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Conserved domains on  [gi|74965632|sp|Q21827|]
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RecName: Full=G patch domain-containing protein 1 homolog

Protein Classification

G patch domain-containing protein 1( domain architecture ID 10543151)

G patch domain-containing protein 1 (GPTC1)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1604 pfam07713
Protein of unknown function (DUF1604); This family is found at the N-terminus of several ...
 27-111 8.78e-40

Protein of unknown function (DUF1604); This family is found at the N-terminus of several eukaryotic RNA processing proteins.


:

Pssm-ID: 462241  Cd Length: 84  Bit Score: 141.12  E-value: 8.78e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74965632    27 PTQIHEEIATDEKGKRRFHGAFTGGFSAGYWNTVGSKQGWVPQVFSSSRNERGEQIKQRAEDFMDAEDLGEYGIGnRSIK 106
Cdd:pfam07713   1 YVPVWKQEVRDEQGRRRFHGAFTGGFSAGYFNTVGSKEGWTPSTFKSSRSNRAKKKQQRPEDFMDEEDLGEFGAP-RQLR 79


                  ....*
gi 74965632   107 QTAAF 111
Cdd:pfam07713  80 TTDEF 84
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 145-194 7.38e-07

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


:

Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 46.35  E-value: 7.38e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 74965632   145 SNSIGVRMLRSMGWREGRGIGlanvkQKQKRGGESSEAQFDREQASKVAP 194
Cdd:pfam01585   1 TSNIGFKLLQKMGWKEGQGLG-----KNEQGIAEPIEAKIKKDRRGLGAE 45
 
Name Accession Description Interval E-value
DUF1604 pfam07713
Protein of unknown function (DUF1604); This family is found at the N-terminus of several ...
 27-111 8.78e-40

Protein of unknown function (DUF1604); This family is found at the N-terminus of several eukaryotic RNA processing proteins.


Pssm-ID: 462241  Cd Length: 84  Bit Score: 141.12  E-value: 8.78e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74965632    27 PTQIHEEIATDEKGKRRFHGAFTGGFSAGYWNTVGSKQGWVPQVFSSSRNERGEQIKQRAEDFMDAEDLGEYGIGnRSIK 106
Cdd:pfam07713   1 YVPVWKQEVRDEQGRRRFHGAFTGGFSAGYFNTVGSKEGWTPSTFKSSRSNRAKKKQQRPEDFMDEEDLGEFGAP-RQLR 79


                  ....*
gi 74965632   107 QTAAF 111
Cdd:pfam07713  80 TTDEF 84
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 145-194 7.38e-07

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 46.35  E-value: 7.38e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 74965632   145 SNSIGVRMLRSMGWREGRGIGlanvkQKQKRGGESSEAQFDREQASKVAP 194
Cdd:pfam01585   1 TSNIGFKLLQKMGWKEGQGLG-----KNEQGIAEPIEAKIKKDRRGLGAE 45
G_patch smart00443
glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in ...
 143-187 5.81e-06

glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.


Pssm-ID: 197727 [Multi-domain]  Cd Length: 47  Bit Score: 44.07  E-value: 5.81e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 74965632    143 PVSNSIGVRMLRSMGWREGRGIGLanvKQKQKRGGESSEAQFDRE 187
Cdd:smart00443   1 ISTSNIGAKLLRKMGWKEGQGLGK---NEQGIVEPISAEIKKDRK 42
 
Name Accession Description Interval E-value
DUF1604 pfam07713
Protein of unknown function (DUF1604); This family is found at the N-terminus of several ...
 27-111 8.78e-40

Protein of unknown function (DUF1604); This family is found at the N-terminus of several eukaryotic RNA processing proteins.


Pssm-ID: 462241  Cd Length: 84  Bit Score: 141.12  E-value: 8.78e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74965632    27 PTQIHEEIATDEKGKRRFHGAFTGGFSAGYWNTVGSKQGWVPQVFSSSRNERGEQIKQRAEDFMDAEDLGEYGIGnRSIK 106
Cdd:pfam07713   1 YVPVWKQEVRDEQGRRRFHGAFTGGFSAGYFNTVGSKEGWTPSTFKSSRSNRAKKKQQRPEDFMDEEDLGEFGAP-RQLR 79


                  ....*
gi 74965632   107 QTAAF 111
Cdd:pfam07713  80 TTDEF 84
G-patch pfam01585
G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in ...
 145-194 7.38e-07

G-patch domain; This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines.


Pssm-ID: 396249 [Multi-domain]  Cd Length: 45  Bit Score: 46.35  E-value: 7.38e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 74965632   145 SNSIGVRMLRSMGWREGRGIGlanvkQKQKRGGESSEAQFDREQASKVAP 194
Cdd:pfam01585   1 TSNIGFKLLQKMGWKEGQGLG-----KNEQGIAEPIEAKIKKDRRGLGAE 45
G_patch smart00443
glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in ...
 143-187 5.81e-06

glycine rich nucleic binding domain; A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.


Pssm-ID: 197727 [Multi-domain]  Cd Length: 47  Bit Score: 44.07  E-value: 5.81e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 74965632    143 PVSNSIGVRMLRSMGWREGRGIGLanvKQKQKRGGESSEAQFDRE 187
Cdd:smart00443   1 ISTSNIGAKLLRKMGWKEGQGLGK---NEQGIVEPISAEIKKDRK 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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