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Conserved domains on  [gi|7546376]
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Chain A, PROTEIN (CYTOCHROME C-553)

Protein Classification

cytochrome c( domain architecture ID 10601782)

cytochrome c is an electron carrier protein that contains one or more heme groups

CATH:  1.10.760.10
Gene Ontology:  GO:0009055|GO:0020037
PubMed:  12594933|18568041|10395550
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
2-67 2.06e-10

Cytochrome C oxidase, cbb3-type, subunit III;


:

Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 50.87  E-value: 2.06e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7546376     2 DAEAVVQQKCISCHGGDLTGASapaidKAGANYSEEEILDIILNGQGGMP--GGIAKGAEAEAVAAWL 67
Cdd:pfam13442  5 AGEALYAANCASCHGTGGAGPS-----LAGRALPPEALVDIIRNGKGAMPafGGDLSDEELEALAAYL 67
 
Name Accession Description Interval E-value
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
2-67 2.06e-10

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 50.87  E-value: 2.06e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7546376     2 DAEAVVQQKCISCHGGDLTGASapaidKAGANYSEEEILDIILNGQGGMP--GGIAKGAEAEAVAAWL 67
Cdd:pfam13442  5 AGEALYAANCASCHGTGGAGPS-----LAGRALPPEALVDIIRNGKGAMPafGGDLSDEELEALAAYL 67
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
4-68 9.12e-07

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 43.40  E-value: 9.12e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7546376    4 EAVVQQKCISCHGGDLTGASAPA---IDKAGANYSEEEILDIILNG--QGGMP--GGIAKGAEAEAVAAWLA 68
Cdd:COG2010  93 KALYEQNCAACHGADGKGGLGAApnlTDDALYGGDPEALVETILNGrpGGAMPafGGQLSDEEIAALAAYLR 164
 
Name Accession Description Interval E-value
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
2-67 2.06e-10

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 50.87  E-value: 2.06e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7546376     2 DAEAVVQQKCISCHGGDLTGASapaidKAGANYSEEEILDIILNGQGGMP--GGIAKGAEAEAVAAWL 67
Cdd:pfam13442  5 AGEALYAANCASCHGTGGAGPS-----LAGRALPPEALVDIIRNGKGAMPafGGDLSDEELEALAAYL 67
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
4-68 9.12e-07

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 43.40  E-value: 9.12e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7546376    4 EAVVQQKCISCHGGDLTGASAPA---IDKAGANYSEEEILDIILNG--QGGMP--GGIAKGAEAEAVAAWLA 68
Cdd:COG2010  93 KALYEQNCAACHGADGKGGLGAApnlTDDALYGGDPEALVETILNGrpGGAMPafGGQLSDEEIAALAAYLR 164
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 5-68 1.51e-03

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 33.67  E-value: 1.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7546376     5 AVVQQKCISCHGGDLTGAS--APAIDKAGANYSEEEILDIILNG----------QGGMPGGIAKG------AEAEAVAAW 66
Cdd:pfam00034  5 KLFAANCAACHGVNGEGAGagGPDLAGLAARYPGDALGAIRENKhaiggggvdrAGGPPGTGMPAfdgltdEEIADLVAY 84


                 ..
gi 7546376    67 LA 68
Cdd:pfam00034 85 LL 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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