90-779 0e+00

class II myosin heavy chain 9, motor domain; Myosin motor domain of non-muscle myosin heavy chain 9 (also called NMMHCA, NMHC-II-A, MHA, FTNS, EPSTS, and DFNA17). Myosin is a hexameric protein composed of a pair of myosin heavy chains (MYH) and two pairs of nonidentical light chains. The encoded protein is a myosin IIA heavy chain that contains an IQ domain and a myosin head-like domain which is involved in several important functions, including cytokinesis, cell motility and maintenance of cell shape. Defects in this gene have been associated with non-syndromic sensorineural deafness autosomal dominant type 17, Epstein syndrome, Alport syndrome with macrothrombocytopenia, Sebastian syndrome, Fechtner syndrome and macrothrombocytopenia with progressive sensorineural deafness. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276883 [Multi-domain]  Cd Length: 670  Bit Score: 567.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldeNSHEkLPPHIFAIAEEAYENLLS 169
Cdd:cd14919    2 SVLHNLKERYYSGLIYTYSGLFCVVINPYKNLPIYSEEIVEMYKGK-----------KRHE-MPPHIYAITDTAYRSMMQ 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNiapvsgsSIVESFEMKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd14919   70 DREDQSILCTGESGAGKTENTKKVIQYLAHVASSHKSK-------KDQGELERQLLQANPILEAFGNAKTVKNDNSSRFG 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRNvkDYKILSNSNQdIIPGI 329
Cdd:cd14919  143 KFIRINFDVNGYIVGANIETYLLEKSRAIRQAKEERTFHIFYYLLSGAGEHLKTDLLLEPYN--KYRFLSNGHV-TIPGQ 219
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    330 NDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDR-AEQASFKNDVSA--ICSNLGVDEKDFQTAILRPR 406
Cdd:cd14919  220 QDKDMFQETMEAMRIMGIPEEEQMGLLRVISGVLQLGNIVFKKERnTDQASMPDNTAAqkVSHLLGINVTDFTRGILTPR 299
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    407 SKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSAT-LNYIGLLDIAGFEIFENNSFEQLCINYTN 485
Cdd:cd14919  300 IKVGRDYVQKAQTKEQADFAIEALAKATYERMFRWLVLRINKALDKTKRQgASFIGILDIAGFEIFDLNSFEQLCINYTN 379
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    486 EKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESKGPPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQN 565
Cdd:cd14919  380 EKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIEKPAGPPGILALLDEECWFPKATDKSFVEKVVQEQGTH 459
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    566 SSKFKRSRLKN--GFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpEGEKSSSAGVEANISNQEV 643
Cdd:cd14919  460 PKFQKPKQLKDkaDFCIIHYAGKVDYKADEWLMKNMDPLNDNIATLLHQSSDKFVSELWK-DVDRIIGLDQVAGMSETAL 538
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    644 KKS--ARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRI 721
Cdd:cd14919  539 PGAfkTRKGMFRTVGQLYKEQLAKLMATLRNTNPNFVRCIIPNHEKKAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRV 618
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 730092    722 AFQEFFQRYRILYPeNSTTTTFssklkASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14919  619 VFQEFRQRYEILTP-NSIPKGF-----MDGKQACVLMIKALELDSNLYRIGQSKVFFR 670
MYSc_Myh14_mammals cd14930
class II myosin heavy chain 14 motor domain; Myosin motor domain of non-muscle myosin heavy ...
90-779 0e+00

class II myosin heavy chain 14 motor domain; Myosin motor domain of non-muscle myosin heavy chain 14 (also called FLJ13881, KIAA2034, MHC16, MYH17). Its members include mammals, chickens, and turtles. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Some of the data used for this classification were produced by the CyMoBase team at the Max-Planck-Institute for Biophysical Chemistry. The sequence names are composed of the species abbreviation followed by the protein abbreviation and optional protein classifier and variant designations.


Pssm-ID: 276893 [Multi-domain]  Cd Length: 670  Bit Score: 564.33  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldeNSHEkLPPHIFAIAEEAYENLLS 169
Cdd:cd14930    2 SVLHNLRERYYSGLIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGK-----------KRHE-VPPHVYAVTEGAYRSMLQ 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPvsgsSIVESFEMKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd14930   70 DREDQSILCTGESGAGKTENTKKVIQYLAHVASSPKGRKEP----GVPGELERQLLQANPILEAFGNAKTVKNDNSSRFG 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSrnVKDYKILSNSNQDIiPGi 329
Cdd:cd14930  146 KFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEP--CSHYRFLTNGPSSS-PG- 221
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    330 NDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDR-AEQASFKNDVSA--ICSNLGVDEKDFQTAILRPR 406
Cdd:cd14930  222 QERELFQETLESLRVLGFSHEEITSMLRMVSAVLQFGNIVLKRERnTDQATMPDNTAAqkLCRLLGLGVTDFSRALLTPR 301
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    407 SKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSAT-LNYIGLLDIAGFEIFENNSFEQLCINYTN 485
Cdd:cd14930  302 IKVGRDYVQKAQTKEQADFALEALAKATYERLFRWLVLRLNRALDRSPRQgASFLGILDIAGFEIFQLNSFEQLCINYTN 381
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    486 EKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESKGPPTGVLPLLDEEAVLPKSTDESFYSKlISTWDQN 565
Cdd:cd14930  382 EKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEK-VAQEQGG 460
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    566 SSKFKRSR-LKN--GFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpegEKSSSAGVE--ANISN 640
Cdd:cd14930  461 HPKFQRPRhLRDqaDFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWK---DVEGIVGLEqvSSLGD 537
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    641 QEVKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNR 720
Cdd:cd14930  538 GPPGGRPRRGMFRTVGQLYKESLSRLMATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNR 617
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 730092    721 IAFQEFFQRYRILYPeNSTTTTFssklkASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14930  618 ILFQEFRQRYEILTP-NAIPKGF-----MDGKQACEKMIQALELDPNLYRVGQSKIFFR 670
MYSc_Myh7 cd14917
class II myosin heavy chain 7, motor domain; Myosin motor domain of beta (or slow) type I ...
89-779 2.33e-178

class II myosin heavy chain 7, motor domain; Myosin motor domain of beta (or slow) type I cardiac muscle myosin heavy chain 7 (also called CMH1, MPD1, and CMD1S). Muscle myosin is a hexameric protein containing 2 heavy chain subunits, 2 alkali light chain subunits, and 2 regulatory light chain subunits. It is expressed predominantly in normal human ventrical and in skeletal muscle tissues rich in slow-twitch type I muscle fibers. Changes in the relative abundance of this protein and the alpha (or fast) heavy subunit of cardiac myosin correlate with the contractile velocity of cardiac muscle. Its expression is also altered during thyroid hormone depletion and hemodynamic overloading. Mutations in this gene are associated with familial hypertrophic cardiomyopathy, myosin storage myopathy, dilated cardiomyopathy, and Laing early-onset distal myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276881 [Multi-domain]  Cd Length: 668  Bit Score: 556.25  E-value: 2.33e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldenSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14917    1 PAVLYNLKERYASWMIYTYSGLFCVTVNPYKWLPVYNAEVVAAYRGK------------KRSEAPPHIFSISDNAYQYML 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQY---LASITSGSPSNIAPVSGSsivesFEMKILQSNPILESFGNAQTVRNNNS 245
Cdd:cd14917   69 TDRENQSILITGESGAGKTVNTKRVIQYfavIAAIGDRSKKDQTPGKGT-----LEDQIIQANPALEAFGNAKTVRNDNS 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    246 SRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGlDDSELKNLRLKSRNVKDYKILSNSnQDI 325
Cdd:cd14917  144 SRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSN-KKPELLDMLLITNNPYDYAFISQG-ETT 221
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    326 IPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEF-VSDRAEQA----SFKNDVSAICsnLGVDEKDFQT 400
Cdd:cd14917  222 VASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFkQKQREEQAepdgTEEADKSAYL--MGLNSADLLK 299
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    401 AILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLC 480
Cdd:cd14917  300 GLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYEKMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLC 379
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    481 INYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgpPTGVLPLLDEEAVLPKSTDESFYSKLIS 560
Cdd:cd14917  380 INFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK---PMGIMSILEEECMFPKATDMTFKAKLFD 456
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    561 TWDQNSSKFKRSRLKNG-----FILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqpegekSSSAGVE 635
Cdd:cd14917  457 NHLGKSNNFQKPRNIKGkpeahFSLIHYAGTVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSNLF------ANYAGAD 530
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    636 ANISNQEvKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLARE 715
Cdd:cd14917  531 APIEKGK-GKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRK 609
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 730092    716 GYPNRIAFQEFFQRYRILYPENSTTTTFSSKLKASTKqncefLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14917  610 GFPNRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEK-----LLSSLDIDHNQYKFGHTKVFFK 668
MYSc_Myh16 cd14934
class II myosin heavy chain 16, motor domain; Myosin motor domain of myosin heavy chain 16 ...
90-779 3.77e-177

class II myosin heavy chain 16, motor domain; Myosin motor domain of myosin heavy chain 16 pseudogene (also called MHC20, MYH16, and myh5), encoding a sarcomeric myosin heavy chain expressed in nonhuman primate masticatory muscles, is inactivated in humans. This cd contains Myh16 in mammals. MYH16 has intermediate fibres between that of slow type 1 and fast 2B fibres, but exert more force than any other fibre type examined. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Some of the data used for this classification were produced by the CyMoBase team at the Max-Planck-Institute for Biophysical Chemistry. The sequence names are composed of the species abbreviation followed by the protein abbreviation and optional protein classifier and variant designations.


Pssm-ID: 276896 [Multi-domain]  Cd Length: 659  Bit Score: 552.71  E-value: 3.77e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldenSHEKLPPHIFAIAEEAYENLLS 169
Cdd:cd14934    2 SVLDNLRQRYTNMRIYTYSGLFCVTVNPYKWLPIYGARVANMYKGK------------KRTEMPPHLFSISDNAYHDMLM 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASItsGSPSNIAPVSGSSIvesfEMKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd14934   70 DRENQSMLITGESGAGKTENTKKVIQYFANI--GGTGKQSSDGKGSL----EDQIIQANPVLEAFGNAKTTRNNNSSRFG 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSrNVKDYKILSNSnQDIIPGI 329
Cdd:cd14934  144 KFIRIHFGTTGKLAGADIESYLLEKSRVISQQAAERGYHIFYQILSNKKPELIESLLLVP-NPKEYHWVSQG-VTVVDNM 221
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    330 NDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSD-RAEQASFKNDVSA--ICSNLGVDEKDFQTAILRPR 406
Cdd:cd14934  222 DDGEELQITDVAFDVLGFSAEEKIGVYKLTGGIMHFGNMKFKQKpREEQAEVDTTEVAdkVAHLMGLNSGELQKGITRPR 301
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    407 SKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINYTNE 486
Cdd:cd14934  302 VKVGNEFVQKGQNMEQCNNSIGALGKAVYDKMFKWLVVRINKTLDTKMQRQFFIGVLDIAGFEIFEFNSFEQLCINFTNE 381
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    487 KLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgpPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQNS 566
Cdd:cd14934  382 KLQQFFNHHMFVLEQEEYKREGIEWVFIDFGLDLQACIDLLEK---PMGIFSILEEQCVFPKATDATFKAALYDNHLGKS 458
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    567 SKFKRSRLKNG------FILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPEGEKSSSagveanisn 640
Cdd:cd14934  459 SNFLKPKGGKGkgpeahFELVHYAGTVGYNITGWLEKNKDPLNETVVGLFQKSSLGLLALLFKEEEAPAGS--------- 529
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    641 qevKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNR 720
Cdd:cd14934  530 ---KKQKRGSSFMTVSNFYREQLNKLMTTLHSTAPHFVRCIVPNEFKQSGVVDAHLIMHQLACNGVLEGIRICRKGFPNR 606
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 730092    721 IAFQEFFQRYRILYPeNSTTTTFSSKLKAStkqncEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14934  607 LQYPEFKQRYQVLNP-NVIPQGFVDNKKAS-----ELLLGSIDLDVNEYKIGHTKVFFR 659
MYSc_Myh6 cd14916
class II myosin heavy chain 6, motor domain; Myosin motor domain of alpha (or fast) cardiac ...
89-779 7.40e-172

class II myosin heavy chain 6, motor domain; Myosin motor domain of alpha (or fast) cardiac muscle myosin heavy chain 6. Cardiac muscle myosin is a hexamer consisting of two heavy chain subunits, two light chain subunits, and two regulatory subunits. This gene encodes the alpha heavy chain subunit of cardiac myosin. Mutations in this gene cause familial hypertrophic cardiomyopathy and atrial septal defect. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276880 [Multi-domain]  Cd Length: 670  Bit Score: 538.88  E-value: 7.40e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldenSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14916    1 PAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVVAAYRGK------------KRSEAPPHIFSISDNAYQYML 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSiVESFEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd14916   69 TDRENQSILITGESGAGKTVNTKRVIQYFASIAAIGDRSKKENPNAN-KGTLEDQIIQANPALEAFGNAKTVRNDNSSRF 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGlDDSELKNLRLKSRNVKDYKILSNSnQDIIPG 328
Cdd:cd14916  148 GKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERNYHIFYQILSN-KKPELLDMLLVTNNPYDYAFVSQG-EVSVAS 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVS-DRAEQAS--FKNDVSAICSNLGVDEKDFQTAILRP 405
Cdd:cd14916  226 IDDSEELLATDSAFDVLGFTAEEKAGVYKLTGAIMHYGNMKFKQkQREEQAEpdGTEDADKSAYLMGLNSADLLKGLCHP 305
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    406 RSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINYTN 485
Cdd:cd14916  306 RVKVGNEYVTKGQSVQQVYYSIGALAKSVYEKMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTN 385
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    486 EKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgpPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQN 565
Cdd:cd14916  386 EKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLQACIDLIEK---PMGIMSILEEECMFPKASDMTFKAKLYDNHLGK 462
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    566 SSKFKRSRLKNG-----FILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqpegekSSSAGVEANISN 640
Cdd:cd14916  463 SNNFQKPRNVKGkqeahFSLVHYAGTVDYNILGWLEKNKDPLNETVVGLYQKSSLKLMATLF------STYASADTGDSG 536
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    641 QEVKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNR 720
Cdd:cd14916  537 KGKGGKKKGSSFQTVSALHRENLNKLMTNLKTTHPHFVRCIIPNERKAPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNR 616
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 730092    721 IAFQEFFQRYRILYPENSTTTTFSSKLKASTKqncefLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14916  617 ILYGDFRQRYRILNPAAIPEGQFIDSRKGAEK-----LLGSLDIDHNQYKFGHTKVFFK 670
MYSc_Myh1_mammals cd14910
class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle ...
89-779 1.56e-169

class II myosin heavy chain 1, motor domain; Myosin motor domain of type IIx skeletal muscle myosin heavy chain 1 (also called MYHSA1, MYHa, MyHC-2X/D, MGC133384) in mammals. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276875 [Multi-domain]  Cd Length: 671  Bit Score: 532.77  E-value: 1.56e-169
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldenSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14910    1 PAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVVTAYRGK------------KRQEAPPHIFSISDNAYQFML 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd14910   69 TDRENQSILITGESGAGKTVNTKRVIQYFATIAVTGEKKKEEATSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRF 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGlDDSELKNLRLKSRNVKDYKILSNSnQDIIPG 328
Cdd:cd14910  149 GKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQIMSN-KKPDLIEMLLITTNPYDYAFVSQG-EITVPS 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKN-----DVSAICSNLgvDEKDFQTAIL 403
Cdd:cd14910  227 IDDQEELMATDSAIEILGFTSDERVSIYKLTGAVMHYGNMKFKQKQREEQAEPDgtevaDKAAYLQNL--NSADLLKALC 304
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    404 RPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINY 483
Cdd:cd14910  305 YPRVKVGNEYVTKGQTVQQVYNAVGALAKAVYDKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINF 384
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    484 TNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgpPTGVLPLLDEEAVLPKSTDESFYSKLISTWD 563
Cdd:cd14910  385 TNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEK---PMGIFSILEEECMFPKATDTSFKNKLYEQHL 461
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    564 QNSSKFKRSRLKNG-----FILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqpegekSSSAGVEANI 638
Cdd:cd14910  462 GKSNNFQKPKPAKGkveahFSLIHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSSMKTLALLF------SGAAAAEAEE 535
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    639 SNQEVKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYP 718
Cdd:cd14910  536 GGGKKGGKKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFP 615
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092    719 NRIAFQEFFQRYRILYPENSTTTTFSSKLKASTKqncefLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14910  616 SRILYADFKQRYKVLNASAIPEGQFIDSKKASEK-----LLGSIDIDHTQYKFGHTKVFFK 671
MYSc_Myo6 cd01382
class VI myosin, motor domain; Myosin VI is a monomeric myosin, which moves towards the ...
89-779 1.08e-167

class VI myosin, motor domain; Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins which moves towards the plus-end of actin filaments. It is thought that myosin VI, unlike plus-end directed myosins, does not use a pure lever arm mechanism, but instead steps with a mechanism analogous to the kinesin neck-linker uncoupling model. It has been implicated in a myriad of functions including: the transport of cytoplasmic organelles, maintenance of normal Golgi morphology, endocytosis, secretion, cell migration, border cell migration during development, and in cancer metastasis playing roles in deafness and retinal development among others. While how this is accomplished is largely unknown there are several interacting proteins that have been identified such as disabled homolog 2 (DAB2), GIPC1, synapse-associated protein 97 (SAP97; also known as DLG1) and optineurin, which have been found to target myosin VI to different cellular compartments. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276833  Cd Length: 649  Bit Score: 526.82  E-value: 1.08e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNL-NLYSEDHINLYHNKhnrlsksrldenSHEKLPPHIFAIAEEAYENL 167
Cdd:cd01382    1 ATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIpKLYSSETIKSYQGK------------SLGTLPPHVFAIADKAYRDM 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    168 LSEGKDQSILVTGESGAGKTENTKKILQYLASitsgspsniapvSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSR 247
Cdd:cd01382   69 KVLKQSQSIIVSGESGAGKTESTKYILRYLTE------------SWGSGAGPIEQRILEANPLLEAFGNAKTVRNNNSSR 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    248 FGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDsELKNLRLKsrnvkdykilsnsnqdiIP 327
Cdd:cd01382  137 FGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQSKEERNYHIFYRLCAGAPE-DLREKLLK-----------------DP 198
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    328 GINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEF---VSDRAEQASFKNDVS---AICSNL-GVDEKDFQT 400
Cdd:cd01382  199 LLDDVGDFIRMDKAMKKIGLSDEEKLDIFRVVAAVLHLGNIEFeenGSDSGGGCNVKPKSEqslEYAAELlGLDQDELRV 278
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    401 A----ILRPRSKAGKEWVSQ-SKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATlNYIGLLDIAGFEIFENNS 475
Cdd:cd01382  279 SlttrVMQTTRGGAKGTVIKvPLKVEEANNARDALAKAIYSKLFDHIVNRINQCIPFETSS-YFIGVLDIAGFEYFEVNS 357
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    476 FEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDESFY 555
Cdd:cd01382  358 FEQFCINYCNEKLQQFFNERILKEEQELYEKEGLGVKEVEY-VDNQDCIDLIEAK--LVGILDLLDEESKLPKPSDQHFT 434
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    556 SKLISTWDQN-------SSKFKRSR-LKN--GFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPE 625
Cdd:cd01382  435 SAVHQKHKNHfrlsiprKSKLKIHRnLRDdeGFLIRHFAGAVCYETAQFIEKNNDALHASLESLICESKDKFIRSLFESS 514
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    626 GEKSSSagveanisnqeVKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNG 705
Cdd:cd01382  515 TNNNKD-----------SKQKAGKLSFISVGNKFKTQLNLLMDKLRSTGTSFIRCIKPNLKMTSHHFEGAQILSQLQCSG 583
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 730092    706 VLEGIRLAREGYPNRIAFQEFFQRYRILYPENsttttfSSKLKASTkqNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd01382  584 MVSVLDLMQGGFPSRTSFHDLYNMYKKYLPPK------LARLDPRL--FCKALFKALGLNENDFKFGLTKVFFR 649
MYSc_Myh4 cd14915
class II myosin heavy chain 4, motor domain; Myosin motor domain of skeletal muscle myosin ...
89-779 1.27e-167

class II myosin heavy chain 4, motor domain; Myosin motor domain of skeletal muscle myosin heavy chain 4 (also called MYH2B, MyHC-2B, MyHC-IIb). Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276879 [Multi-domain]  Cd Length: 671  Bit Score: 527.38  E-value: 1.27e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldenSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14915    1 PAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVTAYRGK------------KRQEAPPHIFSISDNAYQFML 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd14915   69 TDRENQSILITGESGAGKTVNTKRVIQYFATIAVTGEKKKEEAASGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRF 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGlDDSELKNLRLKSRNVKDYKILSNSnQDIIPG 328
Cdd:cd14915  149 GKFIRIHFGATGKLASADIETYLLEKSRVTFQLKAERSYHIFYQIMSN-KKPELIEMLLITTNPYDFAFVSQG-EITVPS 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVS-DRAEQASFKN----DVSAICSNLgvDEKDFQTAIL 403
Cdd:cd14915  227 IDDQEELMATDSAVDILGFSADEKVAIYKLTGAVMHYGNMKFKQkQREEQAEPDGtevaDKAAYLTSL--NSADLLKALC 304
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    404 RPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINY 483
Cdd:cd14915  305 YPRVKVGNEYVTKGQTVQQVYNSVGALAKAIYEKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINF 384
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    484 TNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgpPTGVLPLLDEEAVLPKSTDESFYSKLISTWD 563
Cdd:cd14915  385 TNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEK---PMGIFSILEEECMFPKATDTSFKNKLYEQHL 461
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    564 QNSSKFKRSRLKNG-----FILKHYAGDVEYTVEGWLSKNKDPLNDNllsllsssqndiISKLFQPEGEKS----SSAGV 634
Cdd:cd14915  462 GKSNNFQKPKPAKGkaeahFSLVHYAGTVDYNIAGWLDKNKDPLNET------------VVGLYQKSGMKTlaflFSGGQ 529
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    635 EANISNQEVKKSART--STFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRL 712
Cdd:cd14915  530 TAEAEGGGGKKGGKKkgSSFQTVSALFRENLNKLMTNLRSTHPHFVRCLIPNETKTPGAMEHELVLHQLRCNGVLEGIRI 609
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 730092    713 AREGYPNRIAFQEFFQRYRILYPENSTTTTFSSKLKASTKqncefLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14915  610 CRKGFPSRILYADFKQRYKVLNASAIPEGQFIDSKKASEK-----LLGSIDIDHTQYKFGHTKVFFK 671
MYSc_Myh2_mammals cd14912
class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle ...
89-779 2.54e-167

class II myosin heavy chain 2, motor domain; Myosin motor domain of type IIa skeletal muscle myosin heavy chain 2 (also called MYH2A, MYHSA2, MyHC-IIa, MYHas8, MyHC-2A) in mammals. Mutations in this gene results in inclusion body myopathy-3 and familial congenital myopathy. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276877 [Multi-domain]  Cd Length: 673  Bit Score: 526.61  E-value: 2.54e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldenSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14912    1 PAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVTAYRGK------------KRQEAPPHIFSISDNAYQFML 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd14912   69 TDRENQSILITGESGAGKTVNTKRVIQYFATIAVTGEKKKEEITSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRF 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGlDDSELKNLRLKSRNVKDYKILSNSNQDiIPG 328
Cdd:cd14912  149 GKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQITSN-KKPELIEMLLITTNPYDYPFVSQGEIS-VAS 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKN-----DVSAICSNLgvDEKDFQTAIL 403
Cdd:cd14912  227 IDDQEELMATDSAIDILGFTNEEKVSIYKLTGAVMHYGNLKFKQKQREEQAEPDgtevaDKAAYLQSL--NSADLLKALC 304
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    404 RPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINY 483
Cdd:cd14912  305 YPRVKVGNEYVTKGQTVEQVTNAVGALAKAVYEKMFLWMVARINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINF 384
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    484 TNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgpPTGVLPLLDEEAVLPKSTDESFYSKLISTWD 563
Cdd:cd14912  385 TNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLAACIELIEK---PMGIFSILEEECMFPKATDTSFKNKLYEQHL 461
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    564 QNSSKFKRSRLKNG-----FILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqpegekSSSAGVEANI 638
Cdd:cd14912  462 GKSANFQKPKVVKGkaeahFSLIHYAGVVDYNITGWLDKNKDPLNETVVGLYQKSAMKTLAYLF------SGAQTAEGAS 535
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    639 SNQEVKKSART--STFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREG 716
Cdd:cd14912  536 AGGGAKKGGKKkgSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKG 615
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 730092    717 YPNRIAFQEFFQRYRILYPENSTTTTFSSKLKASTKqncefLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14912  616 FPSRILYADFKQRYKVLNASAIPEGQFIDSKKASEK-----LLASIDIDHTQYKFGHTKVFFK 673
MYSc_Myh13 cd14923
class II myosin heavy chain 13, motor domain; Myosin motor domain of skeletal muscle myosin ...
89-779 3.02e-167

class II myosin heavy chain 13, motor domain; Myosin motor domain of skeletal muscle myosin heavy chain 13 (also called MyHC-eo) in mammals, chicken, and green anole. Myh13 is a myosin whose expression is restricted primarily to the extrinsic eye muscles which are specialized for function in eye movement. Class II myosins, also called conventional myosins, are the myosin type responsible for producing muscle contraction in muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276887 [Multi-domain]  Cd Length: 671  Bit Score: 526.56  E-value: 3.02e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldenSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14923    1 PAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVAAYRGK------------KRQEAPPHIFSISDNAYQFML 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNiAPVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd14923   69 TDRDNQSILITGESGAGKTVNTKRVIQYFATIAVTGDKK-KEQQPGKMQGTLEDQIIQANPLLEAFGNAKTVRNDNSSRF 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGlDDSELKNLRLKSRNVKDYKILSNSnQDIIPG 328
Cdd:cd14923  148 GKFIRIHFGATGKLASADIETYLLEKSRVTFQLSSERSYHIFYQIMSN-KKPELIDLLLISTNPFDFPFVSQG-EVTVAS 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVS-DRAEQAsfKNDVSAICSN----LGVDEKDFQTAIL 403
Cdd:cd14923  226 IDDSEELLATDNAIDILGFSSEEKVGIYKLTGAVMHYGNMKFKQkQREEQA--EPDGTEVADKagylMGLNSAEMLKGLC 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    404 RPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINY 483
Cdd:cd14923  304 CPRVKVGNEYVTKGQNVQQVTNSVGALAKAVYEKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINF 383
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    484 TNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgpPTGVLPLLDEEAVLPKSTDESFYSKLISTWD 563
Cdd:cd14923  384 TNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEK---PMGIFSILEEECMFPKATDTSFKNKLYDQHL 460
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    564 QNSSKFKRSRLKNG-----FILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqpegekSSSAGVEANI 638
Cdd:cd14923  461 GKSNNFQKPKPAKGkaeahFSLVHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSSLKLLSFLF------SNYAGAEAGD 534
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    639 SNQEVKKSART-STFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGY 717
Cdd:cd14923  535 SGGSKKGGKKKgSSFQTVSAVFRENLNKLMTNLRSTHPHFVRCLIPNETKTPGVMDHYLVMHQLRCNGVLEGIRICRKGF 614
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 730092    718 PNRIAFQEFFQRYRILYPENSTTTTFSSKLKASTKqncefLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14923  615 PSRILYADFKQRYRILNASAIPEGQFIDSKNASEK-----LLNSIDVDREQYRFGHTKVFFK 671
MYSc_Myh8 cd14918
class II myosin heavy chain 8, motor domain; Myosin motor domain of perinatal skeletal muscle ...
89-779 1.08e-166

class II myosin heavy chain 8, motor domain; Myosin motor domain of perinatal skeletal muscle myosin heavy chain 8 (also called MyHC-peri, MyHC-pn). Myosin is a hexameric protein composed of a pair of myosin heavy chains (MYH) and two pairs of nonidentical light chains. A mutation in this gene results in trismus-pseudocamptodactyly syndrome. Class II myosins, also called conventional myosins, are the myosin type responsible for producing actomyosin contraction in metazoan muscle and non-muscle cells. Myosin II contains two heavy chains made up of the head (N-terminal) and tail (C-terminal) domains with a coiled-coil morphology that holds the two heavy chains together. The intermediate neck domain is the region creating the angle between the head and tail. It also contains 4 light chains which bind the heavy chains in the "neck" region between the head and tail. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. Class-II myosins are regulated by phosphorylation of the myosin light chain or by binding of Ca2+. A cyclical interaction between myosin and actin provides the driving force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276882 [Multi-domain]  Cd Length: 668  Bit Score: 525.07  E-value: 1.08e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldenSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14918    1 PGVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVAAYRGK------------KRQEAPPHIFSISDNAYQFML 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNiaPVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd14918   69 TDRENQSILITGESGAGKTVNTKRVIQYFATIAVTGEKK--KEESGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRF 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGlDDSELKNLRLKSRNVKDYKILSNSnQDIIPG 328
Cdd:cd14918  147 GKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQITSN-KKPDLIEMLLITTNPYDYAFVSQG-EITVPS 224
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKN-----DVSAICSNLgvDEKDFQTAIL 403
Cdd:cd14918  225 IDDQEELMATDSAIDILGFTPEEKVSIYKLTGAVMHYGNMKFKQKQREEQAEPDgtevaDKAAYLQSL--NSADLLKALC 302
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    404 RPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINY 483
Cdd:cd14918  303 YPRVKVGNEYVTKGQTVQQVYNAVGALAKAVYEKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINF 382
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    484 TNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgpPTGVLPLLDEEAVLPKSTDESFYSKLISTWD 563
Cdd:cd14918  383 TNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLAACIELIEK---PLGIFSILEEECMFPKATDTSFKNKLYDQHL 459
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    564 QNSSKFKRSRLKNG-----FILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqpegekSSSAGVEANI 638
Cdd:cd14918  460 GKSANFQKPKVVKGkaeahFSLIHYAGTVDYNITGWLDKNKDPLNDTVVGLYQKSAMKTLASLF------STYASAEADS 533
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    639 SNQEVKKSaRTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYP 718
Cdd:cd14918  534 GAKKGAKK-KGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFP 612
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092    719 NRIAFQEFFQRYRILYPENSTTTTFSSKLKASTKqncefLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14918  613 SRILYGDFKQRYKVLNASAIPEGQFIDSKKASEK-----LLASIDIDHTQYKFGHTKVFFK 668
MYSc_Myo31 cd14892
class XXXI myosin, motor domain; Class XXXI myosins have a very long neck region consisting of ...
95-779 1.74e-166

class XXXI myosin, motor domain; Class XXXI myosins have a very long neck region consisting of 17 IQ motifs and 2 tandem ANK repeats that are separated by a PH domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276857 [Multi-domain]  Cd Length: 656  Bit Score: 523.94  E-value: 1.74e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     95 LEKRYDCDLIYTYSGLFLVAINPYHNLNLysedhinLYhnKHNRLSKSRLDENSHEKLPPHIFAIAEEAYENLLSEGK-- 172
Cdd:cd14892    7 LRRRYERDAIYTFTADILISINPYKSIPL-------LY--DVPGFDSQRKEEATASSPPPHVFSIAERAYRAMKGVGKgq 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    173 --DQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRFGK 250
Cdd:cd14892   78 gtPQSIVVSGESGAGKTEASKYIMKYLATASKLAKGASTSKGAANAHESIEECVLLSNLILEAFGNAKTIRNDNSSRFGK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    251 FIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDdsELKNLRLKSRNVKDYKILSNSNQDIIPGIN 330
Cdd:cd14892  158 YIQIHYNSDGRIAGASTDHFLLEKSRLVGPDANERNYHIFYQLLAGLD--ANENAALELTPAESFLFLNQGNCVEVDGVD 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    331 DVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVS-----DRAEQASFKNDVSAICSNLGVDEKDFQTAILRP 405
Cdd:cd14892  236 DATEFKQLRDAMEQLGFDAEFQRPIFEVLAAVLHLGNVRFEEnaddeDVFAQSADGVNVAKAAGLLGVDAAELMFKLVTQ 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    406 RSKAGKEWVSQSKNS-QQAKFILNALSRNLYERLFGYIVDMINK------NLDHGSATLN----YIGLLDIAGFEIFENN 474
Cdd:cd14892  316 TTSTARGSVLEIKLTaREAKNALDALCKYLYGELFDWLISRINAchkqqtSGVTGGAASPtfspFIGILDIFGFEIMPTN 395
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    475 SFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIEskGPPTGVLPLLDEEAVLP-KSTDES 553
Cdd:cd14892  396 SFEQLCINFTNEMLQQQFNKHVFVLEQEVYASEGIDVSAIEF-QDNQDCLDLIQ--KKPLGLLPLLEEQMLLKrKTTDKQ 472
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    554 FYSKLISTWDQNSSKFKRSRLKNG-FILKHYAGDVEYTVEGWLSKNKDPLndnllsllsssQNDIISKLfqpegeksssa 632
Cdd:cd14892  473 LLTIYHQTHLDKHPHYAKPRFECDeFVLRHYAGDVTYDVHGFLAKNNDNL-----------HDDLRDLL----------- 530
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    633 gveanisnqevkksartstfkTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRL 712
Cdd:cd14892  531 ---------------------RSSSKFRTQLAELMEVLWSTTPSYIKCIKPNNLKFPGGFSCELVRDQLIYSGVLEVVRI 589
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 730092    713 AREGYPNRIAFQEFFQRYRILyPENS--TTTTFSSKLKASTKQNCEFLLTSlQLDTKVYKIGNTKLFFK 779
Cdd:cd14892  590 RREGFPIRRQFEEFYEKFWPL-ARNKagVAASPDACDATTARKKCEEIVAR-ALERENFQLGRTKVFLR 656
MYSc_Myo4 cd14872
class IV myosin, motor domain; These myosins all possess a WW domain either N-terminal or ...
89-779 4.91e-165

class IV myosin, motor domain; These myosins all possess a WW domain either N-terminal or C-terminal to their motor domain and a tail with a MyTH4 domain followed by a SH3 domain in some instances. The monomeric Acanthamoebas were the first identified members of this group and have been joined by Stramenopiles. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276839  Cd Length: 644  Bit Score: 519.33  E-value: 4.91e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHNRlsksrldensheKLPPHIFAIAEEAYENLL 168
Cdd:cd14872    1 AMIVHNLRKRFKNDQIYTNVGTILISVNPFKRLPLYTPTVMDQYMHKGPK------------EMPPHTYNIADDAYRAMI 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASItSGSPSNIapvsgssivesfEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd14872   69 VDAMNQSILISGESGAGKTEATKQCLSFFAEV-AGSTNGV------------EQRVLLANPILEAFGNAKTLRNNNSSRF 135
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSrnvkDYKILSNSNQDIIPG 328
Cdd:cd14872  136 GKWVEIHFDNRGRICGASTENYLLEKSRVVYQIKGERNFHIFYQLLASPDPASRGGWGSSA----AYGYLSLSGCIEVEG 211
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFV-----SDRAEQASFKNDVSAICSN-LGVDEKDFQTAI 402
Cdd:cd14872  212 VDDVADFEEVVLAMEQLGFDDADINNVMSLIAAILKLGNIEFAsgggkSLVSGSTVANRDVLKEVATlLGVDAATLEEAL 291
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    403 L-RPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLN-YIGLLDIAGFEIFENNSFEQLC 480
Cdd:cd14872  292 TsRLMEIKGCDPTRIPLTPAQATDACDALAKAAYSRLFDWLVKKINESMRPQKGAKTtFIGVLDIFGFEIFEKNSFEQLC 371
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    481 INYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKGPptGVLPLLDEEAVLPKSTDESFYSKL-- 558
Cdd:cd14872  372 INFTNEKLQQHFNQYTFKLEEALYQSEGVKFEHIDF-IDNQPVLDLIEKKQP--GLMLALDDQVKIPKGSDATFMIAAnq 448
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    559 ----ISTWDQNSSkfKRSRLKngFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPegeksssagv 634
Cdd:cd14872  449 thaaKSTFVYAEV--RTSRTE--FIVKHYAGDVTYDITGFLEKNKDTLQKDLYVLLSSSKNKLIAVLFPP---------- 514
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    635 eanisnqevkKSARTSTFKTT-SSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLA 713
Cdd:cd14872  515 ----------SEGDQKTSKVTlGGQFRKQLSALMTALNATEPHYIRCVKPNQEKRARLFDGFMSLEQLRYAGVFEAVKIR 584
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 730092    714 REGYPNRIAFQEFFQRYRILypenstTTTFSSKLKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14872  585 KTGYPFRYSHERFLKRYRFL------VKTIAKRVGPDDRQRCDLLLKSLKQDFSKVQVGKTRVLYR 644
MYSc_Myo40 cd14901
class XL myosin, motor domain; The class XL myosins are comprised of Stramenopiles. Not much ...
89-777 1.52e-163

class XL myosin, motor domain; The class XL myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276866 [Multi-domain]  Cd Length: 655  Bit Score: 515.88  E-value: 1.52e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHNRlsksrlDENSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14901    1 PSILHVLRRRFAHGLIYTSTGAILVAINPFRRLPLYDDETKEAYYEHGER------RAAGERKLPPHVYAVADKAFRAML 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 S----EGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSIVEsfemKILQSNPILESFGNAQTVRNNN 244
Cdd:cd14901   75 FasrgQKCDQSILVSGESGAGKTETTKIIMNYLASVSSATTHGQNATERENVRD----RVLESNPILEAFGNARTNRNNN 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    245 SSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKsrNVKDYKILsNSNQ- 323
Cdd:cd14901  151 SSRFGKFIRLGFASSGSLLGASISTYLLERVRLVSQAKGERNYHIFYELLRGASSDELHALGLT--HVEEYKYL-NSSQc 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    324 -DIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKN----DVSAICSNLGVDEKDF 398
Cdd:cd14901  228 yDRRDGVDDSVQYAKTRHAMTTIGMSPDEQISVLQLVAAVLHLGNLCFVKKDGEGGTFSMsslaNVRAACDLLGLDMDVL 307
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    399 QTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNY--IGLLDIAGFEIFENNSF 476
Cdd:cd14901  308 EKTLCTREIRAGGEYITMPLSVEQALLTRDVVAKTLYAQLFDWLVDRINESIAYSESTGASrfIGIVDIFGFEIFATNSL 387
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    477 EQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDlQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDESFYS 556
Cdd:cd14901  388 EQLCINFANEKLQQLFGKFVFEMEQDEYVAEAIPWTFVEYPNN-DACVAMFEAR--PTGLFSLLDEQCLLPRGNDEKLAN 464
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    557 KLISTWDQNSSkFKRSRLKNG---FILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISklfqpegeksssag 633
Cdd:cd14901  465 KYYDLLAKHAS-FSVSKLQQGkrqFVIHHYAGAVCYATDGFCDKNKDHVHSEALALLRTSSNAFLS-------------- 529
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    634 veanisnqevkksartstfKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLA 713
Cdd:cd14901  530 -------------------STVVAKFKVQLSSLLEVLNATEPHFIRCIKPNDVLSPSEFDAKRVLEQLRCSGVLEAVKIS 590
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 730092    714 REGYPNRIAFQEFFQRYRILYPENSTTTTFSSKLKASTKQNCEFLLTSLQlDTKVYKIGNTKLF 777
Cdd:cd14901  591 RSGYPVRFPHDAFVHTYSCLAPDGASDTWKVNELAERLMSQLQHSELNIE-HLPPFQVGKTKVF 653
MYSc_Myo29 cd14890
class XXIX myosin, motor domain; Class XXIX myosins are comprised of Stramenopiles and have ...
90-779 2.66e-162

class XXIX myosin, motor domain; Class XXIX myosins are comprised of Stramenopiles and have very long tail domains consisting of three IQ motifs, short coiled-coil regions, up to 18 CBS domains, a PB1 domain, and a carboxy-terminal transmembrane domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276855 [Multi-domain]  Cd Length: 662  Bit Score: 512.78  E-value: 2.66e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNL-NLYSEDHINLYHNKhnrlsksRLDEnshekLPPHIFAIAEEAYENLL 168
Cdd:cd14890    2 SLLHTLRLRYERDEIYTYVGPILISINPYKSIpDLYSEERMLLYHGT-------TAGE-----LPPHVFAIADHAYTQLI 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEG----KDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVS------GSSIVESFEMKILQSNPILESFGNAQ 238
Cdd:cd14890   70 QSGvldpSNQSIIISGESGAGKTEATKIIMQYLARITSGFAQGASGEGeaaseaIEQTLGSLEDRVLSSNPLLESFGNAK 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    239 TVRNNNSSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRNVKDYkIL 318
Cdd:cd14890  150 TLRNDNSSRFGKFIEIQFDHHGKIVGAEISNFLLEKTRIVTQNDGERNYHIFYQLLAGADEALRERLKLQTPVEYFY-LR 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    319 SNSNQdiIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEF----VSDRAEQASFKNDVSAICSNLGVD 394
Cdd:cd14890  229 GECSS--IPSCDDAKAFAETIRCLSTIGISEENQDAVFGLLAAVLHLGNVDFesenDTTVLEDATTLQSLKLAAELLGVN 306
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    395 EKDFQTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENN 474
Cdd:cd14890  307 EDALEKALLTRQLFVGGKTIVQPQNVEQARDKRDALAKALYSSLFLWLVSELNRTISSPDDKWGFIGVLDIYGFEKFEWN 386
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    475 SFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESK--GPPtGVLPLLDEEAVLPKS-TD 551
Cdd:cd14890  387 TFEQLCINYANEKLQRHFNQHMFEVEQVEYSNEGIDWQYITF-NDNQACLELIEGKvnGKP-GIFITLDDCWRFKGEeAN 464
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    552 ESFYSKLISTWDQNSSKFKRSRLKNG--------------FILKHYAGDVEYTVEGWLSKNKDPLNDNLLsllsssqnDI 617
Cdd:cd14890  465 KKFVSQLHASFGRKSGSGGTRRGSSQhphfvhpkfdadkqFGIKHYAGDVIYDASGFNEKNNETLNAEMK--------EL 536
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    618 IsklfqpegeksssagveanisnqevKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLI 697
Cdd:cd14890  537 I-------------------------KQSRRSIREVSVGAQFRTQLQELMAKISLTNPRYVRCIKPNETKAPGKFDGLDC 591
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    698 LDQLRCNGVLEGIRLAREGYPNRIAFQEFFQRYRILYPENSTTT----TFSSKLKASTKQnceflltslqldtkvYKIGN 773
Cdd:cd14890  592 LRQLKYSGMMEAIQIRQQGFALREEHDSFFYDFQVLLPTAENIEqlvaVLSKMLGLGKAD---------------WQIGS 656

                 ....*.
gi 730092    774 TKLFFK 779
Cdd:cd14890  657 SKIFLK 662
MYSc_Myo42 cd14903
class XLII myosin, motor domain; The class XLII myosins are comprised of Stramenopiles. Not ...
89-779 2.61e-161

class XLII myosin, motor domain; The class XLII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276868 [Multi-domain]  Cd Length: 658  Bit Score: 509.70  E-value: 2.61e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNL-NLYSEDhinlyhnKHNRLSKSRLDEnshekLPPHIFAIAEEAYENL 167
Cdd:cd14903    1 AAILYNVKKRFLRKLPYTYTGDICIAVNPYQWLpELYTEE-------QHSKYLNKPKEE-----LPPHVYATSVAAYNHM 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    168 LSEGKDQSILVTGESGAGKTENTKKILQYLASITSGspsniapVSGSSIvesfeMKILQSNPILESFGNAQTVRNNNSSR 247
Cdd:cd14903   69 KRSGRNQSILVSGESGAGKTETTKILMNHLATIAGG-------LNDSTI-----KKIIEVNPLLESFGNAKTVRNDNSSR 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    248 FGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKsrnvKDYKILSNSNQDIIP 327
Cdd:cd14903  137 FGKFTQLQFDKNGTLVGAKCRTYLLEKTRVISHERPERNYHIFYQLLASPDVEERLFLDSA----NECAYTGANKTIKIE 212
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    328 GINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAE---QASFKNDVSAICSN--LGVDEKDFQTAI 402
Cdd:cd14903  213 GMSDRKHFARTKEALSLIGVSEEKQEVLFEVLAGILHLGQLQIQSKPNDdekSAIAPGDQGAVYATklLGLSPEALEKAL 292
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    403 LRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCIN 482
Cdd:cd14903  293 CSRTMRAAGDVYTVPLKKDQAEDCRDALAKAIYSNVFDWLVATINASLGNDAKMANHIGVLDIFGFEHFKHNSFEQFCIN 372
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    483 YTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGkDLQLTIDLIESKgppTGVLPLLDEEAVLPKSTDESFYSKLISTW 562
Cdd:cd14903  373 YANEKLQQKFTQDVFKTVQIEYEEEGIRWAHIDFA-DNQDVLAVIEDR---LGIISLLNDEVMRPKGNEESFVSKLSSIH 448
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    563 --DQNSSKFKRSRlKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPEGEKSSSAGVEANISN 640
Cdd:cd14903  449 kdEQDVIEFPRTS-RTQFTIKHYAGPVTYESLGFLEKHKDALLPDLSDLMRGSSKPFLRMLFKEKVESPAAASTSLARGA 527
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    641 QevKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNR 720
Cdd:cd14903  528 R--RRRGGALTTTTVGTQFKDSLNELMTTIRSTNVHYVRCIKPNSIKSPTELDHLMVVSQLRCAGVIEAIRISRAAYPNR 605
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    721 IAFQEFFQRYRILYPENSTTTTFssklkasTKQNCEFLLTSLQLDT-KVYKIGNTKLFFK 779
Cdd:cd14903  606 LLHEEFLDKFWLFLPEGRNTDVP-------VAERCEALMKKLKLESpEQYQMGLTRIYFQ 658
MYSc_Myo27 cd14888
class XXVII myosin, motor domain; Not much is known about this myosin class. The catalytic ...
89-736 2.90e-160

class XXVII myosin, motor domain; Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276853 [Multi-domain]  Cd Length: 667  Bit Score: 507.31  E-value: 2.90e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNL-NLYSEDHINlyhnKHNRLSKSRldensheklPPHIFAIAEEAYENL 167
Cdd:cd14888    1 ASILHSLNLRFDIDEIYTFTGPILIAVNPFKTIpGLYSDEMLL----KFIQPSISK---------SPHVFSTASSAYQGM 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    168 LSEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVsgssivesfEMKILQSNPILESFGNAQTVRNNNSSR 247
Cdd:cd14888   68 CNNKKSQTILISGESGAGKTESTKYVMKFLACAGSEDIKKRSLV---------EAQVLESNPLLEAFGNARTLRNDNSSR 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    248 FGKFIKIEFNE---------HGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRNVKD---- 314
Cdd:cd14888  139 FGKFIELQFSKlkskrmsgdRGRLCGAKIQTYLLEKVRVCDQQEGERNYHIFYQLCAAAREAKNTGLSYEENDEKLakga 218
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    315 -----------------YKILSNSNQDIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAE- 376
Cdd:cd14888  219 dakpisidmssfephlkFRYLTKSSCHELPDVDDLEEFESTLYAMQTVGISPEEQNQIFSIVAAILYLGNILFENNEACs 298
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    377 -----QASFKNDVSAICSNLGVDEKDFQTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLD 451
Cdd:cd14888  299 egavvSASCTDDLEKVASLLGVDAEDLLNALCYRTIKTAHEFYTKPLRVDEAEDVRDALARALYSCLFDKVVERTNESIG 378
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    452 HGSATLN-YIGLLDIAGFEIFENNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESK 530
Cdd:cd14888  379 YSKDNSLlFCGVLDIFGFECFQLNSFEQLCINFTNERLQQFFNNFVFKCEEKLYIEEGISWNPLDF-PDNQDCVDLLQEK 457
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    531 gpPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQNsSKFKRSRLK-NGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSL 609
Cdd:cd14888  458 --PLGIFCMLDEECFVPGGKDQGLCNKLCQKHKGH-KRFDVVKTDpNSFVIVHFAGPVKYCSDGFLEKNKDQLSVDAQEV 534
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    610 LSSSQNDIISKLFqpegEKSSSAGVEaniSNQEVKKsartstFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKV 689
Cdd:cd14888  535 IKNSKNPFISNLF----SAYLRRGTD---GNTKKKK------FVTVSSEFRNQLDVLMETIDKTEPHFIRCIKPNSQNVP 601
                        650       660       670       680
                 ....*....|....*....|....*....|....*....|....*..
gi 730092    690 KTFNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQEFFQRYRILYPE 736
Cdd:cd14888  602 DLFDRISVNEQLKYGGVLQAVQVSRAGYPVRLSHAEFYNDYRILLNG 648
MYSc_Myo10 cd14873
class X myosin, motor domain; Myosin X is an unconventional myosin motor that functions as a ...
90-779 1.08e-157

class X myosin, motor domain; Myosin X is an unconventional myosin motor that functions as a monomer. In mammalian cells, the motor is found to localize to filopodia. Myosin X walks towards the barbed ends of filaments and is thought to walk on bundles of actin, rather than single filaments, a unique behavior. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to the head domain are a variable number of IQ domains, 2 PH domains, a MyTH4 domain, and a FERM domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276840 [Multi-domain]  Cd Length: 651  Bit Score: 499.71  E-value: 1.08e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLN-LYSEDHINLYHNKHnrlsksrLDEnshekLPPHIFAIAEEAYENLL 168
Cdd:cd14873    2 SIMYNLFQRYKRNQIYTYIGSILASVNPYQPIAgLYEPATMEQYSRRH-------LGE-----LPPHIFAIANECYRCLW 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSgspsNIAPVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd14873   70 KRHDNQCILISGESGAGKTESTKLILKFLSVISQ----QSLELSLKEKTSCVEQAILESSPIMEAFGNAKTVYNNNSSRF 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSrnVKDYKILSNSNQDIIPG 328
Cdd:cd14873  146 GKFVQLNICQKGNIQGGRIVDYLLEKNRVVRQNPGERNYHIFYALLAGLEHEEREEFYLST--PENYHYLNQSGCVEDKT 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKNDVSAICSNLGVDEKDFqTAILRPRSK 408
Cdd:cd14873  224 ISDQESFREVITAMEVMQFSKEEVREVSRLLAGILHLGNIEFITAGGAQVSFKTALGRSAELLGLDPTQL-TDALTQRSM 302
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    409 AGK-EWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLdHGSATLNYIGLLDIAGFEIFENNSFEQLCINYTNEK 487
Cdd:cd14873  303 FLRgEEILTPLNVQQAVDSRDSLAMALYARCFEWVIKKINSRI-KGKEDFKSIGILDIFGFENFEVNHFEQFNINYANEK 381
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    488 LQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgppTGVLPLLDEEAVLPKSTDESFYSKLISTWDQNSS 567
Cdd:cd14873  382 LQEYFNKHIFSLEQLEYSREGLVWEDIDW-IDNGECLDLIEKK---LGLLALINEESHFPQATDSTLLEKLHSQHANNHF 457
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    568 KFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqpegEKSSSAGveanisNQEVKKSA 647
Cdd:cd14873  458 YVKPRVAVNNFGVKHYAGEVQYDVRGILEKNRDTFRDDLLNLLRESRFDFIYDLF----EHVSSRN------NQDTLKCG 527
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    648 RTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQEFF 727
Cdd:cd14873  528 SKHRRPTVSSQFKDSLHSLMATLSSSNPFFVRCIKPNMQKMPDQFDQAVVLNQLRYSGMLETVRIRKAGYAVRRPFQDFY 607
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|..
gi 730092    728 QRYRILYPENSTTTTFSSKlkastkqnCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14873  608 KRYKVLMRNLALPEDVRGK--------CTSLLQLYDASNSEWQLGKTKVFLR 651
MYSc_Myo36 cd14897
class XXXVI myosin, motor domain; This class of molluscan myosins contains a motor domain ...
90-779 1.61e-157

class XXXVI myosin, motor domain; This class of molluscan myosins contains a motor domain followed by a GlcAT-I (Beta1,3-glucuronyltransferase I) domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276862 [Multi-domain]  Cd Length: 635  Bit Score: 498.45  E-value: 1.61e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksrldeNSHEKLPPHIFAIAEEAYENLLS 169
Cdd:cd14897    2 TIVQTLKSRYNKDKFYTYIGDILVAVNPCKPLPIFDKKHHEEYSNL-----------SVRSQRPPHLFWIADQAYRRLLE 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASITSgspsniapvsgsSIVESFEMKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd14897   71 TGRNQCILVSGESGAGKTESTKYMIKHLMKLSP------------SDDSDLLDKIVQINPLLEAFGNASTVMNDNSSRFG 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRNvkDYKILSNSNQDIiPGI 329
Cdd:cd14897  139 KFIELHFTENGQLLGAKIDDYLLEKSRVVHRGNGEKNFHIFYALFAGMSRDRLLYYFLEDPD--CHRILRDDNRNR-PVF 215
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    330 NDVEN-------FKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSD-RAEQASFKND--VSAICSNLGVDEKDFQ 399
Cdd:cd14897  216 NDSEEleyyrqmFHDLTNIMKLIGFSEEDISVIFTILAAILHLTNIVFIPDeDTDGVTVADEypLHAVAKLLGIDEVELT 295
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    400 TAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNL-----DHGSATLNYIGLLDIAGFEIFENN 474
Cdd:cd14897  296 EALISNVNTIRGERIQSWKSLRQANDSRDALAKDLYSRLFGWIVGQINRNLwpdkdFQIMTRGPSIGILDMSGFENFKIN 375
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    475 SFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDESF 554
Cdd:cd14897  376 SFDQLCINLSNERLQQYFNDYVFPRERSEYEIEGIEWRDIEY-HDNDDVLELFFKK--PLGILPLLDEESTFPQSTDSSL 452
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    555 YSKLISTWDQNSSKFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqpegeksssagv 634
Cdd:cd14897  453 VQKLNKYCGESPRYVASPGNRVAFGIRHYAEQVTYDADGFLEKNRDNLSSDIVGCLLNSNNEFISDLF------------ 520
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    635 eanisnqevkksarTSTFKTTSSrhreqqiTLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAR 714
Cdd:cd14897  521 --------------TSYFKRSLS-------DLMTKLNSADPLFVRCIKPNNFLRPNKFDDELVRRQLLCNGLMEIAKIRR 579
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 730092    715 EGYPNRIAFQEFFQRYRILYPensttttFSSKLKASTKQNCEFLLTSLQLdtKVYKIGNTKLFFK 779
Cdd:cd14897  580 DGYPIRIKYEDFVKRYKEICD-------FSNKVRSDDLGKCQKILKTAGI--KGYQFGKTKVFLK 635
MYSc_Myo3 cd01379
class III myosin, motor domain; Myosin III has been shown to play a role in the vision process ...
89-779 4.21e-155

class III myosin, motor domain; Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. They are characterized by an N-terminal protein kinase domain and several IQ domains. Some members also contain WW, SH2, PH, and Y-phosphatase domains. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276830 [Multi-domain]  Cd Length: 633  Bit Score: 491.79  E-value: 4.21e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlskSRLDenshekLPPHIFAIAEEAYENLL 168
Cdd:cd01379    1 DTIVSQLQKRYSRDQIYTYIGDILIAVNPFQNLGIYTEEHSRLYRGA------KRSD------NPPHIFAVADAAYQAMI 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASItsgspsniapvsGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd01379   69 HQKKNQCIVISGESGAGKTESANLLVQQLTVL------------GKANNRTLEEKILQVNPLMEAFGNARTVINDNSSRF 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGL-DDSELKNLRLK-SRNVKDYKILSNSNQDII 326
Cdd:cd01379  137 GKYLEMKFTSTGAVTGARISEYLLEKSRVVHQAIGERNFHIFYYIYAGLaEDKKLAKYKLPeNKPPRYLQNDGLTVQDIV 216
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    327 PGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDraeQASFKNDVSAICSN----------LGVDEK 396
Cdd:cd01379  217 NNSGNREKFEEIEQCFKVIGFTKEEVDSVYSILAAILHIGDIEFTEV---ESNHQTDKSSRISNpealnnvaklLGIEAD 293
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    397 DFQTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSAT----LNyIGLLDIAGFEIFE 472
Cdd:cd01379  294 ELQEALTSHSVVTRGETIIRNNTVEEATDARDAMAKALYGRLFSWIVNRINSLLKPDRSAsdepLS-IGILDIFGFENFQ 372
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    473 NNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDE 552
Cdd:cd01379  373 KNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGIDVDLIEY-EDNRPLLDMFLQK--PMGLLALLDEESRFPKATDQ 449
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    553 SfyskLISTWDQN-SSKFKRSRLKNG--FILKHYAGDVEYTVEGWLSKNKDPLndnllsllsssQNDIISKLfqpegeks 629
Cdd:cd01379  450 T----LVEKFHNNiKSKYYWRPKSNAlsFGIHHYAGKVLYDASGFLEKNRDTL-----------PPDVVQLL-------- 506
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    630 ssagveanisnqevKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEG 709
Cdd:cd01379  507 --------------RSSENPLVRQTVATYFRYSLMDLLSKMVVGQPHFVRCIKPNDSRQAGKFDREKVLKQLRYTGVLET 572
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092    710 IRLAREGYPNRIAFQEFFQRYRIL-YPENSTTTtfssklkaSTKQNCEFLLTSLQLDTkvYKIGNTKLFFK 779
Cdd:cd01379  573 TRIRRQGFSHRILFADFLKRYYFLaFKWNEEVV--------ANRENCRLILERLKLDN--WALGKTKVFLK 633
MYSc_Myo9 cd01385
class IX myosin, motor domain; Myosin IX is a processive single-headed motor, which might play ...
90-779 1.84e-150

class IX myosin, motor domain; Myosin IX is a processive single-headed motor, which might play a role in signalling. It has a N-terminal RA domain, an IQ domain, a C1_1 domain, and a RhoGAP domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276836 [Multi-domain]  Cd Length: 690  Bit Score: 481.11  E-value: 1.84e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnRLSKsrldenshekLPPHIFAIAEEAYENLLS 169
Cdd:cd01385    2 TLLENLRARFKHGKIYTYVGSILIAVNPFKFLPIYNPKYVKMYQNR--RLGK----------LPPHIFAIADVAYHAMLR 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASI-TSGSPSNIapvsgssivesfEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd01385   70 KKKNQCIVISGESGSGKTESTNFLLHHLTALsQKGYGSGV------------EQTILGAGPVLEAFGNAKTAHNNNSSRF 137
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRnvKDYKILSNSNQDIIPG 328
Cdd:cd01385  138 GKFIQVNYRENGMVRGAVVEKYLLEKSRIVSQEKNERNYHVFYYLLAGASEEERKELHLKQP--EDYHYLNQSDCYTLEG 215
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVS---DRAEQASFKN-DVSAICSNL-GVDEKDFQTAIL 403
Cdd:cd01385  216 EDEKYEFERLKQAMEMVGFLPETQRQIFSVLSAVLHLGNIEYKKkayHRDESVTVGNpEVLDIISELlRVKEETLLEALT 295
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    404 RPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNL----DHGSATLNYIGLLDIAGFEIFENNSFEQL 479
Cdd:cd01385  296 TKKTVTVGETLILPYKLPEAIATRDAMAKCLYSALFDWIVLRINHALlnkkDLEEAKGLSIGVLDIFGFEDFGNNSFEQF 375
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    480 CINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDESFYSKLI 559
Cdd:cd01385  376 CINYANEHLQYYFNQHIFKLEQEEYKKEGISWHNIEY-TDNTGCLQLISKK--PTGLLCLLDEESNFPGATNQTLLAKFK 452
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    560 STWDQNSSKFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKL------------------ 621
Cdd:cd01385  453 QQHKDNKYYEKPQVMEPAFIIAHYAGKVKYQIKDFREKNLDLMRPDIVAVLRSSSSAFVRELigidpvavfrwavlraff 532
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    622 -----FQPEGEKSSSAGVEAN-ISNQEVKKSA---RTSTFKTTSSRHREQQIT-LLNQLASTHPHFVRCIIPNNVKKVKT 691
Cdd:cd01385  533 ramaaFREAGRRRAQRTAGHSlTLHDRTTKSLlhlHKKKKPPSVSAQFQTSLSkLMETLGQAEPFFIRCIKSNAEKKPLR 612
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    692 FNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQEFFQRYRILYPENsttttfssklKASTKQNCEFLLTSLQLDTKVYKI 771
Cdd:cd01385  613 FDDELVLRQLRYTGMLETVRIRRSGYSVRYTFQEFITQFQVLLPKG----------LISSKEDIKDFLEKLNLDRDNYQI 682

                 ....*...
gi 730092    772 GNTKLFFK 779
Cdd:cd01385  683 GKTKVFLK 690
MYSc_Myo15 cd01387
class XV mammal-like myosin, motor domain; The class XV myosins are monomeric. In vertebrates, ...
90-779 2.51e-149

class XV mammal-like myosin, motor domain; The class XV myosins are monomeric. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to the head domain are 2 MyTH4 domain, a FERM domain, and a SH3 domain. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276838 [Multi-domain]  Cd Length: 657  Bit Score: 476.94  E-value: 2.51e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksRLDEnshekLPPHIFAIAEEAYENLLS 169
Cdd:cd01387    2 TVLWNLKTRYERNLIYTYIGSILVSVNPYKMFDIYGLEQVQQYSGR-------ALGE-----LPPHLFAIANLAFAKMLD 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASItsgSPSNIAPVSgssivesfeMKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd01387   70 AKQNQCVVISGESGSGKTEATKLIMQYLAAV---NQRRNNLVT---------EQILEATPLLEAFGNAKTVRNDNSSRFG 137
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFnEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKsrNVKDYKILSNSNQDIIPGI 329
Cdd:cd01387  138 KYLEVFF-EGGVIVGAITSQYLLEKSRIVTQAKNERNYHVFYELLAGLPAQLRQKYGLQ--EAEKYFYLNQGGNCEIAGK 214
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    330 NDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEF----VSDRAEQASFKND--VSAICSNLGVDEKDFQTAIL 403
Cdd:cd01387  215 SDADDFRRLLAAMQVLGFSSEEQDSIFRILASVLHLGNVYFhkrqLRHGQEGVSVGSDaeIQWVAHLLQISPEGLQKALT 294
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    404 RPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINY 483
Cdd:cd01387  295 FKVTETRRERIFTPLTIDQALDARDAIAKALYALLFSWLVTRVNAIVYSGTQDTLSIAILDIFGFEDLSENSFEQLCINY 374
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    484 TNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDESFYSKLISTWD 563
Cdd:cd01387  375 ANENLQYYFNKHVFKLEQEEYIREQIDWTEIAF-ADNQPVINLISKK--PVGILHILDDECNFPQATDHSFLEKCHYHHA 451
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    564 QNSSkFKRSRLK-NGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPegeksssagVEANISNQE 642
Cdd:cd01387  452 LNEL-YSKPRMPlPEFTIKHYAGQVWYQVHGFLDKNRDQLRQDVLELLVSSRTRVVAHLFSS---------HRAQTDKAP 521
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    643 VKKS-ARTSTFK----TTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGY 717
Cdd:cd01387  522 PRLGkGRFVTMKprtpTVAARFQDSLLQLLEKMERCNPWFVRCLKPNHKKEPMLFDMDVVMAQLRYSGMLETIRIRKEGY 601
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 730092    718 PNRIAFQEFFQRYRILYPensttttfSSKLKASTKQNCEFLLTSLQ--LDTKVYKIGNTKLFFK 779
Cdd:cd01387  602 PVRLPFQVFIDRYRCLVA--------LKLPRPAPGDMCVSLLSRLCtvTPKDMYRLGATKVFLR 657
MYSc_Myo46 cd14907
class XLVI myosin, motor domain; The class XLVI myosins are comprised of Alveolata. Not much ...
89-733 1.72e-145

class XLVI myosin, motor domain; The class XLVI myosins are comprised of Alveolata. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276872 [Multi-domain]  Cd Length: 669  Bit Score: 466.82  E-value: 1.72e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNL-NLYSEDHINLYHNKHNRLSKSrldeNSHEKLPPHIFAIAEEAYENL 167
Cdd:cd14907    1 AELLINLKKRYQQDKIFTYVGPTLIVMNPYKQIdNLFSEEVMQMYKEQIIQNGEY----FDIKKEPPHIYAIAALAFKQL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    168 LSEGKDQSILVTGESGAGKTENTKKILQYLASITS---------GSPSNIAPVSGSSIveSFEMKILQSNPILESFGNAQ 238
Cdd:cd14907   77 FENNKKQAIVISGESGAGKTENAKYAMKFLTQLSQqeqnseevlTLTSSIRATSKSTK--SIEQKILSCNPILEAFGNAK 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    239 TVRNNNSSRFGKFIKIEFNEH-GMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRNVKD-YK 316
Cdd:cd14907  155 TVRNDNSSRFGKYVSILVDKKkRKILGARIQNYLLEKSRVTQQGQGERNYHIFYHLLYGADQQLLQQLGLKNQLSGDrYD 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    317 ILSNSNQDIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEF-----VSDRAEQASFKNDVSAICSNL 391
Cdd:cd14907  235 YLKKSNCYEVDTINDEKLFKEVQQSFQTLGFTEEEQDSIWRILAAILLLGNLQFddstlDDNSPCCVKNKETLQIIAKLL 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    392 GVDEKDFQTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNY--------IGLL 463
Cdd:cd14907  315 GIDEEELKEALTTKIRKVGNQVITSPLSKKECINNRDSLSKELYDRLFNWLVERLNDTIMPKDEKDQQlfqnkylsIGLL 394
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    464 DIAGFEIFENNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQwDYIDY--GKDLQLTIDLIESkgPPTGVLPLLD 541
Cdd:cd14907  395 DIFGFEVFQNNSFEQLCINYTNEKLQQLYISYVFKAEEQEFKEEGLE-DYLNQlsYTDNQDVIDLLDK--PPIGIFNLLD 471
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    542 EEAVLPKSTDESFYSKLISTWDQNSS-KFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISK 620
Cdd:cd14907  472 DSCKLATGTDEKLLNKIKKQHKNNSKlIFPNKINKDTFTIRHTAKEVEYNIEGFREKNKDEISQSIINCIQNSKNRIISS 551
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    621 LFQpeGEKSSSAGVEANISNQEVKKsartstfKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQ 700
Cdd:cd14907  552 IFS--GEDGSQQQNQSKQKKSQKKD-------KFLGSKFRNQMKQLMNELMQCDVHFIRCIKPNEEKKADLFIQGYVLNQ 622
                        650       660       670
                 ....*....|....*....|....*....|...
gi 730092    701 LRCNGVLEGIRLAREGYPNRIAFQEFFQRYRIL 733
Cdd:cd14907  623 IRYLGVLESIRVRKQGYPYRKSYEDFYKQYSLL 655
MYSc_Myo39 cd14900
class XXXIX myosin, motor domain; The class XXXIX myosins are found in Stramenopiles. Not much ...
90-733 1.07e-144

class XXXIX myosin, motor domain; The class XXXIX myosins are found in Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276865  Cd Length: 627  Bit Score: 463.24  E-value: 1.07e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNL-NLYSEDHINLYHNKHNRLSKSRLDENShEKLPPHIFAIAEEAYE--- 165
Cdd:cd14900    2 TILSALETRFYAQKIYTNTGAILLAVNPFQKLpGLYSSDTMAKYLLSFEARSSSTRNKGS-DPMPPHIYQVAGEAYKamm 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    166 -NLLSEGKDQSILVTGESGAGKTENTKKILQYLASItsGSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQTVRNNN 244
Cdd:cd14900   81 lGLNGVMSDQSILVSGESGSGKTESTKFLMEYLAQA--GDNNLAASVSMGKSTSGIAAKVLQTNILLESFGNARTLRNDN 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    245 SSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNlrlksrnvkdykilsnsnqd 324
Cdd:cd14900  159 SSRFGKFIKLHFTSGGRLTGASIQTYLLEKVRLVSQSKGERNYHIFYEMAIGASEAARKR-------------------- 218
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    325 iipgindvENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQ--ASFKNDVSAIC--------SNLGVD 394
Cdd:cd14900  219 --------DMYRRVMDAMDIIGFTPHERAGIFDLLAALLHIGNLTFEHDENSDrlGQLKSDLAPSSiwsrdaaaTLLSVD 290
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    395 EKDFQTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDH-----GSATLNYIGLLDIAGFE 469
Cdd:cd14900  291 ATKLEKALSVRRIRAGTDFVSMKLSAAQANNARDALAKALYGRLFDWLVGKMNAFLKMddsskSHGGLHFIGILDIFGFE 370
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    470 IFENNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgpPTGVLPLLDEEAVLPKS 549
Cdd:cd14900  371 VFPKNSFEQLCINFANETLQQQFNDYVFKAEQREYESQGVDWKYVEF-CDNQDCVNLISQR--PTGILSLIDEECVMPKG 447
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    550 TDESFYSKLISTWdQNSSKFKRSRLKNG---FILKHYAGDVEYTVEGWLSKNKDPLNDNllsllsssqndiISKLFQPEG 626
Cdd:cd14900  448 SDTTLASKLYRAC-GSHPRFSASRIQRArglFTIVHYAGHVEYSTDGFLEKNKDVLHQE------------AVDLFVYGL 514
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    627 EksssagveanisnqevkksartstFKttssrhrEQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGV 706
Cdd:cd14900  515 Q------------------------FK-------EQLTTLLETLQQTNPHYVRCLKPNDLCKAGIYERERVLNQLRCNGV 563
                        650       660
                 ....*....|....*....|....*..
gi 730092    707 LEGIRLAREGYPNRIAFQEFFQRYRIL 733
Cdd:cd14900  564 MEAVRVARAGFPIRLLHDEFVARYFSL 590
MYSc_Myo30 cd14891
class XXX myosin, motor domain; Myosins of class XXX are composed of an amino-terminal ...
91-779 1.75e-144

class XXX myosin, motor domain; Myosins of class XXX are composed of an amino-terminal SH3-like domain, two IQ motifs, a coiled-coil region and a PX domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276856  Cd Length: 645  Bit Score: 462.98  E-value: 1.75e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     91 VLYNLEKRYDCDLI--YTYSGLFLVAINPYHNLnlySEDHINLYHNKhnrlsksrldenSHEKLPPHIFAIAEEAYENL- 167
Cdd:cd14891    3 ILHNLEERSKLDNQrpYTFMANVLIAVNPLRRL---PEPDKSDYINT------------PLDPCPPHPYAIAEMAYQQMc 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    168 LSEGKD--QSILVTGESGAGKTENTKKILQYL------ASITSGSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQT 239
Cdd:cd14891   68 LGSGRMqnQSIVISGESGAGKTETSKIILRFLttravgGKKASGQDIEQSSKKRKLSVTSLDERLMDTNPILESFGNAKT 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    240 VRNNNSSRFGKFIKIEF-NEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSrnVKDYKIL 318
Cdd:cd14891  148 LRNHNSSRFGKFMKLQFtKDKFKLAGAFIETYLLEKSRLVAQPPGERNFHIFYQLLAGASAELLKELLLLS--PEDFIYL 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    319 SNSNQDIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQA-------SFKNDVSAICSNL 391
Cdd:cd14891  226 NQSGCVSDDNIDDAANFDNVVSALDTVGIDEDLQLQIWRILAGLLHLGNIEFDEEDTSEGeaeiaseSDKEALATAAELL 305
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    392 GVDEKDFQTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIF 471
Cdd:cd14891  306 GVDEEALEKVITQREIVTRGETFTIKRNAREAVYSRDAIAKSIYERLFLWIVQQINTSLGHDPDPLPYIGVLDIFGFESF 385
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    472 E-NNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgpPTGVLPLLDEEAVLPKST 550
Cdd:cd14891  386 EtKNDFEQLLINYANEALQATFNQQVFIAEQELYKSEGIDVGVITW-PDNRECLDLIASK--PNGILPLLDNEARNPNPS 462
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    551 DESFYSKLISTWDQNSSkFKRSRLKN---GFILKHYAGDVEYTVEGWLSKNkdplndnllsllsssqNDIISKLFqpege 627
Cdd:cd14891  463 DAKLNETLHKTHKRHPC-FPRPHPKDmreMFIVKHYAGTVSYTIGSFIDKN----------------NDIIPEDF----- 520
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    628 ksssagveanisnqevkksartSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVL 707
Cdd:cd14891  521 ----------------------EDLLASSAKFSDQMQELVDTLEATRCNFIRCIKPNAAMKVGVFDNRYVVDQLRCSGIL 578
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 730092    708 EGIRLAREGYPNRIAFQEFFQRYRILYPEnSTTTTFSSKLKASTkqncEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14891  579 QTCEVLKVGLPTRVTYAELVDVYKPVLPP-SVTRLFAENDRTLT----QAILWAFRVPSDAYRLGRTRVFFR 645
MYSc_Myo41 cd14902
class XLI myosin, motor domain; The class XLI myosins are comprised of Stramenopiles. Not much ...
89-768 6.91e-143

class XLI myosin, motor domain; The class XLI myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276867 [Multi-domain]  Cd Length: 716  Bit Score: 461.28  E-value: 6.91e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNL-NLYSEDHINLY-HNKHNRLSKSRLDEnshekLPPHIFAIAEEAYEN 166
Cdd:cd14902    1 AALLQALSERFEHDQIYTSIGDILVALNPLKPLpDLYSESQLNAYkASMTSTSPVSQLSE-----LPPHVFAIGGKAFGG 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    167 LL-SEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSIVESfemKILQSNPILESFGNAQTVRNNNS 245
Cdd:cd14902   76 LLkPERRNQSILVSGESGSGKTESTKFLMQFLTSVGRDQSSTEQEGSDAVEIGK---RILQTNPILESFGNAQTIRNDNS 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    246 SRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKsrNVKDYKILSNS---- 321
Cdd:cd14902  153 SRFGKFIKIQFGANNEIVGAQIVSYLLEKVRLLHQSPEERSFHIFYELLEGADKTLLDLLGLQ--KGGKYELLNSYgpsf 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    322 NQDIIPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFvsDRAEQASFKNDVSAICSN--------LGV 393
Cdd:cd14902  231 ARKRAVADKYAQLYVETVRAFEDTGVGELERLDIFKILAALLHLGNVNF--TAENGQEDATAVTAASRFhlakcaelMGV 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    394 DEKDFQTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSAT---------LNYIGLLD 464
Cdd:cd14902  309 DVDKLETLLSSREIKAGVEVMVLKLTPEQAKEICGSLAKAIYGRLFTWLVRRLSDEINYFDSAvsisdedeeLATIGILD 388
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    465 IAGFEIFENNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQlTIDLIESKgpPTGVLPLLDEEA 544
Cdd:cd14902  389 IFGFESLNRNGFEQLCINYANERLQAQFNEFVFVKEQQIYIAEGIDWKNISYPSNAA-CLALFDDK--SNGLFSLLDQEC 465
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    545 VLPKSTDESFysklistwdqnSSKFKRSRLKNG-FILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQ 623
Cdd:cd14902  466 LMPKGSNQAL-----------STKFYRYHGGLGqFVVHHFAGRVCYNVEQFVEKNTDALPADASDILSSSSNEVVVAIGA 534
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    624 peGEKSSSAGVEANisnqeVKKSARTSTFKT--TSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQL 701
Cdd:cd14902  535 --DENRDSPGADNG-----AAGRRRYSMLRApsVSAQFKSQLDRLIVQIGRTEAHYVRCLKPNEVKKPGIFDRERMVEQM 607
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 730092    702 RCNGVLEGIRLAREGYPNRIAFQEFFQRYRILYPENSTTTTFSSKLK-ASTKQNCEFLLTSLQLDTKV 768
Cdd:cd14902  608 RSVGVLEAVRIARHGYSVRLAHASFIELFSGFKCFLSTRDRAAKMNNhDLAQALVTVLMDRVLLEDGV 675
PTZ00014 PTZ00014
myosin-A; Provisional
46-821 1.09e-137

myosin-A; Provisional


Pssm-ID: 240229 [Multi-domain]  Cd Length: 821  Bit Score: 450.25  E-value: 1.09e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      46 IVHPLDSTEVSNLVQ----------VRISDVF----PVNPSTFDKVeNMseLTHLNEPSVLYNLEKRYDCDLIYTYSGLF 111
Cdd:PTZ00014   56 LVLPGSTGEKLTLKQidpptnstfeVKPEHAFnansQIDPMTYGDI-GL--LPHTNIPCVLDFLKHRYLKNQIYTTADPL 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     112 LVAINPYHNLNLYSEDHINLYHnkhnrlsksrlDENSHEKLPPHIFAIAEEAYENLLSEGKDQSILVTGESGAGKTENTK 191
Cdd:PTZ00014  133 LVAINPFKDLGNTTNDWIRRYR-----------DAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGESGAGKTEATK 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     192 KILQYLASITSGSPSniapvsgssivESFEMKILQSNPILESFGNAQTVRNNNSSRFGKFIKIEFNEHGMINGAHIEWYL 271
Cdd:PTZ00014  202 QIMRYFASSKSGNMD-----------LKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFL 270
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     272 LEKSRIVHQNSKERNYHIFYQLLSGLDDsELKNlRLKSRNVKDYKILSNSNQDiIPGINDVENFKELLSALNIIGFSKDQ 351
Cdd:PTZ00014  271 LEKSRVVTQEDDERSYHIFYQLLKGAND-EMKE-KYKLKSLEEYKYINPKCLD-VPGIDDVKDFEEVMESFDSMGLSESQ 347
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     352 IRWIFQVVAIILLIGNIEFVSdraEQASFKNDVSAI-----------CSNLGVDEKDFQTAILRPRSKAGKEWVSQSKNS 420
Cdd:PTZ00014  348 IEDIFSILSGVLLLGNVEIEG---KEEGGLTDAAAIsdeslevfneaCELLFLDYESLKKELTVKVTYAGNQKIEGPWSK 424
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     421 QQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINYTNEKLQQFFNNHMFVLE 500
Cdd:PTZ00014  425 DESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERE 504
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     501 QSEYLKENIQWDYIDYgKDLQLTIDLIESKGppTGVLPLLDEEAVLPKSTDESFYSKLISTWdQNSSKFKRSRL-KNG-F 578
Cdd:PTZ00014  505 SKLYKDEGISTEELEY-TSNESVIDLLCGKG--KSVLSILEDQCLAPGGTDEKFVSSCNTNL-KNNPKYKPAKVdSNKnF 580
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     579 ILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpegeksssaGVEAnisnqEVKKSARTSTFkttSSR 658
Cdd:PTZ00014  581 VIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFE---------GVEV-----EKGKLAKGQLI---GSQ 643
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     659 HREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQEFFQRYRILypenS 738
Cdd:PTZ00014  644 FLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYL----D 719
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     739 TTTTFSSKLKASTKqnCEFLLTSLQLDTKVYKIGNTKLFFK---AGVLADLEKQKDVKLNNIMIKLTATIRGYTVRKEIT 815
Cdd:PTZ00014  720 LAVSNDSSLDPKEK--AEKLLERSGLPKDSYAIGKTMVFLKkdaAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVR 797

                  ....*.
gi 730092     816 YHLQKL 821
Cdd:PTZ00014  798 KNIKSL 803
MYSc_Myo28 cd14889
class XXVIII myosin, motor domain; These myosins are found in fish, chicken, and mollusks. The ...
91-779 9.68e-136

class XXVIII myosin, motor domain; These myosins are found in fish, chicken, and mollusks. The tail regions of these class-XXVIII myosins consist of an IQ motif, a short coiled-coil region, and an SH2 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276854  Cd Length: 659  Bit Score: 439.34  E-value: 9.68e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     91 VLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYhnkhnrlsksRLDENSheKLPPHIFAIAEEAYENLLSE 170
Cdd:cd14889    3 LLEVLKVRFMQSNIYTYVGDILVAINPFKYLHIYEKEVSQKY----------KCEKKS--SLPPHIFAVADRAYQSMLGR 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    171 G----KDQSILVTGESGAGKTENTKKILQYLASITSGSpsniapvsgssivESFEMKILQSNPILESFGNAQTVRNNNSS 246
Cdd:cd14889   71 LargpKNQCIVISGESGAGKTESTKLLLRQIMELCRGN-------------SQLEQQILQVNPLLEAFGNAQTVMNDNSS 137
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    247 RFGKFIKIEFnEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLksRNVKDYKILSN--SNQD 324
Cdd:cd14889  138 RFGKYIQLRF-RNGHVKGAKINEYLLEKSRVVHQDGGEENFHIFYYMFAGISAEDRENYGL--LDPGKYRYLNNgaGCKR 214
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    325 IIPGINdvENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKND----VSAICSNLGVDEKDFQT 400
Cdd:cd14889  215 EVQYWK--KKYDEVCNAMDMVGFTEQEEVDMFTILAGILSLGNITFEMDDDEALKVENDsngwLKAAAGQFGVSEEDLLK 292
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    401 AILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNL---DHGSATLNYIGLLDIAGFEIFENNSFE 477
Cdd:cd14889  293 TLTCTVTFTRGEQIQRHHTKQQAEDARDSIAKVAYGRVFGWIVSKINQLLapkDDSSVELREIGILDIFGFENFAVNRFE 372
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    478 QLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDESFYSK 557
Cdd:cd14889  373 QACINLANEQLQYFFNHHIFLMEQKEYKKEGIDWKEITY-KDNKPILDLFLNK--PIGILSLLDEQSHFPQATDESFVDK 449
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    558 LISTWDQNSSKFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpeGEKSSSAGVEAN 637
Cdd:cd14889  450 LNIHFKGNSYYGKSRSKSPKFTVNHYAGKVTYNASGFLEKNRDTIPASIRTLFINSATPLLSVLFT--ATRSRTGTLMPR 527
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    638 ISNQEVKKSARTSTFK-TTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREG 716
Cdd:cd14889  528 AKLPQAGSDNFNSTRKqSVGAQFKHSLGVLMEKMFAASPHFVRCIKPNHVKVPGQLDSKYIQDQLRYNGLLETIRIRREG 607
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 730092    717 YPNRIAFQEFFQRYRILYPENSTTTtfssklkasTKQNCEFLLTSLQLdtKVYKIGNTKLFFK 779
Cdd:cd14889  608 FSWRPSFAEFAERYKILLCEPALPG---------TKQSCLRILKATKL--VGWKCGKTRLFFK 659
MYSc_Myo34 cd14895
class XXXIV myosin, motor domain; Class XXXIV myosins are composed of an IQ motif, a short ...
89-779 1.85e-132

class XXXIV myosin, motor domain; Class XXXIV myosins are composed of an IQ motif, a short coiled-coil region, 5 tandem ANK repeats, and a carboxy-terminal FYVE domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276860 [Multi-domain]  Cd Length: 704  Bit Score: 431.68  E-value: 1.85e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNlysedhiNLYHnkhnrLSKSRLDENSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14895    1 PAFVDYLAQRYGVDQVYCRSGAVLIAVNPFKHIP-------GLYD-----LHKYREEMPGWTALPPHVFSIAEGAYRSLR 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 -------SEGKDQSILVTGESGAGKTENTKKILQYLASItsgSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQTVR 241
Cdd:cd14895   69 rrlhepgASKKNQTILVSGESGAGKTETTKFIMNYLAES---SKHTTATSSSKRRRAISGSELLSANPILESFGNARTLR 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    242 NNNSSRFGKFIKIEFNEHGM-----INGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRNVKDYK 316
Cdd:cd14895  146 NDNSSRFGKFVRMFFEGHELdtslrMIGTSVETYLLEKVRVVHQNDGERNFHVFYELLAGAADDMKLELQLELLSAQEFQ 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    317 ILSNSN----QDiipGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKNDV-SAIC--- 388
Cdd:cd14895  226 YISGGQcyqrND---GVRDDKQFQLVLQSMKVLGFTDVEQAAIWKILSALLHLGNVLFVASSEDEGEEDNGAaSAPCrla 302
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    389 -----------------SNLGVDEKDFQTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINK--- 448
Cdd:cd14895  303 saspssltvqqhldivsKLFAVDQDELVSALTTRKISVGGETFHANLSLAQCGDARDAMARSLYAFLFQFLVSKVNSasp 382
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    449 --------NLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDL 520
Cdd:cd14895  383 qrqfalnpNKAANKDTTPCIAVLDIFGFEEFEVNQFEQFCINYANEKLQYQFIQDILLTEQQAHIEEGIKWNAVDY-EDN 461
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    521 QLTIDLIESKgpPTGVLPLLDEEAVLPKSTDESFYSKLISTWdQNSSKFKRSRLKN---GFILKHYAGDVEYTVEGWLSK 597
Cdd:cd14895  462 SVCLEMLEQR--PSGIFSLLDEECVVPKGSDAGFARKLYQRL-QEHSNFSASRTDQadvAFQIHHYAGAVRYQAEGFCEK 538
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    598 NKDPLNDNLLSLLSSSQNDIISKLFQPegeksSSAGVEANISNQEVKKSARTSTFKTT--SSRHREQQITLLNQLASTHP 675
Cdd:cd14895  539 NKDQPNAELFSVLGKTSDAHLRELFEF-----FKASESAELSLGQPKLRRRSSVLSSVgiGSQFKQQLASLLDVVQQTQT 613
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    676 HFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQEFFQRYRILypensTTTTFSSKLKASTkqnc 755
Cdd:cd14895  614 HYIRCIKPNDESASDQFDMAKVSSQLRYGGVLKAVEIMRQSYPVRMKHADFVKQYRLL-----VAAKNASDATASA---- 684
                        730       740
                 ....*....|....*....|....
gi 730092    756 efLLTSLQLDTKvyKIGNTKLFFK 779
Cdd:cd14895  685 --LIETLKVDHA--ELGKTRVFLR 704
MYSc_Myo43 cd14904
class XLIII myosin, motor domain; The class XLIII myosins are comprised of Stramenopiles. Not ...
89-779 2.63e-131

class XLIII myosin, motor domain; The class XLIII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276869  Cd Length: 653  Bit Score: 426.67  E-value: 2.63e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNL-NLYSeDHINLYHNKHNRlsksrldenshEKLPPHIFAIAEEAYENL 167
Cdd:cd14904    1 PSILFNLKKRFAASKPYTYTNDIVIALNPYKWIdNLYG-DHLHEQYLKKPR-----------DKLQPHVYATSTAAYKHM 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    168 LSEGKDQSILVTGESGAGKTENTKKILQYLASITSG-SPSNIApvsgssivesfemKILQSNPILESFGNAQTVRNNNSS 246
Cdd:cd14904   69 LTNEMNQSILVSGESGAGKTETTKIVMNHLASVAGGrKDKTIA-------------KVIDVNPLLESFGNAKTTRNDNSS 135
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    247 RFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRnvKDYKILSNS-NQDI 325
Cdd:cd14904  136 RFGKFTQLQFDGRGKLIGAKCETYLLEKSRVVSIAEGERNYHIFYQLLAGLSSEERKEFGLDPN--CQYQYLGDSlAQMQ 213
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    326 IPGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFvSDRAEQASFKNDVSAIC---SNLGVDEKDFQTAI 402
Cdd:cd14904  214 IPGLDDAKLFASTQKSLSLIGLDNDAQRTLFKILSGVLHLGEVMF-DKSDENGSRISNGSQLSqvaKMLGLPTTRIEEAL 292
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    403 LRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLD-HGSATLNYIGLLDIAGFEIFENNSFEQLCI 481
Cdd:cd14904  293 CNRSVVTRNESVTVPLAPVEAEENRDALAKAIYSKLFDWMVVKINAAIStDDDRIKGQIGVLDIFGFEDFAHNGFEQFCI 372
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    482 NYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgppTGVLPLLDEEAVLPKSTDESFYSK---- 557
Cdd:cd14904  373 NYANEKLQQKFTTDVFKTVEEEYIREGLQWDHIEY-QDNQGIVEVIDGK---MGIIALMNDHLRQPRGTEEALVNKirtn 448
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    558 LISTWDQNSSKFKRSRlKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpegeksssaGVEAN 637
Cdd:cd14904  449 HQTKKDNESIDFPKVK-RTQFIINHYAGPVTYETVGFMEKHRDTLQNDLLDLVLLSSLDLLTELFG---------SSEAP 518
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    638 ISNQEVKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGY 717
Cdd:cd14904  519 SETKEGKSGKGTKAPKSLGSQFKTSLSQLMDNIKTTNTHYVRCIKPNANKSPTEFDKRMVVEQLRSAGVIEAIRITRSGY 598
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 730092    718 PNRIAFQEFFQRYRILYPensttttfSSKLKASTKQNCEFLLTSLQLDTKV-YKIGNTKLFFK 779
Cdd:cd14904  599 PSRLTPKELATRYAIMFP--------PSMHSKDVRRTCSVFMTAIGRKSPLeYQIGKSLIYFK 653
MYSc_Myo14 cd14876
class XIV myosin, motor domain; These myosins localize to plasma membranes of the ...
89-779 6.50e-131

class XIV myosin, motor domain; These myosins localize to plasma membranes of the intracellular parasites and may be involved in the cell invasion process. Their known functions include: transporting phagosomes to the nucleus and perturbing the developmentally regulated elimination of the macronucleus during conjugation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. C-terminal to their motor domain these myosins have a MyTH4-FERM protein domain combination. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276843  Cd Length: 649  Bit Score: 425.56  E-value: 6.50e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHnkhnrlsksrlDENSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14876    1 PCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNATDEWIRKYR-----------DAPDLTKLPPHVFYTARRALENLH 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNiapvsgssiveSFEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd14876   70 GVNKSQTIIVSGESGAGKTEATKQIMRYFASAKSGNMDL-----------RIQTAIMAANPVLEAFGNAKTIRNNNSSRF 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDsELKNlRLKSRNVKDYKILSNSNQDiIPG 328
Cdd:cd14876  139 GRFMQLDVASEGGIRYGSVVAFLLEKSRIVTQDDNERSYHIFYQLLKGADS-EMKS-KYHLLGLKEYKFLNPKCLD-VPG 215
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAE----QASFKNDVSAI----CSNLGVDEKDFQT 400
Cdd:cd14876  216 IDDVADFEEVLESLKSMGLTEEQIDTVFSIVSGVLLLGNVKITGKTEQgvddAAAISNESLEVfkeaCSLLFLDPEALKR 295
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    401 AILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLC 480
Cdd:cd14876  296 ELTVKVTKAGGQEIEGRWTKDDAEMLKLSLAKAMYDKLFLWIIRNLNSTIEPPGGFKNFMGMLDIFGFEVFKNNSLEQLF 375
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    481 INYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLtIDLIESKGppTGVLPLLDEEAVLPKSTDESFYSKLIS 560
Cdd:cd14876  376 INITNEMLQKNFIDIVFERESKLYKDEGIPTAELEYTSNAEV-IDVLCGKG--KSVLSILEDQCLAPGGSDEKFVSACVS 452
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    561 TWdQNSSKFKRSRLKN--GFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqpEGEKsssagVEANi 638
Cdd:cd14876  453 KL-KSNGKFKPAKVDSniNFIVVHTIGDIQYNAEGFLFKNKDVLRAELVEVVQASTNPVVKALF--EGVV-----VEKG- 523
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    639 snqevkKSARTSTFKTTSSRHREQQITLLNqlaSTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYP 718
Cdd:cd14876  524 ------KIAKGSLIGSQFLKQLESLMGLIN---STEPHFIRCIKPNETKKPLEWNSSKVLIQLHALSILEALQLRQLGYS 594
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092    719 NRIAFQEFFQRYRILYPenstttTFSSKLKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14876  595 YRRPFEEFLYQFKFLDL------GIANDKSLDPKVAALKLLESSGLSEDEYAIGKTMVFLK 649
MYSc_Myo47 cd14908
class XLVII myosin, motor domain; The class XLVII myosins are comprised of Stramenopiles. Not ...
89-737 4.98e-128

class XLVII myosin, motor domain; The class XLVII myosins are comprised of Stramenopiles. Not much is known about this myosin class. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276873 [Multi-domain]  Cd Length: 682  Bit Score: 418.54  E-value: 4.98e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhNRLSKSRLDenSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14908    1 PAILHSLSRRFFRGIIYTWTGPVLIAVNPFQRLPLYGKEILESYRQE-GLLRSQGIE--SPQALGPHVFAIADRSYRQMM 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEG-KDQSILVTGESGAGKTENTKKILQYLAsiTSGSPSNIAPVSGSSIVESFEM-KILQSNPILESFGNAQTVRNNNSS 246
Cdd:cd14908   78 SEIrASQSILISGESGAGKTESTKIVMLYLT--TLGNGEEGAPNEGEELGKLSIMdRVLQSNPILEAFGNARTLRNDNSS 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    247 RFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRNVKDYKILSN---SNQ 323
Cdd:cd14908  156 RFGKFIELGFNRAGNLLGAKVQTYLLEKVRLPFHASGERNYHIFYQLLRGGDEEEHEKYEFHDGITGGLQLPNEfhyTGQ 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    324 DIIPGINDVENFKEL---LSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVS----DRAEQASFKND--VSAICSNLGVD 394
Cdd:cd14908  236 GGAPDLREFTDEDGLvytLKAMRTMGWEESSIDTILDIIAGLLHLGQLEFESkeedGAAEIAEEGNEkcLARVAKLLGVD 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    395 EKDFQTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINK--NLDHGSATLNYIGLLDIAGFEIFE 472
Cdd:cd14908  316 VDKLLRALTSKIIVVRGKEITTKLTPHKAYDARDALAKTIYGALFLWVVATVNSsiNWENDKDIRSSVGVLDIFGFECFA 395
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    473 NNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIEskGPPTGVLPLLDEEAVLP-KSTD 551
Cdd:cd14908  396 HNSFEQLCINFTNEALQQQFNQFIFKLEQKEYEKESIEWAFIEF-PDNQDCLDTIQ--AKKKGILTMLDDECRLGiRGSD 472
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    552 ESFYSKLISTW----DQNSSKFKR------SRLKNGFILKHYAGDVEYTVE-GWLSKNKDPLNDNLLSllsssqndiisk 620
Cdd:cd14908  473 ANYASRLYETYlpekNQTHSENTRfeatsiQKTKLIFAVRHFAGQVQYTVEtTFCEKNKDEIPLTADS------------ 540
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    621 LFQpegeksssagveanisnqevkksartstfktTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQ 700
Cdd:cd14908  541 LFE-------------------------------SGQQFKAQLHSLIEMIEDTDPHYIRCIKPNDAAKPDLVTRKRVTEQ 589
                        650       660       670
                 ....*....|....*....|....*....|....*..
gi 730092    701 LRCNGVLEGIRLAREGYPNRIAFQEFFQRYRILYPEN 737
Cdd:cd14908  590 LRYGGVLEAVRVARSGYPVRLPHKDFFKRYRMLLPLI 626
MYSc_Myo35 cd14896
class XXXV myosin, motor domain; This class of metazoan myosins contains 2 IQ motifs, 2 MyTH4 ...
89-779 7.46e-124

class XXXV myosin, motor domain; This class of metazoan myosins contains 2 IQ motifs, 2 MyTH4 domains, a single FERM domain, and an SH3 domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276861 [Multi-domain]  Cd Length: 644  Bit Score: 405.32  E-value: 7.46e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksRLDENsheklPPHIFAIAEEAYENLL 168
Cdd:cd14896    1 SSVLLCLKKRFHLGRIYTFGGPILLSLNPHRSLPLFSEEVLASYHPR-------KALNT-----TPHIFAIAASAYRLSQ 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPS-NIAPVsgssivesfeMKILqsnPILESFGNAQTVRNNNSSR 247
Cdd:cd14896   69 STGQDQCILLSGHSGSGKTEAAKKIVQFLSSLYQDQTEdRLRQP----------EDVL---PILESFGHAKTILNANASR 135
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    248 FGKFIKIEFnEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSrnVKDYKILSNSNQDIIP 327
Cdd:cd14896  136 FGQVLRLHL-QHGVIVGASVSHYLLETSRVVFQAQAERSFHVFYELLAGLDPEEREQLSLQG--PETYYYLNQGGACRLQ 212
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    328 GINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSdrAEQASFknDVSAICSN---------LGVDEKDF 398
Cdd:cd14896  213 GKEDAQDFEGLLKALQGLGLCAEELTAIWAVLAAILQLGNICFSS--SERESQ--EVAAVSSWaeihtaarlLQVPPERL 288
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    399 QTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLD--HGSATLNYIGLLDIAGFEIFENNSF 476
Cdd:cd14896  289 EGAVTHRVTETPYGRVSRPLPVEGAIDARDALAKTLYSRLFTWLLKRINAWLAppGEAESDATIGVVDAYGFEALRVNGL 368
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    477 EQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIdYGKDLQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDESFYS 556
Cdd:cd14896  369 EQLCINLASERLQLFSSQTLLAQEEEECQRELLPWVPI-PQPPRESCLDLLVDQ--PHSLLSILDDQTWLSQATDHTFLQ 445
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    557 KLISTWDQNSSKFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpegEKSSSAGVEA 636
Cdd:cd14896  446 KCHYHHGDHPSYAKPQLPLPVFTVRHYAGTVTYQVHKFLNRNRDQLDPAVVEMLAQSQLQLVGSLFQ---EAEPQYGLGQ 522
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    637 NISnqevkksartstfkTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREG 716
Cdd:cd14896  523 GKP--------------TLASRFQQSLGDLTARLGRSHVYFIHCLNPNPGKLPGLFDVGHVTEQLRQAGILEAIGTRSEG 588
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 730092    717 YPNRIAFQEFFQRYRILYPENSTTttfssklkASTKQNCEFLLTS-LQLDTKVYKIGNTKLFFK 779
Cdd:cd14896  589 FPVRVPFQAFLARFGALGSERQEA--------LSDRERCGAILSQvLGAESPLYHLGATKVLLK 644
MYSc_Myo19 cd14880
class XIX myosin, motor domain; Monomeric myosin-XIX (Myo19) functions as an actin-based motor ...
90-777 2.82e-115

class XIX myosin, motor domain; Monomeric myosin-XIX (Myo19) functions as an actin-based motor for mitochondrial movement in vertebrate cells. It contains a variable number of IQ domains. Human myo19 contains a motor domain, three IQ motifs, and a short tail. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276846 [Multi-domain]  Cd Length: 658  Bit Score: 381.51  E-value: 2.82e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNL-NLYSEDHINLYHNKHNRlsksrldenshEKLPPHIFAIAEEAYENLL 168
Cdd:cd14880    2 TVLRCLQARYTADTFYTNAGCTLVALNPFKPVpQLYSPELMREYHAAPQP-----------QKLKPHIFTVGEQTYRNVK 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 S--EGKDQSILVTGESGAGKTENTKKILQYLASItSGSPSNIapvSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSS 246
Cdd:cd14880   71 SliEPVNQSIVVSGESGAGKTWTSRCLMKFYAVV-AASPTSW---ESHKIAERIEQRILNSNPVMEAFGNACTLRNNNSS 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    247 RFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRnvKDYKILSNSNQDIi 326
Cdd:cd14880  147 RFGKFIQLQLNRAQQMTGAAVQTYLLEKTRVACQAPSERNFHIFYQICKGASADERLQWHLPEG--AAFSWLPNPERNL- 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    327 pginDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVS--DRAEQASFKND----VSAICSNLGVDEKDFQT 400
Cdd:cd14880  224 ----EEDCFEVTREAMLHLGIDTPTQNNIFKVLAGLLHLGNIQFADseDEAQPCQPMDDtkesVRTSALLLKLPEDHLLE 299
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    401 AiLRPRS-KAGKEWVSQSKNSQQAKFIL--NALSRNLYERLFGYIVDMINKNL--DHGSATlNYIGLLDIAGFEIFENNS 475
Cdd:cd14880  300 T-LQIRTiRAGKQQQVFKKPCSRAECDTrrDCLAKLIYARLFDWLVSVINSSIcaDTDSWT-TFIGLLDVYGFESFPENS 377
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    476 FEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIEskGPPTGVLPLLDEEAVLPKSTDESFY 555
Cdd:cd14880  378 LEQLCINYANEKLQQHFVAHYLRAQQEEYAVEGLEWSFINY-QDNQTCLDLIE--GSPISICSLINEECRLNRPSSAAQL 454
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    556 SKLISTWDQNSSKFKRSRL--KNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPEGEKSSsag 633
Cdd:cd14880  455 QTRIESALAGNPCLGHNKLsrEPSFIVVHYAGPVRYHTAGLVEKNKDPVPPELTRLLQQSQDPLLQKLFPANPEEKT--- 531
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    634 veanisnQEVKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLA 713
Cdd:cd14880  532 -------QEEPSGQSRAPVLTVVSKFKASLEQLLQVLHSTTPHYIRCIKPNSQCQAQTFLQEEVLSQLEACGLVETIHIS 604
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 730092    714 REGYPNRIAFQEFFQRYRILYPensttttfsskLKASTKQNCEFLLTSLQLDTKVYkIGNTKLF 777
Cdd:cd14880  605 AAGFPIRVSHQNFVERYKLLRR-----------LRPHTSSGPHSPYPAKGLSEPVH-CGRTKVF 656
MYSc_Myo45 cd14906
class XLV myosin, motor domain; The class XLVI myosins are comprised of slime molds ...
90-775 3.64e-113

class XLV myosin, motor domain; The class XLVI myosins are comprised of slime molds Dictyostelium and Polysphondylium. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276871 [Multi-domain]  Cd Length: 715  Bit Score: 377.40  E-value: 3.64e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNL-NLYSEDHINLYHnkhnrlsksrlDENSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14906    2 IILNNLGKRYKSDSIYTYIGNVLISINPYKDIsSIYSNLILNEYK-----------DINQNKSPIPHIYAVALRAYQSMV 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASiTSGSPSNiAPVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRF 248
Cdd:cd14906   71 SEKKNQSIIISGESGSGKTEASKTILQYLIN-TSSSNQQ-QNNNNNNNNNSIEKDILTSNPILEAFGNSRTTKNHNSSRF 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    249 GKFIKIEF-NEHGMINGAHIEWYLLEKSRIVHQ-NSKERNYHIFYQLLSGLDDSELKNLRLKSrNVKDYKILsNSNQDII 326
Cdd:cd14906  149 GKFLKIEFrSSDGKIDGASIETYLLEKSRISHRpDNINLSYHIFYYLVYGASKDERSKWGLNN-DPSKYRYL-DARDDVI 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    327 PGIND---------------VENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDR------AEQASFKNDVS 385
Cdd:cd14906  227 SSFKSqssnknsnhnnktesIESFQLLKQSMESMSINKEQCDAIFLSLAAILHLGNIEFEEDSdfskyaYQKDKVTASLE 306
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    386 AICSNLGVDEKDFQTAILRPRSKAGKEW--------VSQSKNSQqakfilNALSRNLYERLFGYIVDMIN---------K 448
Cdd:cd14906  307 SVSKLLGYIESVFKQALLNRNLKAGGRGsvycrpmeVAQSEQTR------DALSKSLYVRLFKYIVEKINrkfnqntqsN 380
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    449 NLDHGSATLN--YIGLLDIAGFEIFENNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDL 526
Cdd:cd14906  381 DLAGGSNKKNnlFIGVLDIFGFENLSSNSLEQLLINFTNEKLQQQFNLNVFENEQKEYLSEGIPWSNSNF-IDNKECIEL 459
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    527 IESKGppTGVLPLLDEEAVLPKSTDESFYSKLISTWDQNSSKFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNL 606
Cdd:cd14906  460 IEKKS--DGILSLLDDECIMPKGSEQSLLEKYNKQYHNTNQYYQRTLAKGTLGIKHFAGDVTYQTDGWLEKNRDSLYSDV 537
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    607 LSLLSSSQNDIISKLFQPEgeksssagvEANISNQEVKKSARTstfkTTSSRHREQQITLLNQLASTHPHFVRCIIPNNV 686
Cdd:cd14906  538 EDLLLASSNFLKKSLFQQQ---------ITSTTNTTKKQTQSN----TVSGQFLEQLNQLIQTINSTSVHYIRCIKPNQT 604
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    687 KKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQEFFQRYRILypenstTTTFSSKLKASTKQNCEFLLTSLQLDT 766
Cdd:cd14906  605 MDCNNFNNVHVLSQLRNVGVLNTIKVRKMGYSYRRDFNQFFSRYKCI------VDMYNRKNNNNPKLASQLILQNIQSKL 678

                 ....*....
gi 730092    767 KVYKIGNTK 775
Cdd:cd14906  679 KTMGISNNK 687
MYSc_Myo13 cd14875
class XIII myosin, motor domain; These myosins have an N-terminal motor domain, a light-chain ...
90-779 5.85e-109

class XIII myosin, motor domain; These myosins have an N-terminal motor domain, a light-chain binding domain, and a C-terminal GPA/Q-rich domain. There is little known about the function of this myosin class. Two of the earliest members identified in this class are green alga Acetabularia cliftonii, Aclmyo1 and Aclmyo2. They are striking with their short tail of Aclmyo1 of 18 residues and the maximum of 7 IQ motifs in Aclmyo2. It is thought that these myosins are involved in organelle transport and tip growth. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276842 [Multi-domain]  Cd Length: 664  Bit Score: 363.36  E-value: 5.85e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYD-CDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNkhnrLSKSRLdenshekLPPHIFAIAEEAYENLL 168
Cdd:cd14875    2 TLLHCIKERFEkLHQQYSLMGEMVLSVNPFRLMPFNSEEERKKYLA----LPDPRL-------LPPHIWQVAHKAFNAIF 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKD-QSILVTGESGAGKTENTKKILQYLASITSGSPSNiapVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSR 247
Cdd:cd14875   71 VQGLGnQSVVISGESGSGKTENAKMLIAYLGQLSYMHSSN---TSQRSIADKIDENLKWSNPVMESFGNARTVRNDNSSR 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    248 FGKFIKIEFNE-HGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNL-RLKSrnVKDYKILSNSNQDI 325
Cdd:cd14875  148 FGKYIKLYFDPtSGVMVGGQTVTYLLEKSRIIMQSPGERNYHIFYEMLAGLSPEEKKELgGLKT--AQDYKCLNGGNTFV 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    326 IPG-----INDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKND--VSAICSNLGVDEKDF 398
Cdd:cd14875  226 RRGvdgktLDDAHEFQNVRHALSMIGVELETQNSIFRVLASILHLMEVEFESDQNDKAQIADEtpFLTACRLLQLDPAKL 305
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    399 QTAILrprSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLN--YIGLLDIAGFEIFENNSF 476
Cdd:cd14875  306 RECFL---VKSKTSLVTILANKTEAEGFRNAFCKAIYVGLFDRLVEFVNASITPQGDCSGckYIGLLDIFGFENFTRNSF 382
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    477 EQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDESFYS 556
Cdd:cd14875  383 EQLCINYANESLQNHYNKYTFINDEEECRREGIQIPKIEF-PDNSECVNMFDQK--RTGIFSMLDEECNFKGGTTERFTT 459
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    557 KLISTWDQNSSKF--KRSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPEgeksssagv 634
Cdd:cd14875  460 NLWDQWANKSPYFvlPKSTIPNQFGVNHYAAFVNYNTDEWLEKNTDALKEDMYECVSNSTDEFIRTLLSTE--------- 530
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    635 eanisnqevKKSARTStfKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAR 714
Cdd:cd14875  531 ---------KGLARRK--QTVAIRFQRQLTDLRTELESTETQFIRCIKPNMEASPSFLDNLLVGSQLESAGVLQTIALKR 599
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 730092    715 EGYPNRIAFQEFFqRYRILYPENSTTTTFssKLKASTKQNCEFLLTSLQL---DTKVYKIGNTKLFFK 779
Cdd:cd14875  600 QGYPVRRPIEQFC-RYFYLIMPRSTASLF--KQEKYSEAAKDFLAYYQRLygwAKPNYAVGKTKVFLR 664
MYSc_Myo25 cd14886
class XXV myosin, motor domain; These myosins are MyTH-FERM myosins that play a role in cell ...
95-779 1.49e-108

class XXV myosin, motor domain; These myosins are MyTH-FERM myosins that play a role in cell adhesion and filopodia formation. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276851  Cd Length: 650  Bit Score: 361.90  E-value: 1.49e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     95 LEKRYDCDLIYTYSGLFLVAINPYHNL-NLYSEDHINLYHNKHNRLSKSrldenshEKLPPHIFAIAEEAYENLLSEGKD 173
Cdd:cd14886    7 LRDRFAKDKIYTYAGKLLVALNPFKQIrNLYGTEVIGRYRQADTSRGFP-------SDLPPHSYAVAQSALNGLISDGIS 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    174 QSILVTGESGAGKTENTKKILQYLAsitsgspsnIAPVSGSSIVESFemkILQSNPILESFGNAQTVRNNNSSRFGKFIK 253
Cdd:cd14886   80 QSCIVSGESGAGKTETAKQLMNFFA---------YGHSTSSTDVQSL---ILGSNPLLESFGNAKTLRNNNSSRFGKFIK 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    254 IEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSrnVKDYKILSNSNQDIIPGINDVE 333
Cdd:cd14886  148 LLVGPDGGLKGGKITSYMLELSRIEFQSTNERNYHIFYQCIKGLSPEEKKSLGFKS--LESYNFLNASKCYDAPGIDDQK 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    334 NFKELLSALNIIgFSKDQIRWIFQVVAIILLIGNIEF------VSDRAEQASFKNDVSAICSNLGVDEKDFQTAILRPRS 407
Cdd:cd14886  226 EFAPVRSQLEKL-FSKNEIDSFYKCISGILLAGNIEFseegdmGVINAAKISNDEDFGKMCELLGIESSKAAQAIITKVV 304
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    408 KAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINYTNEK 487
Cdd:cd14886  305 VINNETIISPVTQAQAEVNIRAVAKDLYGALFELCVDTLNEIIQFDADARPWIGILDIYGFEFFERNTYEQLLINYANER 384
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    488 LQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQltIDLIESKgPPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQNSS 567
Cdd:cd14886  385 LQQYFINQVFKSEIQEYEIEGIDHSMITFTDNSN--VLAVFDK-PNLSIFSFLEEQCLIQTGSSEKFTSSCKSKIKNNSF 461
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    568 -KFKRSRLKngFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpegeksssagvEANISNQEVKKS 646
Cdd:cd14886  462 iPGKGSQCN--FTIVHTAATVTYNTEEFVDKNKHKLSVDILELLMGSTNPIVNKAFS-----------DIPNEDGNMKGK 528
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    647 ARTSTFkttssrhREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQEF 726
Cdd:cd14886  529 FLGSTF-------QLSIDQLMKTLSATKSHFIRCIKTNQDKVPNKYETKSVYNQLISLSIFESIQTIHRGFAYNDTFEEF 601
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|...
gi 730092    727 FQRYRILYPENSTTTTFSSKLKASTKQncefLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14886  602 FHRNKILISHNSSSQNAGEDLVEAVKS----ILENLGIPCSDYRIGKTKVFLR 650
MYSc_Myo16 cd14878
class XVI myosin, motor domain; These XVI type myosins are also known as Neuronal ...
90-779 1.31e-104

class XVI myosin, motor domain; These XVI type myosins are also known as Neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 3/NYAP3. Myo16 is thought to play a regulatory role in cell cycle progression and has been recently implicated in Schizophrenia. Class XVI myosins are characterized by an N-terminal ankyrin repeat domain and some with chitin synthase domains that arose independently from the ones in the class XVII fungal myosins. They bind protein phosphatase 1 catalytic subunits 1alpha/PPP1CA and 1gamma/PPP1CC. Human Myo16 interacts with ACOT9, ARHGAP26 and PIK3R2 and with components of the WAVE1 complex, CYFIP1 and NCKAP1. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276844 [Multi-domain]  Cd Length: 656  Bit Score: 350.65  E-value: 1.31e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHNRLSKSrldenshekLPPHIFAIAEEAYENLLS 169
Cdd:cd14878    2 SLLYEIQKRFGNNQIYTFIGDILLLVNPYKELPIYSTMVSQLYLSSSGQLCSS---------LPPHLFSCAERAFHQLFQ 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSniapvsgssiveSFEMKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd14878   73 ERRPQCFILSGERGSGKTEASKQIMKHLTCRASSSRT------------TFDSRFKHVNCILEAFGHAKTTLNDLSSCFI 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEH-GMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKsrNVKDYKILSNSNQDIIPG 328
Cdd:cd14878  141 KYFELQFCERkKHLTGARIYTYMLEKSRLVSQPPGQSNFLIFYLLMDGLSAEEKYGLHLN--NLCAHRYLNQTMREDVST 218
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 IN---DVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKND---VSAICSNLGVDEKDFQTAI 402
Cdd:cd14878  219 AErslNREKLAVLKQALNVVGFSSLEVENLFVILSAILHLGDIRFTALTEADSAFVSDlqlLEQVAGMLQVSTDELASAL 298
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    403 LRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNY----IGLLDIAGFEIFENNSFEQ 478
Cdd:cd14878  299 TTDIQYFKGDMIIRRHTIQIAEFYRDLLAKSLYSRLFSFLVNTVNCCLQSQDEQKSMqtldIGILDIFGFEEFQKNEFEQ 378
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    479 LCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESKgpPTGVLPLLDEEAVLPKSTDESFYSKL 558
Cdd:cd14878  379 LCVNMTNEKMHHYINEVLFLQEQTECVQEGVTMETAYSPGNQTGVLDFFFQK--PSGFLSLLDEESQMIWSVEPNLPKKL 456
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    559 ISTWDQNSSKFKRSRLKNG------------FILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpeg 626
Cdd:cd14878  457 QSLLESSNTNAVYSPMKDGngnvalkdqgtaFTVMHYAGRVMYEIVGAIEKNKDSLSQNLLFVMKTSENVVINHLFQ--- 533
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    627 eksssagveanisnqevkksartSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGV 706
Cdd:cd14878  534 -----------------------SKLVTIASQLRKSLADIIGKLQKCTPHFIHCIKPNNSKLPDTFDNFYVSAQLQYIGV 590
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 730092    707 LEGIRLAREGYPNRIAFQEFFQRYRILypensTTTTFSSKLKASTKQNCEFLLtsLQLDTKVYKIGNTKLFFK 779
Cdd:cd14878  591 LEMVKIFRYGYPVRLSFSDFLSRYKPL-----ADTLLGEKKKQSAEERCRLVL--QQCKLQGWQMGVRKVFLK 656
MYSc_Myo38 cd14899
class XXXVIII myosin; The class XXXVIII myosins are comprised of Stramenopiles. Not much is ...
90-731 3.27e-104

class XXXVIII myosin; The class XXXVIII myosins are comprised of Stramenopiles. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276864 [Multi-domain]  Cd Length: 717  Bit Score: 351.71  E-value: 3.27e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNL-NLYSEDHINLYHNKHNRLSKSRLdeNSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14899    2 SILNALRLRYERHAIYTHIGDILISINPFQDLpQLYGDEILRGYAYDHNSQFGDRV--TSTDPREPHLFAVARAAYIDIV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLAsITSGSPSNIAPVSGSSIVE------SFEMKILQSNPILESFGNAQTVRN 242
Cdd:cd14899   80 QNGRSQSILISGESGAGKTEATKIIMTYFA-VHCGTGNNNLTNSESISPPaspsrtTIEEQVLQSNPILEAFGNARTVRN 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    243 NNSSRFGKFIKIEF-NEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDD---SELKNLRLKSRNVKDYKIL 318
Cdd:cd14899  159 DNSSRFGKFIELRFrDERRRLAGARIRTYLLEKIRVIKQAPHERNFHIFYELLSADNNcvsKEQKQVLALSGGPQSFRLL 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    319 SNS----NQDiipGINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEF--VSDRAEQASFKNDVSAICSNLG 392
Cdd:cd14899  239 NQSlcskRRD---GVKDGVQFRATKRAMQQLGMSEGEIGGVLEIVAAVLHMGNVDFeqIPHKGDDTVFADEARVMSSTTG 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    393 VDEKDFQTAILRPRSKAG------KEWVSQSKNS-------QQAKFILNALSRNLYERLFGYIVDMIN------------ 447
Cdd:cd14899  316 AFDHFTKAAELLGVSTEAldhaltKRWLHASNETlvvgvdvAHARNTRNALTMECYRLLFEWLVARVNnklqrqasapwg 395
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    448 ---KNLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDlQLTI 524
Cdd:cd14899  396 adeSDVDDEEDATDFIGLLDIFGFEDMAENSFEQLCINYANEALQHQFNQYIFEEEQRLYRDEGIRWSFVDFPNN-RACL 474
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    525 DLIESKgpPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQNSS--KFKRSRL---KNGFILKHYAGDVEYTVEGWLSKNK 599
Cdd:cd14899  475 ELFEHR--PIGIFSLTDQECVFPQGTDRALVAKYYLEFEKKNShpHFRSAPLiqrTTQFVVAHYAGCVTYTIDGFLAKNK 552
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    600 DPLNDNLLSLLSSSQNDIISKLFQPEGEKSSSAGVEANISNQEVKKSARTSTFKTTSSRHREQQIT-LLNQLASTHPHFV 678
Cdd:cd14899  553 DSFCESAAQLLAGSSNPLIQALAAGSNDEDANGDSELDGFGGRTRRRAKSAIAAVSVGTQFKIQLNeLLSTVRATTPRYV 632
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|...
gi 730092    679 RCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQEFFQRYR 731
Cdd:cd14899  633 RCIKPNDSHVGSLFQSTRVVEQLRSGGVLEAVRVARAGFPVRLTHKQFLGRYR 685
MYSc_Myo18 cd01386
class XVIII myosin, motor domain; Many members of this class contain a N-terminal PDZ domain ...
90-779 1.07e-101

class XVIII myosin, motor domain; Many members of this class contain a N-terminal PDZ domain which is commonly found in proteins establishing molecular complexes. The motor domain itself does not exhibit ATPase activity, suggesting that it functions as an actin tether protein. It also has two IQ domains that probably bind light chains or related calmodulins and a C-terminal tail with two sections of coiled-coil domains, which are thought to mediate homodimerization. The function of these myosins are largely unknown. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276837 [Multi-domain]  Cd Length: 689  Bit Score: 343.14  E-value: 1.07e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKhnrlsksRLDEnshekLPPHIFAIAEEAYENLLS 169
Cdd:cd01386    2 SVLHTLRQRYGANLIHTYAGPSLIVINPRHPLAVYSEKVAKMFKGC-------RRED-----MPPHIYASAQSAYRAMLM 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASItSGSpsniapVSGSSIVEsfemKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd01386   70 SRRDQSIVLLGRSGSGKTTNCRHILEYLVTA-AGS------VGGVLSVE----KLNAALTVLEAFGNVRTALNGNATRFS 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSrnvkdykILSNSNQDIIPGI 329
Cdd:cd01386  139 QLFSLDFDQAGQLASASIQTLLLERSRVARRPEGESNFNVFYYLLAGADAALRTELHLNQ-------LAESNSFGIVPLQ 211
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    330 NDVE------NFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVsdRAEQASFKNDVSAICSN-----LGVDEKDF 398
Cdd:cd01386  212 KPEDkqkaaaAFSKLQAAMKTLGISEEEQRAIWSILAAIYHLGAAGAT--KAASAGRKQFARPEWAQraaylLGCTLEEL 289
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    399 QTAILRP------------RSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIA 466
Cdd:cd01386  290 SSAIFKHhlsggpqqsttsSGQESPARSSSGGPKLTGVEALEGFAAGLYSELFAAVVSLINRSLSSSHHSTSSITIVDTP 369
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    467 GFEIFE------NNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIEsKGPPTGVLP-- 538
Cdd:cd01386  370 GFQNPAhsgsqrGATFEDLCHNYAQERLQLLFHERTFVAPLERYKQENVEVDFDLPELSPGALVALID-QAPQQALVRsd 448
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    539 -----------LLDEEAVLPKSTDESFYSKL-----ISTWDQNSSKFKRSRLKNGFILKHYAG--DVEYTVEGWLSKNKD 600
Cdd:cd01386  449 lrdedrrgllwLLDEEALYPGSSDDTFLERLfshygDKEGGKGHSLLRRSEGPLQFVLGHLLGtnPVEYDVSGWLKAAKE 528
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    601 PLndnllsllsSSQNDIisKLFQpegekSSSAGVEAnisnqeVKKSARTSTFKTTSSrhreqqiTLLNQLASTHPHFVRC 680
Cdd:cd01386  529 NP---------SAQNAT--QLLQ-----ESQKETAA------VKRKSPCLQIKFQVD-------ALIDTLRRTGLHFVHC 579
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    681 IIPNNVKKVKT------------FNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQEFFQRYRILYPENSTTTTFSSKLk 748
Cdd:cd01386  580 LLPQHNAGKDErstsspaagdelLDVPLLRSQLRGSQLLDALRLYRQGFPDHMPLGEFRRRFQVLAPPLTKKLGLNSEV- 658
                        730       740       750
                 ....*....|....*....|....*....|.
gi 730092    749 ASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd01386  659 ADERKAVEELLEELDLEKSSYRIGLSQVFFR 689
MYSc_Myo37 cd14898
class XXXVII myosin, motor domain; The class XXXVIII myosins are comprised of fungi. Not much ...
90-735 2.64e-100

class XXXVII myosin, motor domain; The class XXXVIII myosins are comprised of fungi. Not much is known about this myosin class. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276863  Cd Length: 578  Bit Score: 335.71  E-value: 2.64e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHNRlsksrldensheklpPHIFAIAEEAYENLLS 169
Cdd:cd14898    2 ATLEILEKRYASGKIYTKSGLVFLALNPYETIYGAGAMKAYLKNYSHVE---------------PHVYDVAEASVQDLLV 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGkDQSILVTGESGAGKTENTKKILQYLASITSGSpsniapvsgssivESFEMKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd14898   67 HG-NQTIVISGESGSGKTENAKLVIKYLVERTAST-------------TSIEKLITAANLILEAFGNAKTQLNDNSSRFG 132
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNehGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGlddselKNLRLKSrnvkDYKILSNSNQDIIPGI 329
Cdd:cd14898  133 KRIKLKFD--GKITGAKFETYLLEKSRVTHHEKGERNFHIFYQFCAS------KRLNIKN----DFIDTSSTAGNKESIV 200
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    330 NDVENFKELLSALNIIGFSKdqIRWIFQVVAIILLIGNIEFVSDRAEQASFKNDVSAICSNLGVDEKDFQTAILRPRSKA 409
Cdd:cd14898  201 QLSEKYKMTCSAMKSLGIAN--FKSIEDCLLGILYLGSIQFVNDGILKLQRNESFTEFCKLHNIQEEDFEESLVKFSIQV 278
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    410 GKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDhGSATLNyIGLLDIAGFEIFENNSFEQLCINYTNEKLQ 489
Cdd:cd14898  279 KGETIEVFNTLKQARTIRNSMARLLYSNVFNYITASINNCLE-GSGERS-ISVLDIFGFEIFESNGLDQLCINWTNEKIQ 356
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    490 QFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIEskgpPTGVLPLLDEEAVLPKSTDESFYSKLISTwdqnSSKF 569
Cdd:cd14898  357 NDFIKKMFRAKQGMYKEEGIEWPDVEFFDNNQCIRDFEK----PCGLMDLISEESFNAWGNVKNLLVKIKKY----LNGF 428
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    570 KRSRLKNGFILKHYAGDVEYTVEGWLSKNKdplndnllsllsssqndiisklfqpegEKSSSAGVEANISNQEVKKSART 649
Cdd:cd14898  429 INTKARDKIKVSHYAGDVEYDLRDFLDKNR---------------------------EKGQLLIFKNLLINDEGSKEDLV 481
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    650 STFKTTSSRhreqqitLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQEFFQR 729
Cdd:cd14898  482 KYFKDSMNK-------LLNSINETQAKYIKCIRPNEECRPWCFDRDLVSKQLAECGILETIRLSKQCFPQEIPKDRFEER 554

                 ....*.
gi 730092    730 YRILYP 735
Cdd:cd14898  555 YRILGI 560
MYSc_Myo17 cd14879
class XVII myosin, motor domain; This fungal myosin which is also known as chitin synthase ...
95-778 2.04e-96

class XVII myosin, motor domain; This fungal myosin which is also known as chitin synthase uses its motor domain to tether its vesicular cargo to peripheral actin. It works in opposition to dynein, contributing to the retention of Mcs1 vesicles at the site of cell growth and increasing vesicle fusion necessary for polarized growth. Class 17 myosins consist of a N-terminal myosin motor domain with Cyt-b5, chitin synthase 2, and a DEK_C domains at it C-terminus. The chitin synthase region contains several transmembrane domains by which myosin 17 is thought to bind secretory vesicles. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276845 [Multi-domain]  Cd Length: 647  Bit Score: 326.43  E-value: 2.04e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     95 LEKRYDCDLIYTYSGLF-LVAINPYHNLNLYSEDHINLYhnkhnrlsKSRLDENSHEK---LPPHIFAIAEEAYENLLSE 170
Cdd:cd14879   10 LASRFRSDLPYTRLGSSaLVAVNPYKYLSSNSDASLGEY--------GSEYYDTTSGSkepLPPHAYDLAARAYLRMRRR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    171 GKDQSILVTGESGAGKTENTKKILQYLASITSGSPSniapvsGSSIVEsfemKILQSNPILESFGNAQTVRNNNSSRFGK 250
Cdd:cd14879   82 SEDQAVVFLGETGSGKSESRRLLLRQLLRLSSHSKK------GTKLSS----QISAAEFVLDSFGNAKTLTNPNASRFGR 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    251 FIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLksRNVKDYKILSNSNQ---DIIP 327
Cdd:cd14879  152 YTELQFNERGRLIGAKVLDYRLERSRVASVPTGERNFHVFYYLLAGASPEERQHLGL--DDPSDYALLASYGChplPLGP 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    328 GINDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDR---AEQASFKN-DVSAICSN-LGVDEKDFQTAi 402
Cdd:cd14879  230 GSDDAEGFQELKTALKTLGFKRKHVAQICQLLAAILHLGNLEFTYDHeggEESAVVKNtDVLDIVAAfLGVSPEDLETS- 308
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    403 LRPRSK-AGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNL-DHGSATLNYIGLLDIAGFEIF---ENNSFE 477
Cdd:cd14879  309 LTYKTKlVRKELCTVFLDPEGAAAQRDELARTLYSLLFAWVVETINQKLcAPEDDFATFISLLDFPGFQNRsstGGNSLD 388
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    478 QLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQW---DYIDYGKDLQLTidliesKGPPTGVLPLLDEEA-VLPKSTDES 553
Cdd:cd14879  389 QFCVNFANERLHNYVLRSFFERKAEELEAEGVSVpatSYFDNSDCVRLL------RGKPGGLLGILDDQTrRMPKKTDEQ 462
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    554 FYSKLISTWDQNSS-----KFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNdnllsllsssqNDIISkLFQPEGEK 628
Cdd:cd14879  463 MLEALRKRFGNHSSfiavgNFATRSGSASFTVNHYAGEVTYSVEGFLERNGDVLS-----------PDFVN-LLRGATQL 530
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    629 SSSagveanISnqevkksartstfkttssrhreqqiTLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLE 708
Cdd:cd14879  531 NAA------LS-------------------------ELLDTLDRTRLWSVFCIRPNDSQLPNSFDKRRVKAQIRSLGLPE 579
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    709 GIRLAREGYPNRIAFQEFFQRYrilypeNSTTTTFSSKLKAstkqncEFLLTSLQLDTKVYKIGNTKLFF 778
Cdd:cd14879  580 LAARLRVEYVVSLEHAEFCERY------KSTLRGSAAERIR------QCARANGWWEGRDYVLGNTKVFL 637
MYSc_Myo26 cd14887
class XXVI myosin, motor domain; These MyTH-FERM myosins are thought to be related to the ...
89-779 1.29e-94

class XXVI myosin, motor domain; These MyTH-FERM myosins are thought to be related to the other myosins that have a MyTH4 domain such as class III, VII, IX, X , XV, XVI, XVII, XX, XXII, XXV, and XXXIV. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276852  Cd Length: 725  Bit Score: 323.91  E-value: 1.29e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRY--------DCDLIYTYSGLFLVAINPYHNLNLYSEDHInlyhnkhnrlskSRLDENSHEKLPPHIFAIA 160
Cdd:cd14887    1 PNLLENLYQRYnkayinkeNRNCIYTYTGTLLIAVNPYRFFNLYDRQWI------------SRFDTEANSRLVPHPFGLA 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    161 EEAYENLLSEGKDQSILVTGESGAGKTENTKKILQYLASIT---SGSPSniapvsgssivESFEMKILQSNPILESFGNA 237
Cdd:cd14887   69 EFAYCRLVRDRRSQSILISGESGAGKTETSKHVLTYLAAVSdrrHGADS-----------QGLEARLLQSGPVLEAFGNA 137
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    238 QTVRNNNSSRFGKFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLddselknlrlksrnvkdyki 317
Cdd:cd14887  138 HTVLNANSSRFGKMLLLHFTGRGKLTRASVATYLLANERVVRIPSDEFSFHIFYALCNAA-------------------- 197
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    318 LSNSNQDIIPGINDVE--NFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKNDVSAI-------- 387
Cdd:cd14887  198 VAAATQKSSAGEGDPEstDLRRITAAMKTVGIGGGEQADIFKLLAAILHLGNVEFTTDQEPETSKKRKLTSVsvgceeta 277
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    388 ------------CSNLGVDE------KDFQTAILRPRSKAGKEW---------VSQSKNS---QQAKFILNALSRNLYER 437
Cdd:cd14887  278 adrshssevkclSSGLKVTEasrkhlKTVARLLGLPPGVEGEEMlrlalvsrsVRETRSFfdlDGAAAARDAACKNLYSR 357
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    438 LFGYIVDMINKNLDHG--------------SATLNYIGLLDIAGFEIFEN---NSFEQLCINYTNEKLQQFFNNHMFVLE 500
Cdd:cd14887  358 AFDAVVARINAGLQRSakpsesdsdedtpsTTGTQTIGILDLFGFEDLRNhskNRLEQLCINYANERLHCFLLEQLILNE 437
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    501 QSEYLKENIQWDYIDYGKDLQLTIDLIESKGP-------PTGVLPLLDEEAVLPK-----STDESFYSKLISTWD----- 563
Cdd:cd14887  438 HMLYTQEGVFQNQDCSAFPFSFPLASTLTSSPsstspfsPTPSFRSSSAFATSPSlpsslSSLSSSLSSSPPVWEgrdns 517
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    564 -----------QNSSKFKR-----SRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNllsllsssqndiISKLFQpege 627
Cdd:cd14887  518 dlfyeklnkniINSAKYKNitpalSRENLEFTVSHFACDVTYDARDFCRANREATSDE------------LERLFL---- 581
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    628 kSSSAGVEANISNQEVKKSARTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVL 707
Cdd:cd14887  582 -ACSTYTRLVGSKKNSGVRAISSRRSTLSAQFASQLQQVLKALQETSCHFIRCVKPNRVQEAGIFEDAYVHRQLRCSGMS 660
                        730       740       750       760       770       780       790
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 730092    708 EGIRLAREGYPNRIAFQEFFQRYRILYPEnsttttfSSKLKASTKQNCEFLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14887  661 DLLRVMADGFPCRLPYVELWRRYETKLPM-------ALREALTPKMFCKIVLMFLEINSNSYTFGKTKIFFR 725
MYSc_Myo24A cd14937
class XXIV A myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a ...
91-779 5.33e-81

class XXIV A myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a coiled-coil region in their C-terminal tail. The function of the class XXIV myosins remain elusive. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276897  Cd Length: 637  Bit Score: 281.13  E-value: 5.33e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     91 VLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLysedHINLYHNKhnrlsksrldenSHEKLPPHIFAIAEEAYENLLSE 170
Cdd:cd14937    3 VLNMLALRYKKNYIYTIAEPMLISINPYQVIDV----DINEYKNK------------NTNELPPHVYSYAKDAMTDFINT 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    171 GKDQSILVTGESGAGKTENTKKILQYLasitsgspsniapVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRFGK 250
Cdd:cd14937   67 KTNQSIIISGESGSGKTEASKLVIKYY-------------LSGVKEDNEISNTLWDSNFILEAFGNAKTLKNNNSSRYGK 133
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    251 FIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDsELKNlRLKSRNVKDYKILSNSNQdIIPGIN 330
Cdd:cd14937  134 YIKIELDEYQNIVSSSIEIFLLENIRVVSQEEEERGYHIFYQIFNGMSQ-ELKN-KYKIRSENEYKYIVNKNV-VIPEID 210
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    331 DVENFKELLSALNIIGFSkDQIRWIFQVVAIILLIGNIEFvsDRAEQASFKN----------DVSAICSNLGVDEKDFQT 400
Cdd:cd14937  211 DAKDFGNLMISFDKMNMH-DMKDDLFLTLSGLLLLGNVEY--QEIEKGGKTNcseldknnleLVNEISNLLGINYENLKD 287
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    401 AILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATLNYIGLLDIAGFEIFENNSFEQLC 480
Cdd:cd14937  288 CLVFTEKTIANQKIEIPLSVEESVSICKSISKDLYNKIFSYITKRINNFLNNNKELNNYIGILDIFGFEIFSKNSLEQLL 367
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    481 INYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDlQLTIDLIESKgppTGVLPLLDEEAVLPKSTDESFYSKLIS 560
Cdd:cd14937  368 INIANEEIHSIYLYIVYEKETELYKAEDILIESVKYTTN-ESIIDLLRGK---TSIISILEDSCLGPVKNDESIVSVYTN 443
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    561 TWDQNS--SKFKRSRLKNgFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQpEGEKSSSAGVEANI 638
Cdd:cd14937  444 KFSKHEkyASTKKDINKN-FVIKHTVSDVTYTITNFISKNKDILPSNIVRLLKVSNNKLVRSLYE-DVEVSESLGRKNLI 521
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    639 snqevkksartsTFKttssrHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAReGYP 718
Cdd:cd14937  522 ------------TFK-----YLKNLNNIISYLKSTNIYFIKCIKPNENKEKNNFNQKKVFPQLFSLSIIETLNISF-FFQ 583
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092    719 NRIAFQEFFQRYRILYPENSTTTTFSSKLKAStkqncefLLTSLQLDTKVYKIGNTKLFFK 779
Cdd:cd14937  584 YKYTFDVFLSYFEYLDYSTSKDSSLTDKEKVS-------MILQNTVDPDLYKVGKTMVFLK 637
MYSc_Myo23 cd14884
class XXIII myosin, motor domain; These myosins are predicted to have a neck region with 1-2 ...
89-725 3.82e-80

class XXIII myosin, motor domain; These myosins are predicted to have a neck region with 1-2 IQ motifs and a single MyTH4 domain in its C-terminal tail. The lack of a FERM domain here is odd since MyTH4 domains are usually found alongside FERM domains where they bind to microtubules. At any rate these Class XXIII myosins are still proposed to function in the apicomplexan microtubule cytoskeleton. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276850 [Multi-domain]  Cd Length: 685  Bit Score: 280.25  E-value: 3.82e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNL-NLYSEDHINLYHNKhnrLSKSRLDENSHekLPPHIFAIAEEAYENL 167
Cdd:cd14884    1 PNVLQNLKNRYLKNKIYTFHASLLLALNPYKPLkELYDQDVMNVYLHK---KSNSAASAAPF--PKAHIYDIANMAYKNM 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    168 LSEGKDQSILVTGESGAGKTENTKKILQYLASItsgspsniapvSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSR 247
Cdd:cd14884   76 RGKLKRQTIVVSGHSGSGKTENCKFLFKYFHYI-----------QTDSQMTERIDKLIYINNILESMSNATTIKNNNSSR 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    248 FGKFIKIEFNE---------HGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLkSRNVKDYKIL 318
Cdd:cd14884  145 CGRINLLIFEEventqknmfNGCFRNIKIKILLLEINRCIAHNFGERNFHVFYQVLRGLSDEDLARRNL-VRNCGVYGLL 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    319 SN---------SNQDIIPGIN----------DVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFvsdraeqas 379
Cdd:cd14884  224 NPdeshqkrsvKGTLRLGSDSldpseeekakDEKNFVALLHGLHYIKYDERQINEFFDIIAGILHLGNRAY--------- 294
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    380 fkndvSAICSNLGVDEKDFQTAILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNL--------- 450
Cdd:cd14884  295 -----KAAAECLQIEEEDLENVIKYKNIRVSHEVIRTERRKENATSTRDTLIKFIYKKLFNKIIEDINRNVlkckekdes 369
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    451 ---DHGSATLNYIGLLDIAGFEIFENNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQW--DYIDYGKDLQLTID 525
Cdd:cd14884  370 dneDIYSINEAIISILDIYGFEELSGNDFDQLCINLANEKLNNYYINNEIEKEKRIYARENIICcsDVAPSYSDTLIFIA 449
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    526 LIESKgpptgvlplLDEEAVLP----KSTDESFYSKL-----------------ISTWDQNSSKFKRSRLKNGFILKHYA 584
Cdd:cd14884  450 KIFRR---------LDDITKLKnqgqKKTDDHFFRYLlnnerqqqlegkvsygfVLNHDADGTAKKQNIKKNIFFIRHYA 520
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    585 GDVEYTVEGWLSKNKDPLndnllsllsssQNDIisklfqpEGEKSSSAGVEANISNQEVKKsartSTFKTTSSRHREQQI 664
Cdd:cd14884  521 GLVTYRINNWIDKNSDKI-----------ETSI-------ETLISCSSNRFLREANNGGNK----GNFLSVSKKYIKELD 578
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092    665 TLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQE 725
Cdd:cd14884  579 NLFTQLQSTDMYYIRCFLPNAKMLPNTFKRLLVYRQLKQCGSNEMIKILNRGLSHKIPKKE 639
MYSc_Myo32 cd14893
class XXXII myosin, motor domain; Class XXXII myosins do not contain any IQ motifs, but ...
92-731 3.07e-79

class XXXII myosin, motor domain; Class XXXII myosins do not contain any IQ motifs, but possess tandem MyTH4 and FERM domains. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276858  Cd Length: 741  Bit Score: 279.16  E-value: 3.07e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     92 LYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHNRLSKSRLDenSHEKLPPHIFAIAEEAYENLLSEG 171
Cdd:cd14893    4 LYTLRARYRMEQVYTWVDRVLVGVNPVTPLPIYTPDHMQAYNKSREQTPLYEKD--TVNDAPPHVFALAQNALRCMQDAG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    172 KDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSIVESFEMKILQSNPILESFGNAQTVRNNNSSRFGKF 251
Cdd:cd14893   82 EDQAVILLGGMGAGKSEAAKLIVQYLCEIGDETEPRPDSEGASGVLHPIGQQILHAFTILEAFGNAATRQNRNSSRFAKM 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    252 IKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLD-DSELKNLRLKSRNVKDYKILSNSNQDIIPGIN 330
Cdd:cd14893  162 ISVEFSKHGHVIGGGFTTHYFEKSRVIDCRSHERNFHVFYQVLAGVQhDPTLRDSLEMNKCVNEFVMLKQADPLATNFAL 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    331 DVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSD----RAEQASFKNDVSAICSNLGVDEK---------D 397
Cdd:cd14893  242 DARDYRDLMSSFSALRIRKNQRVEIVRIVAALLHLGNVDFVPDpeggKSVGGANSTTVSDAQSCALKDPAqillaakllE 321
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    398 FQTAIL----RPR---SKAGKEWVSQSK--NSQQAKFILNALSRNLYERLFGYIVDMINKNL-------DHGSATLNYIG 461
Cdd:cd14893  322 VEPVVLdnyfRTRqffSKDGNKTVSSLKvvTVHQARKARDTFVRSLYESLFNFLVETLNGILggifdryEKSNIVINSQG 401
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    462 --LLDIAGFEIFEN--NSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWD-------YIDYGKDLQLTIDLIESk 530
Cdd:cd14893  402 vhVLDMVGFENLTPsqNSFDQLCFNYWSEKVHHFYVQNTLAINFSFLEDESQQVEnrltvnsNVDITSEQEKCLQLFED- 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    531 gPPTGVLPLLDEEAVLPKSTDESFYSKLISTWDQ--------NSSKFKRSRLKNG------FILKHYAGDVEYTVEGWLS 596
Cdd:cd14893  481 -KPFGIFDLLTENCKVRLPNDEDFVNKLFSGNEAvgglsrpnMGADTTNEYLAPSkdwrllFIVQHHCGKVTYNGKGLSS 559
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    597 KNKDPLNDNLLSLLSSSQNDIISKLfqpeGEKSSSAGVEANISNQEVKKSARTSTFKTTSSRHRE--------------Q 662
Cdd:cd14893  560 KNMLSISSTCAAIMQSSKNAVLHAV----GAAQMAAASSEKAAKQTEERGSTSSKFRKSASSAREsknitdsaatdvynQ 635
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 730092    663 QITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQEFFQRYR 731
Cdd:cd14893  636 ADALLHALNHTGKNFLVCIKPNETLEEGVFDSAYVMKQIRMNHLVELMQASRSIFTVHLTYGHFFRRYK 704
MYSc_Myo44 cd14905
class XLIV myosin, motor domain; There is little known about the function of the myosin XLIV ...
95-779 1.16e-74

class XLIV myosin, motor domain; There is little known about the function of the myosin XLIV class. Members here include cellular slime mold Polysphondylium and soil-living amoeba Dictyostelium. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276870  Cd Length: 673  Bit Score: 263.88  E-value: 1.16e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     95 LEKRYDCDLIYTYSGLFLVAINPYHNLN-LYSEDHINLYhnkhnrlsksrldeNSHEKLPPHIFAIAEEAYENLLSEGKD 173
Cdd:cd14905    7 IQARYKKEIIYTYIGPILVSVNPLRYLPfLHSQELVRNY--------------NQRRGLPPHLFALAAKAISDMQDFRRD 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    174 QSILVTGESGAGKTENTKKILQYLASitsgspsniAPVSGSSIVESFemkILQSNPILESFGNAQTVRNNNSSRFGKFIK 253
Cdd:cd14905   73 QLIFIGGESGSGKSENTKIIIQYLLT---------TDLSRSKYLRDY---ILESGIILESFGHASTDSNHNSSRWGKYFE 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    254 IEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKsrNVKDYKILSNSNQDIIPGINDVE 333
Cdd:cd14905  141 MFYSLYGEIQGAKLYSYFLDENRVTYQNKGERNFHIFYQFLKGITDEEKAAYQLG--DINSYHYLNQGGSISVESIDDNR 218
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    334 NFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAE-QASFKNDVSAICSNLGVDEKDFQTAILRPRSKAGKE 412
Cdd:cd14905  219 VFDRLKMSFVFFDFPSEKIDLIFKTLSFIIILGNVTFFQKNGKtEVKDRTLIESLSHNITFDSTKLENILISDRSMPVNE 298
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    413 WVSQSknsqqakfilNALSRNLYERLFGYIVDMINKNLDHGSATlNYIGLLDIAGFEIFENNSFEQLCINYTNEKLQQFF 492
Cdd:cd14905  299 AVENR----------DSLARSLYSALFHWIIDFLNSKLKPTQYS-HTLGILDLFGQESSQLNGYEQFSINFLEERLQQIY 367
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    493 NNHMFVLEQSEYLKENIQWDYIDYGKDLQLTIDLIESkgpptgVLPLLDEEAVLPKSTDESFYSKLISTWDQNSSKFKRS 572
Cdd:cd14905  368 LQTVLKQEQREYQTERIPWMTPISFKDNEESVEMMEK------IINLLDQESKNINSSDQIFLEKLQNFLSRHHLFGKKP 441
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    573 rlkNGFILKHYAGDVEYTVEGWLSKNKDPLndnLLSLLSSSQNDIISKLFQPEGEKSSSAGVEANISNQEVKKSART--- 649
Cdd:cd14905  442 ---NKFGIEHYFGQFYYDVRGFIIKNRDEI---LQRTNVLHKNSITKYLFSRDGVFNINATVAELNQMFDAKNTAKKspl 515
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    650 -----------------------------------------STFKTTSSRHREqqitlLNQlASTHPHFVRCIIPNNVKK 688
Cdd:cd14905  516 sivkvllscgsnnpnnvnnpnnnsgggggggnsgggsgsggSTYTTYSSTNKA-----INN-SNCDFHFIRCIKPNSKKT 589
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    689 VKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQEFFQRYRILYPENSTTTTFSSKLKASTKQNCEFLLTSLQldtkv 768
Cdd:cd14905  590 HLTFDVKSVNEQIKSLCLLETTRIQRFGYTIHYNNKIFFDRFSFFFQNQRNFQNLFEKLKENDINIDSILPPPIQ----- 664
                        730
                 ....*....|.
gi 730092    769 ykIGNTKLFFK 779
Cdd:cd14905  665 --VGNTKIFLR 673
MYSc_Myo20 cd14881
class XX myosin, motor domain; These class 20 myosins are primarily insect myosins with such ...
90-738 8.62e-74

class XX myosin, motor domain; These class 20 myosins are primarily insect myosins with such members as Drosophila, Daphnia, and mosquitoes. These myosins contain a single IQ motif in the neck region. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276847 [Multi-domain]  Cd Length: 633  Bit Score: 260.05  E-value: 8.62e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHN----LNLYSEDHINLYhnkhnrlsksrldensheklpPHIFAIAEEAYE 165
Cdd:cd14881    2 AVMKCLQARFYAKEFFTNVGPILLSVNPYRDvgnpLTLTSTRSSPLA---------------------PQLLKVVQEAVR 60
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    166 NLLSEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIApvsgssivesfeMKILQSN-PILESFGNAQTVRNNN 244
Cdd:cd14881   61 QQSETGYPQAIILSGTSGSGKTYASMLLLRQLFDVAGGGPETDA------------FKHLAAAfTVLRSLGSAKTATNSE 128
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    245 SSRFGKFIKIEFNEhGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRNVKDYKILSNSN-- 322
Cdd:cd14881  129 SSRIGHFIEVQVTD-GALYRTKIHCYFLDQTRVIRPLPGEKNYHIFYQMLAGLSQEERVKLHLDGYSPANLRYLSHGDtr 207
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    323 QDIIPGINDVENFKELLSALNiIGFSkDQIRwifqVVAIILLIGNIEFVSDRAEQASFK--NDVSAICSNLGVDEKD-FQ 399
Cdd:cd14881  208 QNEAEDAARFQAWKACLGILG-IPFL-DVVR----VLAAVLLLGNVQFIDGGGLEVDVKgeTELKSVAALLGVSGAAlFR 281
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    400 TAILRPRSkAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGS-----ATLNYIGLLDIAGFEIFENN 474
Cdd:cd14881  282 GLTTRTHN-ARGQLVKSVCDANMSNMTRDALAKALYCRTVATIVRRANSLKRLGStlgthATDGFIGILDMFGFEDPKPS 360
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    475 SFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDY-IDYgKDLQLTIDLIESKgpPTGVLPLLDEEAVlPKSTDES 553
Cdd:cd14881  361 QLEHLCINLCAETMQHFYNTHIFKSSIESCRDEGIQCEVeVDY-VDNVPCIDLISSL--RTGLLSMLDVECS-PRGTAES 436
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    554 FYSKlISTWDQNSSKFKRSRLKNG--FILKHYAGDVEYTVEGWLSKNKDPLNDnllsllsssqnDIISKLFQpegeKSSS 631
Cdd:cd14881  437 YVAK-IKVQHRQNPRLFEAKPQDDrmFGIRHFAGRVVYDASDFLDTNRDVVPD-----------DLVAVFYK----QNCN 500
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    632 AGveanisnqevkksartstFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIR 711
Cdd:cd14881  501 FG------------------FATHTQDFHTRLDNLLRTLVHARPHFVRCIRSNTTETPNHFDRGTVVRQIRSLQVLETVN 562
                        650       660
                 ....*....|....*....|....*..
gi 730092    712 LAREGYPNRIAFQEFFQRYRILYPENS 738
Cdd:cd14881  563 LMAGGYPHRMRFKAFNARYRLLAPFRL 589
MYSc_Myo12 cd14874
class XXXIII myosin, motor domain; Little is known about the XXXIII class of myosins. They ...
91-735 5.24e-70

class XXXIII myosin, motor domain; Little is known about the XXXIII class of myosins. They are found predominately in nematodes. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276841 [Multi-domain]  Cd Length: 628  Bit Score: 248.63  E-value: 5.24e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     91 VLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHnkhnrlsksrldensheklpphIFAIAEEAYENLLS- 169
Cdd:cd14874    3 IAQNLHERFKKGQTYTKASNVLVFVNDFNKLSIQDQLVIKKCH----------------------ISGVAENALDRIKSm 60
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLasiTSGSPSNIAPVSGSSIvesfemkilqsNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd14874   61 SSNAESIVFGGESGSGKSYNAFQVFKYL---TSQPKSKVTTKHSSAI-----------ESVFKSFGCAKTLKNDEATRFG 126
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEHgMINGAHIEWYL-LEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKSRNVKDYKILSNSNQDIIpg 328
Cdd:cd14874  127 CSIDLLYKRN-VLTGLNLKYTVpLEVPRVISQKPGERNFNVFYEVYHGLNDEMKAKFGIKGLQKFFYINQGNSTENIQ-- 203
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    329 iNDVENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRaeQASFKNDVSAICSNLGVD------EKDFQ--T 400
Cdd:cd14874  204 -SDVNHFKHLEDALHVLGFSDDHCISIYKIISTILHIGNIYFRTKR--NPNVEQDVVEIGNMSEVKwvafllEVDFDqlV 280
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    401 AILRPRSKAGkewvsQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATlNYIGLLDIAGFEIFENNSFEQLC 480
Cdd:cd14874  281 NFLLPKSEDG-----TTIDLNAALDNRDSFAMLIYEELFKWVLNRIGLHLKCPLHT-GVISILDHYGFEKYNNNGVEEFL 354
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    481 INYTNEKLQQFFNNHMFVLEQSEYLKENIQWDY-----IDYGKdlqlTIDLIESKgpPTGVLPLLDEEAVLPKSTDESFY 555
Cdd:cd14874  355 INSVNERIENLFVKHSFHDQLVDYAKDGISVDYkvpnsIENGK----TVELLFKK--PYGLLPLLTDECKFPKGSHESYL 428
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    556 SKL-ISTWDQNSSKFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFQPEGEKSSSAGV 634
Cdd:cd14874  429 EHCnLNHTDRSSYGKARNKERLEFGVRHCIGTTWYNVTDFFSRNKRIISLSAVQLLRSSKNPIIGLLFESYSSNTSDMIV 508
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    635 EaniSNQEVKKSARtstfkttssrhreqqiTLLNQLASTHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAR 714
Cdd:cd14874  509 S---QAQFILRGAQ----------------EIADKINGSHAHFVRCIKSNNERQPKKFDIPLVNRQIKNLLLAELLSFRI 569
                        650       660
                 ....*....|....*....|.
gi 730092    715 EGYPNRIAFQEFFQRYRILYP 735
Cdd:cd14874  570 KGYPVKISKTTFARQYRCLLP 590
MYSc_Myo21 cd14882
class XXI myosin, motor domain; The myosins here are comprised of insects. Leishmania class ...
90-779 3.40e-69

class XXI myosin, motor domain; The myosins here are comprised of insects. Leishmania class XXI myosins do not group with them. Myo21, unlike other myosin proteins, contains UBA-like protein domains and has no structural or functional relationship with the myosins present in other organisms possessing cilia or flagella. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. They have diverse tails with IQ, WW, PX, and Tub domains. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276848  Cd Length: 642  Bit Score: 246.58  E-value: 3.40e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     90 SVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHinlyHNKHNrlSKSRLDENsheklpPHIFAIAEEAYENLLS 169
Cdd:cd14882    2 NILEELRHRYLMGESYTFIGDILLSLNPNEIKQEYPQEF----HAKYR--CKSRSDNA------PHIFSVADSAYQDMLH 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    170 EGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNiapvsgssivesfEMKILQSNPILESFGNAQTVRNNNSSRFG 249
Cdd:cd14882   70 HEEPQHIILSGESYSGKTTNARLLIKHLCYLGDGNRGA-------------TGRVESSIKAILALVNAGTPLNADSTRCI 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    250 KFIKIEFNEHGMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSE-LKNLRLKS-RNVKDYKILSNSNQDIIP 327
Cdd:cd14882  137 LQYQLTFGSTGKMSGAIFWMYQLEKLRVSTTDGNQSNFHIFYYFYDFIEAQNrLKEYNLKAgRNYRYLRIPPEVPPSKLK 216
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    328 GIND-----VENFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKNDV-SAICSNLGVDEKDFQTA 401
Cdd:cd14882  217 YRRDdpegnVERYKEFEEILKDLDFNEEQLETVRKVLAAILNLGEIRFRQNGGYAELENTEIaSRVAELLRLDEKKFMWA 296
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    402 ILRPRSKAGKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMINKNLDHGSATL---NYIGLLDIAGFEIFENNSFEQ 478
Cdd:cd14882  297 LTNYCLIKGGSAERRKHTTEEARDARDVLASTLYSRLVDWIINRINMKMSFPRAVFgdkYSISIHDMFGFECFHRNRLEQ 376
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    479 LCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYgKDLQLTIDLIESKgpPTGVLPLLDEEAvlpKSTDESFYskL 558
Cdd:cd14882  377 LMVNTLNEQMQYHYNQRIFISEMLEMEEEDIPTINLRF-YDNKTAVDQLMTK--PDGLFYIIDDAS---RSCQDQNY--I 448
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    559 ISTWDQNSSKFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQNDIISKLFqpegeksssagveani 638
Cdd:cd14882  449 MDRIKEKHSQFVKKHSAHEFSVAHYTGRIIYDAREFADKNRDFVPPEMIETMRSSLDESVKLMF---------------- 512
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    639 SNQEVKKsartstFKTTSSRHREQQITLLNQLA----STHPHFVRCIIPNNVKKVKTFNRRLILDQLRCNGVLEGIRLAR 714
Cdd:cd14882  513 TNSQVRN------MRTLAATFRATSLELLKMLSiganSGGTHFVRCIRSDLEYKPRGFHSEVVRQQMRALAVLDTAKARQ 586
                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 730092    715 EGYPNRIAFQEFFQRYRILYPENSTTTTFssklkasTKQNCEFLLTSLQLDTkvYKIGNTKLFFK 779
Cdd:cd14882  587 KGFSYRIPFQEFLRRYQFLAFDFDETVEM-------TKDNCRLLLIRLKMEG--WAIGKTKVFLK 642
MYSc_Myo24B cd14938
class XXIV B myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a ...
89-777 1.36e-49

class XXIV B myosin, motor domain; These myosins have a 1-2 IQ motifs in their neck and a coiled-coil region in their C-terminal tail. The functions of these myosins remain elusive. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276898 [Multi-domain]  Cd Length: 713  Bit Score: 189.66  E-value: 1.36e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     89 PSVLYNLEKRYDCDLIYTYSGLFLVAINPYHNLNLYSEDHINLYHNKHnrlsksrldenSHEKLPPHIFAIAEEAYENLL 168
Cdd:cd14938    1 PSVLYHLKERFKNNKFYTKMGPLLIFINPKINNNINNEETIEKYKCID-----------CIEDLSLNEYHVVHNALKNLN 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    169 SEGKDQSILVTGESGAGKTENTKKILQYLASITSGSPSNIAPVSGSSIVE-----------SFEMKILQSNPILESFGNA 237
Cdd:cd14938   70 ELKRNQSIIISGESGSGKSEIAKNIINFIAYQVKGSRRLPTNLNDQEEDNihneentdyqfNMSEMLKHVNVVMEAFGNA 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    238 QTVRNNNSSRFGKFIKIEFNEHgMINGAHIEWYLLEKSRIVHQNSKERNYHIFYQLLSGLDDSELKNLRLKsrNVKDYKI 317
Cdd:cd14938  150 KTVKNNNSSRFSKFCTIHIENE-EIKSFHIKKFLLDKERLINRKANENSFNIFYYIINGSSDKFKKMYFLK--NIENYSM 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    318 LsnSNQDIIPGINDVE-NFKELLSALNIIGFSKDQIRWIFQVVAIILLIGNIEFVSDRAEQASFK---------NDVSAI 387
Cdd:cd14938  227 L--NNEKGFEKFSDYSgKILELLKSLNYIFDDDKEIDFIFSVLSALLLLGNTEIVKAFRKKSLLMgknqcgqniNYETIL 304
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    388 C-----SNLGVDEK-------------DFQTAILRPRSKA--GKEWVSQSKNSQQAKFILNALSRNLYERLFGYIVDMIN 447
Cdd:cd14938  305 SelensEDIGLDENvknlllackllsfDIETFVKYFTTNYifNDSILIKVHNETKIQKKLENFIKTCYEELFNWIIYKIN 384
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    448 K---NLDHGSATLNYIGLLDIAGFEIFENNSFEQLCINYTNEKLQQFFNNHMFVLEQSEYLKENIQWDYIDYGKDLQLTI 524
Cdd:cd14938  385 EkctQLQNININTNYINVLDMAYFENSKDNSLEQLLINTTNEEIIKIKNDCLYKKRVLSYNEDGIFCEYNSENIDNEPLY 464
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    525 DLIESKGppTGVLPLLDEEAVLPKSTDES-FYSKLISTWDQNS---SKFKRSRLKNGFILKHYAGDVEYTVEGWLSKNKD 600
Cdd:cd14938  465 NLLVGPT--EGSLFSLLENVSTKTIFDKSnLHSSIIRKFSRNSkyiKKDDITGNKKTFVITHSCGDIIYNAENFVEKNID 542
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    601 PLNDNLLSLLSSSQNDIISKLFQPEGEKSSSAGVEAN-----ISNQEVKKSARTSTFKTTSSRHREQQITLLNQLASTHP 675
Cdd:cd14938  543 ILTNRFIDMVKQSENEYMRQFCMFYNYDNSGNIVEEKrrysiQSALKLFKRRYDTKNQMAVSLLRNNLTELEKLQETTFC 622
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    676 HFVRCIIPN-NVKKVKTFNRRLILDQLRCNGVLEGIRLAREGYPNRIAFQEFFQRYRilypensttttfssKLKASTKQN 754
Cdd:cd14938  623 HFIVCMKPNeSKRELCSFDANIVLRQVRNFSIVEASQLKVGYYPHKFTLNEFLSIFD--------------IKNEDLKEK 688
                        730       740
                 ....*....|....*....|...
gi 730092    755 CEFLLTSLQLDTKVYKIGNTKLF 777
Cdd:cd14938  689 VEALIKSYQISNYEWMIGNNMIF 711
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
111-254 4.99e-37

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 137.86  E-value: 4.99e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    111 FLVAINPYHNLNLYSEDHINLYHNKHNRLSKsrldensheklPPHIFAIAEEAYENLLSEGKDQSILVTGESGAGKTENT 190
Cdd:cd01363    1 VLVRVNPFKELPIYRDSKIIVFYRGFRRSES-----------QPHVFAIADPAYQSMLDGYNNQSIFAYGESGAGKTETM 69
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 730092    191 KKILQYLASITSGSPSNIAPVSGSSIVESF---EMKILQSNPILESFGNAQTVRNNNSSRFGKFIKI 254
Cdd:cd01363   70 KGVIPYLASVAFNGINKGETEGWVYLTEITvtlEDQILQANPILEAFGNAKTTRNENSSRFGKFIEI 136
MYSc_Myo33 cd14894
class myosin, motor domain; Class XXXIII myosins have variable numbers of IQ domain and 2 ...
95-714 2.54e-28

class myosin, motor domain; Class XXXIII myosins have variable numbers of IQ domain and 2 tandem ANK repeats that are separated by a PH domain. The myosin classes XXX to XXXIV contain members from Phytophthora species and Hyaloperonospora parasitica. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy.


Pssm-ID: 276859 [Multi-domain]  Cd Length: 871  Bit Score: 124.47  E-value: 2.54e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     95 LEKRYDCDLIYTYSGLFLVAI-NPYHNL------NLYSEDHINLYHNKhnrlsksrldENSHEKLPPHIFAIAEEAYENL 167
Cdd:cd14894    7 LTSRFDDDRIYTYINHHTMAVmNPYRLLqtarftSIYDEQVVLTYADT----------ANAETVLAPHPFAIAKQSLVRL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    168 -------------------LSEGKDQSILVTGESGAGKTENTKKILQYLASIT----SGSPSNIAPVSGSSI-------- 216
Cdd:cd14894   77 ffdnehtmplpstissnrsMTEGRGQSLFLCGESGSGKTELAKDLLKYLVLVAqpalSKGSEETCKVSGSTRqpkiklft 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    217 ------------------------VESFEMK------------------------------------------------- 223
Cdd:cd14894  157 sstkstiqmrteeartialleakgVEKYEIVlldlhperwdemtsvsrskrlpqvhvdglffgfyeklehledeeqlrmy 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    224 ------------ILQSNPILESFGNAQTVRNNNSSRFGKF--IKIEFNEHG---MINGAHIEWYLLEKSRIVHQNSKER- 285
Cdd:cd14894  237 fknphaakklsiVLDSNIVLEAFGHATTSMNLNSSRFGKMttLQVAFGLHPwefQICGCHISPFLLEKSRVTSERGRESg 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    286 -----NYHIFYQLLSGLDDSEL-----KNLRLKSRNVKDYKILSNSNQDIIPGIN-------DVENFKELLSALNIIGFS 348
Cdd:cd14894  317 dqnelNFHILYAMVAGVNAFPFmrllaKELHLDGIDCSALTYLGRSDHKLAGFVSkedtwkkDVERWQQVIDGLDELNVS 396
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    349 KDQIRWIFQVVAIILLIGNIEFVSDRAEQASFKNDVSAICS--------NLGVDEKDFQTAILRPRS-KAGKEWVSQSKN 419
Cdd:cd14894  397 PDEQKTIFKVLSAVLWLGNIELDYREVSGKLVMSSTGALNApqkvvellELGSVEKLERMLMTKSVSlQSTSETFEVTLE 476
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    420 SQQAKFILNALSRNLYERLFGYIVDMINK--------------NLDHGSATLNYIGLL---DIAGFEIFENNSFEQLCIN 482
Cdd:cd14894  477 KGQVNHVRDTLARLLYQLAFNYVVFVMNEatkmsalstdgnkhQMDSNASAPEAVSLLkivDVFGFEDLTHNSLDQLCIN 556
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    483 YTNEKLqqffnnhmfvleqseYLKENiQWDYIDYGKDLQLTI-----DLIESKGPPTGVLPLLDEEAVLPKSTD-----E 552
Cdd:cd14894  557 YLSEKL---------------YAREE-QVIAVAYSSRPHLTArdsekDVLFIYEHPLGVFASLEELTILHQSENmnaqqE 620
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    553 SFYSKLI--STWDQNSSKFKRSR--LKNG------------FILKHYAGDVEYTVEGWLSKNKDPLNDNLLSLLSSSQND 616
Cdd:cd14894  621 EKRNKLFvrNIYDRNSSRLPEPPrvLSNAkrhtpvllnvlpFVIPHTRGNVIYDANDFVKKNSDFVYANLLVGLKTSNSS 700
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    617 IISKLFQpegeKSSSAGVEANiSNQEVKKSA--RTSTFKTTSSRHREQQITLLNQLASTHPHFVRCIIPNNVKKVKTFNR 694
Cdd:cd14894  701 HFCRMLN----ESSQLGWSPN-TNRSMLGSAesRLSGTKSFVGQFRSHVNVLTSQDDKNMPFYFHCIRPNAKKQPSLVNN 775
                        810       820
                 ....*....|....*....|
gi 730092    695 RLILDQLRCNGVLEGIRLAR 714
Cdd:cd14894  776 DLVEQQCRSQRLIRQMEICR 795
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
867-1669 4.43e-27

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 120.59  E-value: 4.43e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    867 NEQINKLKNdlqEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISRE 946
Cdd:COG1196  199 EKQLEKLER---QAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSE 275
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    947 KLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINS 1026
Cdd:COG1196  276 LEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1027 KEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKID 1106
Cdd:COG1196  356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELE 435
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1107 NHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETK----EQEQKKRNSLVESLNDSKIK 1182
Cdd:COG1196  436 ELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDrleaEQRASQGVRAVLEALESGLP 515
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1183 ELEARLSQEISLNQYLNKRIS---GNSVETNISstrrstsysDDPLDKEDIIKKYYDLQLAFTEITrnLENEIEEKKNLI 1259
Cdd:COG1196  516 GVYGPVAELIKVKEKYETALEaalGNRLQAVVV---------ENEEVAKKAIEFLKENKAGRATFL--PLDRIKPLRSLK 584
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1260 SRLRFTETRLASS--SFEDQKIKA---------------QMKKLKKLIQDMDPSIPLDSILNEP----------LDNCPD 1312
Cdd:COG1196  585 SDAAPGFLGLASDliDFDPKYEPAvrfvlgdtlvvddleQARRLARKLRIKYRIVTLDGDLVEPsgsitggsrnKRSSLA 664
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1313 KESDINKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLK--FEASEERVKSLEDKLKTmpL 1390
Cdd:COG1196  665 QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKreLAALEEELEQLQSRLEE--L 742
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1391 RDRTNLPVGDIIKNRDSISKYEEEIRyyklenyKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQ 1470
Cdd:COG1196  743 EEELEELEEELEELQERLEELEEELE-------SLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERE 815
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1471 KELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQE 1550
Cdd:COG1196  816 LESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1551 tlLELKRVQDVKKIlsddlAHLKERLSAVEDRSQYTDEINRLKEELNCSLkaetnlkkEFATLKYKLETSTNDSEAKISD 1630
Cdd:COG1196  896 --LESELAELKEEI-----EKLRERLEELEAKLERLEVELPELEEELEEE--------YEDTLETELEREIERLEEEIEA 960
                        810       820       830       840
                 ....*....|....*....|....*....|....*....|....*.
gi 730092   1631 L-------LKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTE 1669
Cdd:COG1196  961 LgpvnlraIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
863-1768 2.49e-25

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 115.20  E-value: 2.49e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    863 TKKFNEQINKLKNDLQEMESKKKFLEEKnqktVNELENTQDLLNQEKENLRKNESLLNRVKTSSETL--------QKQFD 934
Cdd:COG1196  167 VSKYKERKEEAERKLERTEENLERLEDL----LEELEKQLEKLERQAEKAERYQELKAELRELELALllaklkelRKELE 242
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    935 DLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLE 1014
Cdd:COG1196  243 ELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELE 322
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1015 NEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNK 1094
Cdd:COG1196  323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEEL 402
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1095 ESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLve 1174
Cdd:COG1196  403 KREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLE-- 480
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1175 slndSKIKELEARLsqeislNQYLNKRISGNSVETNISSTRRSTSYSDDPLDKEDIIKKYY----------DLQLAFTEI 1244
Cdd:COG1196  481 ----KELSSLEARL------DRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYetaleaalgnRLQAVVVEN 550
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1245 TRNLENEIE-EKKNLISRLRFTETRLASSsFEDQKIKAQMKKLKKLIQ--DMDPSipLDSILNEPLDN---CPDKESdIN 1318
Cdd:COG1196  551 EEVAKKAIEfLKENKAGRATFLPLDRIKP-LRSLKSDAAPGFLGLASDliDFDPK--YEPAVRFVLGDtlvVDDLEQ-AR 626
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1319 KLMLEVDYLKR--QLDIEtraHYDAENAISAlhskfrkiqGESSLSSSDIYKLKFEASEERVKSLEDKLKtmplrdrtnl 1396
Cdd:COG1196  627 RLARKLRIKYRivTLDGD---LVEPSGSITG---------GSRNKRSSLAQKRELKELEEELAELEAQLE---------- 684
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1397 pvgdiiknrdsisKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSS 1476
Cdd:COG1196  685 -------------KLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE 751
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1477 TIKQQKQqfencmddlqgnelRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKliweremERNDSDMQLQETLLELK 1556
Cdd:COG1196  752 ELEELQE--------------RLEELEEELESLEEALAKLKEEIEELEEKRQALQE-------ELEELEEELEEAERRLD 810
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1557 RVQDVKKILSDDLAHLKERLSAVEDR-SQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLEtstnDSEAKISDLLKQL 1635
Cdd:COG1196  811 ALERELESLEQRRERLEQEIEELEEEiEELEEKLDELEEELEELEKELEELKEELEELEAEKE----ELEDELKELEEEK 886
                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1636 DHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLT-----KIKQELESDLNQKTDALQISNAALSSStq 1710
Cdd:COG1196  887 EELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEeeleeEYEDTLETELEREIERLEEEIEALGPV-- 964
                        890       900       910       920       930
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 730092   1711 kNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLYEEN 1768
Cdd:COG1196  965 -NLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINEN 1021
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
930-1785 1.16e-24

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 112.84  E-value: 1.16e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      930 QKQFDDLVSEKDE-----------ISR---EKLEVAQNLEEAHQKIQGLQETIREREATLEKLH---SKNNELIKQISDL 992
Cdd:TIGR02168  143 QGKISEIIEAKPEerraifeeaagISKykeRRKETERKLERTRENLDRLEDILNELERQLKSLErqaEKAERYKELKAEL 222
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      993 ncdiskEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDI---KLVTLEKNCNIAMSRLQSLVTE 1069
Cdd:TIGR02168  223 ------RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEElrlEVSELEEEIEELQKELYALANE 296
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1070 NSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQK 1149
Cdd:TIGR02168  297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1150 IKEEYSNFQR---ETKEQEQKKRNSLVEslNDSKIKELEARLSQEISLNQYLNKRISGNSVETNISSTRRSTSYSDDPL- 1225
Cdd:TIGR02168  377 LEEQLETLRSkvaQLELQIASLNNEIER--LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQe 454
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1226 DKEDIIKKYYDLQLAFTEITRNLENEIEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDP---------- 1295
Cdd:TIGR02168  455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlselisvdeg 534
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1296 -----SIPLDSILNEPLDNcpdkesDINKLMLEVDYLK-----RQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSD 1365
Cdd:TIGR02168  535 yeaaiEAALGGRLQAVVVE------NLNAAKKAIAFLKqnelgRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLV 608
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1366 IYKLKFEAS----------EERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRyyklenyklQEILNESNgK 1435
Cdd:TIGR02168  609 KFDPKLRKAlsyllggvlvVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTN---------SSILERRR-E 678
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1436 LSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENcmddlqgnelrlrehihalkqAEEDVKN 1515
Cdd:TIGR02168  679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA---------------------LRKDLAR 737
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1516 MASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRsqytdeINRLKEE 1595
Cdd:TIGR02168  738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA------LDELRAE 811
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1596 LncslkaeTNLKKEFATLKYKLETSTNDSEAKisdllkqldhyTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKG 1675
Cdd:TIGR02168  812 L-------TLLNEEAANLRERLESLERRIAAT-----------ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1676 KIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETL-QLQMEQNSRNGELVKTLQASCNGYKDKF 1754
Cdd:TIGR02168  874 ELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLaQLELRLEGLEVRIDNLQERLSEEYSLTL 953
                          890       900       910
                   ....*....|....*....|....*....|.
gi 730092     1755 DDEKQKNIDLYEENQTLQKLNTDLQLQLKNL 1785
Cdd:TIGR02168  954 EEAEALENKIEDDEEEARRRLKRLENKIKEL 984
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
867-1597 3.67e-23

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 107.83  E-value: 3.67e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      867 NEQINKLKndlQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISRE 946
Cdd:TIGR02168  199 ERQLKSLE---RQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE 275
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      947 KLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINS 1026
Cdd:TIGR02168  276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES 355
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1027 KEEEIKSFNDKLSSSE----------EDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLknKES 1096
Cdd:TIGR02168  356 LEAELEELEAELEELEsrleeleeqlETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL--EEA 433
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1097 ELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNY----------QKIKEEYSNFQRETKEQEQ 1166
Cdd:TIGR02168  434 ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELaqlqarldslERLQENLEGFSEGVKALLK 513
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1167 KKR--------------------------------NSLVESLNDSK-----IKELEARLSQEISLNQYLNKRISGNSVET 1209
Cdd:TIGR02168  514 NQSglsgilgvlselisvdegyeaaieaalggrlqAVVVENLNAAKkaiafLKQNELGRVTFLPLDSIKGTEIQGNDREI 593
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1210 nISSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRNLENEIEEKKNLISRLRF--TETRLASSSF--------EDQKI 1279
Cdd:TIGR02168  594 -LKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIvtLDGDLVRPGGvitggsakTNSSI 672
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1280 KAQMKKLKKLIQDMDPSIPLDSILNEPLDncpDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGES 1359
Cdd:TIGR02168  673 LERRREIEELEEKIEELEEKIAELEKALA---ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1360 SLSSSDIYklkfEASEERVKSLEDKLKTMPLRDRTNlpvGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQL 1439
Cdd:TIGR02168  750 AQLSKELT----ELEAEIEELEERLEEAEEELAEAE---AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1440 TLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASI 1519
Cdd:TIGR02168  823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1520 IEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQD-VKKILSDDLAHLKERLSAVEDRSQYT-DEINRLKEELN 1597
Cdd:TIGR02168  903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQErLSEEYSLTLEEAEALENKIEDDEEEArRRLKRLENKIK 982
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
866-1686 8.87e-21

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 100.14  E-value: 8.87e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      866 FNEQINKLKNDLQEMESKkkflEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRV-KTSSETLQKQFDDLVSEKDEIS 944
Cdd:TIGR02169  168 FDRKKEKALEELEEVEEN----IERLDLIIDEKRQQLERLRREREKAERYQALLKEKrEYEGYELLKEKEALERQKEAIE 243
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      945 REKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSK--------NNELIKQISDLNCDISKEQSSQSLIKESKLKLENE 1016
Cdd:TIGR02169  244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKikdlgeeeQLRVKEKIGELEAEIASLERSIAEKERELEDAEER 323
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1017 IKRLKDVINSKEEEIKSFN-----------------DKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNEN 1079
Cdd:TIGR02169  324 LAKLEAEIDKLLAEIEELEreieeerkrrdklteeyAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1080 FKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQR 1159
Cdd:TIGR02169  404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1160 ETKEQEQK---------------KRNSLVESLNDSKIKELEARLSQEISLN----------------------------- 1195
Cdd:TIGR02169  484 ELSKLQRElaeaeaqaraseervRGGRAVEEVLKASIQGVHGTVAQLGSVGeryataievaagnrlnnvvveddavakea 563
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1196 -QYLNKRISGNSveTNISSTRRSTSYSD-DPLDKEDIIKKYYDL-------QLAFTEITRN------------------- 1247
Cdd:TIGR02169  564 iELLKRRKAGRA--TFLPLNKMRDERRDlSILSEDGVIGFAVDLvefdpkyEPAFKYVFGDtlvvedieaarrlmgkyrm 641
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1248 --LENEIEEKKNLIS----RLRFTETRLASSSFEDQKIKAQMKKLKKLiqdmdpsipLDSILnepldncpdkeSDINKLM 1321
Cdd:TIGR02169  642 vtLEGELFEKSGAMTggsrAPRGGILFSRSEPAELQRLRERLEGLKRE---------LSSLQ-----------SELRRIE 701
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1322 LEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGEsslsssdiyklkFEASEERVKSLEDKLKtmplrdrtnlpvgdi 1401
Cdd:TIGR02169  702 NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER------------LEELEEDLSSLEQEIE--------------- 754
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1402 iKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLS-----QLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSS 1476
Cdd:TIGR02169  755 -NVKSELKELEARIEELEEDLHKLEEALNDLEARLShsripEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1477 TIKQQKQQfencMDDLQGNELRLREHIHALKQAEEDvknMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELK 1556
Cdd:TIGR02169  834 EIQELQEQ----RIDLKEQIKSIEKEIENLNGKKEE---LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1557 RVQDVKKILSDDLAHLKERLSAVEDR-SQYTDEINRLKEELNCSLKAEtnlkkefatlkyKLETSTNDSEAKISDL---- 1631
Cdd:TIGR02169  907 ELEAQIEKKRKRLSELKAKLEALEEElSEIEDPKGEDEEIPEEELSLE------------DVQAELQRVEEEIRALepvn 974
                          890       900       910       920       930
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 730092     1632 LKQLDHYTKVVEMLNnekdaislaekELYQKYEALNTECESLKGKIVSLTKIKQE 1686
Cdd:TIGR02169  975 MLAIQEYEEVLKRLD-----------ELKEKRAKLEEERKAILERIEEYEKKKRE 1018
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1007-1870 1.44e-17

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 89.77  E-value: 1.44e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1007 KESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAA 1086
Cdd:COG1196  171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSR 250
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1087 LNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQ 1166
Cdd:COG1196  251 LEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKE 330
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1167 KKrnslveslnDSKIKELEARLSQEISLNQYLNKrisgnsvetniSSTRRSTSYSDDPLDKEDIIKKyydlqlaFTEITR 1246
Cdd:COG1196  331 KI---------EALKEELEERETLLEELEQLLAE-----------LEEAKEELEEKLSALLEELEEL-------FEALRE 383
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1247 NLENEIEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDPSIPldsilnepldncpDKESDINKLMLEVDY 1326
Cdd:COG1196  384 ELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELE-------------ELQTELEELNEELEE 450
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1327 LKRQLDIETRAHYDAENAISALHSKFRKIQGEssLSSSDIYKLKFEASEERVKSLEDKLKTMpLRDRTNL--PVGDIIKN 1404
Cdd:COG1196  451 LEEQLEELRDRLKELERELAELQEELQRLEKE--LSSLEARLDRLEAEQRASQGVRAVLEAL-ESGLPGVygPVAELIKV 527
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1405 RDsisKYE---EEIRYYKLEN---------YKLQEILNESN-GKLSQLTLD-LRQSKSKEALLSEQLDRLQKDLESTERQ 1470
Cdd:COG1196  528 KE---KYEtalEAALGNRLQAvvveneevaKKAIEFLKENKaGRATFLPLDrIKPLRSLKSDAAPGFLGLASDLIDFDPK 604
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1471 KE-----LLSSTIkqqkqqfenCMDDLQGNELRLREHIHALK--QAEEDV----KNMASIIEKLKTQNKQKEKLIWEREm 1539
Cdd:COG1196  605 YEpavrfVLGDTL---------VVDDLEQARRLARKLRIKYRivTLDGDLvepsGSITGGSRNKRSSLAQKRELKELEE- 674
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1540 ERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDR-SQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLE 1618
Cdd:COG1196  675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQlEELKRELAALEEELEQLQSRLEELEEELEELEEELE 754
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1619 tstnDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDAL 1698
Cdd:COG1196  755 ----ELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1699 QisnaalsSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNTDL 1778
Cdd:COG1196  831 E-------ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903
                        810       820       830       840       850       860       870       880
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1779 QLQLKNLHERLSDTTEKNAWLskihELENMVSLETDLKYEEMKKNKSLERAVEELQTKNSQQTDVIELANKNRSEFEEAT 1858
Cdd:COG1196  904 KEEIEKLRERLEELEAKLERL----EVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERY 979
                        890
                 ....*....|..
gi 730092   1859 LKYEAQISDLEK 1870
Cdd:COG1196  980 EELKSQREDLEE 991
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
935-1787 9.60e-17

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 87.05  E-value: 9.60e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      935 DLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNN------------------ELIKQISDLNCDI 996
Cdd:TIGR02169  160 DEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREkaeryqallkekreyegyELLKEKEALERQK 239
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      997 SKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLS--SSEEDLDIKlvtlekncniamSRLQSLVTENSDLR 1074
Cdd:TIGR02169  240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKdlGEEEQLRVK------------EKIGELEAEIASLE 307
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1075 SKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRD--------------DAVSEHGKITAELKETRIQL 1140
Cdd:TIGR02169  308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDklteeyaelkeeleDLRAELEEVDKEFAETRDEL 387
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1141 TEYKSNYQKIKEEYSNFQRE-TKEQEQKKRNSLVESLNDSKIKELEARLSQEISLNQYLNKRISgnSVETNISSTRRsts 1219
Cdd:TIGR02169  388 KDYREKLEKLKREINELKRElDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK--KQEWKLEQLAA--- 462
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1220 ysddplDKEDIIKKYYDLQlaftEITRNLENEIEEKKNLISRLrftETRLASSSFEDQKIKAQMKKLKKLIQDMDPSI-- 1297
Cdd:TIGR02169  463 ------DLSKYEQELYDLK----EEYDRVEKELSKLQRELAEA---EAQARASEERVRGGRAVEEVLKASIQGVHGTVaq 529
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1298 ----------PLDSILNEPLDNCPDKESDINKLMLEvdYLKRqldietrahydaENAISALHSKFRKIQGESSLSSSdIY 1367
Cdd:TIGR02169  530 lgsvgeryatAIEVAAGNRLNNVVVEDDAVAKEAIE--LLKR------------RKAGRATFLPLNKMRDERRDLSI-LS 594
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1368 KLKFEASEERVKSLEDKLKTM---PLRDRTnlpvgdIIKNRDSISKYEEEIRYYKLENyklqEILnESNGKLSQLTLDLR 1444
Cdd:TIGR02169  595 EDGVIGFAVDLVEFDPKYEPAfkyVFGDTL------VVEDIEAARRLMGKYRMVTLEG----ELF-EKSGAMTGGSRAPR 663
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1445 QSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLK 1524
Cdd:TIGR02169  664 GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE 743
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1525 TQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHlkERLSAVEDRSQYTDEINRLKEELNCSLKAET 1604
Cdd:TIGR02169  744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKL 821
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1605 N---LKKEFATLKYK-LETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSL 1680
Cdd:TIGR02169  822 NrltLEKEYLEKEIQeLQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1681 TKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEE---------TLQLQMEqnsRNGELVKTLQASCNGYK 1751
Cdd:TIGR02169  902 ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEipeeelsleDVQAELQ---RVEEEIRALEPVNMLAI 978
                          890       900       910
                   ....*....|....*....|....*....|....*.
gi 730092     1752 DKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHE 1787
Cdd:TIGR02169  979 QEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
855-1186 7.69e-15

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 80.53  E-value: 7.69e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    855 TSSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFD 934
Cdd:COG1196  661 SSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLE 740
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    935 DLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLE 1014
Cdd:COG1196  741 ELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1015 NEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDiklvTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNK 1094
Cdd:COG1196  821 QRRERLEQEIEELEEEIEELEEKLDELEEELE----ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL 896
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1095 ESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYK-----------------------SNYQKIK 1151
Cdd:COG1196  897 ESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETElereierleeeiealgpvnlraiEEYEEVE 976
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 730092   1152 EEYS--NFQRETKEQEQKKRNSLVESLNDSKIKELEA 1186
Cdd:COG1196  977 ERYEelKSQREDLEEAKEKLLEVIEELDKEKRERFKE 1013
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
862-1189 9.96e-15

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 80.50  E-value: 9.96e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      862 RTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKD 941
Cdd:TIGR02169  668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS 747
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      942 EISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSK-NNELIKQISDLNCDISKEQSSQSLIK---ESKLK----- 1012
Cdd:TIGR02169  748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARlSHSRIPEIQAELSKLEEEVSRIEARLreiEQKLNrltle 827
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1013 ---LENEIKRLKDVINSKEEEIKSFNDKLSSSE---EDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAA 1086
Cdd:TIGR02169  828 keyLEKEIQELQEQRIDLKEQIKSIEKEIENLNgkkEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1087 LNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHG-------------KITAEL--------------KETRIQ 1139
Cdd:TIGR02169  908 LEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEeelsledvqaelqRVEEEIralepvnmlaiqeyEEVLKR 987
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|..
gi 730092     1140 LTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLND--SKIKELEARLS 1189
Cdd:TIGR02169  988 LDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAinENFNEIFAELS 1039
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
877-1688 1.17e-14

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 80.02  E-value: 1.17e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      877 LQEMESKKKFLEEKNQKTVNELENTQdLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEE 956
Cdd:pfam02463  202 LKEQAKKALEYYQLKEKLELEEEYLL-YLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE 280
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      957 ---AHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKS 1033
Cdd:pfam02463  281 kklQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEE 360
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1034 FNDKLSSSEEDLDIKLVTlekncniamsrlqslvtensdlrsknenFKKEKAALNNQLKNKESELLKMKEKIDNHKKELA 1113
Cdd:pfam02463  361 LEKLQEKLEQLEEELLAK----------------------------KKLESERLSSAAKLKEEELELKSEEEKEAQLLLE 412
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1114 TFSKQRDDAVSEHGKITAELKETRIqLTEYKSNYQKIKEEYSNFQRETK-------EQEQKKRNSLVESLNDSKIKELEA 1186
Cdd:pfam02463  413 LARQLEDLLKEEKKEELEILEEEEE-SIELKQGKLTEEKEELEKQELKLlkdelelKKSEDLLKETQLVKLQEQLELLLS 491
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1187 RLSQEISLNQYLNKRISGNSVETNISSTRRSTSYSDDPLDKED-IIKKYYDLQLAFTEITRNLENEIEEKKNLISRLRFT 1265
Cdd:pfam02463  492 RQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLgVAVENYKVAISTAVIVEVSATADEVEERQKLVRALT 571
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1266 ETRLASSSFEDQKIKAQMKKLKKLIQDMDPSIPLDSILNEPLDNCPDK-----ESDINKLMLEVDYLKRQLDIETRAHYD 1340
Cdd:pfam02463  572 ELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDkrakvVEGILKDTELTKLKESAKAKESGLRKG 651
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1341 AENAI------------SALHSKFRKIQGESSLSSSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSI 1408
Cdd:pfam02463  652 VSLEEglaeksevkaslSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQ 731
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1409 SKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENC 1488
Cdd:pfam02463  732 DKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELK 811
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1489 MDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDD 1568
Cdd:pfam02463  812 EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 891
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1569 LAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHY---TKVVEML 1645
Cdd:pfam02463  892 EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERnkrLLLAKEE 971
                          810       820       830       840
                   ....*....|....*....|....*....|....*....|....
gi 730092     1646 NNEKDAISLAEK-ELYQKYEALNTECESLKGKIVSLTKIKQELE 1688
Cdd:pfam02463  972 LGKVNLMAIEEFeEKEERYNKDELEKERLEEEKKKLIRAIIEET 1015
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
861-1479 7.45e-14

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 76.98  E-value: 7.45e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      861 TRTKKFNEQINKLKNDLQEMESKKKFLEeknqKTVNELENTQDLLNQEKENLRKNESLLN-RVKTSSETLQKQFDDLVSE 939
Cdd:TIGR04523   33 TEEKQLEKKLKTIKNELKNKEKELKNLD----KNLNKDEEKINNSNNKIKILEQQIKDLNdKLKKNKDKINKLNSDLSKI 108
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      940 KDEISREKlevaQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKeqssqslIKESKLKLENEIKR 1019
Cdd:TIGR04523  109 NSEIKNDK----EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYND-------LKKQKEELENELNL 177
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1020 LKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNcniamsrlQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELL 1099
Cdd:TIGR04523  178 LEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKN--------KSLESQISELKKQNNQLKDNIEKKQQEINEKTTEIS 249
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1100 KMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIK-EEYSNFQRETKEQEQKKRNSLVESLND 1178
Cdd:TIGR04523  250 NTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNnQKEQDWNKELKSELKNQEKKLEEIQNQ 329
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1179 -SKIKELEARLSQEISLNQYLNKRISGNSVETNISSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRNLENEIEEKKN 1257
Cdd:TIGR04523  330 iSQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQ 409
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1258 LISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDPSIPLDSILNEPLDNCPDK--------ESDINKLMLEVDYLKR 1329
Cdd:TIGR04523  410 KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESletqlkvlSRSINKIKQNLEQKQK 489
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1330 QLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKFEAS--EERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDS 1407
Cdd:TIGR04523  490 ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKekESKISDLEDELNKDDFELKKENLEKEIDEKNKE 569
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 730092     1408 ISKYEEEIRYYKLENYKLQEILNESNGKLSQLTldlrqskSKEALLSEQLDRLQKDLESTERQKELLSSTIK 1479
Cdd:TIGR04523  570 IEELKQTQKSLKKKQEEKQELIDQKEKEKKDLI-------KEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
864-1484 1.01e-12

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 73.64  E-value: 1.01e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    864 KKFNEQINKLKNDLQE-MESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNR-------VKTSSETLQKQFDD 935
Cdd:COG0419  181 KEAKAKIEELEGQLSElLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEErlaeleeEKERLEELKARLLE 260
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    936 LVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQIsdlncdiskeqssqslikESKLKLEN 1015
Cdd:COG0419  261 IESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALL------------------EELEELLE 322
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1016 EIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKE 1095
Cdd:COG0419  323 KLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELS 402
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1096 SELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNY----------QKIKEEYSNFQRETKEQE 1165
Cdd:COG0419  403 AALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAgagekcpvcgQELPEEHEKELLELYELE 482
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1166 qkkrnsLVESLNDSKIKELEARLSQEIslnQYLNKRISGNSVETNISSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEIT 1245
Cdd:COG0419  483 ------LEELEEELSREKEEAELREEI---EELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQ 553
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1246 RN-LENEIEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIqdmdpsipldsilnepldncpDKESDINKLMLEV 1324
Cdd:COG0419  554 LQqLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELK---------------------KKLKELEERLSQL 612
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1325 DYLKRQLDIETrAHYDAENAISALHSKFRKIQGESSLSssdiyklkfEASEERVKSLEDKLKtmplrdrtnlpvgdiikn 1404
Cdd:COG0419  613 EELLQSLELSE-AENELEEAEEELESELEKLNLQAELE---------ELLQAALEELEEKVE------------------ 664
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1405 rdsisKYEEEIRYYKLENYKLQEILNEsNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQ 1484
Cdd:COG0419  665 -----ELEAEIRRELQRIENEEQLEEK-LEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKL 738
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1242-1900 1.36e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 73.17  E-value: 1.36e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1242 TEITRNLENEIEEKKNLISRLRFTEtrlasssfEDQKIKAQMKKLKKLIQDMDPsipLDSILNEpldncpdKESDINKLM 1321
Cdd:TIGR02168  212 AERYKELKAELRELELALLVLRLEE--------LREELEELQEELKEAEEELEE---LTAELQE-------LEEKLEELR 273
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1322 LEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPVGDI 1401
Cdd:TIGR02168  274 LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1402 IKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLtldlrqsKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQ 1481
Cdd:TIGR02168  354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL-------ELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1482 KQQF-ENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIwEREMERNDSDMQLQETLLE------ 1554
Cdd:TIGR02168  427 LKKLeEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA-ERELAQLQARLDSLERLQEnlegfs 505
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1555 --LKRVQDVKKILSDDLAHLKERLSA--------------------VEDRSQYTDEINRLKE-----------------E 1595
Cdd:TIGR02168  506 egVKALLKNQSGLSGILGVLSELISVdegyeaaieaalggrlqavvVENLNAAKKAIAFLKQnelgrvtflpldsikgtE 585
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1596 LNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLL----------------KQLDHYTKVV----EMLN--------- 1646
Cdd:TIGR02168  586 IQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvddldnalelaKKLRPGYRIVtldgDLVRpggvitggs 665
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1647 NEKDAISLAEKelyQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETL 1726
Cdd:TIGR02168  666 AKTNSSILERR---REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1727 QLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLK-------NLHERLSDTTEknawl 1799
Cdd:TIGR02168  743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKalrealdELRAELTLLNE----- 817
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1800 sKIHELENmvsletdlKYEEMKKNK-SLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYISQQELE 1878
Cdd:TIGR02168  818 -EAANLRE--------RLESLERRIaATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
                          730       740
                   ....*....|....*....|..
gi 730092     1879 MKKSIRDNSSYRDKVQEMAQEI 1900
Cdd:TIGR02168  889 LALLRSELEELSEELRELESKR 910
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
981-1760 2.30e-12

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 72.77  E-value: 2.30e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      981 KNNELIKQI-SDLNCDISKEQSSQSLIKESKLKLENeikrLKDVINSKEEEIKSFNDKLSSSEEDLDiKLVTLEKNCNIA 1059
Cdd:TIGR00606  186 KALETLRQVrQTQGQKVQEHQMELKYLKQYKEKACE----IRDQITSKEAQLESSREIVKSYENELD-PLKNRLKEIEHN 260
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1060 MSRLQSLVTENSDLRSKnenfKKEKAALNNQLKNKESELL-----KMKEKIDNHKKELATFSKQRDDAVSEHGKITAELK 1134
Cdd:TIGR00606  261 LSKIMKLDNEIKALKSR----KKQMEKDNSELELKMEKVFqgtdeQLNDLYHNHQRTVREKERELVDCQRELEKLNKERR 336
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1135 ETRIQLTEYKsnyqkIKEEYSNFQRETKEQEQKKRNSLVESLN-DSKIKELEARLSQEISLNQYLNKRISGNSVETNISS 1213
Cdd:TIGR00606  337 LLNQEKTELL-----VEQGRLQLQADRHQEHIRARDSLIQSLAtRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAA 411
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1214 TRRSTSYSDDPLDKEDIIKkyydLQLAFTEITRNLENEIEEKKNLISRLRFTETRLasssfedQKIKAQMKKLKKLIQDM 1293
Cdd:TIGR00606  412 QLCADLQSKERLKQEQADE----IRDEKKGLGRTIELKKEILEKKQEELKFVIKEL-------QQLEGSSDRILELDQEL 480
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1294 DPSIPLDSILnepldncpDKESDINKLMLEVDYLK-RQLDIETRAHYDAENAISALHSKFRKIQGES-----SLSSSDIY 1367
Cdd:TIGR00606  481 RKAERELSKA--------EKNSLTETLKKEVKSLQnEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMltkdkMDKDEQIR 552
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1368 KLKFEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSK 1447
Cdd:TIGR00606  553 KIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVC 632
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1448 SKEALLSEqLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQN 1527
Cdd:TIGR00606  633 GSQDEESD-LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKL 711
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1528 KQKEKLIWEREMERND---------SDMQLQETllELKRVQDVKKILSDDLAHLKERLSAVEdrsqytdeinRLKEELNC 1598
Cdd:TIGR00606  712 KSTESELKKKEKRRDEmlglapgrqSIIDLKEK--EIPELRNKLQKVNRDIQRLKNDIEEQE----------TLLGTIMP 779
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1599 SLKAETNLKKEFATLKyKLETSTNDSEAKISDLLKQLDHY--TKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGK 1676
Cdd:TIGR00606  780 EEESAKVCLTDVTIME-RFQMELKDVERKIAQQAAKLQGSdlDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQ 858
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1677 IVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEET-------LQLQMEQNSRNGELVKTLQASCNG 1749
Cdd:TIGR00606  859 IQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAkeqdsplETFLEKDQQEKEELISSKETSNKK 938
                          810
                   ....*....|.
gi 730092     1750 YKDKFDDEKQK 1760
Cdd:TIGR00606  939 AQDKVNDIKEK 949
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
930-1664 3.37e-12

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 71.72  E-value: 3.37e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    930 QKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNcdISKEQSSQSLIKES 1009
Cdd:COG0419  142 QGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLL--EALEEELKELKKLE 219
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1010 KLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEdldiklvtlekncniAMSRLQSLVTENSDLRSKNENFKKEKAALNN 1089
Cdd:COG0419  220 EIQEEQEEEELEQEIEALEERLAELEEEKERLEE---------------LKARLLEIESLELEALKIREEELRELERLLE 284
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1090 QLKNKESELlkmkEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKR 1169
Cdd:COG0419  285 ELEEKIERL----EELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLE 360
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1170 NslVESLNDSKIKELEARLSQEISLNQYLNKRISGNSVEtnisstrrstsysddpldKEDIIKKYYDLQLAFTEITRNLE 1249
Cdd:COG0419  361 E--RLKELEERLEELEKELEKALERLKQLEEAIQELKEE------------------LAELSAALEEIQEELEELEKELE 420
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1250 NEIEEKKNLISRLRFTETRLasssfEDQKIKAQMKKLKKLIQDMDPsipldsILNEPLDNCPDKESdINKLMLEVDYLKR 1329
Cdd:COG0419  421 ELERELEELEEEIKKLEEQI-----NQLESKELMIAELAGAGEKCP------VCGQELPEEHEKEL-LELYELELEELEE 488
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1330 QLDIETRAHyDAENAISALHSKFRKIQgESSLSSSDIYKLKFEASEERVKSLEDKLKTMpLRDRTNLPVGDIIKNRDSIS 1409
Cdd:COG0419  489 ELSREKEEA-ELREEIEELEKELRELE-EELIELLELEEALKEELEEKLEKLENLLEEL-EELKEKLQLQQLKEELRQLE 565
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1410 KYEEEIRYYKLENyklqEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSstIKQQKQQFENCM 1489
Cdd:COG0419  566 DRLQELKELLEEL----RLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENE--LEEAEEELESEL 639
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1490 DDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREmERNDSDMQLQETLLELKRVQDVKKILSDDL 1569
Cdd:COG0419  640 EKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLE-ELEQLEEELEQLREELEELLKKLGEIEQLI 718
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1570 AHLKERLSAVEDRSQYTDEINRLKEELNCSLKAETNLKKEfatlKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEK 1649
Cdd:COG0419  719 EELESRKAELEELKKELEKLEKALELLEELREKLGKAGLR----ADILRNLLAQIEAEANEILSKLSLNRYDLRRLTIRK 794
                        730
                 ....*....|....*
gi 730092   1650 DAISLAEKELYQKYE 1664
Cdd:COG0419  795 DGNGGLVVVVYDGGE 809
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
870-1190 3.55e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 72.01  E-value: 3.55e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      870 INKLKNDLQEMESKkkflEEKNQKTVNELENTQDLLNQEKENLRK----NESLLNRVKTSSETLQKQFDDLVSEKDEISR 945
Cdd:TIGR02168  679 IEELEEKIEELEEK----IAELEKALAELRKELEELEEELEQLRKeleeLSRQISALRKDLARLEAEVEQLEERIAQLSK 754
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      946 EKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVIN 1025
Cdd:TIGR02168  755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1026 SKEEEIKSFNDKLSSSEEdlDIKLVTLEkncniamsrLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKI 1105
Cdd:TIGR02168  835 ATERRLEDLEEQIEELSE--DIESLAAE---------IEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1106 DNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKsnyQKIKEEYSNFQRETKEQEQKKRNSLVESlnDSKIKELE 1185
Cdd:TIGR02168  904 RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ---ERLSEEYSLTLEEAEALENKIEDDEEEA--RRRLKRLE 978

                   ....*
gi 730092     1186 ARLSQ 1190
Cdd:TIGR02168  979 NKIKE 983
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
867-1376 4.27e-12

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 71.72  E-value: 4.27e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    867 NEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISRE 946
Cdd:COG0419  248 KERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSL 327
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    947 kLEVAQNLEEAHQKIQGLQETIREREATLEK-LHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVIN 1025
Cdd:COG0419  328 -EERLEKLEEKLEKLESELEELAEEKNELAKlLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALE 406
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1026 SKEEEIKSFNDKLSSSEEDLDiKLVTLEKNCNIAMSRLQSLVTENSDLRS------------KNENFKKEKAALNNQLK- 1092
Cdd:COG0419  407 EIQEELEELEKELEELERELE-ELEEEIKKLEEQINQLESKELMIAELAGagekcpvcgqelPEEHEKELLELYELELEe 485
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1093 -----NKESELLKMKEKIDNHKKELATFSKQRDDAVSE----HGKITAELKETRIQLTEY-----KSNYQKIKEEYSNFQ 1158
Cdd:COG0419  486 leeelSREKEEAELREEIEELEKELRELEEELIELLELeealKEELEEKLEKLENLLEELeelkeKLQLQQLKEELRQLE 565
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1159 RETKEQEQKKRNSLVESLNDSKIKELEARLSQEISLNQYLNKRISgnSVETNISSTRRSTSYSDDPLDKEDI--IKKYYD 1236
Cdd:COG0419  566 DRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLS--QLEELLQSLELSEAENELEEAEEELesELEKLN 643
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1237 LQLAFTEITRNLENEIEEK-KNLISRLRftetRLASSSFEDQKIKAQMKKLKKLIQDMDPSIPLDSILNEPLDNCPDKES 1315
Cdd:COG0419  644 LQAELEELLQAALEELEEKvEELEAEIR----RELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIE 719
                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092   1316 DINKLMLEVDYLKRQLDIETRAHYDAEnaisALHSKFRKIQGESSLSSSDIYKLKFEASEE 1376
Cdd:COG0419  720 ELESRKAELEELKKELEKLEKALELLE----ELREKLGKAGLRADILRNLLAQIEAEANEI 776
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1080-1909 4.50e-12

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 71.67  E-value: 4.50e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1080 FKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAvSEHGKITAELKETRIQLTEYKsnYQKIKEEYSNFQR 1159
Cdd:COG1196  170 YKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKA-ERYQELKAELRELELALLLAK--LKELRKELEELEE 246
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1160 ETKEQEQKkrnslveslndskIKELEARLSQEISLNQYLNKRIsgnsvetnisstrrstsysddpldkEDIIKKYYDLQL 1239
Cdd:COG1196  247 ELSRLEEE-------------LEELQEELEEAEKEIEELKSEL-------------------------EELREELEELQE 288
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1240 AFTEITRNLEnEIEEKKNLIS-RLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDpsipldsilnepldncpDKESDIN 1318
Cdd:COG1196  289 ELLELKEEIE-ELEGEISLLReRLEELENELEELEERLEELKEKIEALKEELEERE-----------------TLLEELE 350
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1319 KLMLEVDYLKRQLDIETRAHYDA-ENAISALHSKFRKIQGESSLSSSDIYKLKfeaseERVKSLEDKLKTmpLRDRTNLP 1397
Cdd:COG1196  351 QLLAELEEAKEELEEKLSALLEElEELFEALREELAELEAELAEIRNELEELK-----REIESLEERLER--LSERLEDL 423
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1398 VGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKellsst 1477
Cdd:COG1196  424 KEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQ------ 497
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1478 ikQQKQQFENCMDDLQGNEL----RLREHIHALKQAE----------------EDVKNMASIIEKLKTQNKQKEkliwer 1537
Cdd:COG1196  498 --RASQGVRAVLEALESGLPgvygPVAELIKVKEKYEtaleaalgnrlqavvvENEEVAKKAIEFLKENKAGRA------ 569
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1538 emerndsdmqlqeTLLELKRVQDVKKILSDDLAHLKERLSAVEDR-SQYTDEINRLkeeLNCSLKAET--NLKKEFATLK 1614
Cdd:COG1196  570 -------------TFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFdPKYEPAVRFV---LGDTLVVDDleQARRLARKLR 633
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1615 YKLETSTNDSEAKISDLLKQLDHYTKvvemlnNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQK 1694
Cdd:COG1196  634 IKYRIVTLDGDLVEPSGSITGGSRNK------RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEEL 707
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1695 TDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLYEENQTLQKL 1774
Cdd:COG1196  708 RRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1775 NTDLQLQLKNLHERLSDTTEKNAWLS--KIHELENMVSLETDLKYEEmKKNKSLERAVEELQTKNSQQTDVIELANKNRS 1852
Cdd:COG1196  788 RQALQEELEELEEELEEAERRLDALEreLESLEQRRERLEQEIEELE-EEIEELEEKLDELEEELEELEKELEELKEELE 866
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 730092   1853 EFEEATLKYEAQISDLEkyisQQELEMKKSIRdnsSYRDKVQEMAQEIEFWKSRYES 1909
Cdd:COG1196  867 ELEAEKEELEDELKELE----EEKEELEEELR---ELESELAELKEEIEKLRERLEE 916
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1128-1880 7.35e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 70.86  E-value: 7.35e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1128 KITAELKETRIQLteYKSNYQKIKEEYSNFQRETKEQEQKKRNSlveslnDSKIKELEARLSQEISLNQYLNKRIsgnsv 1207
Cdd:TIGR02168  217 ELKAELRELELAL--LVLRLEELREELEELQEELKEAEEELEEL------TAELQELEEKLEELRLEVSELEEEI----- 283
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1208 etnisstrrstsysddpldkEDIIKKYYDLQlafTEITRnLENEIEEKKNlisRLRFTETRLASSSFEDQKIKAQMKKLK 1287
Cdd:TIGR02168  284 --------------------EELQKELYALA---NEISR-LEQQKQILRE---RLANLERQLEELEAQLEELESKLDELA 336
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1288 KLIQDMDPsipldsILNEPLDNCPDKESDINKLMLEVDYLKRQLDietrahyDAENAISALHSKFRKIQGESSLSSSDIy 1367
Cdd:TIGR02168  337 EELAELEE------KLEELKEELESLEAELEELEAELEELESRLE-------ELEEQLETLRSKVAQLELQIASLNNEI- 402
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1368 klkfEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRyyklENYKLQEILNESNGKLSQLTLDLRQSK 1447
Cdd:TIGR02168  403 ----ERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE----ELEELQEELERLEEALEELREELEEAE 474
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1448 SKEALLSEQLDRLQKDLESTERQKELLSS------TIKQQKQQFENCMDDL-----------QGNELRLREHIHALkqAE 1510
Cdd:TIGR02168  475 QALDAAERELAQLQARLDSLERLQENLEGfsegvkALLKNQSGLSGILGVLselisvdegyeAAIEAALGGRLQAV--VV 552
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1511 EDVKNMASIIEKLKTQNKQK-----EKLIWEREMERNDSDMQLQET--LLELKRVQDVKKILSDDLAHLKERLSAVEDRS 1583
Cdd:TIGR02168  553 ENLNAAKKAIAFLKQNELGRvtflpLDSIKGTEIQGNDREILKNIEgfLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLD 632
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1584 QYTDEINRLKEELNC-----------------SLKAETNL---KKEFATLKYKLEtstnDSEAKISDLLKQLDHYTKVVE 1643
Cdd:TIGR02168  633 NALELAKKLRPGYRIvtldgdlvrpggvitggSAKTNSSIlerRREIEELEEKIE----ELEEKIAELEKALAELRKELE 708
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1644 MLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLE 1723
Cdd:TIGR02168  709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1724 ETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSdttEKNAWLSKIH 1803
Cdd:TIGR02168  789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE---SLAAEIEELE 865
                          730       740       750       760       770       780       790
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 730092     1804 ELENMVSLETDLKYEEMkknKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEkyISQQELEMK 1880
Cdd:TIGR02168  866 ELIEELESELEALLNER---ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE--LRLEGLEVR 937
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1246-1911 1.18e-11

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 70.13  E-value: 1.18e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1246 RNLENEIEEKKNLISRLRFTETRLASssFEDQKIKAQ-MKKLKKLIQDMDPSIPLDSILNepldncpdKESDINKLMLEV 1324
Cdd:COG1196  179 RKLERTEENLERLEDLLEELEKQLEK--LERQAEKAErYQELKAELRELELALLLAKLKE--------LRKELEELEEEL 248
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1325 DYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKfeaseERVKSLEdklktmplrdrtnlpvGDIIKN 1404
Cdd:COG1196  249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK-----EEIEELE----------------GEISLL 307
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1405 RDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLEsteRQKELLSSTIKQQKQQ 1484
Cdd:COG1196  308 RERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS---ALLEELEELFEALREE 384
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1485 FENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKliweremERNDSDMQLQETLLELKRVQDVKKI 1564
Cdd:COG1196  385 LAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEA-------ELEELQTELEELNEELEELEEQLEE 457
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1565 LSDDLAHLKERLSAVEDR-SQYTDEINRLKEELNcSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVE 1643
Cdd:COG1196  458 LRDRLKELERELAELQEElQRLEKELSSLEARLD-RLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALE 536
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1644 M-LNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQ-------------ELESDLNQKTDALQISNAALSSST 1709
Cdd:COG1196  537 AaLGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPlrslksdaapgflGLASDLIDFDPKYEPAVRFVLGDT 616
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1710 Q--KNKEITEKIKYLeetLQLQMEQNSRNGELV-----------------------KTLQASCNGYKDKFDDEKQKNIDL 1764
Cdd:COG1196  617 LvvDDLEQARRLARK---LRIKYRIVTLDGDLVepsgsitggsrnkrsslaqkrelKELEEELAELEAQLEKLEEELKSL 693
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1765 YEENQTLQKLNTDLQLQLKNLHERLSD--------TTEKNAWLSKIHELENMVSLETDLKYEEMKKNKSLERAVEELQTK 1836
Cdd:COG1196  694 KNELRSLEDLLEELRRQLEELERQLEElkrelaalEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA 773
                        650       660       670       680       690       700       710
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 730092   1837 NSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYISQQELEMKKSIRDNSSYRDKVQEMAQEIEFWKSRYESTM 1911
Cdd:COG1196  774 LAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE 848
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1364-1909 1.63e-11

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 69.79  E-value: 1.63e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1364 SDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPvgdiIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLT--- 1440
Cdd:COG0419  166 LEKYEKLSELLKEVIKEAKAKIEELEGQLSELLE----DIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEerl 241
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1441 LDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASII 1520
Cdd:COG0419  242 AELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELL 321
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1521 EKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAV-EDRSQYTDEINRLKEELNCS 1599
Cdd:COG0419  322 EKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKAlERLKQLEEAIQELKEELAEL 401
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1600 LKAETNLKKEFATLKYKLETSTNDSE------AKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKY-----EALNT 1668
Cdd:COG0419  402 SAALEEIQEELEELEKELEELERELEeleeeiKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHekellELYEL 481
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1669 ECESLKGKIvSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGElvKTLQASCN 1748
Cdd:COG0419  482 ELEELEEEL-SREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKE--KLQLQQLK 558
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1749 GYKDKFDDEKQKNIDLYEENqtlqKLNTDLQLQLKNLHERLSdttEKNAWLSKIHELENmvSLETDLK-YEEMKKNKSLE 1827
Cdd:COG0419  559 EELRQLEDRLQELKELLEEL----RLLRTRKEELEELRERLK---ELKKKLKELEERLS--QLEELLQsLELSEAENELE 629
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1828 RAVEELQTKNSQ---QTDVIELANKNRSEFEEATLKYEAQISDLEKyISQQELEMKKSIRDNSSYRDKVQEMAQEIEFWK 1904
Cdd:COG0419  630 EAEEELESELEKlnlQAELEELLQAALEELEEKVEELEAEIRRELQ-RIENEEQLEEKLEELEQLEEELEQLREELEELL 708

                 ....*
gi 730092   1905 SRYES 1909
Cdd:COG0419  709 KKLGE 713
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
1250-1869 4.81e-11

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 68.07  E-value: 4.81e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1250 NEIEEKKNLISRL---RFTETRLASSSFEDQKIKAQMKKLKKLIQDMDPSIPLDSILNEPLDNCPDKESDINKLMLEVDY 1326
Cdd:TIGR00618  126 SETEEVIHDLLKLdykTFTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQL 205
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1327 LKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDiYKLKFEASEERvKSLEDKLKTMPLRDRTNLPvgdiIKNRD 1406
Cdd:TIGR00618  206 LTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAY-LTQKREAQEEQ-LKKQQLLKQLRARIEELRA----QEAVL 279
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1407 SISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSsTIKQQKQQFE 1486
Cdd:TIGR00618  280 EETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQ-TLHSQEIHIR 358
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1487 NCMD------DLQGNELRLREHIHALKQ----AEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELK 1556
Cdd:TIGR00618  359 DAHEvatsirEISCQQHTLTQHIHTLQQqkttLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQR 438
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1557 RVQDVKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAETNLKKEfaTLKYKLETSTNDSEakisdLLKQLD 1636
Cdd:TIGR00618  439 YAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAV--VLARLLELQEEPCP-----LCGSCI 511
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1637 HYTKVVEMLNNEKDAISLAEKeLYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQIsnaaLSSSTQKNKEIT 1716
Cdd:TIGR00618  512 HPNPARQDIDNPGPLTRRMQR-GEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSI----LTQCDNRSKEDI 586
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1717 EKIKYLEETLQLQMEQNSRngelvktLQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLH---ERLSDTT 1793
Cdd:TIGR00618  587 PNLQNITVRLQDLTEKLSE-------AEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHalqLTLTQER 659
                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 730092     1794 EKNAWL-SKIHELENMVSLETDLKYEEMKKnKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLE 1869
Cdd:TIGR00618  660 VREHALsIRVLPKELLASRQLALQKMQSEK-EQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLA 735
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
862-1152 5.44e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 68.16  E-value: 5.44e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      862 RTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKD 941
Cdd:TIGR02168  685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      942 EISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQ-------SLIKESKLKLE 1014
Cdd:TIGR02168  765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLeslerriAATERRLEDLE 844
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1015 NEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLV---TLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQL 1091
Cdd:TIGR02168  845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNeraSLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 730092     1092 KNKESELLKMKEKIDNHKKELAT-FSKQRDDAVSEHGKITAELKETRIQLTEYKsnyQKIKE 1152
Cdd:TIGR02168  925 AQLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALENKIEDDEEEARRRLKRLE---NKIKE 983
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
1534-1890 8.22e-11

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 67.43  E-value: 8.22e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1534 IWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEdrsqytdEINRLKEELNCslkaetnlkKEFATL 1613
Cdd:COG1196  167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE-------RYQELKAELRE---------LELALL 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1614 KYKLEtstnDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQ 1693
Cdd:COG1196  231 LAKLK----ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISL 306
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1694 KTDALQISNAALSSSTQKNKEITEKI----KYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLYEENQ 1769
Cdd:COG1196  307 LRERLEELENELEELEERLEELKEKIealkEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1770 TLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSLETDLKYEEmkknksLERAVEELQTKNSQQTDVIELANK 1849
Cdd:COG1196  387 ELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE------LQTELEELNEELEELEEQLEELRD 460
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 730092   1850 NRSEFEEATLKYEAQISDLEKYISQQELEMKKSIRDNSSYR 1890
Cdd:COG1196  461 RLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ 501
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1012-1723 1.70e-10

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 66.32  E-value: 1.70e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1012 KLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKncniamSRLQSLVTENSDLRSKNENFKKEKAALNNQL 1091
Cdd:COG0419  168 KYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEE------ELKELKKLEEIQEEQEEEELEQEIEALEERL 241
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1092 KNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKkrns 1171
Cdd:COG0419  242 AELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEEL---- 317
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1172 lveslnDSKIKELEARLSQEISLNQYLNKRISgnsvetnisstrrstsysddplDKEDIIKKYYDLQLAFTEITRNLENE 1251
Cdd:COG0419  318 ------EELLEKLKSLEERLEKLEEKLEKLES----------------------ELEELAEEKNELAKLLEERLKELEER 369
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1252 IEEKKNLISRLRFTETRLASSSfedQKIKAQMKKLKKLIQDMdpsipldsilnepldncpdkESDINKLMLEVDYLKRQL 1331
Cdd:COG0419  370 LEELEKELEKALERLKQLEEAI---QELKEELAELSAALEEI--------------------QEELEELEKELEELEREL 426
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1332 DIETRAHYDAENAISALHSKFRKIQgESSLSSSDIYKLKFEASEERVKSLEDKLKTmplrdrtnlpvgdiiknrdSISKY 1411
Cdd:COG0419  427 EELEEEIKKLEEQINQLESKELMIA-ELAGAGEKCPVCGQELPEEHEKELLELYEL-------------------ELEEL 486
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1412 EEEIRYYKLEnyklQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTI-KQQKQQFENCMD 1490
Cdd:COG0419  487 EEELSREKEE----AELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKeKLQLQQLKEELR 562
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1491 DLQgnelRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLI--WEREMERNDSDMQLQETLLELKRVQDVKKILSDD 1568
Cdd:COG0419  563 QLE----DRLQELKELLEELRLLRTRKEELEELRERLKELKKKLkeLEERLSQLEELLQSLELSEAENELEEAEEELESE 638
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1569 LAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYK------LETSTNDSEAKISDLLKQLDHYTKVV 1642
Cdd:COG0419  639 LEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKleeleqLEEELEQLREELEELLKKLGEIEQLI 718
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1643 EMLNNEKDAISLAEKEL------YQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEIT 1716
Cdd:COG0419  719 EELESRKAELEELKKELeklekaLELLEELREKLGKAGLRADILRNLLAQIEAEANEILSKLSLNRYDLRRLTIRKDGNG 798

                 ....*..
gi 730092   1717 EKIKYLE 1723
Cdd:COG0419  799 GLVVVVY 805
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
853-1290 2.78e-10

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 65.43  E-value: 2.78e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      853 LLTSSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQ 932
Cdd:TIGR04523  175 LNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQ 254
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      933 FDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIkqISDLNCDISKEQSSQSLIKESKLK 1012
Cdd:TIGR04523  255 LNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDW--NKELKSELKNQEKKLEEIQNQISQ 332
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1013 LENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLD---IKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNN 1089
Cdd:TIGR04523  333 NNKIISQLNEQISQLKKELTNSESENSEKQRELEekqNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDE 412
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1090 QLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQR--ETKEQEQK 1167
Cdd:TIGR04523  413 QIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQnlEQKQKELK 492
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1168 KRNSLVESLNDSKiKELEARlsqeislNQYLNKRISgnSVETNISSTRRSTSYSDDPLD--KEDIIKKYYDLQlafteiT 1245
Cdd:TIGR04523  493 SKEKELKKLNEEK-KELEEK-------VKDLTKKIS--SLKEKIEKLESEKKEKESKISdlEDELNKDDFELK------K 556
                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*
gi 730092     1246 RNLENEIEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLI 1290
Cdd:TIGR04523  557 ENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDL 601
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1372-1901 3.06e-10

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 65.55  E-value: 3.06e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1372 EASEERVKSLEDKLKTMP-----LRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQS 1446
Cdd:COG0419  235 EALEERLAELEEEKERLEelkarLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALL 314
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1447 KSKEALLsEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALK----QAEEDVKNMASIIEK 1522
Cdd:COG0419  315 EELEELL-EKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEkeleKALERLKQLEEAIQE 393
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1523 LKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEI----NRLKEELNC 1598
Cdd:COG0419  394 LKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCpvcgQELPEEHEK 473
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1599 SLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIv 1678
Cdd:COG0419  474 ELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKL- 552
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1679 SLTKIKQELE--SDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYK-DKFD 1755
Cdd:COG0419  553 QLQQLKEELRqlEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENElEEAE 632
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1756 DEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLsdTTEKNAWLSKIHELENMVSLETDLKYEEMKKNKSLERAVEELQT 1835
Cdd:COG0419  633 EELESELEKLNLQAELEELLQAALEELEEKVEEL--EAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKK 710
                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 730092   1836 KNSQQTDVIELanknrsefEEATLKYEAQISDLEKYISQQEL--EMKKSIRDNSSYRDKVQEMAQEIE 1901
Cdd:COG0419  711 LGEIEQLIEEL--------ESRKAELEELKKELEKLEKALELleELREKLGKAGLRADILRNLLAQIE 770
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1233-1906 3.78e-10

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 65.47  E-value: 3.78e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1233 KYYDLQ-----LAFTEITRNLENEIEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDmdpsipldsiLNEPL 1307
Cdd:TIGR02169  212 RYQALLkekreYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEE----------LNKKI 281
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1308 DNCPDKE-----SDINKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDI--YKLKFEASEERVKS 1380
Cdd:TIGR02169  282 KDLGEEEqlrvkEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIeeERKRRDKLTEEYAE 361
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1381 LEDKLKTmpLRDRTNLPVGDIIKNRDSISKYEEEIRyyklenyKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRL 1460
Cdd:TIGR02169  362 LKEELED--LRAELEEVDKEFAETRDELKDYREKLE-------KLKREINELKRELDRLQEELQRLSEELADLNAAIAGI 432
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1461 QKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWER--- 1537
Cdd:TIGR02169  433 EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGrav 512
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1538 EMERNDSDMQLQETLLELKRVqDVKKILSDDLAhLKERLSA--VEDRSQYTDEINRLKEElNCSLKAETNLKKEFATLKY 1615
Cdd:TIGR02169  513 EEVLKASIQGVHGTVAQLGSV-GERYATAIEVA-AGNRLNNvvVEDDAVAKEAIELLKRR-KAGRATFLPLNKMRDERRD 589
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1616 KLETSTN----------DSEAKISDLLKQLDHYTKVVEMLNNEKDAISLA-----EKELYQKYEALNTECESLKGKIVSL 1680
Cdd:TIGR02169  590 LSILSEDgvigfavdlvEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYrmvtlEGELFEKSGAMTGGSRAPRGGILFS 669
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1681 TKIKQELESdLNQKTDALQISNAAL-----------SSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNG 1749
Cdd:TIGR02169  670 RSEPAELQR-LRERLEGLKRELSSLqselrrienrlDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1750 YKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDT-------------TEKNAWLSKIHELENMVSLETDLK 1816
Cdd:TIGR02169  749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSripeiqaelskleEEVSRIEARLREIEQKLNRLTLEK 828
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1817 YEEMKKNKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYISQQELEMKKSIRDNSSYRDKVQEM 1896
Cdd:TIGR02169  829 EYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
                          730
                   ....*....|
gi 730092     1897 AQEIEFWKSR 1906
Cdd:TIGR02169  909 EAQIEKKRKR 918
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
861-1190 2.01e-09

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 62.75  E-value: 2.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     861 TRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTqdllnqeKENLRKNESLLNRVKTSSETLQKQFDDLVSEK 940
Cdd:PRK02224  335 VAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEA-------REAVEDRREEIEELEEEIEELRERFGDAPVDL 407
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     941 DEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHS--------------KNNELIKQISDLNCDISKEQSSQSLI 1006
Cdd:PRK02224  408 GNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDL 487
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1007 KESKLKLENEIKRLKDVINSkEEEIKSFNDKLSSSEEDLDIKLVTLEKNcniaMSRLQSLVTENSDLRSKNENfKKEKAA 1086
Cdd:PRK02224  488 EEEVEEVEERLERAEDLVEA-EDRIERLEERREDLEELIAERRETIEEK----RERAEELRERAAELEAEAEE-KREAAA 561
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1087 lnnqlkNKESELLKMKEKIDNHKKELATFSKQRD--DAVSEHGKITAELKETRIQLTEYKSNYQKIKEEysnfQRETKEQ 1164
Cdd:PRK02224  562 ------EAEEEAEEAREEVAELNSKLAELKERIEslERIRTLLAAIADAEDEIERLREKREALAELNDE----RRERLAE 631
                         330       340
                  ....*....|....*....|....*.
gi 730092    1165 EQKKRNSLVESLNDSKIKELEARLSQ 1190
Cdd:PRK02224  632 KRERKRELEAEFDEARIEEAREDKER 657
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
865-1182 2.05e-09

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 62.73  E-value: 2.05e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      865 KFNEQINKLKNDLQEMES----KKKFLEEKNQKtVNELENTQDLLNQEKENLRKNESLLNR----VKTSSETLQKQFDDL 936
Cdd:TIGR04523  339 QLNEQISQLKKELTNSESenseKQRELEEKQNE-IEKLKKENQSYKQEIKNLESQINDLESkiqnQEKLNQQKDEQIKKL 417
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      937 VSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENE 1016
Cdd:TIGR04523  418 QQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1017 IKRLKDVINSKEEEIKSFNDKLSSSEEDLDI----------KLVTLEKNCNIAMSRLQS--LVTENSDLRSKNENFKKEK 1084
Cdd:TIGR04523  498 LKKLNEEKKELEEKVKDLTKKISSLKEKIEKlesekkekesKISDLEDELNKDDFELKKenLEKEIDEKNKEIEELKQTQ 577
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1085 AALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQ 1164
Cdd:TIGR04523  578 KSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEI 657
                          330
                   ....*....|....*...
gi 730092     1165 EQKKRNsLVESLNDSKIK 1182
Cdd:TIGR04523  658 RNKWPE-IIKKIKESKTK 674
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
867-1596 2.79e-09

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 62.29  E-value: 2.79e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      867 NEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKnESLLNRVKTSSETLQKQFDDLVSEKDEISRE 946
Cdd:TIGR00618  211 PCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKK-QQLLKQLRARIEELRAQEAVLEETQERINRA 289
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      947 K-----LEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLncdiskeqssqslikESKLKLENEIKRLK 1021
Cdd:TIGR00618  290 RkaaplAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSI---------------EEQRRLLQTLHSQE 354
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1022 DVINSKEEEIKSFNDKLSSSEEDLDiklvtlekncniamsRLQSLvtensdlrsknenfKKEKAALNNQLKNKESELLKM 1101
Cdd:TIGR00618  355 IHIRDAHEVATSIREISCQQHTLTQ---------------HIHTL--------------QQQKTTLTQKLQSLCKELDIL 405
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1102 KEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQ----LTEYKSNYQKIKEEYSNFQReTKEQEQKKRNSLVESLN 1177
Cdd:TIGR00618  406 QREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCaaaiTCTAQCEKLEKIHLQESAQS-LKEREQQLQTKEQIHLQ 484
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1178 DSKIKELEARLSQEISLNQYLnkrISGNSVETNISSTRRSTSYSDDPLdKEDIIKKYYDLQLAFTEITRNLE---NEIEE 1254
Cdd:TIGR00618  485 ETRKKAVVLARLLELQEEPCP---LCGSCIHPNPARQDIDNPGPLTRR-MQRGEQTYAQLETSEEDVYHQLTserKQRAS 560
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1255 KKNLISRLRFTETRLASssfEDQKIKAQMKKLKKLIQDMDPSIPLDsilnepldncpDKESDinKLMLEVDYLKRQLDIE 1334
Cdd:TIGR00618  561 LKEQMQEIQQSFSILTQ---CDNRSKEDIPNLQNITVRLQDLTEKL-----------SEAED--MLACEQHALLRKLQPE 624
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1335 trahydAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVKSLEDK-LKTMPLRDRTNLPvgDIIKNRDSISKYEE 1413
Cdd:TIGR00618  625 ------QDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRvLPKELLASRQLAL--QKMQSEKEQLTYWK 696
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1414 EIRYYKLEnyKLQEILnESNGKLSQLTLDLRQ-SKSKEALLSEQLDRLQKDLESTERQ-KELLSSTIKQQKQQFENCMDD 1491
Cdd:TIGR00618  697 EMLAQCQT--LLRELE-THIEEYDREFNEIENaSSSLGSDLAAREDALNQSLKELMHQaRTVLKARTEAHFNNNEEVTAA 773
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1492 LQgnelRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQEtllELKRVQDVKKILSDDLAH 1571
Cdd:TIGR00618  774 LQ----TGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQ---EEEQFLSRLEEKSATLGE 846
                          730       740
                   ....*....|....*....|....*
gi 730092     1572 LKERLSAVEDRSQYTDEINRLKEEL 1596
Cdd:TIGR00618  847 ITHQLLKYEECSKQLAQLTQEQAKI 871
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
1430-1880 4.61e-09

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 61.66  E-value: 4.61e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1430 NESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQG----NELRLREHIHa 1505
Cdd:pfam15921  457 NESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKlrsrVDLKLQELQH- 535
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1506 LKQAEEDVKNMASIIEKLKTQNKQKEKLIwerEMERndsdmqlqetllelKRVQDVKKILSDdlaHLKERLSAVEDRSQY 1585
Cdd:pfam15921  536 LKNEGDHLRNVQTECEALKLQMAEKDKVI---EILR--------------QQIENMTQLVGQ---HGRTAGAMQVEKAQL 595
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1586 TDEINRLKEELncslkaetnlkKEFATLKYKLETSTNDSEAKISDLlkQLDHytkvVEMLNNEKDAISlAEKELYQKYEA 1665
Cdd:pfam15921  596 EKEINDRRLEL-----------QEFKILKDKKDAKIRELEARVSDL--ELEK----VKLVNAGSERLR-AVKDIKQERDQ 657
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1666 LNTECESLKGKIVSLTKIKQELESDLNQKTDALQISnaalssstqknkeiTEKIKYLEETLQLQMEQnSRNgeLVKTLQA 1745
Cdd:pfam15921  658 LLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETT--------------TNKLKMQLKSAQSELEQ-TRN--TLKSMEG 720
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1746 ScNGYKDKFDDEKQKNIdlyeenqTLQKLNTD-LQLQLKNLHERLSDTTEKNAWLSkihelENMVSLETDLKYEEMKKNK 1824
Cdd:pfam15921  721 S-DGHAMKVAMGMQKQI-------TAKRGQIDaLQSKIQFLEEAMTNANKEKHFLK-----EEKNKLSQELSTVATEKNK 787
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 730092     1825 slerAVEELQTKNSQQTDVIELANKNRSEFEEATLKYeAQISDLEKYISQQELEMK 1880
Cdd:pfam15921  788 ----MAGELEVLRSQERRLKEKVANMEVALDKASLQF-AECQDIIQRQEQESVRLK 838
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
860-1126 1.27e-08

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 60.47  E-value: 1.27e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      860 MTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQE------------KENLRKNESLLNRV--KTS 925
Cdd:TIGR02169  743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSripeiqaelsklEEEVSRIEARLREIeqKLN 822
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      926 SETLQKQF-----DDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQ 1000
Cdd:TIGR02169  823 RLTLEKEYlekeiQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1001 SSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKL----SSSEEDLDIKlvTLEKNCNIAMSRLQSLvtENSDLRSK 1076
Cdd:TIGR02169  903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKgedeEIPEEELSLE--DVQAELQRVEEEIRAL--EPVNMLAI 978
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 730092     1077 NEnFKKEKAALN------NQLKNKESELLKMKEKIDNHKKE--LATFskqrdDAVSEH 1126
Cdd:TIGR02169  979 QE-YEEVLKRLDelkekrAKLEEERKAILERIEEYEKKKREvfMEAF-----EAINEN 1030
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1479-1854 1.69e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 60.07  E-value: 1.69e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1479 KQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEK---LKTQNKQKEKLIWEREMERNDSdmQLQETLLEL 1555
Cdd:TIGR02168  171 KERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERykeLKAELRELELALLVLRLEELRE--ELEELQEEL 248
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1556 KRVQDVKKILSDDLAHLKERLSAVEDrsqytdEINRLKEELNCSLKAETNLKKEFATLKYKLETStndsEAKISDLLKQL 1635
Cdd:TIGR02168  249 KEAEEELEELTAELQELEEKLEELRL------EVSELEEEIEELQKELYALANEISRLEQQKQIL----RERLANLERQL 318
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1636 DHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEI 1715
Cdd:TIGR02168  319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1716 TEKIKYLEETLQlQMEQNsrngelvktlqascngyKDKFDDEKQKNIDLYEENQtLQKLNTDLQLQLKNLHERLSDTTEK 1795
Cdd:TIGR02168  399 NNEIERLEARLE-RLEDR-----------------RERLQQEIEELLKKLEEAE-LKELQAELEELEEELEELQEELERL 459
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 730092     1796 NAWLSKIHELENMVSLETDLKYEEMKKNKSLERAVEELQTKNSQQTDVIELANKNRSEF 1854
Cdd:TIGR02168  460 EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1453-1801 1.75e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 59.69  E-value: 1.75e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1453 LSEQLDRLQKDLESTERQKELlsstikqqKQQFENCMDDLQGneLRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEK 1532
Cdd:TIGR02168  198 LERQLKSLERQAEKAERYKEL--------KAELRELELALLV--LRLEELREELEELQEELKEAEEELEELTAELQELEE 267
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1533 LIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVE-DRSQYTDEINRLKEELNCSLKAETNLKKEFA 1611
Cdd:TIGR02168  268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLErQLEELEAQLEELESKLDELAEELAELEEKLE 347
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1612 TLKykletstndseAKISDLLKQLDHYTKVVEMLNNekdaislAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDL 1691
Cdd:TIGR02168  348 ELK-----------EELESLEAELEELEAELEELES-------RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1692 NQKTDALQ-----ISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQAScngykdkfddEKQKNIDLYE 1766
Cdd:TIGR02168  410 ERLEDRRErlqqeIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE----------LEEAEQALDA 479
                          330       340       350
                   ....*....|....*....|....*....|....*..
gi 730092     1767 ENQTLQKLNTDLQLqLKNLHERLSDTTE--KNAWLSK 1801
Cdd:TIGR02168  480 AERELAQLQARLDS-LERLQENLEGFSEgvKALLKNQ 515
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1444-1902 1.80e-08

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 59.77  E-value: 1.80e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1444 RQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQfenCMDDLQGNELRLREHIHALKQAEEdvKNMASIIEKL 1523
Cdd:COG0419  156 RKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSE---LLEDIEDLLEALEEELKELKKLEE--IQEEQEEEEL 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1524 KTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAE 1603
Cdd:COG0419  231 EQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGL 310
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1604 TNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKI 1683
Cdd:COG0419  311 RALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEA 390
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1684 KQELESDLNQKTDALQ-------ISNAALSSSTQKNKEITEKIKYLEETLQlQMEQNSRNGELVKTLQASCNGYKDKFDD 1756
Cdd:COG0419  391 IQELKEELAELSAALEeiqeeleELEKELEELERELEELEEEIKKLEEQIN-QLESKELMIAELAGAGEKCPVCGQELPE 469
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1757 EKQKNIDLYEE-------------------NQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSLETDLKY 1817
Cdd:COG0419  470 EHEKELLELYEleleeleeelsrekeeaelREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELK 549
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1818 EEMKKN--KSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKyEAQISDLEKYISQQELEMKKSIRDNSSYRDKVQE 1895
Cdd:COG0419  550 EKLQLQqlKEELRQLEDRLQELKELLEELRLLRTRKEELEELRER-LKELKKKLKELEERLSQLEELLQSLELSEAENEL 628

                 ....*..
gi 730092   1896 MAQEIEF 1902
Cdd:COG0419  629 EEAEEEL 635
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
888-1556 3.32e-08

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 58.92  E-value: 3.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     888 EEKNQKTVNELENTQDLLNQEKeNLRKNESLLNRVKTSSETLQKQ---FDDLVSEKDEISREKLEVAQNLEEAHQKIQGL 964
Cdd:PRK03918  144 DESREKVVRQILGLDDYENAYK-NLGEVIKEIKRRIERLEKFIKRtenIEELIKEKEKELEEVLREINEISSELPELREE 222
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     965 QETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDvinsKEEEIKSFNDKlssseED 1044
Cdd:PRK03918  223 LEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEE----KVKELKELKEK-----AE 293
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1045 LDIKLVTLEKNCNiamSRLQSLVTENSDLRSKNENFKKEKAALNNqLKNKESELLKMKEKIDNHKKELATFSKQRDDAVS 1124
Cdd:PRK03918  294 EYIKLSEFYEEYL---DELREIEKRLSRLEEEINGIEERIKELEE-KEERLEELKKKLKELEKRLEELEERHELYEEAKA 369
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1125 ehgkITAELKETRIQLTEYksNYQKIKEEYSNFQRETKEQEQkkrnslveslndsKIKELEARLSQeislnqyLNKRIsg 1204
Cdd:PRK03918  370 ----KKEELERLKKRLTGL--TPEKLEKELEELEKAKEEIEE-------------EISKITARIGE-------LKKEI-- 421
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1205 NSVETNISSTRRSTSY------SDDPLDKEDIIKKYydlqlafteiTRNLENEIEEKKNLISRLRftetrlasssfedqK 1278
Cdd:PRK03918  422 KELKKAIEELKKAKGKcpvcgrELTEEHRKELLEEY----------TAELKRIEKELKEIEEKER--------------K 477
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1279 IKAQMKKLKKLIQDMDPSIPLDSILNEpLDNCPDKESDINKLMLEVDYLKRQLdietrahydaenaisaLHSKFRKIQGE 1358
Cdd:PRK03918  478 LRKELRELEKVLKKESELIKLKELAEQ-LKELEEKLKKYNLEELEKKAEEYEK----------------LKEKLIKLKGE 540
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1359 SSLSSSDIYKLkfEASEERVKSLEDKLKTMPlRDRTNLPVGDIIKNRDSISKYEEEIRyyklenyKLQEILNESNgKLSQ 1438
Cdd:PRK03918  541 IKSLKKELEKL--EELKKKLAELEKKLDELE-EELAELLKELEELGFESVEELEERLK-------ELEPFYNEYL-ELKD 609
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1439 LTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQF-ENCMDDLQGNELRLREHIHA----LKQAEEDV 1513
Cdd:PRK03918  610 AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYsEEEYEELREEYLELSRELAGlraeLEELEKRR 689
                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*
gi 730092    1514 KNMASIIEKLKTQNKQKEKLIWERE-MERNDSDMQ-LQETLLELK 1556
Cdd:PRK03918  690 EEIKKTLEKLKEELEEREKAKKELEkLEKALERVEeLREKVKKYK 734
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
870-1158 4.43e-08

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 58.57  E-value: 4.43e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      870 INKLKNDLQEmesKKKFLEEKNQKtVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQfddlVSEKD---EISRE 946
Cdd:pfam15921  498 VSDLTASLQE---KERAIEATNAE-ITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQ----MAEKDkviEILRQ 569
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      947 KLEVAQNLEEAHQKIQG--------LQETIREREATLEKLH-------SKNNELIKQISDLNCDISK--EQSSQSL---- 1005
Cdd:pfam15921  570 QIENMTQLVGQHGRTAGamqvekaqLEKEINDRRLELQEFKilkdkkdAKIRELEARVSDLELEKVKlvNAGSERLravk 649
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1006 -IKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEK 1084
Cdd:pfam15921  650 dIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVA 729
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1085 AALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRI-------QLTEYKSNYQKIKEEYSNF 1157
Cdd:pfam15921  730 MGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATeknkmagELEVLRSQERRLKEKVANM 809

                   .
gi 730092     1158 Q 1158
Cdd:pfam15921  810 E 810
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
925-1705 4.80e-08

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 58.19  E-value: 4.80e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      925 SSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDlncdisKEQSSQS 1004
Cdd:pfam05483   72 NSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEE------EIQENKD 145
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1005 LIKESklkleNEIKRLKDVInsKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIamsrlQSLVTENSDLRSKNENFKKEk 1084
Cdd:pfam05483  146 LIKEN-----NATRHLCNLL--KETCARSAEKTKKYEYEREETRQVYMDLNNNI-----EKMILAFEELRVQAENARLE- 212
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1085 aaLNNQLKNKESELLKMKEKidnHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIkEEYSNFQRETKEQ 1164
Cdd:pfam05483  213 --MHFKLKEDHEKIQHLEEE---YKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQL-EEKTKLQDENLKE 286
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1165 EQKKRNSLVESLNDSKIkELEARLSQEISLNQYLNkrisgnsvetnISSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEI 1244
Cdd:pfam05483  287 LIEKKDHLTKELEDIKM-SLQRSMSTQKALEEDLQ-----------IATKTICQLTEEKEAQMEELNKAKAAHSFVVTEF 354
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1245 TRNLENEIEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDPSIP-LDSILNEPlDNCPDKESDINKLMLE 1323
Cdd:pfam05483  355 EATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEeLKKILAED-EKLLDEKKQFEKIAEE 433
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1324 VDYLKRQLDIETRAHydaENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVKSLEdklktmplrdrtnlpvgdIIK 1403
Cdd:pfam05483  434 LKGKEQELIFLLQAR---EKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIE------------------LTA 492
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1404 NRDSISkyeeeiryykLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQkdlESTERQKELLSSTIKQQKQ 1483
Cdd:pfam05483  493 HCDKLL----------LENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLE---EKEMNLRDELESVREEFIQ 559
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1484 QFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKK 1563
Cdd:pfam05483  560 KGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVN 639
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1564 ILSDDLAHLKERLSAVEDRSQYTDEINRLKEE-LNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDH-YTKV 1641
Cdd:pfam05483  640 KLELELASAKQKFEEIIDNYQKEIEDKKISEEkLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHqYDKI 719
                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 730092     1642 VEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKiKQELESDLNQKTDALQISNAAL 1705
Cdd:pfam05483  720 IEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKK-QLEIEKEEKEKLKMEAKENTAI 782
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
1370-1919 5.63e-08

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 58.11  E-value: 5.63e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1370 KFEASEERVKSLEDKLKTMplRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSK 1449
Cdd:TIGR04523   76 KIKILEQQIKDLNDKLKKN--KDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKE 153
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1450 EALLSEQLDRLQKDLESTERQKELLsstiKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQ 1529
Cdd:TIGR04523  154 LEKLNNKYNDLKKQKEELENELNLL----EKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQ 229
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1530 KEKLIWEREMERNDSDMQLQETLLELKRV----QDVKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAETN 1605
Cdd:TIGR04523  230 LKDNIEKKQQEINEKTTEISNTQTQLNQLkdeqNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWN 309
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1606 --LKKEFATLKYKLETSTND---SEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSL 1680
Cdd:TIGR04523  310 keLKSELKNQEKKLEEIQNQisqNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNL 389
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1681 TKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQK 1760
Cdd:TIGR04523  390 ESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQ 469
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1761 ----NIDLYEENQTLQKLNTDLQL---QLKNLHERLSDTTEKNAWL-SKIHELENMVSLETDLKYEEMKKNKSLERAVEE 1832
Cdd:TIGR04523  470 lkvlSRSINKIKQNLEQKQKELKSkekELKKLNEEKKELEEKVKDLtKKISSLKEKIEKLESEKKEKESKISDLEDELNK 549
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1833 LQT--KNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYISQQELEMKKSIRDNSSYRDKVQEMAQEIEFWKSRYEST 1910
Cdd:TIGR04523  550 DDFelKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKL 629

                   ....*....
gi 730092     1911 MIGSKNIDS 1919
Cdd:TIGR04523  630 SSIIKNIKS 638
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
1017-1921 1.04e-07

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 57.37  E-value: 1.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1017 IKRLKDVINSKE----EEIKSFNDKLSSSEEDLDIKLVT-----LEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAAL 1087
Cdd:TIGR01612  502 MKDFKDIIDFMElykpDEVPSKNIIGFDIDQNIKAKLYKeieagLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEI 581
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1088 NNqLKNKESEL-----------LKMKEKIDN--HKKELATFSKQRDDAVSEHGKITAELKETR-IQLTEYKSN----YQK 1149
Cdd:TIGR01612  582 KD-LFDKYLEIddeiiyinklkLELKEKIKNisDKNEYIKKAIDLKKIIENNNAYIDELAKISpYQVPEHLKNkdkiYST 660
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1150 IKEEYSNFQRETKEQEQKKRNSLVESlNDSKIKELEARLSQEISLNQYLNKRISGNSVETNISSTRRSTSYSDDPLDKED 1229
Cdd:TIGR01612  661 IKSELSKIYEDDIDALYNELSSIVKE-NAIDNTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDIIV 739
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1230 IIKKYYdlqlaFTEITRNLENEIEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDmdpSIPLDSILNEPLDN 1309
Cdd:TIGR01612  740 EIKKHI-----HGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYND---QINIDNIKDEDAKQ 811
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1310 CPD-----------KESDINKLMLEVDYLKRQLDIETRAHYDAEN----AISALHSKF----RKIQGESSLSSSDIYKLK 1370
Cdd:TIGR01612  812 NYDkskeyiktisiKEDEIFKIINEMKFMKDDFLNKVDKFINFENnckeKIDSEHEQFaeltNKIKAEISDDKLNDYEKK 891
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1371 FEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSISkyeEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSK- 1449
Cdd:TIGR01612  892 FNDSKSLINEINKSIEEEYQNINTLKKVDEYIKICENTK---ESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKf 968
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1450 EALLSEQLDRLQKDLesterqKELLSSTIKQQKQQFENCMDDLQGNELRLREHIhALKQAEEDVKNMASIIEKLKTQNKQ 1529
Cdd:TIGR01612  969 DNTLIDKINELDKAF------KDASLNDYEAKNNELIKYFNDLKANLGKNKENM-LYHQFDEKEKATNDIEQKIEDANKN 1041
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1530 K---EKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSD--DLAHLKERLS-------AVEDRSQYTDEINRLKEEL- 1596
Cdd:TIGR01612 1042 IpniEIAIHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINitNFNEIKEKLKhynfddfGKEENIKYADEINKIKDDIk 1121
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1597 NCSLKAETNLKkEFATLKYKLETSTNDSEAKISDLLKQLDH--YTKVVEMLNNEKDAISLA---EKELYQKYEALNTECE 1671
Cdd:TIGR01612 1122 NLDQKIDHHIK-ALEEIKKKSENYIDEIKAQINDLEDVADKaiSNDDPEEIEKKIENIVTKidkKKNIYDEIKKLLNEIA 1200
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1672 SLKGKIVSLTKIK-------QELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQ 1744
Cdd:TIGR01612 1201 EIEKDKTSLEEVKginlsygKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFN 1280
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1745 ASCNGYKDKF----------DDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSL--- 1811
Cdd:TIGR01612 1281 ISHDDDKDHHiiskkhdeniSDIREKSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKLnki 1360
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1812 --------ETDLKYEEMKKN-KSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQ-ISDLEKYISQQELEMKK 1881
Cdd:TIGR01612 1361 kkiidevkEYTKEIEENNKNiKDELDKSEKLIKKIKDDINLEECKSKIESTLDDKDIDECIKkIKELKNHILSEESNIDT 1440
                          970       980       990      1000
                   ....*....|....*....|....*....|....*....|
gi 730092     1882 SIRDNSSYRDKVQEMAQEIEFWKSRYESTMIGSKNIDSNN 1921
Cdd:TIGR01612 1441 YFKNADENNENVLLLFKNIEMADNKSQHILKIKKDNATND 1480
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
860-1595 2.33e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 56.23  E-value: 2.33e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      860 MTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSE 939
Cdd:TIGR02169  356 TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAK 435
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      940 KDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESklklENEIKR 1019
Cdd:TIGR02169  436 INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER----VRGGRA 511
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1020 LKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTlekncnIAMSRLQSLVTENSDLRSKNENFKKEKAA-------LNnqlk 1092
Cdd:TIGR02169  512 VEEVLKASIQGVHGTVAQLGSVGERYATAIEV------AAGNRLNNVVVEDDAVAKEAIELLKRRKAgratflpLN---- 581
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1093 nkesellKMKekidnhkkelatfSKQRD-DAVSEHGKItaelkETRIQLTEYKSNYQKIkeeYSNFQRETkeqeqkkrnS 1171
Cdd:TIGR02169  582 -------KMR-------------DERRDlSILSEDGVI-----GFAVDLVEFDPKYEPA---FKYVFGDT---------L 624
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1172 LVESLNDSKIKELEARLsqeISLNQYLNKR---ISGNSVETNISSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRnL 1248
Cdd:TIGR02169  625 VVEDIEAARRLMGKYRM---VTLEGELFEKsgaMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRR-I 700
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1249 ENEIEEKKNLISRLrftETRLASSSFEDQKIKAQMKKLKKLIQDMDPSIpldSILNEPLDNcpdKESDINKLMLEVDYLK 1328
Cdd:TIGR02169  701 ENRLDELSQELSDA---SRKIGEIEKEIEQLEQEEEKLKERLEELEEDL---SSLEQEIEN---VKSELKELEARIEELE 771
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1329 RQLDietrAHYDAENAISA--LHSKFRKIQGESSlsssdiyKLKFEAS--EERVKSLEDKLKTMP-----LRDRTNLPVG 1399
Cdd:TIGR02169  772 EDLH----KLEEALNDLEArlSHSRIPEIQAELS-------KLEEEVSriEARLREIEQKLNRLTlekeyLEKEIQELQE 840
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1400 DIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLtldlrqsKSKEALLSEQLDRLQKDLESTERQKELLSSTIK 1479
Cdd:TIGR02169  841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL-------ESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1480 QQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASiIEKLKtqnKQKEKLiwEREMER-NDSDMQLQEtllELKRV 1558
Cdd:TIGR02169  914 KKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS-LEDVQ---AELQRV--EEEIRAlEPVNMLAIQ---EYEEV 984
                          730       740       750
                   ....*....|....*....|....*....|....*..
gi 730092     1559 QDVKKILSDDLAHLKERLSAVEDRsqyTDEINRLKEE 1595
Cdd:TIGR02169  985 LKRLDELKEKRAKLEEERKAILER---IEEYEKKKRE 1018
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
862-1211 2.86e-07

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 223496 [Multi-domain]  Cd Length: 908  Bit Score: 55.92  E-value: 2.86e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    862 RTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETL------------ 929
Cdd:COG0419  383 RLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIaelagagekcpv 462
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    930 ---------QKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISD--LNCDISK 998
Cdd:COG0419  463 cgqelpeehEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEklEKLENLL 542
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    999 EQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSE--EDLDIKLVTLEKNCNIAMSRLQSLVTE------- 1069
Cdd:COG0419  543 EELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEelEELRERLKELKKKLKELEERLSQLEELlqslels 622
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1070 --NSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSK--QRDDAVSEHGKITAELKETRIQLTEYK- 1144
Cdd:COG0419  623 eaENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRelQRIENEEQLEEKLEELEQLEEELEQLRe 702
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 730092   1145 --SNYQKIKEEYSNFQRETKEQEQKKRNSLveslndSKIKELEARLSQEISLNQYLNKRISGNSVETNI 1211
Cdd:COG0419  703 elEELLKKLGEIEQLIEELESRKAELEELK------KELEKLEKALELLEELREKLGKAGLRADILRNL 765
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
922-1157 3.11e-07

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 55.32  E-value: 3.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     922 VKTSSETLQK----QFDDLvseKDEISREKLEvaqnleEAHQKIQGLQETIrereATLEKLHSKNNELIKQISDLncdis 997
Cdd:PRK05771   18 KDEVLEALHElgvvHIEDL---KEELSNERLR------KLRSLLTKLSEAL----DKLRSYLPKLNPLREEKKKV----- 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     998 KEQSSQSLIKESK---LKLENEIKRLKDVINSKEEEIKSFNDKLSSSE--EDLDIKLVTL--EKNCNIAMSRLQSLVTEN 1070
Cdd:PRK05771   80 SVKSLEELIKDVEeelEKIEKEIKELEEEISELENEIKELEQEIERLEpwGNFDLDLSLLlgFKYVSVFVGTVPEDKLEE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1071 SDLRSKNENFKKEK----------AALNNQLKNKESELLKM-------------KEKIDNHKKELATFSKQRDDAVSEHG 1127
Cdd:PRK05771  160 LKLESDVENVEYIStdkgyvyvvvVVLKELSDEVEEELKKLgferleleeegtpSELIREIKEELEEIEKERESLLEELK 239
                         250       260       270
                  ....*....|....*....|....*....|
gi 730092    1128 KITAELKETRIQLTEYKSNYQKIKEEYSNF 1157
Cdd:PRK05771  240 ELAKKYLEELLALYEYLEIELERAEALSKF 269
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
877-1808 5.17e-07

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 55.17  E-value: 5.17e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      877 LQEMESKKKFLEEKNQKTVNE----LENTQDLLNQ-EKENLRKNESLLNRVKTSSE---------TLQKQFDDLVSEKDE 942
Cdd:pfam01576   77 LHELEARLEEEEERSQQLQNEkkkmQQHIQDLEEQlEEEEAARQKLQLEKVTTEAKikkmeedilLLEDQNNKLQKERKL 156
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      943 ISREKLEVAQNLEEAHQKIQGLQetirereatleKLHSKNNELIkqiSDLNCDISKEQSSQSLIKESKLKLENEIKRLKD 1022
Cdd:pfam01576  157 LEERISEFTSNLAEEEEKSKSLN-----------KLKNKHEAMI---SDLEDRLKKEEKGRQELEKAKRKLEGESSDLQE 222
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1023 VINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNC---NIAMSRLQSLVTENSDL-------RSKNENFKKEKAALNNQLK 1092
Cdd:pfam01576  223 QIAELQAQIAELRAQLAKKEEELQAALARLEEETaqkNAALKKLRELEAQLSELqedleseRAARAKAEKQRRDLGEELE 302
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1093 NKESELL--------------KMKEKIDNHKKELATFSKQRDDAVSE----HGKITAELKETRIQLTEYKSNYQKIK--- 1151
Cdd:pfam01576  303 ALKTELEdtldttaaqqelrsKREQEVTELKKALEEETRSHEAQLQEmrqkHTQALEELTEQLEQAKRNKASLEKAKqal 382
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1152 -EEYSNFQRETK-------EQEQKKRNSlveslnDSKIKELEARLSQEISLNQYLNKRISG------------NSVETNI 1211
Cdd:pfam01576  383 eSENAELQAELRslqqakqDSEHKRKKL------EGQLQELQSRLSESERQRAELAEKLSKlqselesvssllNEAEGKN 456
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1212 SSTRRSTSYSDDPL-DKEDIIKKYYDLQLAFTEITRNLEneiEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLI 1290
Cdd:pfam01576  457 IKLSKDVSSLESQLqDTQELLQEETRQKLNLSSRLRQLE---DEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKKL 533
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1291 QDMDPSIPLdsilnepldncpdKESDINKLMLEVDYLKRQLDiETRAHYDaenaisALHSKFRKIQGESSLSSSDIYKLK 1370
Cdd:pfam01576  534 EEDAGAVEA-------------LEEGRKRLQRELEALTQRLE-EKAAAYD------KLEKTKNRLQQELDDLLVDLDHQR 593
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1371 feaseERVKSLEDKLKTMP--LRDRTNLPVgdiiKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKS 1448
Cdd:pfam01576  594 -----QLVSNLEKKQKKFDqmLAEEKAISA----RYAEERDRAEAEAREKETKALSLARALEEALDAKEELERQNKQLRA 664
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1449 K-EALLSEQlDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNE---LRLREHIHALK-QAEEDVKNMASIIEKL 1523
Cdd:pfam01576  665 EmEDLVSSK-DDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEdakLRLEVNMQALKaQFERDLQARDEQGEEK 743
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1524 KTQ-NKQKEKLIWEREMERND---------------SDMQLQ---------ETLLELKRVQ-----------DVK----- 1562
Cdd:pfam01576  744 RRQlVKQVRELEAELEDERKQraqavaakkkleldlKELEAQieaankgrdEAVKQLKKLQaqmkdlqreldEARasrde 823
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1563 ------------KILSDDLAHLKERLSAVED-RSQYTDEINRLKEELNCSLKAETNLKKEfatlKYKLetstndsEAKIS 1629
Cdd:pfam01576  824 ifaqskesekklKSLEAELLQLQEDLAAAERaRRQAQQERDELAEEIASGNSGKSALLDE----KRRL-------EARIA 892
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1630 DLLKQLDHYTKVVEMLNNEkdaislaEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSST 1709
Cdd:pfam01576  893 QLEEELEEEQSNTELLNDR-------LRKLTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGTVKSKY 965
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1710 QKNKEITE-KIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKqKNIDLYEENqtLQKLNTDLQLQLKNLHER 1788
Cdd:pfam01576  966 KSSIAALEaKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDER-RNADQYKDQ--AEKGNSRLKQLKRQLEEA 1042
                         1050      1060
                   ....*....|....*....|.
gi 730092     1789 LSDTTEKNAWLSKIH-ELENM 1808
Cdd:pfam01576 1043 EEEASRANAARRKLQrELDDA 1063
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
870-1160 5.77e-07

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 55.05  E-value: 5.77e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      870 INKLKNDLQEMESKKKFLEEKNQKTVNELENTQdlLNQEKEN----LRKNESLLNRVKTSSETLQKQFDDLVSEKDEISR 945
Cdd:TIGR00606  794 MERFQMELKDVERKIAQQAAKLQGSDLDRTVQQ--VNQEKQEkqheLDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKS 871
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      946 EKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVIN 1025
Cdd:TIGR00606  872 EKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVK 951
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1026 SKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTE-NSDLRSKNENF---KKEKAALNNQLKnkeseLLKM 1101
Cdd:TIGR00606  952 NIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKiNEDMRLMRQDIdtqKIQERWLQDNLT-----LRKR 1026
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 730092     1102 KEKIDNHKKELATFSKQRDDavsehgkitaelketrIQLTEYKSNYQKIKEEYSNFQRE 1160
Cdd:TIGR00606 1027 ENELKEVEEELKQHLKEMGQ----------------MQVLQMKQEHQKLEENIDLIKRN 1069
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1033-1442 6.16e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 54.69  E-value: 6.16e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1033 SFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKEL 1112
Cdd:TIGR02169  667 LFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1113 ATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLnDSKIKELEARLSQEI 1192
Cdd:TIGR02169  747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRI-EARLREIEQKLNRLT 825
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1193 SLNQYLNKRISGnsvetnisstrrSTSYSDDPLDKEDIIKKYYDLQLAFTEitrNLENEIEEKKNlisRLRFTETRLASS 1272
Cdd:TIGR02169  826 LEKEYLEKEIQE------------LQEQRIDLKEQIKSIEKEIENLNGKKE---ELEEELEELEA---ALRDLESRLGDL 887
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1273 SFEDQKIKAQMKKLKKLIQDMDPSI----PLDSILNEPLDNCPDKESDINKLMLE-VDYLKRQLDIET-RAHYDA-ENAI 1345
Cdd:TIGR02169  888 KKERDELEAQLRELERKIEELEAQIekkrKRLSELKAKLEALEEELSEIEDPKGEdEEIPEEELSLEDvQAELQRvEEEI 967
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1346 SALHS-KFRKIQgesslsssdiyklKFEASEERVKSLEDKLKTMpLRDRTNLpvgdiiknRDSISKYEEEIRYYKLE--- 1421
Cdd:TIGR02169  968 RALEPvNMLAIQ-------------EYEEVLKRLDELKEKRAKL-EEERKAI--------LERIEEYEKKKREVFMEafe 1025
                          410       420
                   ....*....|....*....|...
gi 730092     1422 --NYKLQEILNESNGKLSQLTLD 1442
Cdd:TIGR02169 1026 aiNENFNEIFAELSGGTGELILE 1048
HEC1 COG5185
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ...
875-1199 8.00e-07

Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227512 [Multi-domain]  Cd Length: 622  Bit Score: 54.22  E-value: 8.00e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    875 NDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKlevaQNL 954
Cdd:COG5185  250 NYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMK----QKS 325
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    955 EEAHQKIQGLQETIREREATLEKLHSKNNELIKQISdlNCDISKEQSSQSLIKESKL-----KLENEIKRLKDVINSKEE 1029
Cdd:COG5185  326 QEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR--KQGISTEQFELMNQEREKLtreldKINIQSDKLTKSVKSRKL 403
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1030 EIKSFNDKLssseEDLDIKLVTLEKNCNIAMSRLQSLVtENSDLRSKNENFKKEKAALNNQLKNKESEL-LKMKEKIDNH 1108
Cdd:COG5185  404 EAQGIFKSL----EKTLRQYDSLIQNITRSRSQIGHNV-NDSSLKINIEQLFPKGSGINESIKKSILELnDEIQERIKTE 478
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1109 KKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVES--LNDSKIKELEA 1186
Cdd:COG5185  479 ENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLnlLSKTSILDAEQ 558
                        330
                 ....*....|....
gi 730092   1187 RL-SQEISLNQYLN 1199
Cdd:COG5185  559 LVqSTEIKLDELKV 572
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
1071-1789 8.52e-07

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 53.96  E-value: 8.52e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1071 SDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATF-------SKQRDDAVSEHGKITAELKETRIQLTEY 1143
Cdd:pfam05483   81 SKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELqfenekvSLKLEEEIQENKDLIKENNATRHLCNLL 160
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1144 KSNYQKIKEEYSNFQRETKEQEQ------KKRNSLVESLNDSKIKELEARLSQEISLNQYLNKrisgnsvetnISSTRRS 1217
Cdd:pfam05483  161 KETCARSAEKTKKYEYEREETRQvymdlnNNIEKMILAFEELRVQAENARLEMHFKLKEDHEK----------IQHLEEE 230
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1218 TsysddpldKEDIIKKYYDLQLAFTEITrnleneieEKKNLISRLRF--TETRLASSSFEdQKIKAQMKKLKKLIQDMDP 1295
Cdd:pfam05483  231 Y--------KKEINDKEKQVSLLLIQIT--------EKENKMKDLTFllEESRDKANQLE-EKTKLQDENLKELIEKKDH 293
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1296 sipldsiLNEPLDncpDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIyklkfeasE 1375
Cdd:pfam05483  294 -------LTKELE---DIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEF--------E 355
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1376 ERVKSLEDKLKTMPLRdrtnlpvgdIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQsksKEALLSE 1455
Cdd:pfam05483  356 ATTCSLEELLRTEQQR---------LEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAE---DEKLLDE 423
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1456 --QLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELrlrehiHALKQaeedVKNMASIIEKLKTQNKQKEKL 1533
Cdd:pfam05483  424 kkQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEE------HYLKE----VEDLKTELEKEKLKNIELTAH 493
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1534 IWEREMERNDSDMQLQETLLELKRVQ-DVKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEEL-------NCSLKAETN 1605
Cdd:pfam05483  494 CDKLLLENKELTQEASDMTLELKKHQeDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFiqkgdevKCKLDKSEE 573
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1606 LKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQ 1685
Cdd:pfam05483  574 NARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFE 653
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1686 ELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQnsRNGELVKTLQASCNGYkDKFDDEKQKNIDLY 1765
Cdd:pfam05483  654 EIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH--KIAEMVALMEKHKHQY-DKIIEERDSELGLY 730
                          730       740
                   ....*....|....*....|....*
gi 730092     1766 EENQTLQ-KLNTDLQLQLKNLHERL 1789
Cdd:pfam05483  731 KNKEQEQsSAKAALEIELSNIKAEL 755
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
1122-1926 9.25e-07

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 54.21  E-value: 9.25e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1122 AVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKrnslvesLNDSKIKELEARLSQEISLNQYLNKR 1201
Cdd:pfam02463  163 AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKA-------LEYYQLKEKLELEEEYLLYLDYLKLN 235
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1202 ISgnsvetnisstrRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRNLENEIEEKKNLISRLRFTETRLASSSFEDQKIKA 1281
Cdd:pfam02463  236 EE------------RIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 303
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1282 QMKKLKKLIQDmdpsipldsILNEPLDNCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISALhskfRKIQGESSL 1361
Cdd:pfam02463  304 KLERRKVDDEE---------KLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEEL----EKLQEKLEQ 370
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1362 SSSDIYKLKFEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSI-SKYEEEIRYYKLENYKLQEILNESNGKLSQLT 1440
Cdd:pfam02463  371 LEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLeDLLKEEKKEELEILEEEEESIELKQGKLTEEK 450
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1441 LDLRQSKSKEALLSEQLDRLQKDLESTerQKELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASII 1520
Cdd:pfam02463  451 EELEKQELKLLKDELELKKSEDLLKET--QLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAH 528
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1521 EKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVE--DRSQYTDEINRLKEELNc 1598
Cdd:pfam02463  529 GRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKlpLKSIAVLEIDPILNLAQ- 607
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1599 slkaetnlkKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIV 1678
Cdd:pfam02463  608 ---------LDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEI 678
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1679 SLTKIKQELESDLNQKTDALQ-ISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDE 1757
Cdd:pfam02463  679 QELQEKAESELAKEEILRRQLeIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLK 758
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1758 KQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSLETDLKYEEMKK-----NKSLERAVEE 1832
Cdd:pfam02463  759 KEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLieqeeKIKEEELEEL 838
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1833 LQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYISQQELEMKKsirdNSSYRDKVQEMAQEIEFWKSRYESTMI 1912
Cdd:pfam02463  839 ALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDE----LESKEEKEKEEKKELEEESQKLNLLEE 914
                          810
                   ....*....|....
gi 730092     1913 GSKNIDSNNAQSKI 1926
Cdd:pfam02463  915 KENEIEERIKEEAE 928
PTZ00121 PTZ00121
MAEBL; Provisional
864-1184 1.09e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 53.99  E-value: 1.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     864 KKFNEQINKLKNDLQEMESKKKflEEKNQKTVNELENTQDLlNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEI 943
Cdd:PTZ00121 1470 KKADEAKKKAEEAKKADEAKKK--AEEAKKKADEAKKAAEA-KKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     944 SREKLEVAQNLEEAHQKIQGLQETIRE--------REATLEKLHSKNNELIKQISDLNCDISKEQ---SSQSLIKESKLK 1012
Cdd:PTZ00121 1547 KADELKKAEELKKAEEKKKAEEAKKAEedknmalrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEakkAEEAKIKAEELK 1626
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1013 LENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKK--EKAALNNQ 1090
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKeaEEAKKAEE 1706
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1091 LKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELK---ETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQK 1167
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKkdeEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD 1786
                         330
                  ....*....|....*..
gi 730092    1168 KRNSLVESLNDSKIKEL 1184
Cdd:PTZ00121 1787 EEDEKRRMEVDKKIKDI 1803
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
1412-1909 1.28e-06

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 53.63  E-value: 1.28e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1412 EEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSStikqQKQQFENCMDD 1491
Cdd:pfam01576    4 EEEMQAKEEELQKVKEKQQKAESELKELEKKHQQLCEEKNILAEQLQAETELFAEAEEMRARLAA----RKQELEEILHE 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1492 LqgnELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAH 1571
Cdd:pfam01576   80 L---EARLEEEEERSQQLQNEKKKMQQHIQDLEEQLEEEEAARQKLQLEKVTTEAKIKKMEEDILLLEDQNNKLQKERKL 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1572 LKERLSAVEdrSQYTDE------INRLKE-------ELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHY 1638
Cdd:pfam01576  157 LEERISEFT--SNLAEEeeksksLNKLKNkheamisDLEDRLKKEEKGRQELEKAKRKLEGESSDLQEQIAELQAQIAEL 234
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1639 TKVVEMLNNE-KDAISLAEKELYQKYEA-------------LNTECESLKGKIVSLTKIKQELESDLNQ-KT---DALQI 1700
Cdd:pfam01576  235 RAQLAKKEEElQAALARLEEETAQKNAAlkklreleaqlseLQEDLESERAARAKAEKQRRDLGEELEAlKTeleDTLDT 314
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1701 SNAALSSSTQKNKEITEKIKYLEE---------------------TLQLQMEQNSRN-GELVKTLQAScngykdkfddeK 1758
Cdd:pfam01576  315 TAAQQELRSKREQEVTELKKALEEetrsheaqlqemrqkhtqaleELTEQLEQAKRNkASLEKAKQAL-----------E 383
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1759 QKNIDLYEENQTLQKLNTD-------LQLQLKNLHERLSDT----TEKNAWLSKIH-ELENMVSLETDLKYEEMKKNKSL 1826
Cdd:pfam01576  384 SENAELQAELRSLQQAKQDsehkrkkLEGQLQELQSRLSESerqrAELAEKLSKLQsELESVSSLLNEAEGKNIKLSKDV 463
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1827 ERA------VEELQTKNSQQTdvIELANKNRS-------------EFEEATLKYEAQISDLEkyisQQELEMKKSIRDNS 1887
Cdd:pfam01576  464 SSLesqlqdTQELLQEETRQK--LNLSSRLRQledeknslqeqleEEEEAKRNVERQLQTLQ----AQLSDLKKKLEEDA 537
                          570       580
                   ....*....|....*....|....*.
gi 730092     1888 SYRDKVQE----MAQEIEFWKSRYES 1909
Cdd:pfam01576  538 GAVEALEEgrkrLQRELEALTQRLEE 563
CwlO1 COG3883
Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown];
964-1168 1.45e-06

Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 226400 [Multi-domain]  Cd Length: 265  Bit Score: 51.64  E-value: 1.45e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    964 LQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKL----- 1038
Cdd:COG3883   29 LSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLkkrar 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1039 ---SSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAAlnnqLKNKESELLKMKEKIDNHKKELATF 1115
Cdd:COG3883  109 amqVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKS----LEEKQAALEDKLETLVALQNELETQ 184
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 730092   1116 SKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKK 1168
Cdd:COG3883  185 LNSLNSQKAEKNALIAALAAKEASALGEKAALEEQKALAEAAAAEAAKQEAAA 237
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1401-1907 1.49e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 53.53  E-value: 1.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1401 IIKNRDSISKYEEEI-RYYKLENY--KLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQ------KDLESTERQK 1471
Cdd:PRK03918  140 ILESDESREKVVRQIlGLDDYENAykNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEevlreiNEISSELPEL 219
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1472 ELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIweREMERNDSDMQLQET 1551
Cdd:PRK03918  220 REELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV--KELKELKEKAEEYIK 297
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1552 LLELKR-VQDVKKILSDDLAHLKERLSAVEDRsqyTDEINRLKEELNCSLKAETNLKKEFATLKYKLETSTndseaKISD 1630
Cdd:PRK03918  298 LSEFYEeYLDELREIEKRLSRLEEEINGIEER---IKELEEKEERLEELKKKLKELEKRLEELEERHELYE-----EAKA 369
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1631 LLKQLDHYTK-----VVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELES------------DLNQ 1693
Cdd:PRK03918  370 KKEELERLKKrltglTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgrelTEEH 449
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1694 KTDALQISNAALSSSTQKNKEITEKIKYLE------ETLQLQMEQNSRNGELVKTLQASCNGYKdKFDDEKQKniDLYEE 1767
Cdd:PRK03918  450 RKELLEEYTAELKRIEKELKEIEEKERKLRkelrelEKVLKKESELIKLKELAEQLKELEEKLK-KYNLEELE--KKAEE 526
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1768 NQTLQKLNTDLQLQLKNLHERLSdtteknawlsKIHELENMVSLETDLKYEEMKKNKSLERAVEELQTKNsqqtdvIELA 1847
Cdd:PRK03918  527 YEKLKEKLIKLKGEIKSLKKELE----------KLEELKKKLAELEKKLDELEEELAELLKELEELGFES------VEEL 590
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 730092    1848 NKNRSEFEEATLKY------EAQISDLEKYISQQELEMKKSIRDNSSYRDKVQEMAQEIEFWKSRY 1907
Cdd:PRK03918  591 EERLKELEPFYNEYlelkdaEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY 656
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
1327-1876 1.53e-06

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 53.30  E-value: 1.53e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1327 LKRQLDIETRAhyDAENAISALHSKFRKIQGESSlSSSDIYKLKFEASEERVKSLEDKLKTmpLRDRTNlpvGDIIKNRD 1406
Cdd:pfam12128  244 TKLQQEFNTLE--SAELRLSHLHFGYKSDETLIA-SRQEERQETSAELNQLLRTLDDQWKE--KRDELN---GELSAADA 315
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1407 SISKYEEEIryyklenyklqEILNESNGKLSQLTLDlrqsksKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQF- 1485
Cdd:pfam12128  316 AVAKDRSEL-----------EALEDQHGAFLDADIE------TAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYn 378
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1486 -------ENCMDDLQGNELRL---REHIHALKQAEEDVknmasiIEKLKTQ-NKQKEKLIwereMERNDSDMQLQETLLE 1554
Cdd:pfam12128  379 rrrskikEQNNRDIAGIKDKLakiREARDRQLAVAEDD------LQALESElREQLEAGK----LEFNEEEYRLKSRLGE 448
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1555 LKRVQDVKKILSDDLahlkerlsavEDRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLEtstndseakisdllKQ 1634
Cdd:pfam12128  449 LKLRLNQATATPELL----------LQLENFDERIERAREEQEAANAEVERLQSELRQARKRRD--------------QA 504
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1635 LDHYTKVVEMLNNEKDAISLAEKELYQK----YEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAA------ 1704
Cdd:pfam12128  505 SEALRQASRRLEERQSALDELELQLFPQagtlLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELnlygvk 584
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1705 -------LSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQ--KNID-----LYEENQT 1770
Cdd:pfam12128  585 ldlkridVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTalKNARldlrrLFDEKQS 664
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1771 LQ-KLNTDLQLQLKNLHERLSDTT--------EKNAWLSKIHE--LEN-MVSLETDLKYEEMKKNK--SLERAVEELQTK 1836
Cdd:pfam12128  665 EKdKKNKALAERKDSANERLNSLEaqlkqldkKHQAWLEEQKEqkREArTEKQAYWQVVEGALDAQlaLLKAAIAARRSG 744
                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....
gi 730092     1837 NSQQTDVIELANKN----RSEFEEATLKYEAQISDLEKYISQQE 1876
Cdd:pfam12128  745 AKAELKALETWYKRdlasLGVDPDVIAKLKREIRTLERKIERIA 788
PRK12704 PRK12704
phosphodiesterase; Provisional
879-1039 1.57e-06

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 52.86  E-value: 1.57e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     879 EMESKKKFLE--EKNQKTVNELENTqdlLNQEKENLRKNEsllNRVKTSSETLQKQFDDLvsekdeisrEKLEvaQNLEE 956
Cdd:PRK12704   52 EAIKKEALLEakEEIHKLRNEFEKE---LRERRNELQKLE---KRLLQKEENLDRKLELL---------EKRE--EELEK 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     957 AHQKIQGLQETIREREATLEKLHSKNNELIKQISDLncdiSKEQSSQSLIKESKLKLENEIKRLkdvINSKEEEIKSFND 1036
Cdd:PRK12704  115 KEKELEQKQQELEKKEEELEELIEEQLQELERISGL----TAEEAKEILLEKVEEEARHEAAVL---IKEIEEEAKEEAD 187

                  ...
gi 730092    1037 KLS 1039
Cdd:PRK12704  188 KKA 190
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
1370-1881 1.81e-06

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 53.10  E-value: 1.81e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1370 KFEASEERVKSLEDKLKTMPLRDRTNLPvgDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSK 1449
Cdd:TIGR04523   34 EEKQLEKKLKTIKNELKNKEKELKNLDK--NLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSE 111
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1450 EALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQgnelRLREHIHALKQAEEDVKNMASIIEKLKTQNKQ 1529
Cdd:TIGR04523  112 IKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELE----KLNNKYNDLKKQKEELENELNLLEKEKLNIQK 187
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1530 KEKLIweremerNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDR-SQYTDEINRLKEELNCSLKAETNLKK 1608
Cdd:TIGR04523  188 NIDKI-------KNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNiEKKQQEINEKTTEISNTQTQLNQLKD 260
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1609 EFATLKYKLETSTNDSE---AKISDLLKQLDHYTKVVEMLNNEKDAISLAEkelyqkyeaLNTECESLKGKIVSLTKIKQ 1685
Cdd:TIGR04523  261 EQNKIKKQLSEKQKELEqnnKKIKELEKQLNQLKSEISDLNNQKEQDWNKE---------LKSELKNQEKKLEEIQNQIS 331
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1686 ELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLY 1765
Cdd:TIGR04523  332 QNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKD 411
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1766 EENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWL-SKIHELENMVSLETDLKYEEMKKNKSLERAVEELQTKNSQQTDVI 1844
Cdd:TIGR04523  412 EQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLtNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKEL 491
                          490       500       510
                   ....*....|....*....|....*....|....*..
gi 730092     1845 ELANKNRSEFEEATLKYEAQISDLEKYISQQELEMKK 1881
Cdd:TIGR04523  492 KSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK 528
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
902-1169 3.77e-06

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 224259 [Multi-domain]  Cd Length: 294  Bit Score: 50.84  E-value: 3.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    902 QDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSK 981
Cdd:COG1340    5 LDKLDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAK 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    982 NNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKsFNDKLSSSEEDLDIKLVTLEKNcniamS 1061
Cdd:COG1340   85 LQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERE-LVQKIKELRKELEDAKKALEEN-----E 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1062 RLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLT 1141
Cdd:COG1340  159 KLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELR 238
                        250       260
                 ....*....|....*....|....*...
gi 730092   1142 EYKSNYQKIKEEYSNFQRETKEQEQKKR 1169
Cdd:COG1340  239 ELEKKIKALRAKEKAAKRREKREELKER 266
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
1408-1878 4.03e-06

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 52.08  E-value: 4.03e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1408 ISKYEEEIRYYKLENYKLQE---ILNESNGKL-SQLTLDLRQSKS-------KEALLSEQLDRLQK------DLESTERQ 1470
Cdd:pfam01576  133 IKKMEEDILLLEDQNNKLQKerkLLEERISEFtSNLAEEEEKSKSlnklknkHEAMISDLEDRLKKeekgrqELEKAKRK 212
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1471 KELLSSTIKQQkqqfencMDDLQgneLRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIweREMERNDSDmqLQE 1550
Cdd:pfam01576  213 LEGESSDLQEQ-------IAELQ---AQIAELRAQLAKKEEELQAALARLEEETAQKNAALKKL--RELEAQLSE--LQE 278
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1551 TLlELKRVQdvkkilsddlahlkeRLSAVEDRSQYTDEINRLKEELNCSLKAeTNLKKEFATLKykletstndsEAKISD 1630
Cdd:pfam01576  279 DL-ESERAA---------------RAKAEKQRRDLGEELEALKTELEDTLDT-TAAQQELRSKR----------EQEVTE 331
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1631 LLKQLDHYTKVVEMlnnekdAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQ 1710
Cdd:pfam01576  332 LKKALEEETRSHEA------QLQEMRQKHTQALEELTEQLEQAKRNKASLEKAKQALESENAELQAELRSLQQAKQDSEH 405
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1711 KNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKnlherlS 1790
Cdd:pfam01576  406 KRKKLEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQ------E 479
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1791 DTTEKNAWLSKIHELEN-MVSLETDLKyEEMKKNKSLERAVEELQT-------KNSQQTDVIELANKNR----SEFEEAT 1858
Cdd:pfam01576  480 ETRQKLNLSSRLRQLEDeKNSLQEQLE-EEEEAKRNVERQLQTLQAqlsdlkkKLEEDAGAVEALEEGRkrlqRELEALT 558
                          490       500
                   ....*....|....*....|....*
gi 730092     1859 LKYE---AQISDLEKYIS--QQELE 1878
Cdd:pfam01576  559 QRLEekaAAYDKLEKTKNrlQQELD 583
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
861-1190 5.92e-06

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 51.27  E-value: 5.92e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      861 TRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKtVNELENTQDLLNQEkenlrkneslLNRVKTSSETLQKQFDDLVSEK 940
Cdd:pfam05557   66 EAEEALREQAELNRLKKKNLEALNKKLNEKESQ-LADAREVISCLKNE----------LSELRRQIQRQELELSSTNSEL 134
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      941 DEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISD--LNCDISKEQSSQSLIKESKLKLENEIK 1018
Cdd:pfam05557  135 EELQERLDLQKAKAQEAEQLRQNLEAQQSSLAEAEQRIKELEFEIQSQEQDseIVKNSKSELARIPELERELERLREHNK 214
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1019 RLKDVINSK---EEEIKSFNDKLSSSEE------DLDIKLVTLEKNCN----IAMSRLQSLVTEnSDLRSK-------NE 1078
Cdd:pfam05557  215 HLNENIENKlllKEEVEDLKRKLEREEGyreelaTLELEKEKLEQELKswekLAQDTGLNLRSP-EDLSRRieqlqqrEI 293
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1079 NFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDdavsEHGKITAELKETRIQLTEYKSNYQKIKEEYSN-- 1156
Cdd:pfam05557  294 TLKEENSSLTSSARQLEKAQRELEQELAQYLKNIEDLNKKLK----RHKALVRRLQRRVLLLTKERDGMRAILESYDKel 369
                          330       340       350
                   ....*....|....*....|....*....|....*.
gi 730092     1157 FQRETKEQEQKKRNSLVESLNDSKIK--ELEARLSQ 1190
Cdd:pfam05557  370 TPSNYSPQLLERIEEAEDMTQDMQAHneEMEAQLSV 405
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
1403-1928 6.04e-06

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 51.26  E-value: 6.04e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1403 KNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKEL-------LS 1475
Cdd:pfam05483  110 ENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREEtrqvymdLN 189
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1476 STIKQQKQQFENCMddLQGNELRLREHIhalkQAEEDVKNMASIIEKLKTQNKQKEKL-------IWEREMERNDSDMQL 1548
Cdd:pfam05483  190 NNIEKMILAFEELR--VQAENARLEMHF----KLKEDHEKIQHLEEEYKKEINDKEKQvsllliqITEKENKMKDLTFLL 263
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1549 QETLLELKRVQDVKKILSDDLAHLKERlsavedRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKI 1628
Cdd:pfam05483  264 EESRDKANQLEEKTKLQDENLKELIEK------KDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQM 337
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1629 SDLLKQLDHYTKVV-----------EMLNNEKDAISLAEKELyqkyEALNTECESLKGKIVSLTKIKQELESDLNQKTDA 1697
Cdd:pfam05483  338 EELNKAKAAHSFVVtefeattcsleELLRTEQQRLEKNEDQL----KIITMELQKKSSELEEMTKFKNNKEVELEELKKI 413
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1698 LQISNAALSSSTQKNKeITEKIKYLEETLQLQM---EQNSRNGELVKTLQASCNGY--------KDKFDDEKQKNIDLYE 1766
Cdd:pfam05483  414 LAEDEKLLDEKKQFEK-IAEELKGKEQELIFLLqarEKEIHDLEIQLTAIKTSEEHylkevedlKTELEKEKLKNIELTA 492
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1767 -------ENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKihELENMVSLETDLKYEemkknksLERAVEELQTKNSQ 1839
Cdd:pfam05483  493 hcdklllENKELTQEASDMTLELKKHQEDIINCKKQEERMLK--QIENLEEKEMNLRDE-------LESVREEFIQKGDE 563
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1840 QTDVIELANKNRSEFEEATLKYEAQISDLEKYISQqeleMKKSIRDNSSYRDKVQEMAQEIEfWKSRYESTMIGSKNIDS 1919
Cdd:pfam05483  564 VKCKLDKSEENARSIEYEVLKKEKQMKILENKCNN----LKKQIENKNKNIEELHQENKALK-KKGSAENKQLNAYEIKV 638

                   ....*....
gi 730092     1920 NNAQSKIFS 1928
Cdd:pfam05483  639 NKLELELAS 647
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
886-1134 6.84e-06

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 50.79  E-value: 6.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    886 FLEEKN-QKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGL 964
Cdd:COG4372   63 FLLNRNlRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARL 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    965 QETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKD---VINSKEEEIKSFNDKLSSS 1041
Cdd:COG4372  143 TKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQeaqNLATRANAAQARTEELARR 222
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1042 EedldiklvtlekncniamSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDD 1121
Cdd:COG4372  223 A------------------AAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQA 284
                        250
                 ....*....|...
gi 730092   1122 AVSEHGKITAELK 1134
Cdd:COG4372  285 YVRLRQQAAATQR 297
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
877-1188 7.48e-06

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 50.66  E-value: 7.48e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      877 LQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQF-------DDLVSEKDEISREKLE 949
Cdd:pfam07888   47 LQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKVEELEEKYkelsrsgEELAEEKDALLAQRAE 126
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      950 VAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISD---------------------LNCDISKEQSSQSLIKE 1008
Cdd:pfam07888  127 SEARIRELEEDIKTLTQRVLERETELERMKERVKKAGAQRKEeeaerkqlqaklqqteeelrsLSKEFQELRNSLAQRDT 206
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1009 SKLKLENEIKRLKDVINS---KEEEIKSFNDKLSSSEEdldiKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKA 1085
Cdd:pfam07888  207 QVLQLQDTITTLTQKLTTahrKEAENEALLEELRSLQE----RLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAA 282
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1086 ALNNQLKN-------------KESELL-----KMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKE----TRIQLTEY 1143
Cdd:pfam07888  283 QLTLQLADaslalregrarwaQERETLqqsaeADKDRIEKLSAELQRLEERLQEERMEREKLEVELGRekdcNRVQLSES 362
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*
gi 730092     1144 KSNYQKIKEEYSNFQREtKEQEQKKRNSLVESlndskIKELEARL 1188
Cdd:pfam07888  363 RRELQELKASLRVAQKE-KEQLQAEKQELLEY-----IRQLEQRL 401
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
916-1484 7.91e-06

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 51.26  E-value: 7.91e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      916 ESLLNRVKTSSETLQKQFDDLVSEKdeISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCD 995
Cdd:pfam15921  248 EALKSESQNKIELLLQQHQDRIEQL--ISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLEST 325
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      996 ISKEQSSqslIKESKLKLENEIKRLKD---VINSKEEEIKSFNDKLSSSEEDLDIKLVTL-------EKNCNIAMSRLQS 1065
Cdd:pfam15921  326 VSQLRSE---LREAKRMYEDKIEELEKqlvLANSELTEARTERDQFSQESGNLDDQLQKLladlhkrEKELSLEKEQNKR 402
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1066 LVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLteyks 1145
Cdd:pfam15921  403 LWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEML----- 477
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1146 nyQKIKEEYSNfQRETKEQEQKKRNSLVESLND---------SKIKELEARLSQEISLNQYL-NKRISGNSVETNISSTR 1215
Cdd:pfam15921  478 --RKVVEELTA-KKMTLESSERTVSDLTASLQEkeraieatnAEITKLRSRVDLKLQELQHLkNEGDHLRNVQTECEALK 554
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1216 RSTSYSDDPLD--------KEDIIKKYYDLQLAFTEITRNLENEIEEKknlisRLRFTETRLasssFEDQKiKAQMKKLK 1287
Cdd:pfam15921  555 LQMAEKDKVIEilrqqienMTQLVGQHGRTAGAMQVEKAQLEKEINDR-----RLELQEFKI----LKDKK-DAKIRELE 624
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1288 KLIQDMD-PSIPLDSILNEPLDNCPDKESDINKLMLEVDYLKRQLDIETRAHydaenaiSALHSKFRKIQGESSLSSSDI 1366
Cdd:pfam15921  625 ARVSDLElEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDY-------EVLKRNFRNKSEEMETTTNKL 697
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1367 yKLKFEASEERVKSLEDKLKTMPLRDRTNLPVG-----DIIKNRDSISKYEEEIRYYK---LENYKLQEILNESNGKLSQ 1438
Cdd:pfam15921  698 -KMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAmgmqkQITAKRGQIDALQSKIQFLEeamTNANKEKHFLKEEKNKLSQ 776
                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 730092     1439 -----------LTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQ 1484
Cdd:pfam15921  777 elstvateknkMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQE 833
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
870-1918 8.04e-06

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 51.21  E-value: 8.04e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      870 INKLKNDLQE----MESKKKFLE---------EKNQKTVNELENTQDLlnQEKENLRKNESLLNRVKTS-SETLQKQFDD 935
Cdd:TIGR01612  598 INKLKLELKEkiknISDKNEYIKkaidlkkiiENNNAYIDELAKISPY--QVPEHLKNKDKIYSTIKSElSKIYEDDIDA 675
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      936 LVSEKDEISREK----LEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIK-QISDLNCDISKEQSSQslikesk 1010
Cdd:TIGR01612  676 LYNELSSIVKENaidnTEDKAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKnELLDIIVEIKKHIHGE------- 748
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1011 lkLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLdiklvtlekncNIAMSRLQSLVTENSDlRSKNENFKKEKAALN-- 1088
Cdd:TIGR01612  749 --INKDLNKILEDFKNKEKELSNKINDYAKEKDEL-----------NKYKSKISEIKNHYND-QINIDNIKDEDAKQNyd 814
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1089 ------NQLKNKESELLKMKEKIDNHKKElatFSKQRDDAVSEHGKITAELKETRIQLTEYKSnyqKIKEEYSNFQRETK 1162
Cdd:TIGR01612  815 kskeyiKTISIKEDEIFKIINEMKFMKDD---FLNKVDKFINFENNCKEKIDSEHEQFAELTN---KIKAEISDDKLNDY 888
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1163 EQEQKKRNSLVESLNDSKIKELEaRLSQEISLNQYLnkRISGNSVETnISSTRRSTSYSDDPLDKE-DIIKKYYDLQLAF 1241
Cdd:TIGR01612  889 EKKFNDSKSLINEINKSIEEEYQ-NINTLKKVDEYI--KICENTKES-IEKFHNKQNILKEILNKNiDTIKESNLIEKSY 964
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1242 TEitrNLENEIEEKKNLISRLrFTETRLASSSFEDQKIKAQMKKLKKliqdmDPSIPLDSILNEPLDncpDKESDINKLM 1321
Cdd:TIGR01612  965 KD---KFDNTLIDKINELDKA-FKDASLNDYEAKNNELIKYFNDLKA-----NLGKNKENMLYHQFD---EKEKATNDIE 1032
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1322 LE-VDYLKRQLDIETRAH---YDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVK------------------ 1379
Cdd:TIGR01612 1033 QKiEDANKNIPNIEIAIHtsiYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIKEKLKhynfddfgkeenikyade 1112
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1380 --SLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQL 1457
Cdd:TIGR01612 1113 inKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKKIENIVTKIDKKKNIYDEI 1192
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1458 DRLQKDLESTERQKELLSStIKQQKQQFENCMddlqgNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWER 1537
Cdd:TIGR01612 1193 KKLLNEIAEIEKDKTSLEE-VKGINLSYGKNL-----GKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEM 1266
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1538 --EMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKER-LSAVEDRSQYTDeINRLKEELNCSLKAETNLKKEFATLK 1614
Cdd:TIGR01612 1267 giEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKsLKIIEDFSEESD-INDIKKELQKNLLDAQKHNSDINLYL 1345
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1615 YKLETSTNDSEA-KISDLLKQLDHYTKVVEMLN-NEKDAISLAEKELYQKYEalNTECESLKGKIVS----------LTK 1682
Cdd:TIGR01612 1346 NEIANIYNILKLnKIKKIIDEVKEYTKEIEENNkNIKDELDKSEKLIKKIKD--DINLEECKSKIEStlddkdidecIKK 1423
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1683 IKQELESDLNQKTDalqiSNAALSSSTQKNKEITEKIKYLE---ETLQLQMEQNSRNG---------ELVKTLQAScNGY 1750
Cdd:TIGR01612 1424 IKELKNHILSEESN----IDTYFKNADENNENVLLLFKNIEmadNKSQHILKIKKDNAtndhdfninELKEHIDKS-KGC 1498
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1751 KDKFDDEK---QKNIDLYEE--NQTLQKLNTDLQLQLKNLHERLSDttEKNAWLSKIHELENMVSLETDLKYEEMKKNKS 1825
Cdd:TIGR01612 1499 KDEADKNAkaiEKNKELFEQykKDVTELLNKYSALAIKNKFAKTKK--DSEIIIKEIKDAHKKFILEAEKSEQKIKEIKK 1576
                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1826 LERAVEELQTKNSQQTDVIELANKNRSEFEEATLKyeaqISDLEKYISQ-----QELEMKKSIRDNSSYRDKVQEMAQEI 1900
Cdd:TIGR01612 1577 EKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLK----ISDIKKKINDclketESIEKKISSFSIDSQDTELKENGDNL 1652
                         1130
                   ....*....|....*...
gi 730092     1901 EFWKSRYESTMIGSKNID 1918
Cdd:TIGR01612 1653 NSLQEFLESLKDQKKNIE 1670
46 PHA02562
endonuclease subunit; Provisional
861-1054 8.96e-06

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 50.40  E-value: 8.96e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     861 TRTKKFNEQINKLKNDL----QEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDL 936
Cdd:PHA02562  174 DKIRELNQQIQTLDMKIdhiqQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP 253
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     937 VSE----KDEISREKLEVA-------------------QNLEEAHQKIQGLQETIREREATLEKLHSKNNEL-------- 985
Cdd:PHA02562  254 SAAlnklNTAAAKIKSKIEqfqkvikmyekggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELeeimdefn 333
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092     986 --IKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLssseEDLDIKLVTLEK 1054
Cdd:PHA02562  334 eqSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDEL----DKIVKTKSELVK 400
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
861-1119 1.13e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 50.11  E-value: 1.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    861 TRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSetlqKQFDDLVSEK 940
Cdd:COG4942   59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAAL----QRSGRNPPPA 134
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    941 DEISREKLEVAQNLEEAHQKI-QGLQETIREREATLeklhsknneliKQISDLNCDISKEQSSQslikeskLKLENEIKR 1019
Cdd:COG4942  135 LLVSPEDAQRSVRLAIYYGALnPARAERIDALKATL-----------KQLAAVRAEIAAEQAEL-------TTLLSEQRA 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1020 LKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELL 1099
Cdd:COG4942  197 QQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETY 276
                        250       260
                 ....*....|....*....|
gi 730092   1100 KMKEKIDNHKKELATFSKQR 1119
Cdd:COG4942  277 KPTAPEKMLISSTGGFGALR 296
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
857-1784 1.15e-05

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 50.82  E-value: 1.15e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      857 SNDMTRTKKFNEQINKLKNDLQEMesKKKFLEEKNqktvneLENTQDllNQEKENLRKNESLLNRVKTSSETLQKQFDDL 936
Cdd:TIGR01612  768 SNKINDYAKEKDELNKYKSKISEI--KNHYNDQIN------IDNIKD--EDAKQNYDKSKEYIKTISIKEDEIFKIINEM 837
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      937 VSEKDEIsREKLEVAQNLEEAHQkiqglqETIREREATLEKLhskNNELIKQISD--LNCDISKEQSSQSLIKESKLKLE 1014
Cdd:TIGR01612  838 KFMKDDF-LNKVDKFINFENNCK------EKIDSEHEQFAEL---TNKIKAEISDdkLNDYEKKFNDSKSLINEINKSIE 907
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1015 NE---IKRLKDV------INSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLvtENSDLRSKNENFKKEKA 1085
Cdd:TIGR01612  908 EEyqnINTLKKVdeyikiCENTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKF--DNTLIDKINELDKAFKD 985
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1086 ALNNQLKNKESELLK----MKEKIDNHKKElaTFSKQRDdavsEHGKITAELKETRIQLTEYKSNYQ-KIKEEYSNFQRE 1160
Cdd:TIGR01612  986 ASLNDYEAKNNELIKyfndLKANLGKNKEN--MLYHQFD----EKEKATNDIEQKIEDANKNIPNIEiAIHTSIYNIIDE 1059
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1161 TKEQEQKKrnslVESLNDSKIKELEARLSQEISLNQYLNK-RISGNSVETNISSTRRSTSYSDDPLDKEDIIKKYYDlql 1239
Cdd:TIGR01612 1060 IEKEIGKN----IELLNKEILEEAEINITNFNEIKEKLKHyNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIK--- 1132
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1240 AFTEITRNLENEIEEKKNLISRLRftetRLASSSFEDQKIKAQMKKLKKLIQDMDPSIPLDSILNEPLDNCPDKESD--- 1316
Cdd:TIGR01612 1133 ALEEIKKKSENYIDEIKAQINDLE----DVADKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDkts 1208
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1317 --------------INKLMLE-VDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLS------------SSDIYKL 1369
Cdd:TIGR01612 1209 leevkginlsygknLGKLFLEkIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEmdikaemetfniSHDDDKD 1288
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1370 KFEASEERVKSLEDklktmpLRDRTnLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSK 1449
Cdd:TIGR01612 1289 HHIISKKHDENISD------IREKS-LKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKLNKIK 1361
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1450 EAL-----LSEQLDRLQKDLESTERQKELLSSTIKQQ------KQQFENCMDDLQGNEL-----RLREHIHA-------- 1505
Cdd:TIGR01612 1362 KIIdevkeYTKEIEENNKNIKDELDKSEKLIKKIKDDinleecKSKIESTLDDKDIDECikkikELKNHILSeesnidty 1441
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1506 LKQAEEDVKNMASIIEKLKTQNKQKEKLIwerEMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDR-SQ 1584
Cdd:TIGR01612 1442 FKNADENNENVLLLFKNIEMADNKSQHIL---KIKKDNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEKNKELfEQ 1518
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1585 YTDEINRL---------KEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQldHYTKVVEMLNNEKDAISLA 1655
Cdd:TIGR01612 1519 YKKDVTELlnkysalaiKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKE--KFRIEDDAAKNDKSNKAAI 1596
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1656 EkelyqkyeaLNTECESLKGKIVSLTKIKQELeSDLNQKTDALQISNAALSSSTQKNKEitekikyleetlqlqmeqnSR 1735
Cdd:TIGR01612 1597 D---------IQLSLENFENKFLKISDIKKKI-NDCLKETESIEKKISSFSIDSQDTEL-------------------KE 1647
                          970       980       990      1000
                   ....*....|....*....|....*....|....*....|....*....
gi 730092     1736 NGELVKTLQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKN 1784
Cdd:TIGR01612 1648 NGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKN 1696
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
1248-1727 1.19e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 50.42  E-value: 1.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1248 LENEIEEK--KNLISRLRFTETRLASSS-----FEDQKIKAQMKKLKkliqdmdpsipLDSILN---EPLDNCPDKESDI 1317
Cdd:PRK02224  192 LKAQIEEKeeKDLHERLNGLESELAELDeeierYEEQREQARETRDE-----------ADEVLEeheERREELETLEAEI 260
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1318 NKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIyklkfEASEERVKSLEDKLKTmpLRDRTNLP 1397
Cdd:PRK02224  261 EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADA-----EAVEARREELEDRDEE--LRDRLEEC 333
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1398 VGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQK-------DLESTERQ 1470
Cdd:PRK02224  334 RVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRErfgdapvDLGNAEDF 413
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1471 KELLSSTIKQQKQQFENCMDDLQGNELRLRE---------------------HIHALKQAEEDVKNMASIIEKLKTQNKQ 1529
Cdd:PRK02224  414 LEELREERDELREREAELEATLRTARERVEEaealleagkcpecgqpvegspHVETIEEDRERVEELEAELEDLEEEVEE 493
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1530 KEkliweremERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLsavEDRSQYTDEINRLKEELNCSL--------K 1601
Cdd:PRK02224  494 VE--------ERLERAEDLVEAEDRIERLEERREDLEELIAERRETI---EEKRERAEELRERAAELEAEAeekreaaaE 562
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1602 AETNLKK---EFATLKYKLETSTN--DSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGK 1676
Cdd:PRK02224  563 AEEEAEEareEVAELNSKLAELKEriESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAE 642
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 730092    1677 -----IVSLTKIKQELES----------DLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQ 1727
Cdd:PRK02224  643 fdearIEEAREDKERAEEyleqveekldELREERDDLQAEIGAVENELEELEELRERREALENRVE 708
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The ...
1073-1881 1.30e-05

RecF/RecN/SMC N terminal domain; This domain is found at the N-terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 50.36  E-value: 1.30e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1073 LRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKE 1152
Cdd:pfam02463  178 LIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSK 257
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1153 EYSNFQRETKEQEQKKRNSLVESLNDSKIKELEARLSQEISLNQYLNKRISGNSVETNISSTRRSTSYSDDPLDKEDIIK 1232
Cdd:pfam02463  258 QEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEI 337
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1233 KYYDLQLAFTEITRNLENEIEEKKNLISRLrftetrlasssfEDQKIKAQMKKLKKLIQDMDPSIPLDSILNEPLDNCPD 1312
Cdd:pfam02463  338 EELEKELKELEIKREAEEEEEEELEKLQEK------------LEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEK 405
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1313 KESDINKLMLEVDYLKRQLdIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYKLKFEASEERVKSLEDKLKTMPLRD 1392
Cdd:pfam02463  406 EAQLLLELARQLEDLLKEE-KKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQE 484
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1393 RTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEA--LLSEQLDRLQKDLESTERQ 1470
Cdd:pfam02463  485 QLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVaiSTAVIVEVSATADEVEERQ 564
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1471 KELLSST-IKQQKQQFENCMDDLQGNELRLREHIHALKQAEedVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQ 1549
Cdd:pfam02463  565 KLVRALTeLPLGARKLRLLIPKLKLPLKSIAVLEIDPILNL--AQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAK 642
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1550 ETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKIS 1629
Cdd:pfam02463  643 AKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEEL 722
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1630 DLLKQLDHYTKVVEMLNNEKDAISLAEKELyqkyealntECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSST 1709
Cdd:pfam02463  723 LADRVQEAQDKINEELKLLKQKIDEEEEEE---------EKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKE 793
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1710 QKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLhERL 1789
Cdd:pfam02463  794 EKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL-QEL 872
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1790 SDTTEKNAWLSKIHELENMVSLETDLKYEEMKKNKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLE 1869
Cdd:pfam02463  873 LLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEE 952
                          810
                   ....*....|..
gi 730092     1870 KYISQQELEMKK 1881
Cdd:pfam02463  953 NNKEEEEERNKR 964
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
1019-1885 1.58e-05

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 50.16  E-value: 1.58e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1019 RLKDVINSKEEEIKSFNDKLSSSE---EDLDIKLVTLEKNCNIAMSRLQS---LVTENSDLRSKNENFKKE--------- 1083
Cdd:pfam01576    2 RQEEEMQAKEEELQKVKEKQQKAEselKELEKKHQQLCEEKNILAEQLQAeteLFAEAEEMRARLAARKQEleeilhele 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1084 ---------KAALNNQLKNKESELLKMKEKIDnhkKELATFSKQRDDAVSEHGKITaELKETRIQLTEYKSNYQKIK--- 1151
Cdd:pfam01576   82 arleeeeerSQQLQNEKKKMQQHIQDLEEQLE---EEEAARQKLQLEKVTTEAKIK-KMEEDILLLEDQNNKLQKERkll 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1152 -EEYSNFQRETKEQEQKKRN-SLVESLNDSKIKELEARLSQEISLNQYLNK---RISGNSVETNISSTRRSTSYSDdplD 1226
Cdd:pfam01576  158 eERISEFTSNLAEEEEKSKSlNKLKNKHEAMISDLEDRLKKEEKGRQELEKakrKLEGESSDLQEQIAELQAQIAE---L 234
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1227 KEDIIKKYYDLQLAFTEitrnLENEIEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDPSI-PLDSILNE 1305
Cdd:pfam01576  235 RAQLAKKEEELQAALAR----LEEETAQKNAALKKLRELEAQLSELQEDLESERAARAKAEKQRRDLGEELeALKTELED 310
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1306 PLDNCPDKESDINKLMLEVDYLKRQLDIETRAHydaENAISALHSKfrKIQGESSLSSSDIYKLKFEASEERVK-SLEDK 1384
Cdd:pfam01576  311 TLDTTAAQQELRSKREQEVTELKKALEEETRSH---EAQLQEMRQK--HTQALEELTEQLEQAKRNKASLEKAKqALESE 385
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1385 LKTMPLRDRTNlpvgdiiknrdSISKYEEEIRYYKLEnyklqeilnesnGKLSQLTLDLRQSKSKEALLSEQLDRLQKDL 1464
Cdd:pfam01576  386 NAELQAELRSL-----------QQAKQDSEHKRKKLE------------GQLQELQSRLSESERQRAELAEKLSKLQSEL 442
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1465 ES-TERQKELLSSTIKQQKQ------QFENCMDDLQGNELRLREHIHALKQAEEDVKNMasiieklktQNKQKEKLIWER 1537
Cdd:pfam01576  443 ESvSSLLNEAEGKNIKLSKDvsslesQLQDTQELLQEETRQKLNLSSRLRQLEDEKNSL---------QEQLEEEEEAKR 513
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1538 EMERNDSDMQLQetllelkrVQDVKKILSDDLAHLKerlSAVEDRSQYTDEINRLKEELncslkaetnlkKEFATLKYKL 1617
Cdd:pfam01576  514 NVERQLQTLQAQ--------LSDLKKKLEEDAGAVE---ALEEGRKRLQRELEALTQRL-----------EEKAAAYDKL 571
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1618 ETSTNDSEAKISDLLKQLDHYTKVV-----------EMLNNEKdAISLAEKELYQKYEALNTECEslkgkivsltkikqe 1686
Cdd:pfam01576  572 EKTKNRLQQELDDLLVDLDHQRQLVsnlekkqkkfdQMLAEEK-AISARYAEERDRAEAEAREKE--------------- 635
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1687 lesdlnqkTDALqisnaALSSSTQKNKEITEKIKYLEETLQLQMEQ--NSRN--GELVKTLQASCNGYKDKFDDEKQKNI 1762
Cdd:pfam01576  636 --------TKAL-----SLARALEEALDAKEELERQNKQLRAEMEDlvSSKDdvGKNVHELERSKRALEQQVEEMKTQLE 702
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1763 DLYEENQTLQ--KLNTDLQLQ-LKNLHER-LSDTTEKN-----AWLSKIHELENMVSLETDLKYEEMKKNKSLERAVEEL 1833
Cdd:pfam01576  703 ELEDELQATEdaKLRLEVNMQaLKAQFERdLQARDEQGeekrrQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKEL 782
                          890       900       910       920       930
                   ....*....|....*....|....*....|....*....|....*....|..
gi 730092     1834 QTKnsqqtdvIELANKNRSEFEEATLKYEAQISDLekyisQQELEMKKSIRD 1885
Cdd:pfam01576  783 EAQ-------IEAANKGRDEAVKQLKKLQAQMKDL-----QRELDEARASRD 822
PRK01156 PRK01156
chromosome segregation protein; Provisional
839-1062 1.79e-05

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 49.90  E-value: 1.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     839 KEDPWFNLFIRIKpLLTSSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESL 918
Cdd:PRK01156  566 KRTSWLNALAVIS-LIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKIL 644
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     919 LNRVKTSSETLQKQF---DDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCD 995
Cdd:PRK01156  645 IEKLRGKIDNYKKQIaeiDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINET 724
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 730092     996 IskeqssqslikESKLKLENEIKRLKDVINSKEEE------IKSFNDKLSS------SEEDLDIKLVTLEKNCNIAMSR 1062
Cdd:PRK01156  725 L-----------ESMKKIKKAIGDLKRLREAFDKSgvpamiRKSASQAMTSltrkylFEFNLDFDDIDVDQDFNITVSR 792
46 PHA02562
endonuclease subunit; Provisional
929-1132 2.03e-05

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 49.24  E-value: 2.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     929 LQKQFDDLVSEKDEIsREKLEVAQNLEEAHQK-----IQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQ 1003
Cdd:PHA02562  179 LNQQIQTLDMKIDHI-QQQIKTYNKNIEEQRKkngenIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAAL 257
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1004 SLIKESKLKLENEIKRLKDVI-------------------NSKEEEIKSFNDKLSSSEEDLDIKLVTLEKncniAMSRLQ 1064
Cdd:PHA02562  258 NKLNTAAAKIKSKIEQFQKVIkmyekggvcptctqqisegPDRITKIKDKLKELQHSLEKLDTAIDELEE----IMDEFN 333
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 730092    1065 SLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAE 1132
Cdd:PHA02562  334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
868-1190 2.85e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 49.27  E-value: 2.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     868 EQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKEnlrKNESLlnrvktssETLQKQFDDLVSEKDEISREK 947
Cdd:PRK02224  206 ERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEE---RREEL--------ETLEAEIEDLRETIAETERER 274
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     948 LEvaqnleeahqkiqgLQETIREREATLEKLHSKNNELIKqisdlncDISKEQSSQSLIKESKLKLENEIKRLKDVINSK 1027
Cdd:PRK02224  275 EE--------------LAEEVRDLRERLEELEEERDDLLA-------EAGLDDADAEAVEARREELEDRDEELRDRLEEC 333
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1028 EEEIKSFNDKLSSSEEDLDiklvTLEkncniamsrlqslvTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDN 1107
Cdd:PRK02224  334 RVAAQAHNEEAESLREDAD----DLE--------------ERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE 395
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1108 HKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIK---EEYSNFQRETK--EQEQKKRNS-LVESLNDS-- 1179
Cdd:PRK02224  396 LRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARervEEAEALLEAGKcpECGQPVEGSpHVETIEEDre 475
                         330
                  ....*....|.
gi 730092    1180 KIKELEARLSQ 1190
Cdd:PRK02224  476 RVEELEAELED 486
HEC1 COG5185
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ...
858-1184 2.89e-05

Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227512 [Multi-domain]  Cd Length: 622  Bit Score: 48.82  E-value: 2.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    858 NDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLV 937
Cdd:COG5185  271 TDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQ 350
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    938 SEKDEI-----------------SREKLEVAQNLEEAHQKIQGLQETIRERE-------ATLEKLHSKNNELIKQISDLN 993
Cdd:COG5185  351 SNIDELhkqlrkqgisteqfelmNQEREKLTRELDKINIQSDKLTKSVKSRKleaqgifKSLEKTLRQYDSLIQNITRSR 430
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    994 CDISKEQSSQSLikESKLKLENEIKR-LKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSD 1072
Cdd:COG5185  431 SQIGHNVNDSSL--KINIEQLFPKGSgINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLEL 508
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1073 -LRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSehgKITAELKETRIQLTEYKSNYQK-- 1149
Cdd:COG5185  509 eLSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQ---STEIKLDELKVDLNRKRYKIHKqv 585
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 730092   1150 --IKEEYSNFQRETKEQEQKKRNSLVESLNDSKIKEL 1184
Cdd:COG5185  586 ihVIDITSKFKINIQSSLEDLENELGKVIEELRNLEF 622
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
868-1190 3.43e-05

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 48.88  E-value: 3.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     868 EQINKLKNDLQEMESKKKFLEEKnqktVNELENTQDLLNQEKENLRkNESLLNRVktSSETLQKQFDDLVSEKDEISREK 947
Cdd:PRK02224  258 AEIEDLRETIAETEREREELAEE----VRDLRERLEELEEERDDLL-AEAGLDDA--DAEAVEARREELEDRDEELRDRL 330
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     948 LEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSlikesklKLENEIKRLKDVINSK 1027
Cdd:PRK02224  331 EECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIE-------ELEEEIEELRERFGDA 403
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1028 E---EEIKSFNDKLSSSEEDLDIKLVTLEKNcniaMSRLQSLVTENSDLRSKN------------------ENFKKEKAA 1086
Cdd:PRK02224  404 PvdlGNAEDFLEELREERDELREREAELEAT----LRTARERVEEAEALLEAGkcpecgqpvegsphvetiEEDRERVEE 479
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1087 LNNQLKNKESELLKMKEKIDNHK------KELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEysnfQRE 1160
Cdd:PRK02224  480 LEAELEDLEEEVEEVEERLERAEdlveaeDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAE----AEE 555
                         330       340       350
                  ....*....|....*....|....*....|
gi 730092    1161 TKEQEQKKRNSLVESLndSKIKELEARLSQ 1190
Cdd:PRK02224  556 KREAAAEAEEEAEEAR--EEVAELNSKLAE 583
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
869-1276 3.62e-05

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 48.89  E-value: 3.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     869 QINKLKNDLQEMESKKKFLEEKnqktvneLENTQDLLNQEKENLrknesllnrVKTSSETLQKQFDDLVSEKDEISREKL 948
Cdd:PTZ00108 1000 LLGKLERELARLSNKVRFIKHV-------INGELVITNAKKKDL---------VKELKKLGYVRFKDIIKKKSEKITAEE 1063
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     949 EVAQNLEEAhqkiqglqETIREREATLEKLHSKNNELIKQISdlncdiskeqssqSLIKESKLKLENEikrlkdvINSKE 1028
Cdd:PTZ00108 1064 EEGAEEDDE--------ADDEDDEEELGAAVSYDYLLSMPIW-------------SLTKEKVEKLNAE-------LEKKE 1115
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1029 EEIksfnDKLSSSE------EDLDIKLVTLEKncniamSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMK 1102
Cdd:PTZ00108 1116 KEL----EKLKNTTpkdmwlEDLDKFEEALEE------QEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSS 1185
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1103 EKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLNDSKIK 1182
Cdd:PTZ00108 1186 ADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDL 1265
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1183 ELEARLSQEI---SLNQYLNKRISGNS-VETNISSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRNLENEIEEKKNL 1258
Cdd:PTZ00108 1266 SKEGKPKNAPkrvSAVQYSPPPPSKRPdGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQAS 1345
                         410
                  ....*....|....*...
gi 730092    1259 ISRLRFTETRLASSSFED 1276
Cdd:PTZ00108 1346 ASQSSRLLRRPRKKKSDS 1363
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
841-1620 4.62e-05

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 48.50  E-value: 4.62e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      841 DPWFNLFIRIKPLLTS----SNDMTRTKKFNEQINKLKNDLQEMESKKKF--------LEEKNQKTVNELENTQDLLNQE 908
Cdd:TIGR00606  248 DPLKNRLKEIEHNLSKimklDNEIKALKSRKKQMEKDNSELELKMEKVFQgtdeqlndLYHNHQRTVREKERELVDCQRE 327
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      909 KENLRKNESLLNRVKTSSET----LQKQFDDLVSEKDEISREKLEVAQNLE--------EAHQKIQGLQETIREREATLE 976
Cdd:TIGR00606  328 LEKLNKERRLLNQEKTELLVeqgrLQLQADRHQEHIRARDSLIQSLATRLEldgfergpFSERQIKNFHTLVIERQEDEA 407
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      977 KLHSKNnelikqISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDiKLVTLEKNC 1056
Cdd:TIGR00606  408 KTAAQL------CADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD-RILELDQEL 480
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1057 NIAMSRLqSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKiDNHK---KELATFSKQRDDAVSEHGKITAEL 1133
Cdd:TIGR00606  481 RKAEREL-SKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQL-NHHTttrTQMEMLTKDKMDKDEQIRKIKSRH 558
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1134 KETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKKRN-----SLVESLNDSKIKELEARLSQEISLNQYLNKRISGNSVE 1208
Cdd:TIGR00606  559 SDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKlnkelASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEE 638
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1209 TNISSTrrstsysddpldKEDIIKKYYDLQLafteitrnLENEIEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKK 1288
Cdd:TIGR00606  639 SDLERL------------KEEIEKSSKQRAM--------LAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFIS 698
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1289 LIQDMDPSIPldsilneplDNCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIYK 1368
Cdd:TIGR00606  699 DLQSKLRLAP---------DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE 769
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1369 LK--FEASEERVKSLEDKLKTMPLRDRTNLPVGDI---IKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDL 1443
Cdd:TIGR00606  770 QEtlLGTIMPEEESAKVCLTDVTIMERFQMELKDVerkIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNR 849
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1444 RQSKSKEallsEQLDRLQKDLESTERQKELLSSTIkQQKQQFENCMDDLQGnelRLREHIHALKQAEEDVKNMASIIEKL 1523
Cdd:TIGR00606  850 KLIQDQQ----EQIQHLKSKTNELKSEKLQIGTNL-QRRQQFEEQLVELST---EVQSLIREIKDAKEQDSPLETFLEKD 921
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1524 KTQNkqkEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLsavedRSQYTDEINRLKEELNCSLKAE 1603
Cdd:TIGR00606  922 QQEK---EELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDY-----LKQKETELNTVNAQLEECEKHQ 993
                          810
                   ....*....|....*..
gi 730092     1604 TNLKKEFATLKYKLETS 1620
Cdd:TIGR00606  994 EKINEDMRLMRQDIDTQ 1010
COG4372 COG4372
Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];
1499-1752 5.44e-05

Uncharacterized conserved protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 226809 [Multi-domain]  Cd Length: 499  Bit Score: 48.10  E-value: 5.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1499 LREHIHALKQAEEDvknmasiIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRVQDVKKILSddlahlKERLSA 1578
Cdd:COG4372   69 LRSGVFQLDDIRPQ-------LRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAAR------QNLAKA 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1579 VEDRSQYTDEINRLKEELNcslkaetNLKKEFATLKYKLETSTNDSEAkISDLLKQLDhyTKVVEmLNNEKDAISLAEKE 1658
Cdd:COG4372  136 QQELARLTKQAQDLQTRLK-------TLAEQRRQLEAQAQSLQASQKQ-LQASATQLK--SQVLD-LKLRSAQIEQEAQN 204
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1659 LYQKYEALntecESLKGKIVSLTKIKQELESDLNQKtdALQISNAALSSStQKNKEITEKikylEETLQLQMEQNSRNGE 1738
Cdd:COG4372  205 LATRANAA----QARTEELARRAAAAQQTAQAIQQR--DAQISQKAQQIA-ARAEQIRER----ERQLQRLETAQARLEQ 273
                        250
                 ....*....|....
gi 730092   1739 LVKTLQASCNGYKD 1752
Cdd:COG4372  274 EVAQLEAYYQAYVR 287
PLN02939 PLN02939
transferase, transferring glycosyl groups
868-1205 6.47e-05

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 47.97  E-value: 6.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     868 EQINKLKNDLQEMeskkkfLEEKNQKTVNELENTQDLLnqekENLRKNESLLNRVKTSSetlQKQFDDLVSEKDEISREK 947
Cdd:PLN02939  106 EAIAAIDNEQQTN------SKDGEQLSDFQLEDLVGMI----QNAEKNILLLNQARLQA---LEDLEKILTEKEALQGKI 172
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     948 LEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLK-DVINS 1026
Cdd:PLN02939  173 NILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKaELIEV 252
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1027 KEEE----------------IKSFNDKLSSSEEDLdIKLVTLEKNCniAMSRLQSLvtenSDLRSKNENfKKEKAAL--- 1087
Cdd:PLN02939  253 AETEervfklekerslldasLRELESKFIVAQEDV-SKLSPLQYDC--WWEKVENL----QDLLDRATN-QVEKAALvld 324
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1088 -NNQLKNKESELLKMKEKIDNHK--KELATFSKQRDDAVSEHGKITAELKETRIQLteyksnYQKIKEEYSNFQRETKEQ 1164
Cdd:PLN02939  325 qNQDLRDKVDKLEASLKEANVSKfsSYKVELLQQKLKLLEERLQASDHEIHSYIQL------YQESIKEFQDTLSKLKEE 398
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 730092    1165 EQKKrnSLVESLNDSKiKELEARLSQEISlNQYLNKRISGN 1205
Cdd:PLN02939  399 SKKR--SLEHPADDMP-SEFWSRILLLID-GWLLEKKISNN 435
UPF0242 pfam06785
Uncharacterized protein family (UPF0242);
868-996 6.72e-05

Uncharacterized protein family (UPF0242);


Pssm-ID: 429117 [Multi-domain]  Cd Length: 194  Bit Score: 45.97  E-value: 6.72e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      868 EQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKN----ESLLNRVKTSSETLQKQFDDLVsekDEI 943
Cdd:pfam06785   58 EDALKEKFEKSFLEEKEAKLTELDAEGFKILEETLEELQSEEERLEEElsqkEEELRRLTEENQQLQIQLQQIS---QDF 134
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 730092      944 SREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDI 996
Cdd:pfam06785  135 AEFRLESEEQLAEKQLLINEYQQTIEEQRSVLEKRQDQIENLESKVRDLNYEI 187
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
1411-1901 7.04e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 48.17  E-value: 7.04e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1411 YEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSkskeallseqLDRLQKDLESTERQKELLSSTIKQQKQQFENCMD 1490
Cdd:pfam15921   76 IERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQS----------VIDLQTKLQEMQMERDAMADIRRRESQSQEDLRN 145
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1491 DLQGNelrlrehIHALKQAEEDVKNMasiiekLKTQNKQKEKLiwEREMERNDSDMQLQETLLELKRVQDVKKIlsddla 1570
Cdd:pfam15921  146 QLQNT-------VHELEAAKCLKEDM------LNDSNTQIEQL--RKMMLSHEGVLQEIRSILVDFEEASGKKI------ 204
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1571 HLKERLSAVEDRSQYTdEINRLKEELNCSLkaeTNLKKEFATLKYKLETSTNDSEAKISDLLKQldHYTKVVEMLNNEKD 1650
Cdd:pfam15921  205 YEHDSMSTIHFRSLGS-AISKILRELDTEI---SYLKGRIFPVEDQLEALKSESQNKIELLLQQ--HQDRIEQLISEHEV 278
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1651 AISlaekELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITE-KIKYLEETLQLQ 1729
Cdd:pfam15921  279 EIT----GLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEdKIEELEKQLVLA 354
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1730 meqnsrNGELVKTLQAscngyKDKFDDEkQKNIDlyeenQTLQKLNTDLQLQLKNLheRLSDTTEKNAWlskIHELENMV 1809
Cdd:pfam15921  355 ------NSELTEARTE-----RDQFSQE-SGNLD-----DQLQKLLADLHKREKEL--SLEKEQNKRLW---DRDTGNSI 412
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1810 SL-----ETDLKYEEMKKNKSLERAVE-ELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYISQ---QELEMK 1880
Cdd:pfam15921  413 TIdhlrrELDDRNMEVQRLEALLKAMKsECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEEltaKKMTLE 492
                          490       500
                   ....*....|....*....|.
gi 730092     1881 KSIRDNSSYRDKVQEMAQEIE 1901
Cdd:pfam15921  493 SSERTVSDLTASLQEKERAIE 513
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1461-1679 7.46e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 47.41  E-value: 7.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1461 QKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNmasIIEKLKTQNKQKEKLiweREME 1540
Cdd:COG4942   37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKK---LRKQIADLNARLNAL---EVQE 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1541 RNDSDmQLQETLLELKRVQD---VKKILSDDLAHLKERLsavedrSQYTDEIN----RLKEELNCSLKAETNLKKEFATL 1613
Cdd:COG4942  111 REQRR-RLAEQLAALQRSGRnppPALLVSPEDAQRSVRL------AIYYGALNparaERIDALKATLKQLAAVRAEIAAE 183
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 730092   1614 KYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVS 1679
Cdd:COG4942  184 QAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAK 249
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
865-1718 7.77e-05

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 48.12  E-value: 7.77e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      865 KFNEQINKLKN---DLQEMESKKKFLEEKNqkTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKqFDDLVSEKD 941
Cdd:TIGR01612  868 QFAELTNKIKAeisDDKLNDYEKKFNDSKS--LINEINKSIEEEYQNINTLKKVDEYIKICENTKESIEK-FHNKQNILK 944
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      942 EISREKLEVAQN---LEEAHQ---------KIQGLQETIREreATLEKLHSKNNELIKQISDLNCDISKEQSSQslikes 1009
Cdd:TIGR01612  945 EILNKNIDTIKEsnlIEKSYKdkfdntlidKINELDKAFKD--ASLNDYEAKNNELIKYFNDLKANLGKNKENM------ 1016
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1010 klkLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVT----LEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKA 1085
Cdd:TIGR01612 1017 ---LYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIYNiideIEKEIGKNIELLNKEILEEAEINITNFNEIKEKL 1093
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1086 ALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITaelKETRIQLTEYKSNYQKIKE--EYSNFQRETKE 1163
Cdd:TIGR01612 1094 KHYNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIK---KKSENYIDEIKAQINDLEDvaDKAISNDDPEE 1170
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1164 QEQKKRNSLVESLNDSKIKELEARLSQEI--------SLNQYLNKRIS-GNSVETNISSTRRSTSYSDDPLDK--EDIIK 1232
Cdd:TIGR01612 1171 IEKKIENIVTKIDKKKNIYDEIKKLLNEIaeiekdktSLEEVKGINLSyGKNLGKLFLEKIDEEKKKSEHMIKamEAYIE 1250
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1233 KYYDLQLAFTEITRNLENEIEEKKNL----ISRLRFTETRLASSSfEDQKIKAQMKKLKKLIQDMDPSIPLDSILNEPLD 1308
Cdd:TIGR01612 1251 DLDEIKEKSPEIENEMGIEMDIKAEMetfnISHDDDKDHHIISKK-HDENISDIREKSLKIIEDFSEESDINDIKKELQK 1329
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1309 NCPDKE---SDINKLMLEVDYLKRQLDIetrahydaeNAISALHSKFRKIQGESSLSSSDIyKLKFEASEERVKSLED-- 1383
Cdd:TIGR01612 1330 NLLDAQkhnSDINLYLNEIANIYNILKL---------NKIKKIIDEVKEYTKEIEENNKNI-KDELDKSEKLIKKIKDdi 1399
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1384 KLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKeallSEQLDRLQKD 1463
Cdd:TIGR01612 1400 NLEECKSKIESTLDDKDIDECIKKIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADNK----SQHILKIKKD 1475
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1464 LESTERQKELlsSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQN------KQKEKLIWER 1537
Cdd:TIGR01612 1476 NATNDHDFNI--NELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALAIKNkfaktkKDSEIIIKEI 1553
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1538 EMERNDSDMQLQETLLELKRVQDVKKILSDDLAHLKERLSA-------VEDRSQYTDEINRLKEELNCSLKAETNLKKEF 1610
Cdd:TIGR01612 1554 KDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAaidiqlsLENFENKFLKISDIKKKINDCLKETESIEKKI 1633
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1611 ATLkykletSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELyqkyEALNTECESLKgkiVSLTKIKQELESD 1690
Cdd:TIGR01612 1634 SSF------SIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKEL----DELDSEIEKIE---IDVDQHKKNYEIG 1700
                          890       900
                   ....*....|....*....|....*...
gi 730092     1691 LNQKTDALQISNAALSSSTQKNKEITEK 1718
Cdd:TIGR01612 1701 IIEKIKEIAIANKEEIESIKELIEPTIE 1728
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
877-1332 8.08e-05

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 47.79  E-value: 8.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      877 LQEMESKKKFLEEKNQKTVNELENTQDLL---NQEKENLRKNESLLnrvktssetlqkqfddlvsekdeisreklevaqn 953
Cdd:pfam05483  217 LKEDHEKIQHLEEEYKKEINDKEKQVSLLliqITEKENKMKDLTFL---------------------------------- 262
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      954 LEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLI-----------------KESKLKLENE 1016
Cdd:pfam05483  263 LEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALeedlqiatkticqlteeKEAQMEELNK 342
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1017 IK--------RLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEK-------------NCNIAMSRLQSLVTENSDLRS 1075
Cdd:pfam05483  343 AKaahsfvvtEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKksseleemtkfknNKEVELEELKKILAEDEKLLD 422
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1076 KNENFKKekaaLNNQLKNKESE---LLKMKEK-IDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIK 1151
Cdd:pfam05483  423 EKKQFEK----IAEELKGKEQElifLLQAREKeIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLL 498
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1152 EEYSNFQRETKEQEQKKRNSLVESLNDSK-----IKELEARLSQEISLNQYLnKRISGNSVETNISSTRRSTSYSDDPLD 1226
Cdd:pfam05483  499 LENKELTQEASDMTLELKKHQEDIINCKKqeermLKQIENLEEKEMNLRDEL-ESVREEFIQKGDEVKCKLDKSEENARS 577
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1227 KEDIIKKYYDLQLAFTEITRNLENEIEEKKNLISRLRFTETRL-ASSSFEDQKIKAQMKKLKKLIQDMDPSI-PLDSILN 1304
Cdd:pfam05483  578 IEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALkKKGSAENKQLNAYEIKVNKLELELASAKqKFEEIID 657
                          490       500
                   ....*....|....*....|....*...
gi 730092     1305 EPLDNCPDKESDINKLMLEVDYLKRQLD 1332
Cdd:pfam05483  658 NYQKEIEDKKISEEKLLEEVEKAKAIAD 685
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
987-1193 8.86e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 47.02  E-value: 8.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    987 KQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDiklvtlEKNCNIAMSRLQsl 1066
Cdd:COG4942   38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA------DLNARLNALEVQ-- 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1067 vtensdLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKqrddAVSEHGKITAELKETRIQLTEYKSN 1146
Cdd:COG4942  110 ------EREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGA----LNPARAERIDALKATLKQLAAVRAE 179
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 730092   1147 YQKIKEEYSNFQRETKEQEQK------KRNSLVESLN------DSKIKEL---EARLSQEIS 1193
Cdd:COG4942  180 IAAEQAELTTLLSEQRAQQAKlaqlleERKKTLAQLNselsadQKKLEELranESRLKNEIA 241
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
1574-1884 1.17e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 47.37  E-value: 1.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1574 ERLSAVEDrsQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAIS 1653
Cdd:TIGR02169  187 ERLDLIID--EKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELE 264
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1654 LAEKELYQKYEALNTECESL-KGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKI-KYLEETLQLQME 1731
Cdd:TIGR02169  265 KRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIdKLLAEIEELERE 344
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1732 QNSRNGELVKtlqascngYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSL 1811
Cdd:TIGR02169  345 IEEERKRRDK--------LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQ 416
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 730092     1812 ETDLKYEEMK-KNKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYISQQELEMKKSIR 1884
Cdd:TIGR02169  417 RLSEELADLNaAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
919-1084 1.20e-04

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 45.82  E-value: 1.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    919 LNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNEL--IKQISDLNCDI 996
Cdd:COG1579   19 KDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVkdERELRALNIEI 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    997 SKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTE-NSDLRS 1075
Cdd:COG1579   99 QIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKlDPELLS 178

                 ....*....
gi 730092   1076 KNENFKKEK 1084
Cdd:COG1579  179 EYERIRKNK 187
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
856-1516 1.49e-04

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 46.96  E-value: 1.49e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      856 SSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQ------KTVNELENTQDLLNQEKENLRKNESLLNRVKTSS--E 927
Cdd:TIGR00606  418 QSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEelkfviKELQQLEGSSDRILELDQELRKAERELSKAEKNSltE 497
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      928 TLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQET--IREREATLEKLHSKNN-----ELIKQISDLNCDISKEQ 1000
Cdd:TIGR00606  498 TLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMemLTKDKMDKDEQIRKIKsrhsdELTSLLGYFPNKKQLED 577
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1001 SSQSLIKESKL-------------KLENEIKRLKDVINSKEEEIKSFNDKL--SSSEEDLDIKLVTLEKN---------- 1055
Cdd:TIGR00606  578 WLHSKSKEINQtrdrlaklnkelaSLEQNKNHINNELESKEEQLSSYEDKLfdVCGSQDEESDLERLKEEieksskqram 657
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1056 ----CNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITA 1131
Cdd:TIGR00606  658 lagaTAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQS 737
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1132 ELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEqkkrnSLVESLNDSkiKELEARLSQEISLNQYLNKRISgnSVETNI 1211
Cdd:TIGR00606  738 IIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQE-----TLLGTIMPE--EESAKVCLTDVTIMERFQMELK--DVERKI 808
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1212 SSTRRSTSYSDDPLDKEDIIKKYYDLQLAFTEITRNLE----------NEIEEKKNLISRLRFTETRLASSSFEDQKIKA 1281
Cdd:TIGR00606  809 AQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIElnrkliqdqqEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEE 888
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1282 QMKKLKKLIQDMDPSIP------------LDSILNEPLDNCPDKESDINKLMLEVDYLKRQLDIETRAHYDAENAISALH 1349
Cdd:TIGR00606  889 QLVELSTEVQSLIREIKdakeqdspletfLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGK 968
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1350 SKFRKiQGESSLSSSDIyklKFEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRyyklenyKLQEIL 1429
Cdd:TIGR00606  969 DDYLK-QKETELNTVNA---QLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELK-------EVEEEL 1037
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1430 NESNGKLSQltLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENcmDDLQGNELRLREHIHALKQA 1509
Cdd:TIGR00606 1038 KQHLKEMGQ--MQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKYREMMIVMRTT 1113

                   ....*..
gi 730092     1510 EEDVKNM 1516
Cdd:TIGR00606 1114 ELVNKDL 1120
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
870-1566 1.53e-04

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 46.96  E-value: 1.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      870 INKLKNDLQEMESKKkflEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISR---- 945
Cdd:TIGR00606  410 AAQLCADLQSKERLK---QEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKaere 486
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      946 -EKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNE-------------LIKQISDLNCDISKEQSSQSLIKESKL 1011
Cdd:TIGR00606  487 lSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQlnhhtttrtqmemLTKDKMDKDEQIRKIKSRHSDELTSLL 566
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1012 KLENEIKRLKDVINSKEEEIKSFNDKLSsseeDLDIKLVTLEKNCNIAMSRLQSLVTENSDLrsknenfkKEKAALNNQL 1091
Cdd:TIGR00606  567 GYFPNKKQLEDWLHSKSKEINQTRDRLA----KLNKELASLEQNKNHINNELESKEEQLSSY--------EDKLFDVCGS 634
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1092 KNKESELLKMKEKIDNHKKELA----------TFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRET 1161
Cdd:TIGR00606  635 QDEESDLERLKEEIEKSSKQRAmlagatavysQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKST 714
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1162 KEQEQKKRNSLVE------------SLNDSKIKELEARLSQEISLNQYLNKRISGNsvETNISSTRRSTSYSDDPLDKED 1229
Cdd:TIGR00606  715 ESELKKKEKRRDEmlglapgrqsiiDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQ--ETLLGTIMPEEESAKVCLTDVT 792
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1230 IIKKyydLQLAFTEITRNLENEIEEKKNLISRLRFTETR--LASSSFEDQKIKAQMKKLKKLIQDMDPSIP-LDSILNE- 1305
Cdd:TIGR00606  793 IMER---FQMELKDVERKIAQQAAKLQGSDLDRTVQQVNqeKQEKQHELDTVVSKIELNRKLIQDQQEQIQhLKSKTNEl 869
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1306 ---------PLDNCPDKESDINKLMLEVDYLKRQLDietrahyDAENAISALHSKFRKIQGESSLSSSdiyklkfeASEE 1376
Cdd:TIGR00606  870 kseklqigtNLQRRQQFEEQLVELSTEVQSLIREIK-------DAKEQDSPLETFLEKDQQEKEELIS--------SKET 934
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1377 RVKSLEDKLKTMPLRdrtnlpVGDIIKNRDSISKYEEEIRyyklENYKLQEILNesngkLSQLTLDLRQSKSKEALLSEQ 1456
Cdd:TIGR00606  935 SNKKAQDKVNDIKEK------VKNIHGYMKDIENKIQDGK----DDYLKQKETE-----LNTVNAQLEECEKHQEKINED 999
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1457 LDRLQKDLESTERQKELLSSTIKQQKQ-------QFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNK- 1528
Cdd:TIGR00606 1000 MRLMRQDIDTQKIQERWLQDNLTLRKRenelkevEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKg 1079
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|..
gi 730092     1529 -QKEKLIWEREM---ERNDSDMQLQETLLELKRVQDVKKILS 1566
Cdd:TIGR00606 1080 yEKEIKHFKKELrepQFRDAEEKYREMMIVMRTTELVNKDLD 1121
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
854-1583 1.53e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 47.02  E-value: 1.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      854 LTSSNDMTRTKKF--NEQINKLKNDLQEMESKK--------------KFLEEKNQKTVNELENT----QDLL---NQEKE 910
Cdd:pfam15921   94 LNESNELHEKQKFylRQSVIDLQTKLQEMQMERdamadirrresqsqEDLRNQLQNTVHELEAAkclkEDMLndsNTQIE 173
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      911 NLRK----NESLLNRVKTSSETLQKQFDDLVSEKDEISREKLE-----VAQNLEEAHQKIQGLQETIREREATLEKLHSK 981
Cdd:pfam15921  174 QLRKmmlsHEGVLQEIRSILVDFEEASGKKIYEHDSMSTIHFRslgsaISKILRELDTEISYLKGRIFPVEDQLEALKSE 253
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      982 NN---ELIKQ---------ISDLNCDIS------KEQSSQSLIKESKLKLENEIKRLKDV-----INSKEEEIKSFNDKL 1038
Cdd:pfam15921  254 SQnkiELLLQqhqdrieqlISEHEVEITgltekaSSARSQANSIQSQLEIIQEQARNQNSmymrqLSDLESTVSQLRSEL 333
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1039 SSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEK-------------- 1104
Cdd:pfam15921  334 REAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsit 413
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1105 IDNHKKEL--ATFSKQRDDAV-----SE-HGKITAELKETR-------------IQLTEYKSNYQKIKEEYSNfQRETKE 1163
Cdd:pfam15921  414 IDHLRRELddRNMEVQRLEALlkamkSEcQGQMERQMAAIQgkneslekvssltAQLESTKEMLRKVVEELTA-KKMTLE 492
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1164 QEQKKRNSLVESLND---------SKIKELEARLSQEISLNQYL-NKRISGNSVETNISSTRRSTSYSDDPLD------- 1226
Cdd:pfam15921  493 SSERTVSDLTASLQEkeraieatnAEITKLRSRVDLKLQELQHLkNEGDHLRNVQTECEALKLQMAEKDKVIEilrqqie 572
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1227 -KEDIIKKYYDLQLAFTEITRNLENEIEEKknlisRLRFTETRLasssFEDQKiKAQMKKLKKLIQDMD-PSIPLDSILN 1304
Cdd:pfam15921  573 nMTQLVGQHGRTAGAMQVEKAQLEKEINDR-----RLELQEFKI----LKDKK-DAKIRELEARVSDLElEKVKLVNAGS 642
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1305 EPLDNCPDKESDINKLMLEVDYLKRQLDIETRAHydaenaiSALHSKFRKIQGESSLSSSDIyKLKFEASEERVKSLEDK 1384
Cdd:pfam15921  643 ERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDY-------EVLKRNFRNKSEEMETTTNKL-KMQLKSAQSELEQTRNT 714
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1385 LKTMPLRDRTNLPVG-----DIIKNRDSISKYEEEIRYYK---LENYKLQEILNESNGKLSQLTLDLRQSKSKEA----L 1452
Cdd:pfam15921  715 LKSMEGSDGHAMKVAmgmqkQITAKRGQIDALQSKIQFLEeamTNANKEKHFLKEEKNKLSQELSTVATEKNKMAgeleV 794
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1453 LSEQLDRLQKDLESTErqkellsSTIKQQKQQFENCMDDLQGNElrlREHIHALKQAEEDVKNMASiiEKLKTQNKQKEK 1532
Cdd:pfam15921  795 LRSQERRLKEKVANME-------VALDKASLQFAECQDIIQRQE---QESVRLKLQHTLDVKELQG--PGYTSNSSVKPR 862
                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 730092     1533 LIWEREMERNDSDMQLQETLLEL-----KRVQDVKKILSDDLAHLKERLSAVEDRS 1583
Cdd:pfam15921  863 LLQPASFTRPHSNVPSSQSTASFlshhsIKCEMLKEDPTRDLKQLLQELRSVINEE 918
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
835-1648 1.86e-04

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 46.69  E-value: 1.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      835 NRLVKEDPWFNLFIRIKPLLTSSNDM-TRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEkenlr 913
Cdd:pfam01576  378 AKQALESENAELQAELRSLQQAKQDSeHKRKKLEGQLQELQSRLSESERQRAELAEKLSKLQSELESVSSLLNEA----- 452
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      914 knESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLN 993
Cdd:pfam01576  453 --EGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSSRLRQLEDEKNSLQEQLEEEEEAKRNVERQLQTLQAQLSDLK 530
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      994 CDISKEQSSQSLIKESKLKLENEIkrlkDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLekncNIAMSRLQSLVtenSDL 1073
Cdd:pfam01576  531 KKLEEDAGAVEALEEGRKRLQREL----EALTQRLEEKAAAYDKLEKTKNRLQQELDDL----LVDLDHQRQLV---SNL 599
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1074 RSKNENFkkekaalnNQLKNKEsellkmkekidnhKKELATFSKQRDDAVSEhgkitAELKETR-IQLTEYKSNYQKIKE 1152
Cdd:pfam01576  600 EKKQKKF--------DQMLAEE-------------KAISARYAEERDRAEAE-----AREKETKaLSLARALEEALDAKE 653
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1153 EysnFQRETKeQEQKKRNSLVESLND--SKIKELEArlsqeislnqylnkriSGNSVETNISSTRRSTSYSDDPLDK-ED 1229
Cdd:pfam01576  654 E---LERQNK-QLRAEMEDLVSSKDDvgKNVHELER----------------SKRALEQQVEEMKTQLEELEDELQAtED 713
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1230 I-IKKYYDLQLAFTEITRNL----ENEIEEKKNLISRLRFTETRLAsssfEDQKIKAQMKKLKKliqdmdpsipldsiln 1304
Cdd:pfam01576  714 AkLRLEVNMQALKAQFERDLqardEQGEEKRRQLVKQVRELEAELE----DERKQRAQAVAAKK---------------- 773
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1305 epldncpdkesdinKLMLEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQ---GESSLSSSDIYKLKFEaSEERVKSL 1381
Cdd:pfam01576  774 --------------KLELDLKELEAQIEAANKGRDEAVKQLKKLQAQMKDLQrelDEARASRDEIFAQSKE-SEKKLKSL 838
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1382 EdklktmplrdrtnlpvGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQ 1461
Cdd:pfam01576  839 E----------------AELLQLQEDLAAAERARRQAQQERDELAEEIASGNSGKSALLDEKRRLEARIAQLEEELEEEQ 902
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1462 KDLEsterqkeLLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKL-IWEREME 1540
Cdd:pfam01576  903 SNTE-------LLNDRLRKLTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGTVKSKYKSsIAALEAK 975
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1541 RNDSDMQLQEtllELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKAetnlkkefatLKYKLETS 1620
Cdd:pfam01576  976 IAQLEEQLEQ---ESRERQAANKLVRRTEKKLKEVLLQVEDERRNADQYKDQAEKGNSRLKQ----------LKRQLEEA 1042
                          810       820       830
                   ....*....|....*....|....*....|.
gi 730092     1621 TNDSE---AKISDLLKQLDHYTKVVEMLNNE 1648
Cdd:pfam01576 1043 EEEASranAARRKLQRELDDATESAEAMNRE 1073
PTZ00121 PTZ00121
MAEBL; Provisional
1370-1899 1.87e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 46.67  E-value: 1.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1370 KFEASEERVKSLEDKLKTMPLRDRtnlpvGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSK 1449
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKK-----AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1450 EAllsEQLDRLQKDLESTERQKELLSSTIKQQKQQfencmDDLQGNELRLREHIHALKQAEEdvKNMASIIEKLKTQNKQ 1529
Cdd:PTZ00121 1389 EK---KKADEAKKKAEEDKKKADELKKAAAAKKKA-----DEAKKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAKK 1458
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1530 KEKLIWEREMERNDSDMQlqetllelKRVQDVKKilSDDLAHLKERLSAVEDRSQYTDEINRLKEELNcslKAETNLKKE 1609
Cdd:PTZ00121 1459 AEEAKKKAEEAKKADEAK--------KKAEEAKK--ADEAKKKAEEAKKKADEAKKAAEAKKKADEAK---KAEEAKKAD 1525
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1610 FATlkyKLETSTNDSEAKISDLLKQLDHYTKVVEMLN-NEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELE 1688
Cdd:PTZ00121 1526 EAK---KAEEAKKADEAKKAEEKKKADELKKAEELKKaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1689 SDLNQKTDALQISNAALSSSTQKNKEitEKIKYLEETLQLQMEQNSRNGELVKTLQASCN----GYKDKFDDEKQKNIDL 1764
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKA--EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKikaaEEAKKAEEDKKKAEEA 1680
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1765 YEENQTLQKLNTDLQLQ------LKNLHERLSDTTEKNAWLSKIHElENMVSLETDLKYEEMKKNKSLERAVEELQTKNS 1838
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEaeeakkAEELKKKEAEEKKKAEELKKAEE-ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 730092    1839 QQtdvieLANKNRSEFEEATLKYEAQISD-LEKYISQQELEMKKSIRDNSSYRDKVQEMAQE 1899
Cdd:PTZ00121 1760 AH-----LKKEEEKKAEEIRKEKEAVIEEeLDEEDEKRRMEVDKKIKDIFDNFANIIEGGKE 1816
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
1372-1899 2.20e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 46.25  E-value: 2.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1372 EASEERVKSlEDKLKTMPLRDRTNlPVGDIIKNRDSISKYEEEiRYYKLENyKLQEILNESNGKLsQLTLDLRQSKSKEA 1451
Cdd:pfam15921  198 EASGKKIYE-HDSMSTIHFRSLGS-AISKILRELDTEISYLKG-RIFPVED-QLEALKSESQNKI-ELLLQQHQDRIEQL 272
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1452 L---------LSEQLDRLQKDLESTERQKELLSSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVknmasiIEK 1522
Cdd:pfam15921  273 IseheveitgLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDK------IEE 346
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1523 LKTQ----NKQKEKLIWEREM---ERNDSDMQLQETLLEL--------------KRVQDVKKILSDDLAHLKERLsavED 1581
Cdd:pfam15921  347 LEKQlvlaNSELTEARTERDQfsqESGNLDDQLQKLLADLhkrekelslekeqnKRLWDRDTGNSITIDHLRREL---DD 423
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1582 RSQytdEINRLkEELNCSLKAETN--LKKEFATLKYKletstNDSEAKISDLLKQLDH----YTKVVEMLNNEKDAISLA 1655
Cdd:pfam15921  424 RNM---EVQRL-EALLKAMKSECQgqMERQMAAIQGK-----NESLEKVSSLTAQLEStkemLRKVVEELTAKKMTLESS 494
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1656 EKELyqkyealnteceslkgkivsltkikQELESDLNQKTDALQISNAalssstqknkEITEKIKYLEetLQLQMEQNSR 1735
Cdd:pfam15921  495 ERTV-------------------------SDLTASLQEKERAIEATNA----------EITKLRSRVD--LKLQELQHLK 537
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1736 N-GELVKTLQASCNGYKDKFDdEKQKNIDLYEEnqtlqklntdlqlqlknlherlsdtteknawlskihELENMVSLETD 1814
Cdd:pfam15921  538 NeGDHLRNVQTECEALKLQMA-EKDKVIEILRQ------------------------------------QIENMTQLVGQ 580
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1815 LKyeemkknksleRAVEELQTKNSQQTDVIelaNKNRSEFEEATL---KYEAQISDLEKYISQQELEMKKSIRDNSSYRD 1891
Cdd:pfam15921  581 HG-----------RTAGAMQVEKAQLEKEI---NDRRLELQEFKIlkdKKDAKIRELEARVSDLELEKVKLVNAGSERLR 646

                   ....*...
gi 730092     1892 KVQEMAQE 1899
Cdd:pfam15921  647 AVKDIKQE 654
PRK12704 PRK12704
phosphodiesterase; Provisional
864-989 2.31e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 45.92  E-value: 2.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     864 KKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKdei 943
Cdd:PRK12704   64 EEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ--- 140
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 730092     944 sREKLEVAQNL--EEAHQKIqgLQETirEREATLEKLHsknneLIKQI 989
Cdd:PRK12704  141 -LQELERISGLtaEEAKEIL--LEKV--EEEARHEAAV-----LIKEI 178
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
905-1192 2.68e-04

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 45.97  E-value: 2.68e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      905 LNQEKENLRKNESLLNRVKTSSETLQKQFDDlvsekdeiSREKLEV-AQNLEEAHQKIQGLQETIREREATLEKLHSKNN 983
Cdd:pfam10174  291 IDQLKQELSKKESELLALQTKLETLTNQNSD--------CKQHIEVlKESLTAKEQRAAILQTEVDALRLRLEEKESFLN 362
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      984 ELIKQISDLNCDISKEQSSQS------LIKESKLK-LENEIKRLKDVINSKEEEIKSFNDKLSSSEED---LDIKLVTLE 1053
Cdd:pfam10174  363 KKTKQLQDLTEEKSTLAGEIRdlkdmlDVKERKINvLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDssnTDTALTTLE 442
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1054 KncniAMS-------RLQ--------SLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKE----------KIDNH 1108
Cdd:pfam10174  443 E----ALSekeriieRLKeqreredrERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEhasslassglKKDSK 518
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1109 KKELATFSKQRDDAVS----EHGKI-TAELKET-------RIQLTEYKSNYQkiKEEYSNFQRET-------KEQEQKKr 1169
Cdd:pfam10174  519 LKSLEIAVEQKKEECSklenQLKKAhNAEEAVRtnpeindRIRLLEQEVARY--KEESGKAQAEVerllgilREVENEK- 595
                          330       340
                   ....*....|....*....|...
gi 730092     1170 nslveSLNDSKIKELEARLSQEI 1192
Cdd:pfam10174  596 -----NDKDKKIAELESLTLRQM 613
PRK10361 PRK10361
DNA recombination protein RmuC; Provisional
1631-1814 2.87e-04

DNA recombination protein RmuC; Provisional


Pssm-ID: 182409 [Multi-domain]  Cd Length: 475  Bit Score: 45.75  E-value: 2.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1631 LLKQLDHYTKVVEMLNNEKD---AISLAEKELYQKyEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNA---- 1703
Cdd:PRK10361   21 LFASYQHAQQKAEQLAEREEmvaELSAAKQQITQS-EHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQhadd 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1704 ---ALSSSTQKNKEITEKI--KYLEETLQLQMEQN--SRNGeLVKTLQASCNGYK----DKFDDEKQKNIDLYEENQTLQ 1772
Cdd:PRK10361  100 kirQMINSEQRLSEQFENLanRIFEHSNRRVDEQNrqSLNS-LLSPLREQLDGFRrqvqDSFGKEAQERHTLAHEIRNLQ 178
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 730092    1773 KLNTDLQLQLKNLHERLS-DTTEKNAW-------------LSKIHELENMVSLETD 1814
Cdd:PRK10361  179 QLNAQMAQEAINLTRALKgDNKTQGNWgevvltrvleasgLREGYEYETQVSIEND 234
PRK01156 PRK01156
chromosome segregation protein; Provisional
1447-1907 2.95e-04

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 46.05  E-value: 2.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1447 KSKEALLSEQLDrlqkdLESTERQKELLSSTIKQQKQQFENcMDDLQGNELRLREHIHALKQAEEDVKNMASIIEKlktq 1526
Cdd:PRK01156  149 AQRKKILDEILE-----INSLERNYDKLKDVIDMLRAEISN-IDYLEEKLKSSNLELENIKKQIADDEKSHSITLK---- 218
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1527 nkQKEKLIWEREMERNDSDMqLQETLLELKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEIN-RLKEELNCSLKAETN 1605
Cdd:PRK01156  219 --EIERLSIEYNNAMDDYNN-LKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEeRHMKIINDPVYKNRN 295
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1606 LKKEFATLKYKLE-------------TSTNDSEAKISDLLKQLDHYTKV---VEMLNNEKDAIslaeKELYQKYEALNTE 1669
Cdd:PRK01156  296 YINDYFKYKNDIEnkkqilsnidaeiNKYHAIIKKLSVLQKDYNDYIKKksrYDDLNNQILEL----EGYEMDYNSYLKS 371
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1670 CESLKGKIVSLTKIKQELESDLNQKTDALQIS----NAALSSSTQKNKEITEKIKYLEE---TLQLQMEQNSRNGELVKT 1742
Cdd:PRK01156  372 IESLKKKIEEYSKNIERMSAFISEILKIQEIDpdaiKKELNEINVKLQDISSKVSSLNQrirALRENLDELSRNMEMLNG 451
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1743 lQASCNGYKDKFDDEKQKNI------DLYEENQTLQKLNTDLQ------LQLKNLHERLSD------TTEKNAWLSKIHE 1804
Cdd:PRK01156  452 -QSVCPVCGTTLGEEKSNHIinhyneKKSRLEEKIREIEIEVKdidekiVDLKKRKEYLESeeinksINEYNKIESARAD 530
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1805 LENMVSLETDLKYEEMKKNKSLER----AVEELQTKNSQ------QTDVIELANkNRSEFEEATlkyeAQISDLEKYISQ 1874
Cdd:PRK01156  531 LEDIKIKINELKDKHDKYEEIKNRykslKLEDLDSKRTSwlnalaVISLIDIET-NRSRSNEIK----KQLNDLESRLQE 605
                         490       500       510
                  ....*....|....*....|....*....|....
gi 730092    1875 QELEmkksIRDNSSYRDK-VQEMAQEIEFWKSRY 1907
Cdd:PRK01156  606 IEIG----FPDDKSYIDKsIREIENEANNLNNKY 635
PRK11637 PRK11637
AmiB activator; Provisional
1456-1658 3.20e-04

AmiB activator; Provisional


Pssm-ID: 236942 [Multi-domain]  Cd Length: 428  Bit Score: 45.45  E-value: 3.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1456 QLDRLQKDLESTERqkellssTIKQQKQQFENCMDDLQGNE-------LRLREHIHALKQAEEDVKNMASIIEKLKTQNK 1528
Cdd:PRK11637   48 QLKSIQQDIAAKEK-------SVRQQQQQRASLLAQLKKQEeaisqasRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1529 QKEKLIWERemerndSDM---QLQETLLELkrvqdvkkILSDDLAHLKERLSAV-----EDRSQYTDEINRLKEELNCSL 1600
Cdd:PRK11637  121 AQERLLAAQ------LDAafrQGEHTGLQL--------ILSGEESQRGERILAYfgylnQARQETIAELKQTREELAAQK 186
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 730092    1601 KAETNLKKEFATLKY-------KLETSTNDSEAKISDLLKQLDH-YTKVVEMLNNE---KDAISLAEKE 1658
Cdd:PRK11637  187 AELEEKQSQQKTLLYeqqaqqqKLEQARNERKKTLTGLESSLQKdQQQLSELRANEsrlRDSIARAERE 255
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
858-1054 3.80e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.43  E-value: 3.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      858 NDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLnrvktssETLQKQFDDLV 937
Cdd:TIGR02168  793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI-------ESLAAEIEELE 865
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      938 SEKDEISREklevaqnLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEI 1017
Cdd:TIGR02168  866 ELIEELESE-------LEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 730092     1018 KRLKDVINSK----EEEIKSFNDKLSSSEEDLDIKLVTLEK 1054
Cdd:TIGR02168  939 DNLQERLSEEysltLEEAEALENKIEDDEEEARRRLKRLEN 979
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
846-1111 4.83e-04

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 45.10  E-value: 4.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      846 LFIRIKPLLTSSNDMT-RTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLR----KNESLLN 920
Cdd:pfam05483  497 LLLENKELTQEASDMTlELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKckldKSEENAR 576
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      921 RVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISK-E 999
Cdd:pfam05483  577 SIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEiI 656
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1000 QSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNEN 1079
Cdd:pfam05483  657 DNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQE 736
                          250       260       270
                   ....*....|....*....|....*....|..
gi 730092     1080 FKKEKAALNNQLKNKESELLKMKEKIDNHKKE 1111
Cdd:pfam05483  737 QSSAKAALEIELSNIKAELLSLKKQLEIEKEE 768
PRK11281 PRK11281
mechanosensitive channel MscK;
1505-1792 5.22e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 45.29  E-value: 5.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1505 ALKQAEEDVKNMASIIEKLKTQNKQKEKliwerEMERNDSDMQLQETLLELKRVQDVKKilsdDLAHLKERLS-AVEDRS 1583
Cdd:PRK11281   27 ARAASNGDLPTEADVQAQLDALNKQKLL-----EAEDKLVQQDLEQTLALLDKIDRQKE----ETEQLKQQLAqAPAKLR 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1584 QYTDEINRLKEELNcslkaeTNLKKEFATLKYK-LETSTNDSEAKISDLLKQLDHYtkvvemlNNEkdAISL------AE 1656
Cdd:PRK11281   98 QAQAELEALKDDND------EETRETLSTLSLRqLESRLAQTLDQLQNAQNDLAEY-------NSQ--LVSLqtqperAQ 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1657 KELY---QKYEALNTECESLK--GKIVSLTKIKQ--------ELESDLNQKTdaLQISNAALSSSTQKNKEITEKIKYLE 1723
Cdd:PRK11281  163 AALYansQRLQQIRNLLKGGKvgGKALRPSQRVLlqaeqallNAQNDLQRKS--LEGNTQLQDLLQKQRDYLTARIQRLE 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1724 ETLQ-LQMEQNSRNGEL----VKTLQASCNGYKDKFD----DEKQKNIDLYEE--NQTlQKLNTDLQ--LQLKNLHERLS 1790
Cdd:PRK11281  241 HQLQlLQEAINSKRLTLsektVQEAQSQDEAARIQANplvaQELEINLQLSQRllKAT-EKLNTLTQqnLRVKNWLDRLT 319

                  ..
gi 730092    1791 DT 1792
Cdd:PRK11281  320 QS 321
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
1616-1895 6.51e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.66  E-value: 6.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1616 KLEtSTNDSEAKISDLL----KQLDHYTKVVEM------LNNEKDAISLA-----EKELYQKYEALNTECESLKGKIVSL 1680
Cdd:TIGR02168  180 KLE-RTRENLDRLEDILneleRQLKSLERQAEKaerykeLKAELRELELAllvlrLEELREELEELQEELKEAEEELEEL 258
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1681 TKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQnsrngelVKTLQASCNGYKDKFDDEKQK 1760
Cdd:TIGR02168  259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER-------LANLERQLEELEAQLEELESK 331
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1761 NIDLYEENQTLQKLNTDLQLQLKNLHERLsdtteknawlskihelenmvsletdlkyeemkknKSLERAVEELQTKNSQQ 1840
Cdd:TIGR02168  332 LDELAEELAELEEKLEELKEELESLEAEL----------------------------------EELEAELEELESRLEEL 377
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 730092     1841 TDVIELANKNRSEFEEATLKYEAQISDLEKYISQQELEMKKSIRDNSSYRDKVQE 1895
Cdd:TIGR02168  378 EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE 432
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
1372-1876 6.86e-04

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 44.65  E-value: 6.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1372 EASEERVKSLEDKLKtmPLRDRTNlpvgDIIKNRDSISKYEEEIRYY---KLENYKLQEILNESNGKLSQLT-------L 1441
Cdd:TIGR00606  234 ESSREIVKSYENELD--PLKNRLK----EIEHNLSKIMKLDNEIKALksrKKQMEKDNSELELKMEKVFQGTdeqlndlY 307
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1442 DLRQSKSKEAllSEQLDRLQKDLESTERQKELLSstikQQKQQFENCMDDLQGNELRLREHIHALK--------QAEEDV 1513
Cdd:TIGR00606  308 HNHQRTVREK--ERELVDCQRELEKLNKERRLLN----QEKTELLVEQGRLQLQADRHQEHIRARDsliqslatRLELDG 381
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1514 KNMASIIEKlktQNKQKEKLIWERE------MERNDSDMQLQETLLE--LKRVQDVKKILSDDLAHLKERLSAVEDRSQy 1585
Cdd:TIGR00606  382 FERGPFSER---QIKNFHTLVIERQedeaktAAQLCADLQSKERLKQeqADEIRDEKKGLGRTIELKKEILEKKQEELK- 457
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1586 tdeiNRLKEELNCSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQldhytkvVEMLNNEKDAISLAEKELYQKYEA 1665
Cdd:TIGR00606  458 ----FVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKE-------VKSLQNEKADLDRKLRKLDQEMEQ 526
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1666 LNTECESLKgKIVSLTKIK----QELESDLNQKTDAL-----------QISNAALSSSTQKNKEITEKIKYLEETLQLQM 1730
Cdd:TIGR00606  527 LNHHTTTRT-QMEMLTKDKmdkdEQIRKIKSRHSDELtsllgyfpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQ 605
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1731 EQNSRNGELvKTLQASCNGYKDKF------DDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLSK--- 1801
Cdd:TIGR00606  606 NKNHINNEL-ESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPvcq 684
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1802 ------------IHELENMVSLETDLKYEEMKKNKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLE 1869
Cdd:TIGR00606  685 rvfqteaelqefISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLK 764

                   ....*..
gi 730092     1870 KYISQQE 1876
Cdd:TIGR00606  765 NDIEEQE 771
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
847-1047 7.00e-04

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 44.53  E-value: 7.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     847 FIRIKPLLTSSNDMTRTKKFNEQINKLKNDLQEMESKKKFLEEKnqktVNELENTQDLLNQEKENLRKNESLlnrvkTSS 926
Cdd:PRK05771   65 YLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEE----ISELENEIKELEQEIERLEPWGNF-----DLD 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     927 ETLQKQFDDLVSEKDEISREKLEVAQNLEEahqkiQGLQETIRERE-------ATLEKLHSKNNELIKQISDLNCDISKE 999
Cdd:PRK05771  136 LSLLLGFKYVSVFVGTVPEDKLEELKLESD-----VENVEYISTDKgyvyvvvVVLKELSDEVEEELKKLGFERLELEEE 210
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 730092    1000 QSSQSLIKEsklkLENEIKRLKDVINSKEEEIKSFNDK----LSSSEEDLDI 1047
Cdd:PRK05771  211 GTPSELIRE----IKEELEEIEKERESLLEELKELAKKyleeLLALYEYLEI 258
AAA_13 pfam13166
AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA ...
832-1205 7.30e-04

AAA domain; This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.


Pssm-ID: 433006 [Multi-domain]  Cd Length: 712  Bit Score: 44.67  E-value: 7.30e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      832 RLYNRLVKEDpwfNLFI--RIKPLLTSSNDmtrTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQE- 908
Cdd:pfam13166   64 RVFNRDFVEE---NLSEqgEIKPIFTLGEE---SIEIQAKIAKLKKEIDDHEEKLEALTANLQKADKEKEKLEADFLDEc 137
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      909 -KENLRKNESLL--------------NRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEE------------AHQKI 961
Cdd:pfam13166  138 wKKIKRKKDSALsealngfryeanfkSRLLREIEKDNFNAGVLLTDEDLKAALETVFGDNKPEiaplsfdvidfdALEKA 217
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      962 QGLQETIREREATLEKLHSKNN---------ELIKQISDlNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIK 1032
Cdd:pfam13166  218 EILKQKVIGKSSAIAELIKNPDladwveeglELHKAHLD-TCPFCGQPLPAERKAALEAHFDDEFTEFQRRLQKLIEKYE 296
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1033 SfndKLSSSEEDLDiKLVTLEKNCNIAMSRLQSLvteNSDLRSKNENFKKEKAALNNQLKN--KESELLKMKEKIDNHKK 1110
Cdd:pfam13166  297 S---AISSLLAQLP-AVSDLASLLSAFELDVEDL---KAEAEVLNSQLDGLRQALEAKRKEpfKSIELDSVDAKIESIKD 369
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1111 ELATFSKQrddaVSEHGKITAELKETRIQLT---------EYKSNYQKIKEEYSNFQRETKEQEQKKRNSLVESLN-DSK 1180
Cdd:pfam13166  370 LVAAINEL----IAKHNEITDNLEEEKNKAKkklwlflveEFKAEIDEYKDAYAGLEKAINSLTKEIKNATAEIKKlRAE 445
                          410       420
                   ....*....|....*....|....*....
gi 730092     1181 IKELEARLSQEI----SLNQYLNKRISGN 1205
Cdd:pfam13166  446 IRELEKQLRDHKpgadEINKLLAAFGFGE 474
PRK01156 PRK01156
chromosome segregation protein; Provisional
883-1546 7.49e-04

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 44.51  E-value: 7.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     883 KKKFLEEKNQktVNELENTQDLLNQEKENLRKNESLLNRVKTS-------SETLQKQFDDLVSEKDEISREKLEVAQNLE 955
Cdd:PRK01156  151 RKKILDEILE--INSLERNYDKLKDVIDMLRAEISNIDYLEEKlkssnleLENIKKQIADDEKSHSITLKEIERLSIEYN 228
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     956 EAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISK-------EQSSQSLIKESKLKLENEIK---RLKDVIN 1025
Cdd:PRK01156  229 NAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKnnyykelEERHMKIINDPVYKNRNYINdyfKYKNDIE 308
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1026 SKEEEIKSFNDKLSSSEEDLDiKLVTLEKNCN---IAMSRLQSLVTENSDLRSKNENFkkekaalNNQLKNKESELLKMK 1102
Cdd:PRK01156  309 NKKQILSNIDAEINKYHAIIK-KLSVLQKDYNdyiKKKSRYDDLNNQILELEGYEMDY-------NSYLKSIESLKKKIE 380
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1103 EKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFqRETKEQEQKKRNSLV--------- 1173
Cdd:PRK01156  381 EYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRAL-RENLDELSRNMEMLNgqsvcpvcg 459
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1174 ESLNDSKIKELEARLSQEISlnqYLNKRISGNSVE-TNISSTRRSTSYSDDPLDKEDIIKkyydlQLAFTEITRNLENEI 1252
Cdd:PRK01156  460 TTLGEEKSNHIINHYNEKKS---RLEEKIREIEIEvKDIDEKIVDLKKRKEYLESEEINK-----SINEYNKIESARADL 531
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1253 EEKKNLISRLRFTETRLasssfedQKIKAQMKKLKklIQDMDPSIPLDSILNEPLDNCpdkesDINKLMLEVDYLKRQLD 1332
Cdd:PRK01156  532 EDIKIKINELKDKHDKY-------EEIKNRYKSLK--LEDLDSKRTSWLNALAVISLI-----DIETNRSRSNEIKKQLN 597
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1333 ietrahyDAENAISALHSKFRKIQgesSLSSSDIYKLkfeasEERVKSLEDKLKtmplrdrtnlpvgDIIKNRDSISKYE 1412
Cdd:PRK01156  598 -------DLESRLQEIEIGFPDDK---SYIDKSIREI-----ENEANNLNNKYN-------------EIQENKILIEKLR 649
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1413 EEIRYYKLENYKLQEI---LNESNGKLSQLTLDLRQSKSkeallseQLDRLQKDLESTERQKELLSSTIKQQKQQFENCM 1489
Cdd:PRK01156  650 GKIDNYKKQIAEIDSIipdLKEITSRINDIEDNLKKSRK-------ALDDAKANRARLESTIEILRTRINELSDRINDIN 722
                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 730092    1490 DDLQGNElRLREHIHALKQAEE--DVKNMASIIEKLKTQ--NKQKEKLIWEREMERNDSDM 1546
Cdd:PRK01156  723 ETLESMK-KIKKAIGDLKRLREafDKSGVPAMIRKSASQamTSLTRKYLFEFNLDFDDIDV 782
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
1008-1190 9.89e-04

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 43.95  E-value: 9.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1008 ESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDI---KLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEK 1084
Cdd:pfam05557    6 ESKARLSQLQNEKKQMELEHKRARIELERKASALARQLEResdRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKNL 85
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1085 AALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQ 1164
Cdd:pfam05557   86 EALNKKLNEKESQLADAREVISCLKNELSELRRQIQRQELELSSTNSELEELQERLDLQKAKAQEAEQLRQNLEAQQSSL 165
                          170       180
                   ....*....|....*....|....*.
gi 730092     1165 eqkkrnslveSLNDSKIKELEARLSQ 1190
Cdd:pfam05557  166 ----------AEAEQRIKELEFEIQS 181
WEMBL pfam05701
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ...
860-1161 1.18e-03

Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".


Pssm-ID: 428594 [Multi-domain]  Cd Length: 562  Bit Score: 43.86  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      860 MTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDL--- 936
Cdd:pfam05701   34 VERRKLVELELEKVQEEIPEYKKQSEAAEAAKAQVLEELESTKRLIEELKLNLERAQTEEAQAKQDSELAKLRVEEMeqg 113
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      937 -VSEKDEISREKLEVAQ--------NLEEAHQKIQGLQE----TIREREATLEKLH---SKNNELIKQISDLN------- 993
Cdd:pfam05701  114 iADEASVAAKAQLEVAKarhaaavaELKSVKEELESLRKeyasLVSERDIAIKRAEeavSASKEIEKTVEELTieliatk 193
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      994 ---------CDISKEQS-SQSLIKES-KLKLENEIKRLkdvinskEEEIKSFNDKLSSSeEDLDIKLVTlekncniAMSR 1062
Cdd:pfam05701  194 eslesahaaHLEAEEHRiGAALAREQdKLNWEKELKQA-------EEELQRLNQQLLSA-KDLKSKLET-------ASAL 258
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1063 LQSLvteNSDLRSKNENFKKEKAALNNQLKNKESELlkmKEKIDNHKKELATFSKQRDDAvsehgkiTAELKETRIQLTE 1142
Cdd:pfam05701  259 LLDL---KAELAAYMESKLKEEADGEGNEKKTSTSI---QAALASAKKELEEVKANIEKA-------KDEVNCLRVAAAS 325
                          330       340
                   ....*....|....*....|
gi 730092     1143 YKSNYQKIKEEYSNF-QRET 1161
Cdd:pfam05701  326 LRSELEKEKAELASLrQREG 345
PLN03229 PLN03229
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
1388-1728 1.47e-03

acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional


Pssm-ID: 178768 [Multi-domain]  Cd Length: 762  Bit Score: 43.69  E-value: 1.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1388 MPLRDRTNLPVGDIiknRDSISKYEEEIRYYKLENYKLQE-ILNESNGKLSQlTLDLRQSKSKEAL-LSEQLDRLQKDLE 1465
Cdd:PLN03229  421 MKKREAVKTPVREL---EGEVEKLKEQILKAKESSSKPSElALNEMIEKLKK-EIDLEYTEAVIAMgLQERLENLREEFS 496
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1466 STERQKELLSSTIKQQkqqFENCMDDLQ------GNELRLREHIHALKQAEEDVKNM--ASIIEKLKTQNKQKEKLIWER 1537
Cdd:PLN03229  497 KANSQDQLMHPVLMEK---IEKLKDEFNkrlsraPNYLSLKYKLDMLNEFSRAKALSekKSKAEKLKAEINKKFKEVMDR 573
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1538 EmerndsdmQLQETLLELK-RVQDVKKILSDDL-AHLKERLSAVEDRSQYtdEINRLKEELNCSLKAETNLKKEFAT--- 1612
Cdd:PLN03229  574 P--------EIKEKMEALKaEVASSGASSGDELdDDLKEKVEKMKKEIEL--ELAGVLKSMGLEVIGVTKKNKDTAEqtp 643
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1613 ---LKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELEs 1689
Cdd:PLN03229  644 ppnLQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFE- 722
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 730092    1690 DLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETLQL 1728
Cdd:PLN03229  723 ELEAELAAARETAAESNGSLKNDDDKEEDSKEDGSRVEV 761
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
871-1090 1.61e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 43.50  E-value: 1.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     871 NKLKNDLQEMESKKKfleeKNQ-KTVNELENTQDLLNQEKENL---RKNESLLNRVKTSSETLQKQFDDLVSEK------ 940
Cdd:PRK10929   26 KQITQELEQAKAAKT----PAQaEIVEALQSALNWLEERKGSLeraKQYQQVIDNFPKLSAELRQQLNNERDEPrsvppn 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     941 ---DEISREKLEV-AQNLEEAHQkIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLK-LEN 1015
Cdd:PRK10929  102 mstDALEQEILQVsSQLLEKSRQ-AQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTaLQA 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1016 EIKRLKDVINSKEEEIKSFNDK----------LSSSEEDLDIKLVTLEKNCNI--------AMSRLQSLVTENSDL-RSK 1076
Cdd:PRK10929  181 ESAALKALVDELELAQLSANNRqelarlrselAKKRSQQLDAYLQALRNQLNSqrqreaerALESTELLAEQSGDLpKSI 260
                         250
                  ....*....|....*..
gi 730092    1077 NENFKKEK---AALNNQ 1090
Cdd:PRK10929  261 VAQFKINRelsQALNQQ 277
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
863-1171 1.75e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 43.29  E-value: 1.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      863 TKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDD-LVSEKD 941
Cdd:pfam12128  599 EEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKaLAERKD 678
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      942 --EISREKLEVAQNLEEAHQK--IQGLQETIRE-REATLEKLHSKNNELIKQISDLNCDISKEQSS-QSLIKESKLKLEN 1015
Cdd:pfam12128  679 saNERLNSLEAQLKQLDKKHQawLEEQKEQKREaRTEKQAYWQVVEGALDAQLALLKAAIAARRSGaKAELKALETWYKR 758
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1016 EIKRL---KDVINSKEEEIKSFNDKLSSSEED-----------------LDIKLVTLEKNCNIAMSRL-QSLVTENSDLR 1074
Cdd:pfam12128  759 DLASLgvdPDVIAKLKREIRTLERKIERIAVRrqevlryfdwyqetwlqRRPRLATQLSNIERAISELqQQLARLIADTK 838
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1075 SKNENFKKEKAALNNQLKNKESELLKMKEKIdnhkKELATFSKQRDDAVSEHgkitaELKETRIQLTEYKSNYQKIKEEY 1154
Cdd:pfam12128  839 LRRAKLEMERKASEKQQVRLSENLRGLRCEM----SKLATLKEDANSEQAQG-----SIGERLAQLEDLKLKRDYLSESV 909
                          330
                   ....*....|....*..
gi 730092     1155 SNFQRETKEQEQKKRNS 1171
Cdd:pfam12128  910 KKYVEHFKNVIADHSGS 926
COG5644 COG5644
U3 small nucleolar RNA-associated protein 14 [Function unknown];
860-1186 1.85e-03

U3 small nucleolar RNA-associated protein 14 [Function unknown];


Pssm-ID: 227931 [Multi-domain]  Cd Length: 869  Bit Score: 43.15  E-value: 1.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    860 MTRTKKFNEQINKLKNDLQEMESKKKFLEEKNQKTVNElentqDLLNQEKENLRKNESLLNRVKTSSETlqkqfddlvse 939
Cdd:COG5644  385 MFREERKAKRVAKIKSKTYRKIRKNRKEKEMALIPKSE-----DLENEKSEEARALERMTQRHKNTSSW----------- 448
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    940 kdeiSREKLEVAQNLEEAHQKIQglqETIREREATLEKLHSKN---NELIKQISDLNCDISKEQSSQSLIKESKLKLEN- 1015
Cdd:COG5644  449 ----TRKMLERASHGEGTREAVN---EQIRKGDELMQRIHGKEimdGEDVSEFSDSDYDTNEQVSTAFEKIRNEEELKGv 521
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1016 -EIKRLKDVINSKEEEIKSFNDKLSSSEEDLDIKLVTLEK--NCNIAMSRLQSLVTENSD------LRSKNENFKKEKAA 1086
Cdd:COG5644  522 lGMKFMRDASNRQMAASKISVADLVKVENGDDIDVGELDEvgGDAIYANAGRREVFPVVEqrrklaPRKRKEDFVTPSTS 601
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1087 LNNQL------KNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAelKETRIQlteyKSNYQKIKEEYSNFQRE 1160
Cdd:COG5644  602 LEKSMdrilhgQKKRAEGAVVFEKPLEATENFNPWLDRKMRRIKRIKKKAY--RRIRRD----KRLKKKMPEEENTQENH 675
                        330       340
                 ....*....|....*....|....*.
gi 730092   1161 TKEQEQKKRNSlveslNDSKIKELEA 1186
Cdd:COG5644  676 LGSEKKRHGGV-----PDILLKEIEV 696
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
1243-1901 1.90e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 43.50  E-value: 1.90e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1243 EITRNLENEIEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDPSIPLDSilnepLDNCPDKESDI-NKLM 1321
Cdd:TIGR00606  323 DCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDG-----FERGPFSERQIkNFHT 397
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1322 LEVDYLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIyKLKFEASEERVKSLEDKLKTMplrDRTNLPVGDI 1401
Cdd:TIGR00606  398 LVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTI-ELKKEILEKKQEELKFVIKEL---QQLEGSSDRI 473
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1402 IKNRDSISKYEEEIRyyKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDR---LQKDLESTERQKELLSSTI 1478
Cdd:TIGR00606  474 LELDQELRKAERELS--KAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHhttTRTQMEMLTKDKMDKDEQI 551
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1479 KQQKQQFENCMDDLQG---NELRLREHIHAL----KQAEEDVKNMASIIEKLKTQNKQKEKliweREMERNDSDMQLQET 1551
Cdd:TIGR00606  552 RKIKSRHSDELTSLLGyfpNKKQLEDWLHSKskeiNQTRDRLAKLNKELASLEQNKNHINN----ELESKEEQLSSYEDK 627
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1552 LLELKRVQDvkkiLSDDLAHLKERLS-AVEDR----------SQYTDEINRLKEELNCSLKAETNLKKEFATLKYKLETS 1620
Cdd:TIGR00606  628 LFDVCGSQD----EESDLERLKEEIEkSSKQRamlagatavySQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSK 703
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1621 T-------NDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECeslkgkivsltkikQELESDLNQ 1693
Cdd:TIGR00606  704 LrlapdklKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDI--------------QRLKNDIEE 769
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1694 KTDALQISNAALSSSTQKNKEITekikyLEETLQLQMEQNSRN-GELVKTLQA-----SCNGYKDKFDDEKQKNIDLYEE 1767
Cdd:TIGR00606  770 QETLLGTIMPEEESAKVCLTDVT-----IMERFQMELKDVERKiAQQAAKLQGsdldrTVQQVNQEKQEKQHELDTVVSK 844
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1768 NQTLQKLNTDLQLQLKNLHERLSDTteknawlsKIHELENMVSLETDLKYEEMKKNKSLEraVEELQTKNSQQtdviela 1847
Cdd:TIGR00606  845 IELNRKLIQDQQEQIQHLKSKTNEL--------KSEKLQIGTNLQRRQQFEEQLVELSTE--VQSLIREIKDA------- 907
                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|....
gi 730092     1848 nKNRSEFEEATLKYEAQisDLEKYISQQELEMKKSirdnssyRDKVQEMAQEIE 1901
Cdd:TIGR00606  908 -KEQDSPLETFLEKDQQ--EKEELISSKETSNKKA-------QDKVNDIKEKVK 951
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
890-1186 2.41e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 42.80  E-value: 2.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      890 KNQKTVNELENT-------QDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQ 962
Cdd:pfam17380  279 QHQKAVSERQQQekfekmeQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEER 358
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      963 GLQ-ETIREREAT--------LEKLH---SKNNELIKQisDLncdisKEQSSQSLIKESKLKLENEIKRLKDVINSKEEE 1030
Cdd:pfam17380  359 KRElERIRQEEIAmeisrmreLERLQmerQQKNERVRQ--EL-----EAARKVKILEEERQRKIQQQKVEMEQIRAEQEE 431
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1031 IKSFNDKLSSSEEDLDIKLVTLEKncniaMSRLQSLvtenSDLRSKNENFKKEKAALNNQLKNK-----------ESELL 1099
Cdd:pfam17380  432 ARQREVRRLEEERAREMERVRLEE-----QERQQQV----ERLRQQEEERKRKKLELEKEKRDRkraeeqrrkilEKELE 502
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1100 KMKEKI---DNHKKELATFSKQRDDAVSEHG--KITAELKETRIQLTEYKSNYQKIK---EEYSNFqrETKEQEQKKRNS 1171
Cdd:pfam17380  503 ERKQAMieeERKRKLLEKEMEERQKAIYEEErrREAEEERRKQQEMEERRRIQEQMRkatEERSRL--EAMEREREMMRQ 580
                          330
                   ....*....|....*
gi 730092     1172 LVESlnDSKIKELEA 1186
Cdd:pfam17380  581 IVES--EKARAEYEA 593
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
1232-1744 2.53e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 42.74  E-value: 2.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1232 KKYYDLQLAFTEITRNLENEIEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDPSIPLDSILNEPLDNCP 1311
Cdd:PRK03918  231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELR 310
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1312 DKESDINKLMLEVDYLKRQLDietrahydaenAISALHSKFRKIQGESSLSSSDIYKLKFEASE-ERVKSLEDKLKTMPL 1390
Cdd:PRK03918  311 EIEKRLSRLEEEINGIEERIK-----------ELEEKEERLEELKKKLKELEKRLEELEERHELyEEAKAKKEELERLKK 379
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1391 RdRTNLPVGDIIKNRDSISKYEEEIRyykLENYKLQEILNESNGKLSQLTL---DLRQSKSKEALLSEQLDRlqkdlest 1467
Cdd:PRK03918  380 R-LTGLTPEKLEKELEELEKAKEEIE---EEISKITARIGELKKEIKELKKaieELKKAKGKCPVCGRELTE-------- 447
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1468 ERQKELLSSTIKqqkqqfencmdDLQGNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQ 1547
Cdd:PRK03918  448 EHRKELLEEYTA-----------ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYN 516
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1548 LQEtlleLKRVQDVKKILSDDLAHLKERLSAVEDRSQYTDEINRLKEELNCSLKaetNLKKEFATLKYKLETSTNDSEAK 1627
Cdd:PRK03918  517 LEE----LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD---ELEEELAELLKELEELGFESVEE 589
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1628 ISDLLKQLD-HYTKVVEMLNNEKD------AISLAEKELYQKYEALN---TECESLKGKIVSLTKIKQELE-SDLNQKTD 1696
Cdd:PRK03918  590 LEERLKELEpFYNEYLELKDAEKElereekELKKLEEELDKAFEELAeteKRLEELRKELEELEKKYSEEEyEELREEYL 669
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*...
gi 730092    1697 ALQISNAALSSSTQKNKEITEKIKYLEETLQLQMEQNSRNGELVKTLQ 1744
Cdd:PRK03918  670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLE 717
PLN03229 PLN03229
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
897-1204 3.21e-03

acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional


Pssm-ID: 178768 [Multi-domain]  Cd Length: 762  Bit Score: 42.53  E-value: 3.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     897 ELEN-TQDLLNQEKENLRKNESLLNRVktsSETLQKQFDDLVSEKDEisreklevAQNLEEahqKIQGLQETIREREATL 975
Cdd:PLN03229  437 EVEKlKEQILKAKESSSKPSELALNEM---IEKLKKEIDLEYTEAVI--------AMGLQE---RLENLREEFSKANSQD 502
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     976 EKLHSKNNELIKQISD-LNCDISKEQSSQSLikESKLKLENEIKRLKDVI--NSKEEEIKS-FNDKLSSSEEDLDIKLVT 1051
Cdd:PLN03229  503 QLMHPVLMEKIEKLKDeFNKRLSRAPNYLSL--KYKLDMLNEFSRAKALSekKSKAEKLKAeINKKFKEVMDRPEIKEKM 580
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1052 LEKNCNIAMSRLQSLVTENSDLRSKNENFKKE-KAALNNQLKNKESELLKMKekidnhKKELATFSKQRDDAVSE----- 1125
Cdd:PLN03229  581 EALKAEVASSGASSGDELDDDLKEKVEKMKKEiELELAGVLKSMGLEVIGVT------KKNKDTAEQTPPPNLQEkiesl 654
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1126 HGKITAELkETRIQLTEYKSNYQKIKEEY----SNFQRETKEQ----EQKKRNSLVESLNDSKIKELEARLSQEISLNQY 1197
Cdd:PLN03229  655 NEEINKKI-ERVIRSSDLKSKIELLKLEVakasKTPDVTEKEKiealEQQIKQKIAEALNSSELKEKFEELEAELAAARE 733

                  ....*..
gi 730092    1198 LNKRISG 1204
Cdd:PLN03229  734 TAAESNG 740
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1084-1177 3.27e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 42.02  E-value: 3.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1084 KAALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQLTEYKsnyQKIKEEYSNFQREtKE 1163
Cdd:COG4942   33 AAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLR---KQIADLNARLNAL-EV 108
                         90
                 ....*....|....
gi 730092   1164 QEQKKRNSLVESLN 1177
Cdd:COG4942  109 QEREQRRRLAEQLA 122
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
1419-1789 3.32e-03

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 42.50  E-value: 3.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1419 KLENykLQEILNESNGKLSQL-----TLDLRQSKSKEAL------LSEQ---LDRLQKDLESTERQKELLSSTIKQQKQQ 1484
Cdd:pfam10174  402 KIEN--LQEQLRDKDKQLAGLkervkSLQTDSSNTDTALttleeaLSEKeriIERLKEQREREDRERLEELESLKKENKD 479
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1485 FENCMDDLQGNelrLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLlELKRVQDVKKI 1564
Cdd:pfam10174  480 LKEKVSALQPE---LTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAH-NAEEAVRTNPE 555
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1565 LSDDLAHLKErlsavedrsqytdEINRLKEElncSLKAETNLKKEFATLKyKLETSTNDSEAKISDL----LKQLDHYTK 1640
Cdd:pfam10174  556 INDRIRLLEQ-------------EVARYKEE---SGKAQAEVERLLGILR-EVENEKNDKDKKIAELesltLRQMKEQNK 618
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1641 VV---EMLNNEKDAISLAEKELYQKYEALNTECES---LKGKIVSLTKIKQELESdLNQKTDALQISNAalSSSTQKNKE 1714
Cdd:pfam10174  619 KVaniKHGQQEMKKKGAQLLEEARRREDNLADNSQqlqLEELMGALEKTRQELDA-TKARLSSTQQSLA--EKDGHLTNL 695
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 730092     1715 ITEKIKYLEETLQLQMEqnsrngelvkTLQASCNgykdkfddEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERL 1789
Cdd:pfam10174  696 RAERRKQLEEILEMKQE----------ALLAAIS--------EKDANIALLELSSSKKKKTQEEVMALKREKDRL 752
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
866-1055 3.42e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 41.54  E-value: 3.42e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       866 FNEQInKLKNDLQEMESKKKFLEEKNQKTVN---ELENTQDLLNQEKENLRKNESLLNRVKtssETLQKQFDDLVSEKDE 942
Cdd:smart00787  115 MDKQF-QLVKTFARLEAKKMWYEWRMKLLEGlkeGLDENLEGLKEDYKLLMKELELLNSIK---PKLRDRKDALEEELRQ 190
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       943 ISREKLEVAQNLEEAHQKiqgLQETIREREATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKD 1022
Cdd:smart00787  191 LKQLEDELEDCDPTELDR---AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRG 267
                           170       180       190
                    ....*....|....*....|....*....|...
gi 730092      1023 VINSKEEEIKsfnDKLSSSEEDLDIKLVTLEKN 1055
Cdd:smart00787  268 FTFKEIEKLK---EQLKLLQSLTGWKITKLSGN 297
PRK04778 PRK04778
septation ring formation regulator EzrA; Provisional
863-1044 3.55e-03

septation ring formation regulator EzrA; Provisional


Pssm-ID: 179877 [Multi-domain]  Cd Length: 569  Bit Score: 42.13  E-value: 3.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     863 TKKFNEQINKLKNDLQEMESKKKFLEEKN-QKTVNELENTQDLLNQEKENLR------KNESLLNRVKTSSETLQKQFD- 934
Cdd:PRK04778  225 QTELPDQLQELKAGYRELVEEGYHLDHLDiEKEIQDLKEQIDENLALLEELDldeaeeKNEEIQERIDQLYDILEREVKa 304
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     935 --DLVSEKDEISREKLEVAQNLEEAHQKIQGLQE--TIRERE-ATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKEs 1009
Cdd:PRK04778  305 rkYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQsyTLNESElESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQE- 383
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 730092    1010 klKLENEIKRLKDVinskEEEIKSFNDKLSSSEED 1044
Cdd:PRK04778  384 --ELEEILKQLEEI----EKEQEKLSEMLQGLRKD 412
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
1438-1695 3.73e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 42.35  E-value: 3.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1438 QLTLDLRQSKS-KEALLSEQLDRLQKDLESTERQKELLsstikQQKQQFENCMDDLQGNELRLREHIHALKQaeedvkNM 1516
Cdd:PRK10929   27 QITQELEQAKAaKTPAQAEIVEALQSALNWLEERKGSL-----ERAKQYQQVIDNFPKLSAELRQQLNNERD------EP 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1517 ASIIEKLKTQNKQKEKLiweremerndsdmQLQETLLELKRV----QDVKKILSDDLAHLKERLSavEDRSQYTDEINRL 1592
Cdd:PRK10929   96 RSVPPNMSTDALEQEIL-------------QVSSQLLEKSRQaqqeQDRAREISDSLSQLPQQQT--EARRQLNEIERRL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1593 K----------EELNCSLKAETNLKK------EFATLkykleTSTNDSE-AKI-SDLLK----QLDHYTKVVE-MLNNEK 1649
Cdd:PRK10929  161 QtlgtpntplaQAQLTALQAESAALKalvdelELAQL-----SANNRQElARLrSELAKkrsqQLDAYLQALRnQLNSQR 235
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 730092    1650 DaiSLAEKELYqKYEALNTECESLKGKIVSLTKIKQELESDLNQKT 1695
Cdd:PRK10929  236 Q--REAERALE-STELLAEQSGDLPKSIVAQFKINRELSQALNQQA 278
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
656-683 3.76e-03

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 40.02  E-value: 3.76e-03
                         10        20
                 ....*....|....*....|....*...
gi 730092    656 SSRHREQQITLLNQLASTHPHFVRCIIP 683
Cdd:cd01363  143 FEIINESLNTLMNVLRATRPHFVRCISP 170
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
1372-1904 3.77e-03

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 42.12  E-value: 3.77e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1372 EASEERVKSLEDKLKTMPLRDRTNLPVGDIIKNRDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEA 1451
Cdd:pfam10174   40 ELKKERALRKEEAARISVLKEQYRVTQEENQHLQLTIQALQDELRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEENFR 119
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1452 LLSEQLDRLQKDLESTERQKELLSSTIKQQKQ----QFENC-----MDDLQGNELRLREHIHALKQ----AEEDVKNMAS 1518
Cdd:pfam10174  120 RLQSEHERQAKELFLLRKTLEEMELRIETQKQtlgaRDESIkklleMLQSKGLPKKSGEEDWERTRriaeAEMQLGHLEV 199
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1519 IIEKLKTQNKQ-KEKLIWEREMERNDSDMQLQETLLELK-----RVQDVKKILSDDLAHLK-----------ERLSAVED 1581
Cdd:pfam10174  200 LLDQKEKENIHlREELHRRNQLQPDPAKTKALQTVIEMKdtkisSLERNIRDLEDEVQMLKtngllhtedreEEIKQMEV 279
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1582 RSQYTD----EINRLKEELNcslKAETnlkkEFATLKYKLETSTN---DSEAKIsDLLKQldhytkvvemlnnekdaiSL 1654
Cdd:pfam10174  280 YKSHSKfmknKIDQLKQELS---KKES----ELLALQTKLETLTNqnsDCKQHI-EVLKE------------------SL 333
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1655 AEKElyQKYEALNTECESLKGKIvsltkikQELESDLNQKTDALQisnaalsSSTQKNKEITEKIKYLEETLQLQMEQns 1734
Cdd:pfam10174  334 TAKE--QRAAILQTEVDALRLRL-------EEKESFLNKKTKQLQ-------DLTEEKSTLAGEIRDLKDMLDVKERK-- 395
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1735 rngelVKTLQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTTEKNAWLSKIHELENMVSLEtd 1814
Cdd:pfam10174  396 -----INVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLE-- 468
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1815 lKYEEMKK-NKSLERAVEELQT-KNSQQTDVIELANKNRSeFEEATLKYEAQISDLEKYISQ---------------QEL 1877
Cdd:pfam10174  469 -ELESLKKeNKDLKEKVSALQPeLTEKESSLIDLKEHASS-LASSGLKKDSKLKSLEIAVEQkkeecsklenqlkkaHNA 546
                          570       580
                   ....*....|....*....|....*..
gi 730092     1878 EMkkSIRDNSSYRDKVQEMAQEIEFWK 1904
Cdd:pfam10174  547 EE--AVRTNPEINDRIRLLEQEVARYK 571
PRK12705 PRK12705
hypothetical protein; Provisional
1074-1179 4.48e-03

hypothetical protein; Provisional


Pssm-ID: 237178 [Multi-domain]  Cd Length: 508  Bit Score: 41.62  E-value: 4.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1074 RSKNENFKKEK--AALNNQLKNKESELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAE-LKETRIQLTEYKSNYQKI 1150
Cdd:PRK12705   81 REEERLVQKEEqlDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEqARKLLLKLLDAELEEEKA 160
                          90       100
                  ....*....|....*....|....*....
gi 730092    1151 KEEYSNFQRETKEQEQKKRNSLVESLNDS 1179
Cdd:PRK12705  161 QRVKKIEEEADLEAERKAQNILAQAMQRI 189
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
1086-1795 4.80e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 41.93  E-value: 4.80e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1086 ALNNQLKNKESELLKMKEKIDNHKKELATfskqrddavsehgkitaelKETRIQLTEYKSNYQKIKEEYSNFQRETKEQE 1165
Cdd:TIGR04523   23 GYKNIANKQDTEEKQLEKKLKTIKNELKN-------------------KEKELKNLDKNLNKDEEKINNSNNKIKILEQQ 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1166 QKKRNSlVESLNDSKIKELEARLSQEISLNQYLNKRISGNSVETNISSTRRSTSYSDDPLDKEDIIKKYYDLqlafTEIT 1245
Cdd:TIGR04523   84 IKDLND-KLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKEL----EKLN 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1246 RNLENEIEEKKNLISRLRFTETRLASSSFEDQKIKAQMKKLKKLIQDMDPSIPLDSILNEPLDNCPDKESDINKlmlEVD 1325
Cdd:TIGR04523  159 NKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKD---NIE 235
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1326 YLKRQLDIETRAHYDAENAISALHSKFRKIQGESSLSSSDIyklkfEASEERVKSLEDKLKT--MPLRDRTNLPVGDIIK 1403
Cdd:TIGR04523  236 KKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL-----EQNNKKIKELEKQLNQlkSEISDLNNQKEQDWNK 310
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1404 N-RDSISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSSTIKQQK 1482
Cdd:TIGR04523  311 ElKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE 390
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1483 QQFencmddlqgNELRLRehihaLKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDsdmqLQETLLELKRVQDVK 1562
Cdd:TIGR04523  391 SQI---------NDLESK-----IQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIK----NNSEIKDLTNQDSVK 452
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1563 KILSDDLAHLKERLSavEDRSQYTDEINRLKEELNCSLKAETNLKKEFATLKYKletsTNDSEAKISDLLKQLDHYTKVV 1642
Cdd:TIGR04523  453 ELIIKNLDNTRESLE--TQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEE----KKELEEKVKDLTKKISSLKEKI 526
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1643 EMLNNEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKtdalqisnaalsSSTQKNKEITEKIKYL 1722
Cdd:TIGR04523  527 EKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQK------------SLKKKQEEKQELIDQK 594
                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 730092     1723 EETLQLQMEQNSRNGELVKTLqascngyKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERLSDTTEK 1795
Cdd:TIGR04523  595 EKEKKDLIKEIEEKEKKISSL-------EKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
HEC1 COG5185
Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, ...
891-1239 5.14e-03

Protein involved in chromosome segregation, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227512 [Multi-domain]  Cd Length: 622  Bit Score: 41.51  E-value: 5.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    891 NQKTVNELENTQDLLNQEKENLRKNESLLNRVKTSSETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIRE 970
Cdd:COG5185  206 IIKLDMCLQPLKTLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYE 285
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    971 REATLEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLdiklv 1050
Cdd:COG5185  286 KIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL----- 360
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1051 tleKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKEselLKMKEKIDNHKKELATFSKQRDDAVSEHGKIT 1130
Cdd:COG5185  361 ---RKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRK---LEAQGIFKSLEKTLRQYDSLIQNITRSRSQIG 434
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1131 AELKETRIQLTEYKSNY------QKIKEEYSNFQRETKEQ---EQKKRNSLVESlndskIKELEARLSQEISLNQYLNKR 1201
Cdd:COG5185  435 HNVNDSSLKINIEQLFPkgsginESIKKSILELNDEIQERiktEENKSITLEED-----IKNLKHDINELTQILEKLELE 509
                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 730092   1202 ISGNSVETNISSTRRSTSYSDDPLDKEDIIKKYYDLQL 1239
Cdd:COG5185  510 LSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNL 547
EzrA COG4477
Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome ...
864-1176 5.40e-03

Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 226883 [Multi-domain]  Cd Length: 570  Bit Score: 41.59  E-value: 5.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    864 KKFNEQINKLKNDLQEMESKKKFLEEKNqktvneLENTQDLLnqeKENLRKNESLLNRVktssetlqkqfddlvsekdei 943
Cdd:COG4477  225 TELPGQLQDLKAGYRDMKEEGYHLEHVN------IDSRLERL---KEQLVENSELLTQL--------------------- 274
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    944 sreklevaqNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISKeqssqslIKESKLKLENEIKRLKDV 1023
Cdd:COG4477  275 ---------ELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEK-------AKENNEHLKEEIERVKES 338
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1024 INSKEEE---IKSFNDKLSSSEEDLDIKLVTLEKNC---NIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESE 1097
Cdd:COG4477  339 YRLAETElgsVRKFEKELKELESVLDEILENIEAQEvaySELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEAREN 418
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1098 LLKMKEKIDNHKKEL---------ATFSKQRDDAVSEHGKITAELKETRIQLTEYKSNYQKIKEEYSNFQRETKEQEQKK 1168
Cdd:COG4477  419 LERLKSKLHEIKRYMeksnlpglpETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEVVENA 498

                 ....*...
gi 730092   1169 RnsLVESL 1176
Cdd:COG4477  499 V--LAEQL 504
CwlO1 COG3883
Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown];
898-1128 5.49e-03

Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 226400 [Multi-domain]  Cd Length: 265  Bit Score: 40.86  E-value: 5.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    898 LENTQDLLNQEKENLRKNESLLnrvktssETLQKQFDDLVSEKDEISREKLEVAQNLEEAHQKIQGLQETIREREATLEK 977
Cdd:COG3883   33 IQNQDSKLSELQKEKKNIQNEI-------ESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    978 ------------------LHSKN-NELIKQISDLNCDISKEQSSQSLIKESKLKLENeikrlkdvinsKEEEIKSFNDKL 1038
Cdd:COG3883  106 raramqvngtatsyidviLNSKSfSDLISRVTAISVIVDADKKILEQQKEDKKSLEE-----------KQAALEDKLETL 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1039 SSSEEDLDIKLVTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNHKKELATFSKQ 1118
Cdd:COG3883  175 VALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALEEQKALAEAAAAEAAKQEAAAKAAAQEQAALQAAATAA 254
                        250
                 ....*....|
gi 730092   1119 RDDAVSEHGK 1128
Cdd:COG3883  255 QPSAVTESAS 264
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
1651-1897 5.53e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 227278 [Multi-domain]  Cd Length: 420  Bit Score: 41.25  E-value: 5.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1651 AISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQISNAALSSSTQKNKEITEKIKYLEETL-QLQ 1729
Cdd:COG4942   28 AAAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLnALE 107
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1730 MEQNSRNGELVKTLQAscngYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLHERlsdtteknawlskIHELENMV 1809
Cdd:COG4942  108 VQEREQRRRLAEQLAA----LQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAER-------------IDALKATL 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1810 SLETDLKyeemkknKSLERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYIS---QQELEMKKSIRDN 1886
Cdd:COG4942  171 KQLAAVR-------AEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEelrANESRLKNEIASA 243
                        250
                 ....*....|.
gi 730092   1887 SSYRDKVQEMA 1897
Cdd:COG4942  244 EAAAAKAREAA 254
MUTSd smart00533
DNA-binding domain of DNA mismatch repair MUTS family;
889-1112 5.61e-03

DNA-binding domain of DNA mismatch repair MUTS family;


Pssm-ID: 214710 [Multi-domain]  Cd Length: 308  Bit Score: 41.13  E-value: 5.61e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       889 EKNQKTVNELENTQDLLNQEKENLRKN---ESLLNRVKTSSETLQkqfdDLVSEKDEISREKlEVAQNLEEAHQKIQGLQ 965
Cdd:smart00533   35 NERLDAVEELVENPELRQKLRQLLKRIpdlERLLSRIERGRASPR----DLLRLYDSLEGLK-EIRQLLESLDGPLLGLL 109
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092       966 etireREATLEKLHSKNNELIK-QISDLNCDISKEqssqSLIKESklkLENEIKRLKDVINSKEEEIKSFNDKLsssEED 1044
Cdd:smart00533  110 -----LKVILEPLLELLELLLElLNDDDPLEVNDG----GLIKDG---FDPELDELREKLEELEEELEELLKKE---REE 174
                           170       180       190       200       210       220       230
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 730092      1045 LDIKLVTLEKNCN----IAMSRLQ-SLVTENSDLRSKNENFKKEKaalNNQLKNKESELLKMKEKIDNHKKEL 1112
Cdd:smart00533  175 LGIDSLKLGYNKVhgyyIEVTKSEaKKVPKDFIRRSSLKNTERFT---TPELKELENELLEAKEEIERLEKEI 244
HMMR_N pfam15905
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ...
855-1104 5.83e-03

Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.


Pssm-ID: 435008 [Multi-domain]  Cd Length: 329  Bit Score: 40.96  E-value: 5.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      855 TSSNDMTRTKKFNEQINKLKND-------LQEMESKKKFLEEKNQKTVNE----LENTQDLLNQEKENLRKNESLlnRVK 923
Cdd:pfam15905   67 KDLKESKDQKELEKEIRALVQErgeqdkrLQALEEELEKVEAKLNAAVREktslSASVASLEKQLLELTRVNELL--KAK 144
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      924 TSSETLQKQFDDLVSEKDEIsREKLEVAQNLEEAHQ-----KIQGLQETIREREATLEKLHSKNNELIKQISDLNCDISK 998
Cdd:pfam15905  145 FSEDGTQKKMSSLSMELMKL-RNKLEAKMKEVMAKQegmegKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEK 223
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      999 ---EQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSE-------EDLDIKLVTLEkncniamSRLQSLVT 1068
Cdd:pfam15905  224 lleYITELSCVSEQVEKYKLDIAQLEELLKEKNDEIESLKQSLEEKEqelskqiKDLNEKCKLLE-------SEKEELLR 296
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 730092     1069 ENsdlRSKNENFKKEKAALNNQLKNKESELLKMKEK 1104
Cdd:pfam15905  297 EY---EEKEQTLNAELEELKEKLTLEEQEHQKLQQK 329
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
1412-1631 6.02e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 429718 [Multi-domain]  Cd Length: 488  Bit Score: 41.41  E-value: 6.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1412 EEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQKDLESTERQKELLSstikqqKQQFEncmdd 1491
Cdd:pfam07888   58 EKEKERYKRDREQWERQRRELESRVAELKEELRQSREKVEELEEKYKELSRSGEELAEEKDALL------AQRAE----- 126
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1492 lqgNELRLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWEREMERNDSDMQLQETLLELKRvqdvkkiLSDDLAH 1571
Cdd:pfam07888  127 ---SEARIRELEEDIKTLTQRVLERETELERMKERVKKAGAQRKEEEAERKQLQAKLQQTEEELRS-------LSKEFQE 196
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 730092     1572 LKERLSAVEDRS-QYTDEINRLKEELNCSLKAETN---LKKEFATLKYKLETSTNDSEAKISDL 1631
Cdd:pfam07888  197 LRNSLAQRDTQVlQLQDTITTLTQKLTTAHRKEAEneaLLEELRSLQERLNASERKVEGLGEEL 260
PRK11281 PRK11281
mechanosensitive channel MscK;
1378-1730 6.18e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 41.44  E-value: 6.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1378 VKSLEDKLKTMPLRDRTNLpvgDIIKNRDSISKYEEEIRYYK--LENYK--LQEILNESNGKLSqltldLRQSKSKEALL 1453
Cdd:PRK11281   62 QQDLEQTLALLDKIDRQKE---ETEQLKQQLAQAPAKLRQAQaeLEALKddNDEETRETLSTLS-----LRQLESRLAQT 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1454 SEQLDRLQKDLEST-----------ER-QKELlsSTIKQQKQQFENCMDDLQGNELRLREHIHALKQAEEDVKNMASIIE 1521
Cdd:PRK11281  134 LDQLQNAQNDLAEYnsqlvslqtqpERaQAAL--YANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQ 211
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1522 KLKTQN---------KQKEKLI-WEREMERNDSDMQ----------LQETLLELKRVQDVKKILSDDLahLKERLSAVED 1581
Cdd:PRK11281  212 RKSLEGntqlqdllqKQRDYLTaRIQRLEHQLQLLQeainskrltlSEKTVQEAQSQDEAARIQANPL--VAQELEINLQ 289
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1582 RSQY----TDEINRL-------KEELNCSLKAETNLKKEFATLK---------YK----LETSTNDSE--AKISDL-LKQ 1634
Cdd:PRK11281  290 LSQRllkaTEKLNTLtqqnlrvKNWLDRLTQSERNIKEQISVLKgslllsrilYQqqqaLPSADLIEGlaDRIADLrLEQ 369
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1635 LDhytkvvemLNNEKDAIS-----LAEKELYQKYEALNTECESLKgkivSLTKIKQELESDLNQktdalQISNA-ALSSS 1708
Cdd:PRK11281  370 FE--------INQQRDALFqpdayIDKLEAGHKSEVTDEVRDALL----QLLDERRELLDQLNK-----QLNNQlNLAIN 432
                         410       420
                  ....*....|....*....|...
gi 730092    1709 TQKN-KEITEKIKYLEETLQLQM 1730
Cdd:PRK11281  433 LQLNqQQLLSVSDSLQSTLTQQI 455
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
975-1135 6.69e-03

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 40.43  E-value: 6.69e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    975 LEKLHSKNNELIKQISDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVINSKEEEIKSFNDKLSSSEEDLDI-----KL 1049
Cdd:COG1579   12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAvkderEL 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1050 VTLEKNCNIAMSRLQSLVTENSDLRSKNENFKKEKAALNNQLKNKESELLKMKEKIDNhkkELATFSKQRDDAVSEHGKI 1129
Cdd:COG1579   92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEE---EVAEIREEGQELSSKREEL 168

                 ....*.
gi 730092   1130 TAELKE 1135
Cdd:COG1579  169 KEKLDP 174
Taxilin pfam09728
Myosin-like coiled-coil protein; Taxilin contains an extraordinarily long coiled-coil domain ...
865-1140 7.69e-03

Myosin-like coiled-coil protein; Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca2+-dependent exocytosis in neuroendocrine cells. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localizes to the nucleus in osteoblasts and dimerizes with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription.


Pssm-ID: 430780 [Multi-domain]  Cd Length: 302  Bit Score: 40.32  E-value: 7.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      865 KFNEQINKLKNDLQEMESKKKFLEEK----------NQKTVNELENTQDLLNQEKENLRkneSLLNRVKTSSETLQKQFD 934
Cdd:pfam09728    1 KAARELMQLLNKLDTPEEKLAALCKKyaelleemkrLQKDLKKLKKKQDQLQKEKDQLQ---SELSKAILAKSKLEKLCR 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      935 DLVSEKDEISREKLEVAQNLEEAHQKI-QGLQETIREREATLEKLHSKNNELIKQISDLncdiskEQSSQSLIKESKLKl 1013
Cdd:pfam09728   78 ELQKQNKKLKEESKKLAKEEEEKRKELsEKFQATLKDIQDKMEEKSEPNNKLREENEEL------REKLKSLIEQYELR- 150
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1014 ENEIKRLkdvINSKEEEIKSFNDKLSSSEEDLDIKLVTLE-KNCNIAMSRLQSLVTENSDLRSK---------------- 1076
Cdd:pfam09728  151 EEHFEKL---LKTKELEVQLAEAKLQQATEEEEKKAQEKEvAKARELKAQVQTLSETEKELREQlnlyvekfeefqdtln 227
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 730092     1077 --NE---NFKKEKAALNNQLKNKESELLKMKEKIDNHKKELAtfskqrdDAVSEHGKITAELKETRIQL 1140
Cdd:pfam09728  228 ksNEvftTFKKEMEKMSKKIKKLEKENLTWKRKWEKSNKALL-------EMAEERQKLKEELEKLQKKL 289
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
1371-1575 8.67e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 225288 [Multi-domain]  Cd Length: 652  Bit Score: 40.84  E-value: 8.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1371 FEASEERVKSLEDKLKTMPLRDRTNLPVGDIIKN---RDSISKYEEEiryyklenyklqEILNESNGKLSQLTLDLRQSK 1447
Cdd:COG2433  354 YLAYKPKLEKVERKLPELGIWKDVERIKALVIRGyplAEALSKVKEE------------ERPREKEGTEEEERREITVYE 421
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092   1448 SKEALLSEQLDRLqkdlestERQKELLSSTIKQQKQQFENCMDDLQgnELRLREHIHALKQAEedVKNMASIIEKLKT-- 1525
Cdd:COG2433  422 KRIKKLEETVERL-------EEENSELKRELEELKREIEKLESELE--RFRREVRDKVRKDRE--IRARDRRIERLEKel 490
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 730092   1526 QNKQKEKLIWEREMERNDsDMQLQETLLELKRVQDVKKILSDDLAHLKER 1575
Cdd:COG2433  491 EEKKKRVEELERKLAELR-KMRKLELSGKGTPVKVVEKLTLEAIEEAEEE 539
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
1408-1901 8.75e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 41.19  E-value: 8.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1408 ISKYEEEIRYYKLENYKLQEILNESNGKLSQLTLDLRQSKSKEALLSEQLDRLQ----------------KDLESTERQK 1471
Cdd:TIGR00606  202 VQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKeiehnlskimkldneiKALKSRKKQM 281
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1472 ELLSSTIKQQKQQFENCMDDlqgnELRLREHIHAlKQAEEDVKNMASIIEKLKTQNKQKEKLIWER-EMERNDSDMQLQ- 1549
Cdd:TIGR00606  282 EKDNSELELKMEKVFQGTDE----QLNDLYHNHQ-RTVREKERELVDCQRELEKLNKERRLLNQEKtELLVEQGRLQLQa 356
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1550 -----------------ETLLEL---KRVQDVKKILSDDLAHLKERLSavEDRSQYTDEINRLKEELNCSLKAETNLKKE 1609
Cdd:TIGR00606  357 drhqehirardsliqslATRLELdgfERGPFSERQIKNFHTLVIERQE--DEAKTAAQLCADLQSKERLKQEQADEIRDE 434
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1610 FATLKYKLETSTNDSEAKISDL---LKQLDHYTKVVEMLNNEKDAISLAEKELYQKYEALNTECesLKGKIVSLtkikQE 1686
Cdd:TIGR00606  435 KKGLGRTIELKKEILEKKQEELkfvIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTET--LKKEVKSL----QN 508
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1687 LESDLNQKTDALQISNAALSSSTQKNKEiTEKIKYLEETLQLQMEQNSRNGELVKTLQASCNGYKDKFDD---EKQKNID 1763
Cdd:TIGR00606  509 EKADLDRKLRKLDQEMEQLNHHTTTRTQ-MEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDwlhSKSKEIN 587
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1764 LYEENqtLQKLNTDLQLQLKNLHERLSDTTEKNAWLS----KIHELENMVSLETDLK--YEEMKKNKS-----------L 1826
Cdd:TIGR00606  588 QTRDR--LAKLNKELASLEQNKNHINNELESKEEQLSsyedKLFDVCGSQDEESDLErlKEEIEKSSKqramlagatavY 665
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 730092     1827 ERAVEELQTKNSQQTDVIELANKNRSEFEEATLKYEAQISDLEKYISQQELEMKKSIRDNSSYRDKVQEMAQEIE 1901
Cdd:TIGR00606  666 SQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIID 740
PRK01156 PRK01156
chromosome segregation protein; Provisional
1096-1699 8.85e-03

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 41.04  E-value: 8.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1096 SELLKMKEKIDNHKKELATFSKQRDDAVSEHGKITAELKETRIQlteyksnYQKIKEEYSNFQRETKEQeqkkrNSLVES 1175
Cdd:PRK01156  183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIE-------YNNAMDDYNNLKSALNEL-----SSLEDM 250
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1176 LN--DSKIKELEARLSQEISLNQYLNKrisgnsvetniSSTRRSTSYSDDPLDKEDIIKKYYdlqlafteitrNLENEIE 1253
Cdd:PRK01156  251 KNryESEIKTAESDLSMELEKNNYYKE-----------LEERHMKIINDPVYKNRNYINDYF-----------KYKNDIE 308
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1254 EKKNLISRLRFtetrlasssfEDQKIKAQMKKLKKLIQDMDPSIPLDSI---LNEPLDNCPDKESDINKLMLEVDYLKRQ 1330
Cdd:PRK01156  309 NKKQILSNIDA----------EINKYHAIIKKLSVLQKDYNDYIKKKSRyddLNNQILELEGYEMDYNSYLKSIESLKKK 378
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1331 LDietrahydaenaisalhsKFRKIQGESSLSSSDIYKLKFEASEERVKSLEDKLKTMplrDRTNLPVGDIIKNRDSISK 1410
Cdd:PRK01156  379 IE------------------EYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKL---QDISSKVSSLNQRIRALRE 437
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1411 YEEEIRyyklenyKLQEILNeSNGKLSQLTLDLRQSKSKEAL--LSEQLDRLQKDLESTERQKELLSSTIKQQKQQfenc 1488
Cdd:PRK01156  438 NLDELS-------RNMEMLN-GQSVCPVCGTTLGEEKSNHIInhYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKR---- 505
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1489 MDDLQGNEL-RLREHIHALKQAEEDVKNMASIIEKLKTQNKQKEKLIWE-REMERNDSDMQLQETLLEL----------- 1555
Cdd:PRK01156  506 KEYLESEEInKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRyKSLKLEDLDSKRTSWLNALavislidietn 585
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092    1556 -KRVQDVKKILSDDLAHLKERLSAVEDRSQYTDE-INRLKEELNcSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLK 1633
Cdd:PRK01156  586 rSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKsIREIENEAN-NLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDS 664
                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 730092    1634 QLDHYTKVVEMLNNEKDAISLAEKELyqkyEALNTECESLKGKIVSLTKIKQELESDLNQKTDALQ 1699
Cdd:PRK01156  665 IIPDLKEITSRINDIEDNLKKSRKAL----DDAKANRARLESTIEILRTRINELSDRINDINETLE 726
PRK12595 PRK12595
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
928-1024 9.58e-03

bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed


Pssm-ID: 183614 [Multi-domain]  Cd Length: 360  Bit Score: 40.34  E-value: 9.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     928 TLQKQFDDLVSEKDEISREKLE-------VAQNLEEAHQKiQGLQ--ETIREREaTLEKLHSKNN---------ELIKQI 989
Cdd:PRK12595    1 MMNEELEQLRKEIDEINLQLLEllskrgeLVQEIGEEKTK-QGTKryDPVRERE-MLDMIAENNEgpfedstiqHLFKEI 78
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 730092     990 SDLNCDISKEQSSQSLIKESKLKLENEIKRLKDVI 1024
Cdd:PRK12595   79 FKASLELQEDDNRKALLVSRKKKPEDTIVDVKGEV 113
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
864-1097 9.70e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 40.88  E-value: 9.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      864 KKFNEQINKLK-----NDLQEMESKKKFLEEKNQKTVNELENTQDLLNQEKENLRKNESllnrvktssetlQKQFDDLVS 938
Cdd:pfam17380  359 KRELERIRQEEiameiSRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQ------------QKVEMEQIR 426
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092      939 EKDEISREKlEVAQNLEEAHQKIQGLQETIREREATLEKLHSKNNELIKQisdlNCDISKEQSSQSLIKESKLK-LENEI 1017
Cdd:pfam17380  427 AEQEEARQR-EVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRK----KLELEKEKRDRKRAEEQRRKiLEKEL 501
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730092     1018 KRLKDVINSKEEEI----KSFNDKLSSSEEDLDIKLVTLEKNCNIAMS---RLQSLVTENSDLRSKNENFKKEKAALnNQ 1090
Cdd:pfam17380  502 EERKQAMIEEERKRklleKEMEERQKAIYEEERRREAEEERRKQQEMEerrRIQEQMRKATEERSRLEAMEREREMM-RQ 580

                   ....*..
gi 730092     1091 LKNKESE 1097
Cdd:pfam17380  581 IVESEKA 587
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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