|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
226-539 |
1.26e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 226 SQDLDDHQHELSALQ-NAHQQKLteisRRHREELSDYEERIEELENLLQQGGSGVTVTDhSKVYEMQNTIQILQMEKVES 304
Cdd:TIGR02168 219 KAELRELELALLVLRlEELREEL----EELQEELKEAEEELEELTAELQELEEKLEELR-LEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 305 TKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEEtilphsssv 384
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE--------- 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 385 AEVLRLQQALTDAENEIMRLRSlnqDISLAEDNQKLqmcvqtLEKEKSLLSQEKEELQVSLSKLSSEYEVIKSTASRdld 464
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLRS---KVAQLELQIAS------LNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--- 432
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 74201694 465 lfSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSvIKKLKEELAGE 539
Cdd:TIGR02168 433 --AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGF 504
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
213-503 |
4.43e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 4.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 213 KLQNIIKELKQN-RSQDLDDHQHELSALQNAHQQKLTEIsRRHREELSDYEERIEELENLLQQGGSGVTvtdhskvyEMQ 291
Cdd:COG1196 217 ELKEELKELEAElLLLKLRELEAELEELEAELEELEAEL-EELEAELAELEAELEELRLELEELELELE--------EAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 292 NTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAA 371
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 372 VEEETILphSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKlqmcvQTLEKEKSLLSQEKEELQVSLSKLSSE 451
Cdd:COG1196 368 LEAEAEL--AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL-----ERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 74201694 452 YEVIKSTASRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQ 503
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
314-587 |
3.10e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 3.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 314 KIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQ--SALRQSDAAVEEETILPHSSSVAEVLRLQ 391
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELelEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 392 QALTDAENEIMRLRSLNQDISLAEDNQK-LQMCVQTLEKEKSLLSQEKEELQVSLSKLSSEYEVIKSTASRDLDLFSQVH 470
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEeLEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 471 DLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDK 550
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250 260 270
....*....|....*....|....*....|....*..
gi 74201694 551 MNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVED 587
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
223-588 |
9.53e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 9.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 223 QNRSQDLDDHQHELSALQNAHQQKLTEISRRhREELSDYEERIEELENLLQQGGSGVTVTDHSKVyEMQNTIQILQMEKV 302
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAEL-RKELEELEEELEQLRKELEELSRQISALRKDLA-RLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 303 ESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEETILphSS 382
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL--ES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 383 SVAEVLRLQQALTDAENEImrlRSLNQDISLAEDNQ-KLQMCVQTLEKEKSLLSQEKEELQVSLSKLSSEYEvIKSTASR 461
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQI---EELSEDIESLAAEIeELEELIEELESELEALLNERASLEEALALLRSELE-ELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 462 DLDlfSQVHDLKHNLEAKEQELNQSIHENEILMAELEELdkqNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQ 541
Cdd:TIGR02168 905 ELE--SKRSELRRELEELREKLAQLELRLEGLEVRIDNL---QERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 74201694 542 RTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDL 588
Cdd:TIGR02168 980 KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
306-594 |
1.41e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 306 KQIEDLENKIKEIHKRLSSAEHDQEVWKKEQE-RLEVEKREMTEQCERLK-----LELSEAQQSALRQSDAAVEEETilp 379
Cdd:TIGR02169 184 ENIERLDLIIDEKRQQLERLRREREKAERYQAlLKEKREYEGYELLKEKEalerqKEAIERQLASLEEELEKLTEEI--- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 380 hSSSVAEVLRLQQALTDAENEIMRLRSlNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKEELQVSLSKLSSEYEVIKSTA 459
Cdd:TIGR02169 261 -SELEKRLEEIEQLLEELNKKIKDLGE-EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 460 SrdlDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGE 539
Cdd:TIGR02169 339 E---ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 74201694 540 KQRTHQLEDDKMniikELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSK 594
Cdd:TIGR02169 416 QRLSEELADLNA----AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
252-548 |
2.34e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 2.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 252 RRHREELSDYEERIEELENLLQQggsgvtvtdhskvyemqntiqiLQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEV 331
Cdd:COG1196 235 RELEAELEELEAELEELEAELEE----------------------LEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 332 WKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEEtilphsssvAEVLRLQQALTDAENEIMRLRSLNQDI 411
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE---------EELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 412 --SLAEDNQKLQMCVQTLEKEKSLLSQEKEELQVSLSKLSSEYEVIKSTASRDLDLFSQVHDLKHNLEAKEQELNQSIHE 489
Cdd:COG1196 364 eeALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 74201694 490 NEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDsvikKLKEELAGEKQRTHQLED 548
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA----ELLEELAEAAARLLLLLE 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
302-593 |
2.93e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 2.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 302 VESTKQIEDLENKIKEIHKRLSSAEhdqevwkKEQERLEVEKREMTEQCERLKLELSEA-QQSALRQSDAAVEEETILPH 380
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELE-------KALAELRKELEELEEELEQLRKELEELsRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 381 SSSVAevlRLQQALTDAENEIMRLRSlnqdiSLAEDNQKLQMCVQTLEKEKSLLSQEKEELQVSLSKLSSEYEVIKSTAS 460
Cdd:TIGR02168 746 EERIA---QLSKELTELEAEIEELEE-----RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 461 RDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEgdsvIKKLKEELAGEK 540
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE----RASLEEALALLR 893
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 74201694 541 QRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLS 593
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
289-509 |
2.94e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 289 EMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQS 368
Cdd:COG4942 38 ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 369 DAaveeetilphssSVAEVLRLQQALTDAENEIMRLRSLNQdiSLAEDNQKLQMCVQTLEKEKSLLSQEKEELQVSLSKL 448
Cdd:COG4942 118 RQ------------PPLALLLSPEDFLDAVRRLQYLKYLAP--ARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 74201694 449 SSEYEVIKSTASRDLDLFSQvhdLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATK 509
Cdd:COG4942 184 EEERAALEALKAERQKLLAR---LEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
251-588 |
4.30e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 4.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 251 SRRHREELSDYEERIEELENLLQqggsgvtvTDHSKVYEMQNTIQILQMEKVESTKQIEDLEN--------------KIK 316
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELS--------SLQSELRRIENRLDELSQELSDASRKIGEIEKeieqleqeeeklkeRLE 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 317 EIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEaqqsaLRQSDAAVEEETILPHSSSV-AEVLRLQQALT 395
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND-----LEARLSHSRIPEIQAELSKLeEEVSRIEARLR 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 396 DAENEIMRLRSLNQdiSLAEDNQKLQMCVQTLEKEKSLLSQEKEELQVSLSKLSSEyevIKSTASRDLDLFSQVHDLK-- 473
Cdd:TIGR02169 816 EIEQKLNRLTLEKE--YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE---LEELEAALRDLESRLGDLKke 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 474 --------HNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLsKQQSEGDSVIKKLKEELAGEKQRTHQ 545
Cdd:TIGR02169 891 rdeleaqlRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED-EEIPEEELSLEDVQAELQRVEEEIRA 969
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 74201694 546 LEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDL 588
Cdd:TIGR02169 970 LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
308-592 |
1.22e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 308 IEDLenkIKEIHKRLSSAEHDQEV------WKKEQERLEVEKRemteqceRLKLELSEAQQSALRQSDAAVEEEtilphs 381
Cdd:COG1196 191 LEDI---LGELERQLEPLERQAEKaeryreLKEELKELEAELL-------LLKLRELEAELEELEAELEELEAE------ 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 382 ssvAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQ---MCVQTLEKEKSLLSQEKEELQVSLSKLSSEYEVIKST 458
Cdd:COG1196 255 ---LEELEAELAELEAELEELRLELEELELELEEAQAEEYellAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 459 ASRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAG 538
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 74201694 539 EKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQL 592
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
54-588 |
5.19e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 5.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 54 REENEATHSVLRSENERLKKLYTDLEEKHEASELQI---KQQSSSYRSQLQQKEEEINHLKERQLALQDELLRLQSAAQS 130
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIarlEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 131 AHSGSGSAPAASASSSFSygvshRVSAFHEDDMDFGDVISSQQEINRLSNEVSRLESELGHwrhiaqtkVQGAQSSDQTE 210
Cdd:COG1196 349 AEEELEEAEAELAEAEEA-----LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE--------LEEAEEALLER 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 211 ICKLQNIIKELKQNRSQDLDDHQHELSALQNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTVTDHSKVYEM 290
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 291 QntiqiLQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVE-------------KREMTEQCERLKLE- 356
Cdd:COG1196 496 L-----LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAalaaalqnivvedDEVAAAAIEYLKAAk 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 357 ------LSEAQQSALRQSDAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQMC----VQT 426
Cdd:COG1196 571 agratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAgrlrEVT 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 427 LEKEKSLLSQEKEELQVSLSKLSSEYEVIKSTASRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQE 506
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 507 ATKHVILIKDQLSKQQSEGDSVIKKLKEE--LAGEKQRTHQLEDDKMNI-------IKELTVQKEKLTHSEQALSDLQLT 577
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPpdLEELERELERLEREIEALgpvnllaIEEYEELEERYDFLSEQREDLEEA 810
|
570
....*....|.
gi 74201694 578 KQKLEDKVEDL 588
Cdd:COG1196 811 RETLEEAIEEI 821
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
337-594 |
7.13e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 7.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 337 ERLEVEKREMTEQCERLKlelseaqqsalRQSDAAV------EEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQD 410
Cdd:COG1196 189 ERLEDILGELERQLEPLE-----------RQAEKAEryrelkEELKELEAELLLLKLRELEAELEELEAELEELEAELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 411 ISLAEDNQKLQmcVQTLEKEKSLLSQEKEELQVSLSKLSSEYEVIKSTASRDLDlfsQVHDLKHNLEAKEQELNQSIHEN 490
Cdd:COG1196 258 LEAELAELEAE--LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE---RRRELEERLEELEEELAELEEEL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 491 EILMAELEELDKQNQEATKHVILIKDQLSKQQSEgdsvIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQA 570
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEA----LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
250 260
....*....|....*....|....
gi 74201694 571 LSDLQLTKQKLEDKVEDLVDQLSK 594
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAE 432
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
99-435 |
8.51e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 8.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 99 QLQQKEEEINHLKERQLALQDELLRLQSAAQSAHSGsgsapaasasssfsygVSHRVSAFHEDDMDFGDVissQQEINRL 178
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEK----------------LEELRLEVSELEEEIEEL---QKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 179 SNEVSRLESELGHwrhiaqtkVQGAQSSDQTEICKLQNIIKELKQnrsqdlddHQHELSALQNAHQQKLTEISRRHREEL 258
Cdd:TIGR02168 294 ANEISRLEQQKQI--------LRERLANLERQLEELEAQLEELES--------KLDELAEELAELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 259 SDYEERIEELENLlqqggsgvtvtdHSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQER 338
Cdd:TIGR02168 358 AELEELEAELEEL------------ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 339 LEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEETilphSSSVAEVLRLQQALTDAENEIMRLRS-LNQDISLAEDN 417
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEELERLEEAL----EELREELEEAEQALDAAERELAQLQArLDSLERLQENL 501
|
330
....*....|....*...
gi 74201694 418 QKLQMCVQTLEKEKSLLS 435
Cdd:TIGR02168 502 EGFSEGVKALLKNQSGLS 519
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
213-594 |
8.69e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 8.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 213 KLQNIIKEL------KQNRSQDLDDHQHELSALQNAHQQKLTEIsrrhREELSDYEErieelenllqqgGSGVTVTDHSK 286
Cdd:pfam15921 146 QLQNTVHELeaakclKEDMLEDSNTQIEQLRKMMLSHEGVLQEI----RSILVDFEE------------ASGKKIYEHDS 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 287 VyemqNTIQILQMEKVEStKQIEDLENKIKEIHKRLSSAEHDQEVWKKE-QERLEVEKREMTEQCERLKLE-------LS 358
Cdd:pfam15921 210 M----STMHFRSLGSAIS-KILRELDTEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQHQDRIEQLISEheveitgLT 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 359 EAQQSALRQSDAAVEEETILPHSSSVAEVLRLQQaLTDAENEIMRLRSlnqdiSLAEDNQKLQMCVQTLEKEKSLLSQEK 438
Cdd:pfam15921 285 EKASSARSQANSIQSQLEIIQEQARNQNSMYMRQ-LSDLESTVSQLRS-----ELREAKRMYEDKIEELEKQLVLANSEL 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 439 EELQVSLSKLSSEyevikstaSRDLDlfSQVHDLKHNLEAKEQELNQSIHENEILMAE-----------LEELDKQNQEA 507
Cdd:pfam15921 359 TEARTERDQFSQE--------SGNLD--DQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitidhlRRELDDRNMEV 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 508 TKHVILIKDQLSKQQSEGD---SVIKKLKEELAGEKQRTHQLEDDK---MNIIKELTVQKEKLTHSEQALSDLQLTKQKL 581
Cdd:pfam15921 429 QRLEALLKAMKSECQGQMErqmAAIQGKNESLEKVSSLTAQLESTKemlRKVVEELTAKKMTLESSERTVSDLTASLQEK 508
|
410
....*....|...
gi 74201694 582 EDKVEDLVDQLSK 594
Cdd:pfam15921 509 ERAIEATNAEITK 521
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
275-588 |
3.51e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 3.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 275 GGSGVTVTDHSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLK 354
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 355 LELSEAQQ--SALRQSDAAVEEEtilphsssVAEVLRLQQALTDAENEIMRlrSLNQdislaEDNQKLQMCVQTLEKEKS 432
Cdd:TIGR02169 744 EDLSSLEQeiENVKSELKELEAR--------IEELEEDLHKLEEALNDLEA--RLSH-----SRIPEIQAELSKLEEEVS 808
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 433 LLSQEKEELQVSLSKLSSEYEVIKSTASrdlDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVI 512
Cdd:TIGR02169 809 RIEARLREIEQKLNRLTLEKEYLEKEIQ---ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 513 LIK---DQLSKQQSEGDSVIKKLKEELAGEKQRTHQLE------DDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLED 583
Cdd:TIGR02169 886 DLKkerDELEAQLRELERKIEELEAQIEKKRKRLSELKaklealEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEE 965
|
....*
gi 74201694 584 KVEDL 588
Cdd:TIGR02169 966 EIRAL 970
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
294-555 |
5.03e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 5.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 294 IQIL-QMEKV------ESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEqcERLKLELSEAQQSALR 366
Cdd:PHA02562 162 ISVLsEMDKLnkdkirELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYD--ELVEEAKTIKAEIEEL 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 367 QSDAAVEEETILPHSSSVAevlRLQQALTDAENEImrlRSLNQDISLAEDNQKLQMCVQTLEKEKSLLS---QEKEELQV 443
Cdd:PHA02562 240 TDELLNLVMDIEDPSAALN---KLNTAAAKIKSKI---EQFQKVIKMYEKGGVCPTCTQQISEGPDRITkikDKLKELQH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 444 SLSKLSSEYEVIKSTASRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQnqeatkhVILIKDQLSKQQS 523
Cdd:PHA02562 314 SLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE-------FVDNAEELAKLQD 386
|
250 260 270
....*....|....*....|....*....|....*...
gi 74201694 524 EGDSVIKKlKEELAGEKQR----THQLEDD--KMNIIK 555
Cdd:PHA02562 387 ELDKIVKT-KSELVKEKYHrgivTDLLKDSgiKASIIK 423
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
387-595 |
7.72e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 7.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 387 VLRLQQALTDAENEIMRLRSLNQDISLAEdnQKLQMCVQTLEKEKSLLSQEKEELQVSLSKLSSEYEVIKSTASRDLDLF 466
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKAL--AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 467 SQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQL 546
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 74201694 547 EDDKMNIIKELTV---QKEKLTHS----EQALSDLQLTKQKLEDKVEDLVDQLSKS 595
Cdd:TIGR02168 830 ERRIAATERRLEDleeQIEELSEDieslAAEIEELEELIEELESELEALLNERASL 885
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
55-594 |
1.08e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 55 EENEATHSVLRSENERLKKLYTDLEEKHEASELQIKQQSSSYRS---QLQQKEEEINHLKERQLALQDELLRLQSAAQSA 131
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANlerQLEELEAQLEELESKLDELAEELAELEEKLEEL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 132 HSGSGSAPAASASSSFSYGVSHRVSAFHEDDMDF--GDVISSQQEINRLSNEVSRLESELghwrHIAQTKVQGAQSSDQT 209
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQLETlrSKVAQLELQIASLNNEIERLEARL----ERLEDRRERLQQEIEE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 210 EICKLQNIIKELKQNRSQDLDDHQHELSALQNAHQQKLTEIsrrhREELSDYEERIEELENLLQQGGSGVTVTdhskvye 289
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL----REELEEAEQALDAAERELAQLQARLDSL------- 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 290 mqNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKK------------------EQERLEVEKREMTEQCE 351
Cdd:TIGR02168 495 --ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAaieaalggrlqavvvenlNAAKKAIAFLKQNELGR 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 352 RLKLELSEAQQSALRQSDAAVEEE--------------------TILPHSSSVAEVLRLQQALTDA--ENEIMRLRSLNQ 409
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQGNDREILKNiegflgvakdlvkfdpklrkALSYLLGGVLVVDDLDNALELAkkLRPGYRIVTLDG 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 410 DI----------------SLAEDNQKLQMCVQTLEKEKSLLSQEKEELQVSLSKLSSEYEVIKSTASRDLDLFSQVHDLK 473
Cdd:TIGR02168 653 DLvrpggvitggsaktnsSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 474 HNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVilikDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNI 553
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL----EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL 808
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 74201694 554 IKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSK 594
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
181-461 |
2.29e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 181 EVSRLESELGHWRHiAQTKVQgAQSSDQTEICKLQNIIKELKQNRSQDLDDHQHELSALQNAHQQKLTEISRRhREELSD 260
Cdd:pfam15921 532 ELQHLKNEGDHLRN-VQTECE-ALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR-RLELQE 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 261 YEERIEELENLLQQGGSGVTVTDHSKVYEMQNTIQilQMEKVESTKQIED-LENKIKEIHKRLSSAEHDQEVWKKEqerL 339
Cdd:pfam15921 609 FKILKDKKDAKIRELEARVSDLELEKVKLVNAGSE--RLRAVKDIKQERDqLLNEVKTSRNELNSLSEDYEVLKRN---F 683
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 340 EVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEETILPHSSSVAevLRLQQALTDAENEIMRLRSLNQDISLAEDNQK 419
Cdd:pfam15921 684 RNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVA--MGMQKQITAKRGQIDALQSKIQFLEEAMTNAN 761
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 74201694 420 LQMcvQTLEKEKSLLSQEKEELQVSLSKLSSEYEVIKSTASR 461
Cdd:pfam15921 762 KEK--HFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERR 801
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
337-536 |
3.65e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 337 ERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDIslaed 416
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDL----- 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 417 nQKLQMCVQTLEKEKSLLSQEKEELQVSLSKLSSEYEVIKstasrdldlfSQVHDLKHNLEAKEQElnQSIHENEILMAE 496
Cdd:COG4913 688 -AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE----------EELDELQDRLEAAEDL--ARLELRALLEER 754
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 74201694 497 LEELDKQNQEATkhvilIKDQLSKQQSEGDSVIKKLKEEL 536
Cdd:COG4913 755 FAAALGDAVERE-----LRENLEERIDALRARLNRAEEEL 789
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
172-591 |
4.18e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 4.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 172 QQEINRLSNEVSRLESELGHWRH-IAQTKVQGAQSSDQTEICKLQNIIKELkQNRSQDLDDHQHELSALQnahqqkltei 250
Cdd:COG4717 94 QEELEELEEELEELEAELEELREeLEKLEKLLQLLPLYQELEALEAELAEL-PERLEELEERLEELRELE---------- 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 251 srrhrEELSDYEERIEELENLLQQGGSGVTVTDHSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEhDQE 330
Cdd:COG4717 163 -----EELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLE-NEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 331 VWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAV----------------EEETILPHSSSVAEVLRLQQAL 394
Cdd:COG4717 237 EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVlflvlgllallflllaREKASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 395 TDAE-NEIMRLRSLNQDISLAEDNQKLQMCVQTLEKEKSLLSQEKE-ELQVSLSKLSSEYEVIKSTASRDLDLFSQVHDL 472
Cdd:COG4717 317 EEEElEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEElQLEELEQEIAALLAEAGVEDEEELRAALEQAEE 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 473 KHNLEAKEQELNQSIHenEILMAELEELDKQNQEATKHVIlikDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDK-- 550
Cdd:COG4717 397 YQELKEELEELEEQLE--ELLGELEELLEALDEEELEEEL---EELEEELEELEEELEELREELAELEAELEQLEEDGel 471
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 74201694 551 MNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQ 591
Cdd:COG4717 472 AELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
199-460 |
5.88e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 5.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 199 KVQGAQSSDQTEICKLQNIIKELKQN---RSQDLDDHQHELSAL----QNAHQQKLTEIS---RRHREELSDYEERIEEL 268
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRleeIEQLLEELNKKIKDLgeeeQLRVKEKIGELEaeiASLERSIAEKERELEDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 269 ENLLQQGGSGVTVTDhSKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTE 348
Cdd:TIGR02169 321 EERLAKLEAEIDKLL-AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 349 QCERLKLELSEAQQSALRQSdaaveeetilphsssvAEVLRLQQALTDAENEIMRLRSLNQDI--SLAEDNQKLQMCVQT 426
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLS----------------EELADLNAAIAGIEAKINELEEEKEDKalEIKKQEWKLEQLAAD 463
|
250 260 270
....*....|....*....|....*....|....*..
gi 74201694 427 LEKEKSLLSQEKEELQV---SLSKLSSEYEVIKSTAS 460
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRvekELSKLQRELAEAEAQAR 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
68-595 |
6.53e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 6.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 68 NERLKKLYTDLEEKhEASELQIKQQSSSYRSQLQQKEEEINHLKERQLALQDELLRLQSAAQSAHSGSGSAPAASASSSf 147
Cdd:TIGR02168 308 RERLANLERQLEEL-EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR- 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 148 sygvshrvsafheddmdfGDVISSQQEINRLSNEVSRLESELghwrHIAQTKVQGAQSSDQTEICKLQNIIKELKQNRSQ 227
Cdd:TIGR02168 386 ------------------SKVAQLELQIASLNNEIERLEARL----ERLEDRRERLQQEIEELLKKLEEAELKELQAELE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 228 DLDDHQHELSALQNAHQQKLTEIsrrhREELSDYEERIEELENLLQQGGSGVTVTdhskvyemqNTIQILQMEKVESTKQ 307
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEEL----REELEEAEQALDAAERELAQLQARLDSL---------ERLQENLEGFSEGVKA 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 308 IEDLENKIKEIHKRLSSAEHDQEVWKKEQErlevekremTEQCERLKLELSEAQQSALRQSDAAVEEE----TILPHSSS 383
Cdd:TIGR02168 511 LLKNQSGLSGILGVLSELISVDEGYEAAIE---------AALGGRLQAVVVENLNAAKKAIAFLKQNElgrvTFLPLDSI 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 384 VAEVLRLQQALTdAENEIMRLRSLNQDISLAEDNQKL-------QMCVQTLEKEKSLLSQEK-EELQVSLS--KLSSEYE 453
Cdd:TIGR02168 582 KGTEIQGNDREI-LKNIEGFLGVAKDLVKFDPKLRKAlsyllggVLVVDDLDNALELAKKLRpGYRIVTLDgdLVRPGGV 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 454 VIKSTASRDLDLFSQVHDLKhNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLK 533
Cdd:TIGR02168 661 ITGGSAKTNSSILERRREIE-ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74201694 534 EELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKS 595
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
219-548 |
9.30e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.20 E-value: 9.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 219 KELKQNRSQDLDDHQH--ELSALQNAHQQKLTEisrrhREELSDYEerIEELENLLQQGGSGVTVTDHSKVYEMQNTIQI 296
Cdd:PLN02939 89 KSTSSDDDHNRASMQRdeAIAAIDNEQQTNSKD-----GEQLSDFQ--LEDLVGMIQNAEKNILLLNQARLQALEDLEKI 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 297 LqmekvestKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVekreMTEQCERLKLELSEAQQSALRQSDAAVEEet 376
Cdd:PLN02939 162 L--------TEKEALQGKINILEMRLSETDARIKLAAQEKIHVEI----LEEQLEKLRNELLIRGATEGLCVHSLSKE-- 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 377 ilphsssvAEVLRLQQALTdaENEIMRLRSlnQDISLAEDNQKLQMcvqtLEKEKSLLSQEKEEL-------QVSLSKLS 449
Cdd:PLN02939 228 --------LDVLKEENMLL--KDDIQFLKA--ELIEVAETEERVFK----LEKERSLLDASLRELeskfivaQEDVSKLS 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 450 S-----------EYEVIKSTASRDLDLFSQVHDLKHNLEAKEQELNQSIHENEI---------LMAE----LEE-LDKQN 504
Cdd:PLN02939 292 PlqydcwwekveNLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVskfssykveLLQQklklLEErLQASD 371
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 74201694 505 QEATKHVILIKDQLSKQQsegdSVIKKLKEElAGEKQRTHQLED 548
Cdd:PLN02939 372 HEIHSYIQLYQESIKEFQ----DTLSKLKEE-SKKRSLEHPADD 410
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
171-475 |
9.90e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 9.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 171 SQQEINRLSNEVSRLESElghwrhIAQTKVQGAQSSDQTEIC--KLQNIIKELKQNRSqDLDDHQHELSALQ-------- 240
Cdd:TIGR02169 714 ASRKIGEIEKEIEQLEQE------EEKLKERLEELEEDLSSLeqEIENVKSELKELEA-RIEELEEDLHKLEealndlea 786
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 241 ----------NAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTvTDHSKVYEMQNTIQILQMEKVESTKQIED 310
Cdd:TIGR02169 787 rlshsripeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ-ELQEQRIDLKEQIKSIEKEIENLNGKKEE 865
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 311 LENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQsdaaveEETILPHSSSVAEVLRL 390
Cdd:TIGR02169 866 LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL------KAKLEALEEELSEIEDP 939
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 391 QQALTDAENEIMRLRSLNQDIslaednQKLQMCVQTLEKEKSLLSQEKEELQVSLSKLSSEYEVIKSTASRDLDLFSQVH 470
Cdd:TIGR02169 940 KGEDEEIPEEELSLEDVQAEL------QRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013
|
....*
gi 74201694 471 DLKHN 475
Cdd:TIGR02169 1014 KKKRE 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
54-389 |
1.12e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 54 REENEATHSVLRSENERLKKLYTDLEEKHEASELQIKQQSSSYRSQLQQKEEEINHLK--ERQLA-LQDELLRLQSAAQS 130
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEaiERQLAsLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 131 AHSGSGSAPAASASssfsygVSHRVSAFHEDDMdfgdvISSQQEINRLSNEVSRLESELGHWRHIAQtKVQGAQSSDQTE 210
Cdd:TIGR02169 263 LEKRLEEIEQLLEE------LNKKIKDLGEEEQ-----LRVKEKIGELEAEIASLERSIAEKERELE-DAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 211 ICKLQNIIKELK------QNRSQDLDDHQHELSALQNAHQQKLTEISRRH---REELSDYEERIEELENllqqggsgvtv 281
Cdd:TIGR02169 331 IDKLLAEIEELEreieeeRKRRDKLTEEYAELKEELEDLRAELEEVDKEFaetRDELKDYREKLEKLKR----------- 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 282 tdhsKVYEMQNTIQILQMEKVESTKQIEDLENKIKEIHKRLSSAEHD-----QEVWKKEQER---------LEVEKREMT 347
Cdd:TIGR02169 400 ----EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEkedkaLEIKKQEWKLeqlaadlskYEQELYDLK 475
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 74201694 348 EQCERLKLELSEAQQ---SALRQSDAAVEEEtilPHSSSVAEVLR 389
Cdd:TIGR02169 476 EEYDRVEKELSKLQRelaEAEAQARASEERV---RGGRAVEEVLK 517
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
170-594 |
1.75e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.43 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 170 SSQQEINRLSNEVSRLESELghwrhiaqTKVQGAQSSDQTEICKLQNIIKELKQ-----------------NRSQDLDDH 232
Cdd:PRK01156 239 SALNELSSLEDMKNRYESEI--------KTAESDLSMELEKNNYYKELEERHMKiindpvyknrnyindyfKYKNDIENK 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 233 QHELSALqNAHQQKLTEISRRHREELSDYEE------RIEELENLLQQggsgvTVTDHSKVYEMQNTIQILQMEKVESTK 306
Cdd:PRK01156 311 KQILSNI-DAEINKYHAIIKKLSVLQKDYNDyikkksRYDDLNNQILE-----LEGYEMDYNSYLKSIESLKKKIEEYSK 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 307 QIEDLENKIKEIHKRlssAEHDQEVWKKEQERLEVEKREMTEQCERLklelsEAQQSALRQSDAAVEEETILPHSSSVAE 386
Cdd:PRK01156 385 NIERMSAFISEILKI---QEIDPDAIKKELNEINVKLQDISSKVSSL-----NQRIRALRENLDELSRNMEMLNGQSVCP 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 387 VLrlqqALTDAENEIMRLRSlnqdiSLAEDNQKLQMCVQTLEKEKSLLSQEKEELQVSLSKLSSEyEVIKSTASRDL--D 464
Cdd:PRK01156 457 VC----GTTLGEEKSNHIIN-----HYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESE-EINKSINEYNKieS 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 465 LFSQVHDLKHNL-EAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKD-QLSKQQSEGDSVIKKLKEELAGEKQR 542
Cdd:PRK01156 527 ARADLEDIKIKInELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLiDIETNRSRSNEIKKQLNDLESRLQEI 606
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 74201694 543 THQLEDDKM---NIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSK 594
Cdd:PRK01156 607 EIGFPDDKSyidKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAE 661
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
208-442 |
1.84e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 208 QTEICKLQNIIKELKQNRSQDLDDHQHELSALQNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTVTDHSKV 287
Cdd:pfam12128 663 QSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARR 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 288 YEMQNTIQILQMEKVESTK-------QIEDLENKIKEIHKRLSSAEHD-----------QEVWKKEQERLEVEKREMTEQ 349
Cdd:pfam12128 743 SGAKAELKALETWYKRDLAslgvdpdVIAKLKREIRTLERKIERIAVRrqevlryfdwyQETWLQRRPRLATQLSNIERA 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 350 CERLKLELSEAQQSALRQSdAAVEEETilpHSSSVAEVlRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQMCVQTLEK 429
Cdd:pfam12128 823 ISELQQQLARLIADTKLRR-AKLEMER---KASEKQQV-RLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQLED 897
|
250
....*....|...
gi 74201694 430 EKSLLSQEKEELQ 442
Cdd:pfam12128 898 LKLKRDYLSESVK 910
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
64-583 |
2.06e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 64 LRSENERLKKLYTDLEEKhEASELQIKQQSSSYRSQLQQKEEEINHLKERQLALQDELLRLQSAAQSAHSGSgsapaasa 143
Cdd:PRK03918 226 LEKEVKELEELKEEIEEL-EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYI-------- 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 144 sssfsygvshRVSAFHEDDMDfgdvissqqEINRLSNEVSRLESELghwrHIAQTKVQGAqSSDQTEICKLQNIIKELKQ 223
Cdd:PRK03918 297 ----------KLSEFYEEYLD---------ELREIEKRLSRLEEEI----NGIEERIKEL-EEKEERLEELKKKLKELEK 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 224 NRSQDLDDHQhelsaLQNAHQQKLTEIsRRHREELSDYEerIEELENLLQQGGSGVTvtdhskvyEMQNTIQILQMEKVE 303
Cdd:PRK03918 353 RLEELEERHE-----LYEEAKAKKEEL-ERLKKRLTGLT--PEKLEKELEELEKAKE--------EIEEEISKITARIGE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 304 STKQIEDLENKIKEIHK---------RLSSAEHDQEV---WKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAA 371
Cdd:PRK03918 417 LKKEIKELKKAIEELKKakgkcpvcgRELTEEHRKELleeYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 372 VEEETI-----LPHSSSVAEVLRLQQALTDAENEIMRLRSLNQDI-SLAEDNQKLQmcvqTLEKEKSLLSQEKEELQVSL 445
Cdd:PRK03918 497 KLKELAeqlkeLEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIkSLKKELEKLE----ELKKKLAELEKKLDELEEEL 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 446 SKLSSEYEVIKSTASRDLDL-----------FSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILI 514
Cdd:PRK03918 573 AELLKELEELGFESVEELEErlkelepfyneYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEEL 652
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 515 KDQLSKQQSEGDSVIK-KLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLED 583
Cdd:PRK03918 653 EKKYSEEEYEELREEYlELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
223-562 |
3.31e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 40.51 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 223 QNRSQDLDDHQHELSALQnAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVTVTDHSKVYEMQNTIQILQMEKV 302
Cdd:pfam07111 252 QHLQEDRADLQATVELLQ-VRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMVQLKAQDLEHR 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 303 ESTKQIEDlenKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSD--AAVEEETILPH 380
Cdd:pfam07111 331 DSVKQLRG---QVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQqtASAEEQLKFVV 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 381 SSSVAEVLRLQQALTDAENEIMRLRSLNQDISLAednqklqmcVQTLEKEKSLLSQekeelQVSLSKLSSEYEVIKSTAS 460
Cdd:pfam07111 408 NAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYA---------VRKVHTIKGLMAR-----KVALAQLRQESCPPPPPAP 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 461 R-DLDLFSQVHDLKHNLEAKEQELNQSIHeneILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGE 539
Cdd:pfam07111 474 PvDADLSLELEQLREERNRLDAELQLSAH---LIQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVA 550
|
330 340
....*....|....*....|...
gi 74201694 540 KQRTHQLEDDKMNIIKELTVQKE 562
Cdd:pfam07111 551 RQGQQESTEEAASLRQELTQQQE 573
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
295-507 |
4.36e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 4.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 295 QILQMEKVESTKQIEDLENKIKEIHKRLSSAEHDQEVWKK--------EQERLEVEK-REMTEQCERLKLELSEAQQSAL 365
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQknglvdlsEEAKLLLQQlSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 366 RQSDAAVEEETILPHSSSVAEVLRLQQALTDAENEIMRLRSlnqdiSLAEDNQKLQmcvQTLEKEKSLLSQEKEELQVSL 445
Cdd:COG3206 244 ALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSA-----RYTPNHPDVI---ALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 74201694 446 SKLSSEYEVIKstaSRDLDLFSQVHDLKHNLE---AKEQELNQSIHENEILMAELEELDKQNQEA 507
Cdd:COG3206 316 ASLEAELEALQ---AREASLQAQLAQLEARLAelpELEAELRRLEREVEVARELYESLLQRLEEA 377
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
394-594 |
4.65e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 394 LTDAENEIMR-LRSLNQDISLAEDNQKLQMCVQTLEKEKSLLS-----QEKEELQVSLSKLSSEYEVIKSTASRDLDLFS 467
Cdd:TIGR02168 191 LEDILNELERqLKSLERQAEKAERYKELKAELRELELALLVLRleelrEELEELQEELKEAEEELEELTAELQELEEKLE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 468 QVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLE 547
Cdd:TIGR02168 271 ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 74201694 548 DDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSK 594
Cdd:TIGR02168 351 EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS 397
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
468-595 |
5.19e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 39.81 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 468 QVHDLKHNLEAKEQELNQSIHENEILMAELEELdkqnqeatkhviliKDQLSKQQSEGDSVIKKLKEELAGE-KQRTHQL 546
Cdd:PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKL--------------KEELEEKKEKLQEEEDKLLEEAEKEaQQAIKEA 582
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 74201694 547 EDDKMNIIKELTvQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKS 595
Cdd:PRK00409 583 KKEADEIIKELR-QLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQ 630
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
167-594 |
7.63e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.23 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 167 DVISSQQEINRLSNEVSRleselghwrhiAQTKVQGAQSSDQTEICKLQNIIKELKQNRSQ--DLDDHQHEL-SALQNAH 243
Cdd:TIGR04523 233 NIEKKQQEINEKTTEISN-----------TQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKikELEKQLNQLkSEISDLN 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 244 QQKLTEISRRHREELSDYEERIEELENLLQQGGSGVT--------------------VTDHSKVYEMQNTIQILQMEKVE 303
Cdd:TIGR04523 302 NQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISqlneqisqlkkeltnsesenSEKQRELEEKQNEIEKLKKENQS 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 304 STKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERLEVEKREMTEQCERLKLELSEAQQSALRQSDAAVEEETILPHSSS 383
Cdd:TIGR04523 382 YKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDN 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 384 VAEVLRLQQALTDAENEIMRLRSLNQDISLAEDNQKLQMC---VQTLEKEKSLLSQEKEELQVSLSKLSSEYEVIKS-TA 459
Cdd:TIGR04523 462 TRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLneeKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESkIS 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 460 SRDLDLFSQVHDLKHNLEAKE-----QELNQSIHENEILMAELEELDKQNQEATKHviliKDQLSKQQSEGDSVIKKLKE 534
Cdd:TIGR04523 542 DLEDELNKDDFELKKENLEKEideknKEIEELKQTQKSLKKKQEEKQELIDQKEKE----KKDLIKEIEEKEKKISSLEK 617
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 535 ELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSK 594
Cdd:TIGR04523 618 ELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDD 677
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
195-443 |
7.65e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.23 E-value: 7.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 195 IAQTKVQGAQSSDQTEICKLQNIIKELKQNRsqdldDHQHELSALQNAHQQKLTEISRRHREELSDYEERIEELEN-LLQ 273
Cdd:PHA02562 171 LNKDKIRELNQQIQTLDMKIDHIQQQIKTYN-----KNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDeLLN 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 274 QGGSGVTVTDH-----SKVYEMQNTIQILQMEKV---------ESTKQIEDLENKIKEIHKRLSSAEHDQEVWKKEQERL 339
Cdd:PHA02562 246 LVMDIEDPSAAlnklnTAAAKIKSKIEQFQKVIKmyekggvcpTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74201694 340 EVEKREMTEQCERLkLELseaqQSALRQSDAAVeeetilphSSSVAEVLRLQQALTDAENEImrlrslnqdISLAEDNQK 419
Cdd:PHA02562 326 EEIMDEFNEQSKKL-LEL----KNKISTNKQSL--------ITLVDKAKKVKAAIEELQAEF---------VDNAEELAK 383
|
250 260
....*....|....*....|....
gi 74201694 420 LQMCVQTLEKEKSLLSQEKEELQV 443
Cdd:PHA02562 384 LQDELDKIVKTKSELVKEKYHRGI 407
|
|
| |
