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Conserved domains on  [gi|74184767|dbj|BAE27983|]
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unnamed protein product [Mus musculus]

Protein Classification

ApoB100_C domain-containing protein( domain architecture ID 10575826)

ApoB100_C domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ApoB100_C pfam12491
Apolipoprotein B100 C terminal; This domain family is found in eukaryotes, and is ...
 1424-1480 3.99e-27

Apolipoprotein B100 C terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.


:

Pssm-ID: 463606  Cd Length: 57  Bit Score: 105.19  E-value: 3.99e-27
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 74184767   1424 QFHSNLQDFSDQLSSYYEKFVGESTRLIDLSIQNYHVFLRYITELLRKLQVATANNV 1480
Cdd:pfam12491    1 QFKYKLQEFSDQLSDYYEKFIAESKRLIDLSIQNYHMFLRYITELLKKLQQATANSI 57
 
Name Accession Description Interval E-value
ApoB100_C pfam12491
Apolipoprotein B100 C terminal; This domain family is found in eukaryotes, and is ...
 1424-1480 3.99e-27

Apolipoprotein B100 C terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.


Pssm-ID: 463606  Cd Length: 57  Bit Score: 105.19  E-value: 3.99e-27
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 74184767   1424 QFHSNLQDFSDQLSSYYEKFVGESTRLIDLSIQNYHVFLRYITELLRKLQVATANNV 1480
Cdd:pfam12491    1 QFKYKLQEFSDQLSDYYEKFIAESKRLIDLSIQNYHMFLRYITELLKKLQQATANSI 57
 
Name Accession Description Interval E-value
ApoB100_C pfam12491
Apolipoprotein B100 C terminal; This domain family is found in eukaryotes, and is ...
 1424-1480 3.99e-27

Apolipoprotein B100 C terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.


Pssm-ID: 463606  Cd Length: 57  Bit Score: 105.19  E-value: 3.99e-27
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 74184767   1424 QFHSNLQDFSDQLSSYYEKFVGESTRLIDLSIQNYHVFLRYITELLRKLQVATANNV 1480
Cdd:pfam12491    1 QFKYKLQEFSDQLSDYYEKFIAESKRLIDLSIQNYHMFLRYITELLKKLQQATANSI 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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