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Conserved domains on  [gi|761641717|gb|AJP64238|]
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egg receptor for bindin, partial [Strongylocentrotus purpuratus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TSP1_ADAMTS super family cl40597
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
 1-46 1.54e-09

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


The actual alignment was detected with superfamily member pfam19030:

Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 47.83  E-value: 1.54e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 761641717   1 CSVSCGPGLRSRSIFCVSE-SNQVVDDSFCAGLVRQVESESCNLTPC 46
Cdd:pfam19030  9 CSVTCGGGVQTRLVQCVQKgGGSIVPDSECSAQKKPPETQSCNLKPC 55
 
Name Accession Description Interval E-value
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
 1-46 1.54e-09

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 47.83  E-value: 1.54e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 761641717   1 CSVSCGPGLRSRSIFCVSE-SNQVVDDSFCAGLVRQVESESCNLTPC 46
Cdd:pfam19030  9 CSVTCGGGVQTRLVQCVQKgGGSIVPDSECSAQKKPPETQSCNLKPC 55
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 1-46 2.59e-04

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 34.48  E-value: 2.59e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 761641717    1 CSVSCGPGLRSRSIFCVSESNQvVDDSFCAGLvrQVESESCNLTPC 46
Cdd:smart00209 10 CSVTCGGGVQTRTRSCCSPPPQ-NGGGPCTGE--DVETRACNEQPC 52
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 1-59 2.03e-03

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 33.78  E-value: 2.03e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 761641717   1 CSVSCGPGLRSRsifcvseSNQVVDDSFCAGLVRQVESESCNLTPCTITYTYEVQPFPE 59
Cdd:PTZ00441 249 CSVTCGKGTHSR-------SRPILHEGCTTHMVEECEEEECPVEPEPLPVPAPVPPTPE 300
 
Name Accession Description Interval E-value
TSP1_ADAMTS pfam19030
Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found ...
 1-46 1.54e-09

Thrombospondin type 1 domain; This subfamily of thrombospondin type 1 repeats are mainly found in ADAMTS proteins.


Pssm-ID: 465950 [Multi-domain]  Cd Length: 55  Bit Score: 47.83  E-value: 1.54e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 761641717   1 CSVSCGPGLRSRSIFCVSE-SNQVVDDSFCAGLVRQVESESCNLTPC 46
Cdd:pfam19030  9 CSVTCGGGVQTRLVQCVQKgGGSIVPDSECSAQKKPPETQSCNLKPC 55
TSP1 smart00209
Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.
 1-46 2.59e-04

Thrombospondin type 1 repeats; Type 1 repeats in thrombospondin-1 bind and activate TGF-beta.


Pssm-ID: 214559 [Multi-domain]  Cd Length: 53  Bit Score: 34.48  E-value: 2.59e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 761641717    1 CSVSCGPGLRSRSIFCVSESNQvVDDSFCAGLvrQVESESCNLTPC 46
Cdd:smart00209 10 CSVTCGGGVQTRTRSCCSPPPQ-NGGGPCTGE--DVETRACNEQPC 52
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 1-59 2.03e-03

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 33.78  E-value: 2.03e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 761641717   1 CSVSCGPGLRSRsifcvseSNQVVDDSFCAGLVRQVESESCNLTPCTITYTYEVQPFPE 59
Cdd:PTZ00441 249 CSVTCGKGTHSR-------SRPILHEGCTTHMVEECEEEECPVEPEPLPVPAPVPPTPE 300
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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