|
Name |
Accession |
Description |
Interval |
E-value |
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
1-576 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 1014.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:PRK14965 1 MSYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
Cdd:PRK14965 81 EITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Cdd:PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAEL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTDLLDLSEAELATLRQQAE 320
Cdd:PRK14965 241 LGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAELAELRAQAA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 321 SVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAVPVDQLLERLNKIEEGSGGGVadaRAQWRATPPAPA 400
Cdd:PRK14965 321 AADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATLAPGAPVSELLDRLEALERGAPAPP---SAAWGAPTPAAP 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 401 GSPTPARAPERTAATPPP----RPAERQAAPSAPAPRREEAKPvSEPRRTGDSWADFVALVKGAKPRLGSMLEQGSPLVV 476
Cdd:PRK14965 398 AAPPPAAAPPVPPAAPARpaaaRPAPAPAPPAAAAPPARSADP-AAAASAGDRWRAFVAFVKGKKPALGASLEQGSPLGV 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 477 SADRLEIGFPEGAFALASLRDSDSQAALKELARQFFLAEPVLVMRPLAPDAAEAPPNLLEKKRVEKEQQQTVLKQAATSH 556
Cdd:PRK14965 477 SAGLLEIGFPEGSFELSAMQDPDSRAELKALAEQFFGRPTRLRITVLAAPPGAAPPSLAEKKAAEREQRQARLREEAREH 556
|
570 580
....*....|....*....|
gi 78195867 557 PAVADALDVFGGTLAEVEPL 576
Cdd:PRK14965 557 PLVQEALRVFGGEIDEVEEL 576
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
1-574 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 583.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:PRK05563 1 MMYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
Cdd:PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Cdd:PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDgTDLLDLSEAELATLRQQAE 320
Cdd:PRK05563 241 TGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPE-LEILDESTENDELFKELSE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 321 SVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAVP-----VDQLLERLNKIEE----GSGGGVadaraq 391
Cdd:PRK05563 320 KLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQAAASPeydteLEVLLQRVEQLEQelkqLKAQPV------ 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 392 wraTPPAPAGSPTPARAPERTAATPPPRPAERQAAPSAPAPRREEAKpvseprrtgDSWADFVALVKGAKPRLGSMLEQG 471
Cdd:PRK05563 394 ---GVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLELLK---------NVWGEILESLKAQRKSLRALLVNS 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 472 SPLVVSADRLEIGFPEGAFALASLRDSDSQAALKELARQFFLAEP--VLVMrplapdaaEAPPNLLEKKRVEKEQQQTVL 549
Cdd:PRK05563 462 EPVAASEDTVVLAFEYEIHFEKAMLDKELNDTIENILSKLLGKSVeiVAVP--------EDEWQKIREEFLQKHKNEEEE 533
|
570 580
....*....|....*....|....*
gi 78195867 550 KQAATSHPAVADALDVFGGTLAEVE 574
Cdd:PRK05563 534 EEEEEELPLIPEAKELFGEDLVEII 558
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
3-359 |
0e+00 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 562.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 3 YLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEI 82
Cdd:TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 83 TAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162
Cdd:TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 163 PITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSLLG 242
Cdd:TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGKITYEDVNELLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 243 VVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGtdLLDLSEAELATLRQQAESV 322
Cdd:TIGR02397 241 LVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSN--LLAVLESEQEFLKELALKL 318
|
330 340 350
....*....|....*....|....*....|....*..
gi 78195867 323 PLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMA 359
Cdd:TIGR02397 319 SLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
1-359 |
5.19e-170 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 485.85 E-value: 5.19e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVlarkwrPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:COG2812 1 MSYQV------PQTFDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGPTGEPCGECESCR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDG-ASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEP 159
Cdd:COG2812 75 AIAAGSHPDVIEIDAeASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 160 HKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFcgdqvrdeevvs 239
Cdd:COG2812 155 QKLLPTILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQAIAF------------ 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 240 llGVVDRR-LLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTDLldLSEAELATLRQQ 318
Cdd:COG2812 223 --GLLDRReLLLDLLEALLAGDVAALLALAEELAKRGRDLKRFLDDLLSLLRDLLLLKLGPDAELL--VNEDERERLQEL 298
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 78195867 319 AESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMA 359
Cdd:COG2812 299 ARRLSPERLLRAIQILLEARRELERNVNPRLALEMLLLRLA 339
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
3-577 |
1.77e-150 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 445.89 E-value: 1.77e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 3 YLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCE-----QGMSPEPCNVCP 77
Cdd:PRK09111 11 YRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEgpdgdGGPTIDLCGVGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 78 ACTEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157
Cdd:PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 158 EPHKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEV 237
Cdd:PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAV 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 238 VSLLGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTDLLDLSEAELATLRQ 317
Cdd:PRK09111 251 RDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDPSLSEAERTRGAE 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 318 QAESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAVPVDQLLERLNKIEEGSGGGVADARAQwRATPP 397
Cdd:PRK09111 331 FAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYAADLPTPDEALRRLQEGPPSPGGGGGGPPGG-GGAPG 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 398 APAGSPTPARAPERTAATPPPRPAERQAAPSAPAPRREEAKPVSEPRRTGDSWADFVALVKGAK-PRLGSMLEQGSPLVV 476
Cdd:PRK09111 410 APAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAPQPAVRLNSFEDIVALAEEKRdIKLKAAVERDVRLVR 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 477 SAD-RLEIGFPEGafALASLRdSDSQAALKELARQFFLaepVLVMRplapdaAEAPPNLLEKKRVEKEQqqtvLKQAATS 555
Cdd:PRK09111 490 FEPgRLEFALAPG--APRDLA-QRLARKLEEWTGRRWV---VSVSR------EGGQPTLAEQEAAAREE----REAAAEA 553
|
570 580
....*....|....*....|...
gi 78195867 556 HPAVADALDVF-GGTLAEVEPLE 577
Cdd:PRK09111 554 DPLVAAVLAAFpGAKIVDVRDLA 576
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
1-577 |
7.72e-146 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 433.47 E-value: 7.72e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGM-SPEPCNVCPAC 79
Cdd:PRK14950 1 MTVQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDpKGRPCGTCEMC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 80 TEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEP 159
Cdd:PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 160 HKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVS 239
Cdd:PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 240 LLGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTdLLDLSEAELATLRQQA 319
Cdd:PRK14950 241 LLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRS-LLDLTADEKAALQKVS 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 320 ESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKmATLAPaVPVDQLLERLNKIEEGSGGGVADARAqwratPPAP 399
Cdd:PRK14950 320 QIANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIE-ALLVP-VPAPQPAKPTAAAPSPVRPTPAPSTR-----PKAA 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 400 AGSPTPARAPERTAATPPPRPAE----------RQAAPSAPAPRREEAKPVSEP------------------RRTGDSWA 451
Cdd:PRK14950 393 AAANIPPKEPVRETATPPPVPPRpvappvphtpESAPKLTRAAIPVDEKPKYTPpappkeeekaliadgdvlEQLEAIWK 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 452 DFVALVKGAKPRLGSMLEQGS-PLVVSADRLEIGFPEgAFALASLRDSDSQAALKELARQFFLAEpvLVMRPLAPDAAEA 530
Cdd:PRK14950 473 QILRDVPPRSPAVQALLSSGVrPVSVEKNTLTLSFKS-KFHKDKIEEPENRKITEELLSNFVGKT--CAVRCTIEEKSEE 549
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 78195867 531 PPNLLEKKRvekeqqqtvlkqAATSHPAVADALDVFGGTLAEVEPLE 577
Cdd:PRK14950 550 PGDLREQIR------------EARKDHLVKAAQNIFDAQIISVEEKN 584
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
1-433 |
6.41e-140 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 420.43 E-value: 6.41e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:PRK07994 1 MSYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
Cdd:PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Cdd:PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTDlLDLSEAELAtLRQQAE 320
Cdd:PRK07994 241 LGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALD-NDMADIELR-LRELAR 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 321 SVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAVPVDQllerlNKIEEGSGGGVADARAQWRATPPAPA 400
Cdd:PRK07994 319 TLPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAFHPAAPLPE-----PEVPPQSAAPAASAQATAAPTAAVAP 393
|
410 420 430
....*....|....*....|....*....|...
gi 78195867 401 GSPTPARAPERTAATPPPRPAERQAAPSAPAPR 433
Cdd:PRK07994 394 PQAPAVPPPPASAPQQAPAVPLPETTSQLLAAR 426
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
1-572 |
3.49e-131 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 393.73 E-value: 3.49e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:PRK14969 1 MSYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
Cdd:PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Cdd:PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVgdgTDLLDLSEAELATLRQQAE 320
Cdd:PRK14969 241 LGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTV---PDSIADDLPERDRLLDLAK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 321 SVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAvpvdqllerlnkiEEGSGGGVADARAqwratppapa 400
Cdd:PRK14969 318 RLSPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAFRPS-------------EQDSGAGRAPGAV---------- 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 401 gsptparapertAATPPPRPAErQAAPSAPAprreEAKPVSEPRRTGDsWADFVALVKGAKprLGSMLEQGSPLV-VSAD 479
Cdd:PRK14969 375 ------------PGVNRTRAVP-TAAPAAPA----AATPSDRQSFNGN-WRALVDQLKLSG--LARELAQNCELKsFSED 434
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 480 RLEIGFPEgafALASLRDSDSQAALKELARQFFlAEPVLVMRPLAPDAAEAPPNLLEKkrvEKEQQQTVLKQAATSHPAV 559
Cdd:PRK14969 435 RIELRVPE---AHKHLLDKPYQDKLQAALEQHF-GRPVQLIFSLGGVSGNTPAELVSR---EKAERQSQAESAIESDGFV 507
|
570
....*....|...
gi 78195867 560 ADALDVFGGTLAE 572
Cdd:PRK14969 508 QELIEDFDATLIP 520
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
4-463 |
1.98e-126 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 390.89 E-value: 1.98e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 4 LVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEIT 83
Cdd:PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 84 AGTA--VDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHK 161
Cdd:PRK07764 83 PGGPgsLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 162 VPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQ-VRDEEVVSL 240
Cdd:PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEgVTYERAVAL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTD--LLDLSEAELATLRQQ 318
Cdd:PRK07764 243 LGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDAAErgLVDAPADQLDRMRAQ 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 319 AESVPLDDLQRHLTVLLRADGEL-GHTSfPRLVLEMALVKMatLAPAVPVDQ--LLERLNKIEEGSGGGVADARAQW-RA 394
Cdd:PRK07764 323 AQRLGPAELTRAADVVNDGLTEMrGATS-PRLLLELLCARM--LLPSASDDErgLLARLERLERRLGVAGGAGAPAAaAP 399
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 78195867 395 TPPAPAGSPTPARAPERTAATPPPRPAERQAAPSAPAPrREEAKPVSEPRRTGDSWADFVALVKGAKPR 463
Cdd:PRK07764 400 SAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAP-APAPPSPAGNAPAGGAPSPPPAAAPSAQPA 467
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
1-446 |
4.37e-124 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 376.80 E-value: 4.37e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:PRK06647 1 MSYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
Cdd:PRK06647 81 SIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Cdd:PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKavgdgtdlLDLSEAELatLRQQAE 320
Cdd:PRK06647 241 MGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLK--------HGIKNEAF--IGIKAE 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 321 SVP-------LDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAVPVDQLLERLNKIEEGSGGGVAdaraqwr 393
Cdd:PRK06647 311 RLPeklrefdLSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRLKDYVPNHELIKQIQDLESKLLEHAA------- 383
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 78195867 394 atpPAPAGSPTPARAPERTAATP-PPRPAERQAAPSAPAPRREEAKPVSEPRRT 446
Cdd:PRK06647 384 ---PDSCNFDVGSDNESTDDLSPiPIDPPLKAELPEIRSLEPDESTKEDEPLKT 434
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
1-507 |
5.62e-124 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 378.54 E-value: 5.62e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTC--EQGMSPEPCNVCPA 78
Cdd:PRK14948 1 MAYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNClnSDKPTPEPCGKCEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 79 CTEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158
Cdd:PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 159 PHKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQvLAFCGDQVRDEEVV 238
Cdd:PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQ-LSLLPGPITPEAVW 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 239 SLLGVVDRRLLLDATAAVFGRDTRTVLDIvarvdefgynmrqfCGELIDH--------------LRNLLILKAVGDGTDL 304
Cdd:PRK14948 240 DLLGAVPEQDLLNLLKALASNDPESLLDS--------------CRQLLDRgreplailqglaafYRDLLLAKTAPNRPDL 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 305 LDLSEAELATLRQQAESVPLD---DLQRHLTvllRADGELGHTSFPRLVLEMALVKMATLAPAVPVDQllerlnkIEEGS 381
Cdd:PRK14948 306 VAVSQQTWDELCKLAKQINLErilQWQQHLK---GSEYQLKNSTQPRLWLEVTLLGLLPSAFISEIAN-------ASAPA 375
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 382 GGGVADARAQWRATPPAPAGSPTPARAPERTAATPPPRPAERQAAPSAPAPR-REEAKPVSEPRRTGDSWADFVAlvKGA 460
Cdd:PRK14948 376 NPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTpPANAANAPPSLNLEELWQQILA--KLE 453
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 78195867 461 KPRLGSMLEQGSPLV-VSADRLEIGFPEGAFALASLRDSDSQAALKEL 507
Cdd:PRK14948 454 LPSTRMLLSQQAELVsLDSNRAVIAVSPNWLGMVQSRKPLLEQAFAKV 501
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
1-443 |
2.62e-121 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 371.58 E-value: 2.62e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMS--------PEP 72
Cdd:PRK14954 1 MSYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDdpvylqevTEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 73 CNVCPACTEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKF 152
Cdd:PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 153 IFATTEPHKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQ- 231
Cdd:PRK14954 161 IFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSe 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 232 ----VRDEEVVSLLGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVgDGTDLLDL 307
Cdd:PRK14954 241 aekvIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNL-RSTRLIER 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 308 SEAELATLRQQAESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKmatlapavpvdqLLErLNKIEEGSGGGVAD 387
Cdd:PRK14954 320 PESVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLR------------LIE-LVRNDGGVAPSPAG 386
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 78195867 388 ARAQWRATPPAPAGSPtPARAPERTAATPPPRPAERQAAPSAPAPrrEEAKPVSEP 443
Cdd:PRK14954 387 SPDVKKKAPEPDLPQP-DRHPGPAKPEAPGARPAELPSPASAPTP--EQQPPVARS 439
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
1-378 |
3.47e-121 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 366.84 E-value: 3.47e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:PRK14953 1 MMYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
Cdd:PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Cdd:PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTDLLDLSEAelatlrQQAE 320
Cdd:PRK14953 241 LGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDF------YRKL 314
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 78195867 321 SVPLDDLQRHLTVLLRADGElGHTSFPRLVLEMALVKMATLAPAVPVDQLLERLNKIE 378
Cdd:PRK14953 315 EKPLEALLYLEDVINKAFSE-ARTRDPLRAYELAILKLLYVKDIVPISELLKEGSKQE 371
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
1-446 |
8.95e-121 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 372.89 E-value: 8.95e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:PRK08691 1 MAYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
Cdd:PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Cdd:PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGtdlLDLSEAELATLRQQAE 320
Cdd:PRK08691 241 IGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSA---LAHDDPDSDILHRLAQ 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 321 SVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAVPVDQLLERLNKIEEGSGGGVADARAQWRATPPAPA 400
Cdd:PRK08691 318 TISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAFAPLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPR 397
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 78195867 401 GSPTPARAPERTAATPPPRPAERQAAPSAPA------PRREEAKPVSEPRRT 446
Cdd:PRK08691 398 PEAETAQTPVQTASAAAMPSEGKTAGPVSNQenndvpPWEDAPDEAQTAAGT 449
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
1-362 |
1.83e-119 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 369.92 E-value: 1.83e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCE-QGMSPEPCNVCPAc 79
Cdd:PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCShKTDLLEPCQECIE- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 80 teiTAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEP 159
Cdd:PRK07133 82 ---NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 160 HKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVS 239
Cdd:PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 240 LLGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTDLLDLSEAELatlrqqa 319
Cdd:PRK07133 239 LFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDL------- 311
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 78195867 320 ESVPLDDLQRH--LTVLLRADGELGHTSFPRLVLEMALVKMATLA 362
Cdd:PRK07133 312 EKLKIDDDFAYkfIEILFDLLKDLKISDNPNDTLEILIIKLLALS 356
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
1-366 |
2.39e-117 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 353.81 E-value: 2.39e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMS--------PEP 72
Cdd:PRK14955 1 MSYQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDdadylqevTEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 73 CNVCPACTEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKF 152
Cdd:PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 153 IFATTEPHKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQ- 231
Cdd:PRK14955 161 IFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESe 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 232 ----VRDEEVVSLLGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVgDGTDLLDL 307
Cdd:PRK14955 241 gegsIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNL-RSTRLVER 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 78195867 308 SEAELATLRQQAESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAVP 366
Cdd:PRK14955 320 PDAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIGHPAP 378
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
5-269 |
5.95e-117 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 357.42 E-value: 5.95e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 5 VLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEITA 84
Cdd:PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 85 GTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164
Cdd:PRK08451 83 NRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 165 TILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSLLGVV 244
Cdd:PRK08451 163 TILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGLL 242
|
250 260
....*....|....*....|....*
gi 78195867 245 DRRLLLDATAAVFGRDTRTVLDIVA 269
Cdd:PRK08451 243 DPSKLEDFFQAILNQDKEKLFELLK 267
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
1-513 |
3.54e-116 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 358.26 E-value: 3.54e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTC-----EQGMSPEPCNV 75
Cdd:PRK14951 1 MSYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCqgpdgQGGITATPCGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 76 CPACTEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFA 155
Cdd:PRK14951 81 CQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 156 TTEPHKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDE 235
Cdd:PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 236 EVVSLLGVVDRRL---LLDATAAvfgRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTDLLDLSEAel 312
Cdd:PRK14951 241 AVRQMLGSVDRSHvfrLIDALAQ---GDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEA-- 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 313 ATLRQQAESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAvpvdqllerlnkiEEGSGGGVADARAQW 392
Cdd:PRK14951 316 AEVARLAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLAFKPA-------------AAAEAAAPAEKKTPA 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 393 RATPPAPAGSPTPARAPERTAATPPPR-----PAERQAAPSAPAPRREEAKPVSEPRR-----------TGDSWADFVAL 456
Cdd:PRK14951 383 RPEAAAPAAAPVAQAAAAPAPAAAPAAaasapAAPPAAAPPAPVAAPAAAAPAAAPAAapaavalapapPAQAAPETVAI 462
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 78195867 457 VKGAKPRLGSMLEQGSPLVVSADRLEIGFPEGAFALASLRDSDSQAALKELARQFFL 513
Cdd:PRK14951 463 PVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDVWHATVQQLAAAEAITALARELAL 519
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
2-456 |
6.13e-115 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 349.46 E-value: 6.13e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 2 SYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCeQGMSP--EPCNVCPAC 79
Cdd:PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC-QNPTEdqEPCNQCASC 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 80 TEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEP 159
Cdd:PRK06305 82 KEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 160 HKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVS 239
Cdd:PRK06305 162 HKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 240 LLGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAvgdgtdlldlsEAELATLRQQA 319
Cdd:PRK06305 242 ALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQY-----------NKQLSSVATKY 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 320 ESVPLDDLqrhLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAVPVDQLLERLNkieegsgggvADARAQWRATPPAP 399
Cdd:PRK06305 311 SSEQLLEI---IDFLGESAKHIQLTIFEKTFLETVIIHLIRIYQRPTLSQLVSQIK----------SPAFTQLRLESCPP 377
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 78195867 400 agsPTPARAPERTAATPPPRPAER-------QAAPSAPAPR---REEAKPVSEPRRTGDSWADFVAL 456
Cdd:PRK06305 378 ---QIKSSNSQQTVSSPQPQPVAKleqgsllTAASPQTKKEtihQEVPSPSLSKSAAIDTLLQFAVV 441
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
3-437 |
3.19e-113 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 350.23 E-value: 3.19e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 3 YLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCeqgMSP----EPCNVCPA 78
Cdd:PRK14971 4 YIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINC---QNLtadgEACNECES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 79 CTEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158
Cdd:PRK14971 81 CVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 159 PHKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVV 238
Cdd:PRK14971 161 KHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 239 SLLGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDgTDLLDLSEAELATLRQQ 318
Cdd:PRK14971 241 ENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAAT-LQLLEVGESIRQRYLEQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 319 AESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLApavpvdqllerlNKIEEGSGGgvadaRAQWRATPPA 398
Cdd:PRK14971 320 AQKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQLT------------QKGDDASGG-----RGPKQHIKPV 382
|
410 420 430
....*....|....*....|....*....|....*....
gi 78195867 399 PAGSPTPARAPERTAATPPPRPAERQAAPSAPAPRREEA 437
Cdd:PRK14971 383 FTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPA 421
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1-566 |
2.25e-109 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 343.01 E-value: 2.25e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTC-----EQGMSPEPCNV 75
Cdd:PRK12323 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCtgadgEGGITAQPCGQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 76 CPACTEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFA 155
Cdd:PRK12323 81 CRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 156 TTEPHKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDE 235
Cdd:PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 236 EVVSLLGVVDRRLL---LDATAAvfgRDTRTVLDIvarVDEFGYNMRQFCGELIDhLRNLL---ILKAVGDGTDLLDLSE 309
Cdd:PRK12323 241 AVRGMLGAIDQSYLvrlLDALAA---EDGAALLAI---ADEMAGRSLSFAGALQD-LASLLqkiALAQVVPAAVQDDWPE 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 310 AElaTLRQQAESVPLDDLQ--RHLTVLLRADGELGHTSFPRLVleMALVKMATLAPAvpvdqllerlnkieeGSGGGVAD 387
Cdd:PRK12323 314 AD--DIRRLAGRFDAQEVQlfYQIANLGRSELALAPDEYAGFT--MTLLRMLAFRPG---------------QSGGGAGP 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 388 ARAQwratpPAPAGSPTPARAPERtAATPPPRPAERQAAPSAPAPRREEAKPVSEPRRTGDSWADFVALVKGAKPRLGSM 467
Cdd:PRK12323 375 ATAA-----AAPVAQPAPAAAAPA-AAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAP 448
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 468 LEQGSPLVVSAdrleigfPEGAFALASLRdSDSQAALKELARQFFLAEPVLVMRPLAPdAAEAPPNLLEKKRVEKEQQQT 547
Cdd:PRK12323 449 APAPAPAAAPA-------AAARPAAAGPR-PVAAAAAAAPARAAPAAAPAPADDDPPP-WEELPPEFASPAPAQPDAAPA 519
|
570
....*....|....*....
gi 78195867 548 VLKQAATSHPAVADALDVF 566
Cdd:PRK12323 520 GWVAESIPDPATADPDDAF 538
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
6-558 |
1.45e-108 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 337.24 E-value: 1.45e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 6 LARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEI--T 83
Cdd:PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALapN 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 84 AGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163
Cdd:PRK14952 83 GPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 164 ITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLA-FCGDQVRDEEVVSLLG 242
Cdd:PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAgAADTHVTYQRALGLLG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 243 VVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTD--LLDLSEAELATLRQQAE 320
Cdd:PRK14952 243 ATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAArgVVDAPEDVLERMREQAA 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 321 SVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAVPVDQLLERLNKIEEGSGGGVADARAqwrATPPAPA 400
Cdd:PRK14952 323 RIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLLPSASDAESALLQRVERIETRLDMSIPANLL---HNAPQAA 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 401 GSPTPARAPERTAATPPPRPAErqaaPSAPAPRREEAKPVSEprrtgdSWADFVALVKGAKPRLGSMLEQGSPLVVSADR 480
Cdd:PRK14952 400 PAPSAAAPEPKHQPAPEPRPVL----APTPASGEPNAAAVRS------MWSTVRDKVRQRSRTTEVMLAGATVRALEGNT 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 481 LEIGFPEGAFA--LASLRDSDSQA-ALKE-LARQFFL--------AEPVLVMRPLAPDAAEAPPNLLEKKRVEKEQQQTV 548
Cdd:PRK14952 470 LVLTHESAPLArrLSEQRNADVLAeALKDaLGVNWRVrcetgkpaAAASPAGGGANAPPAKPVKPPPSCLSAQRDEEESM 549
|
570
....*....|
gi 78195867 549 LKQAATSHPA 558
Cdd:PRK14952 550 LAEAGRDDPS 559
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
1-557 |
1.46e-106 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 341.70 E-value: 1.46e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:PRK14949 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
Cdd:PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Cdd:PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFcgelidhLRNLLilkavgdgtDLL---DLSE-----AEL 312
Cdd:PRK14949 241 LGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEV-------LRSLL---------ELLhqiTLTQfapaaAQQ 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 313 ATLRQQ----AESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAVPVdqllerlnkieegsgggvada 388
Cdd:PRK14949 305 SLYSEQirafAEQLSPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFVPEKPV--------------------- 363
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 389 rAQWRATPPA----PAGSPTPAraperTAATPPPRPAERQAAPSAPAPrrEEAKPVSEPRRTgdswadfVALVKGAKPRL 464
Cdd:PRK14949 364 -KRWQVDDPAeislPEGQTPSA-----LAAAVQAPHANEPQFVNAAPA--EKKTALTEQTTA-------QQQVQAANAEA 428
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 465 GSMLEQGSPLVVSADrlEIGFPEGAfALASLrDSDSQAALKELARQFFLAEPVLVMRPLA------PDAAEAPPNLLEKK 538
Cdd:PRK14949 429 VAEADASAEPADTVE--QALDDESE-LLAAL-NAEQAVILSQAQSQGFEASSSLDADNSAvpeqidSTAEQSVVNPSVTD 504
|
570
....*....|....*....
gi 78195867 539 RVEKEQQQTVLKQAATSHP 557
Cdd:PRK14949 505 TQVDDTSASNNSAADNTVD 523
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
1-576 |
3.10e-106 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 332.80 E-value: 3.10e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:PRK14959 1 MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
Cdd:PRK14959 81 KVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Cdd:PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGT-DLLDLSEAELATLRQQA 319
Cdd:PRK14959 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAAlASLDLPEDEARQWLGWA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 320 ESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAVPVDQLLERLNKIEEGSGGGVADARAQWRATPPAP 399
Cdd:PRK14959 321 KRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAMLPRLMPVESLRPSGGGASAPSGSAAEGPASGGAATIPTP 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 400 ------AGSPTPARAPERTA-ATPPPRPAERQAAP---SAPAPRREEAKPVSEPRRTGDSWA----DFVALVKGAKPRLG 465
Cdd:PRK14959 401 gtqgpqGTAPAAGMTPSSAApATPAPSAAPSPRVPwddAPPAPPRSGIPPRPAPRMPEASPVpgapDSVASASDAPPTLG 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 466 SMlEQGSPLVVSADRLEIGF--------PEGAFALASLRDSDSQAA---LKELARQFFLAEPVLVMRPLAPDAAEAPPNL 534
Cdd:PRK14959 481 DP-SDTAEHTPSGPRTWDGFlefcqgrnGQGGRLATVLRQATPEHAdgrLRLATMSSVQYERLTDAATETTLAGLVRDYF 559
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 78195867 535 LEKKRVEKEQQQTV------LKQAATSHPAVADALDVFGGTLAEVEPL 576
Cdd:PRK14959 560 GDACRVEVLPPTRVrrteaeLRKEAEAHPAVQLLKEEMGACILKCTPL 607
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
1-363 |
4.89e-106 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 323.30 E-value: 4.89e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:PRK14961 1 MNYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
Cdd:PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Cdd:PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTDLLdLSEAELATLRQQAE 320
Cdd:PRK14961 241 LGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTI-FIKNYKNQIQKIAQ 319
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 78195867 321 SVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAP 363
Cdd:PRK14961 320 NNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAINAIT 362
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
1-531 |
6.54e-103 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 329.50 E-value: 6.54e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:PRK07003 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
Cdd:PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Cdd:PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 241 LGVVDRRL---LLDATAAVFGRdtrtvlDIVARVDEFGYNMRQFCGELIDhLRNLL--ILKAVGDGTDLLDlSEAELATL 315
Cdd:PRK07003 241 LGALDQTYmvrLLDALAAGDGP------EILAVADEMALRSLSFSTALQD-LASLLhrIAWAQFAPASVLD-EWPEAADL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 316 RQQAESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAVpvdqllerlnkiEEGSGGGVADARAQWRAT 395
Cdd:PRK07003 313 RRFAELLSPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAFEPAV------------TGGGAPGGGVPARVAGAV 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 396 PPAPAGSPTPARAPERTAATPPPRPAERQAAPSAPAPR---REEAKPVSEPRRTGDSWADFVALVKGAKPRLGSMLEQGS 472
Cdd:PRK07003 381 PAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAaatRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASAD 460
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 78195867 473 PLVVSADRLEIGFPEGAFALASLRDSDSQAALKELARQFFLAEPVLVMRPLAPDAAEAP 531
Cdd:PRK07003 461 SRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASRE 519
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
6-267 |
1.70e-102 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 318.65 E-value: 1.70e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 6 LARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEITAG 85
Cdd:PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 86 TAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165
Cdd:PRK14964 83 NHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 166 ILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSLLGVVD 245
Cdd:PRK14964 163 IISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCVD 242
|
250 260
....*....|....*....|..
gi 78195867 246 RRLLLDATAAVFGRDTRTVLDI 267
Cdd:PRK14964 243 KHILEDLVEAILLGDAQSALNV 264
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
5-317 |
4.76e-102 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 316.71 E-value: 4.76e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 5 VLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEITA 84
Cdd:PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 85 GTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164
Cdd:PRK14962 83 GTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 165 TILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSLLGVV 244
Cdd:PRK14962 163 TIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLI 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 78195867 245 DRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDhlrNLLILKAVGDGTDLLDLSEAELATLRQ 317
Cdd:PRK14962 243 PIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIE---DLVEDLERERANDIIQVSRQLLNILRE 312
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
3-448 |
1.12e-101 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 323.15 E-value: 1.12e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 3 YLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEI 82
Cdd:PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 83 TAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162
Cdd:PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 163 PITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSLLG 242
Cdd:PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 243 VVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTdlLDLSEAELATLRQQAESV 322
Cdd:PRK14960 242 LIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELG--LKYSEEINAKILQLSKLI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 323 PLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAVPVDQLLERLNKIEEGSGGGVADARAQWRATPPAPAGS 402
Cdd:PRK14960 320 SAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAFRPLAPNEILVSEPVQQNGQAEVGLNSQAQTAQEITPVSAVQ 399
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 78195867 403 PTPARA-PERTAATPPPRPAERQAAPSAPAPRRE-EAKPVSEPRRTGD 448
Cdd:PRK14960 400 PVEVISqPAMVEPEPEPEPEPEPEPEPEPEPEPEpEPEPEPEPQPNQD 447
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
3-376 |
1.96e-99 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 306.42 E-value: 1.96e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 3 YLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEpcnvcpactei 82
Cdd:PRK14970 4 FVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPN----------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 83 tAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162
Cdd:PRK14970 73 -EDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 163 PITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSLLG 242
Cdd:PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLN 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 243 VVDRRLLLDATAAVFGRDTRTVL----DIVARvdefGYNMRQFCGELIDHLRNLLILKAVGDGTdLLDLSEAELATLRQQ 318
Cdd:PRK14970 232 ILDYDTYINVTDLILENKIPELLlafnEILRK----GFDGHHFIAGLASHFRDLMVSKTPATIA-LLEVGEQAKKRYEVQ 306
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 78195867 319 AESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATL-APAVPVDQLLERLNK 376
Cdd:PRK14970 307 SQKVSQSFLLSGIDIANDCDLKYKLSKNQRLLVELALMQLASInFDGISAKKKLSDLKK 365
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
1-315 |
5.15e-99 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 313.32 E-value: 5.15e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:PRK05896 1 MSEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
Cdd:PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Cdd:PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKT 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 78195867 241 LGVVDRRLLLDATAAVFGRDtrtVLDIVARVDEF---GYNMRQFCGELIDHLRNLLILKAVGDGTDLLDLSEAELATL 315
Cdd:PRK05896 241 FGLVDNNKKINLIELIQKND---IEELRNLINELeskGINFEAFCRDLINLLIDLLVYQKTKNINLLKKLSKEQLKTL 315
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
5-429 |
2.91e-96 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 302.25 E-value: 2.91e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 5 VLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEITA 84
Cdd:PRK14956 7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 85 GTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164
Cdd:PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 165 TILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSLLGVV 244
Cdd:PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYH 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 245 DRRLLLDATAAVFGRDTRT-VLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTDLLDLSEAELATLRQQAESVP 323
Cdd:PRK14956 247 GIEFLTSFIKSLIDPDNHSkSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPKEDLQKMKSDFENVD 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 324 LDDL-----------QRHLTVLLRADGELG---HTSFPRLVLEMALVKMATLapavpVDQLLErLNKIEEGSGGGVADAR 389
Cdd:PRK14956 327 SSKLnflsgklfeiyEKIKTIRLRNSFEIKvftEIQIKKLVEELTYPSLAGL-----LDKINH-LILMVQGSKNIPEDVE 400
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 78195867 390 -AQWRATPPAPAGSPTPARAPERTA-----------------ATPPPRPAERQAAPSA 429
Cdd:PRK14956 401 pVKKISTPPPLQQEASKKKDPTTSDqklnsqfesnqqdsnldNNPLPSKSESQSEPPS 458
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
6-522 |
3.49e-93 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 294.83 E-value: 3.49e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 6 LARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCeQGMSPEPCNVCPACTEITAG 85
Cdd:PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC-SGEDPKPCGECESCLAVRRG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 86 TAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165
Cdd:PRK14963 83 AHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 166 ILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFcGDQVRDEEVVSLLGVVD 245
Cdd:PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL-GTPVTRKQVEEALGLPP 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 246 RRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTDLLDLSEAELATLR-----QQAE 320
Cdd:PRK14963 242 QERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPRLEGAEPRLLAAMtaldeQMER 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 321 SVPLDDLQRHLTVLLRADGELGHTSFPRLVlemalvkmATLAPAVPVDQLLERLNKIEEGSGGGVADARAqwratPPAPA 400
Cdd:PRK14963 322 FARRSDALSLELALLHALLALGGAPSEGVA--------AVAPPAPAPADLTQRLNRLEKEVRSLRSAPTA-----AATAA 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 401 GSPTPARAPertAATPPPRPAERQAAPSAPAPrreeaKPVSEPRRTGDSWADFVAlvkGAKPRLGSMLEQGSPlVVSADR 480
Cdd:PRK14963 389 GAPLPDFDP---RPRGPPAPEPARSAEAPPLV-----APAAAPAGLALRWRDVLA---ALKMQLRAFLREARP-HVEEGY 456
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 78195867 481 LEIGFPEGAfALASLRDSDSQAALKELARQFFLAEPVLVMRP 522
Cdd:PRK14963 457 VSLTFPERA-SFHYKQAQKKLAELAALVREVFGPETVELILP 497
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
1-268 |
9.67e-92 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 292.37 E-value: 9.67e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:PRK14957 1 MSYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
Cdd:PRK14957 81 AINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Cdd:PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQM 240
|
250 260
....*....|....*....|....*...
gi 78195867 241 LGVVDRRLLLDATAAVFGRDTRTVLDIV 268
Cdd:PRK14957 241 LGIIDSEEVYSIINAIIDNDPKAILPAI 268
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
1-364 |
8.23e-91 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 288.94 E-value: 8.23e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACT 80
Cdd:PRK14958 1 MAHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
Cdd:PRK14958 81 EIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Cdd:PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 241 LGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGtdlldLSEAELATLRQQAE 320
Cdd:PRK14958 241 LGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEA-----LIENDSEQLRQLAK 315
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 78195867 321 SVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPA 364
Cdd:PRK14958 316 LLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAFYPS 359
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
3-287 |
2.42e-85 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 274.43 E-value: 2.42e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 3 YLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPE----PCNVCPA 78
Cdd:PRK06645 8 YIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENttikTCEQCTN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 79 CTEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158
Cdd:PRK06645 88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 159 PHKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFC---GDQVRDE 235
Cdd:PRK06645 168 VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSaksDNIISPQ 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 78195867 236 EVVSLLGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELID 287
Cdd:PRK06645 248 VINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSD 299
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
20-179 |
2.13e-52 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 176.25 E-value: 2.13e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 20 GQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEITAGTAVDVLEIDGASNT 99
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDLPCGQCRSCRRIESGNHPDLVIIEPEGQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 100 -GVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRI 178
Cdd:pfam13177 81 iKIDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKPL 160
|
.
gi 78195867 179 P 179
Cdd:pfam13177 161 S 161
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
21-361 |
2.38e-50 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 175.55 E-value: 2.38e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 21 QEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPaCTEITAGTAVDVLEI--DGASN 98
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGKACGQCH-SRLMAAGNHPDLLELnpEEKSD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 99 T-GVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRR 177
Cdd:COG0470 80 QiGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 178 IPLGKVVGRLRhivdQEGiaISDASLTMVARKGDGSMRDSLSVLdQVLAFcgdqvrdeevvsllgvvdRRLLLDATAAVF 257
Cdd:COG0470 160 PSEEEALAWLR----EEG--VDEDALEAILRLAGGDPRAAINLL-QALAG------------------RKELLEDLAALL 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 258 GRDTRtvLDIVARVDEfgYNMRQFCGELIDHLRNLLilkavgdgtdLLDLSEAELATLRQQaesvplddlqrhltvLLRA 337
Cdd:COG0470 215 SRDRA--LELLDALLK--AEALELLDWLLKWLLDNL----------PLEYAGEDLARAYEA---------------LSEA 265
|
330 340
....*....|....*....|....
gi 78195867 338 DGELGHTSFPRLVLEMALVKMATL 361
Cdd:COG0470 266 DRRLGRYANDRLLLEALLAKLGRL 289
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
26-177 |
1.73e-46 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 161.64 E-value: 1.73e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 26 QTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEITAGTAVDVLEI--DGASnTGVDD 103
Cdd:TIGR00678 2 QQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGGGEPCGECHSCRLIEAGNHPDLHRLepEGQS-IKVDQ 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 78195867 104 IRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRR 177
Cdd:TIGR00678 81 VRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPP 154
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
21-203 |
4.63e-39 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 145.84 E-value: 4.63e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 21 QEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEITAGTAVDVLEI--DGASn 98
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVapDGQS- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 99 TGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRI 178
Cdd:PRK08058 90 IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPL 169
|
170 180
....*....|....*....|....*
gi 78195867 179 PLGKVVGRLrhivDQEGIAISDASL 203
Cdd:PRK08058 170 PPESLIQRL----QEEGISESLATL 190
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
15-171 |
1.04e-26 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 112.31 E-value: 1.04e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 15 FSDLTGQEHVSQTLQNAIDSGR---------IAHAFLFTGARGVGKTSSARILAKALTCEQGMSPePCNVCPACTEITAG 85
Cdd:PRK07940 4 WDDLVGQEAVVAELRAAARAARadvaaagsgMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEP-GCGECRACRTVLAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 86 TAVDVLEI--DGASnTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163
Cdd:PRK07940 83 THPDVRVVapEGLS-IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVL 161
|
....*...
gi 78195867 164 ITILSRCQ 171
Cdd:PRK07940 162 PTIRSRCR 169
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
9-300 |
6.36e-25 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 105.84 E-value: 6.36e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 9 KWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHaFLFTGARGVGKTSSARILAKALTCEqgmsPEPCNVcpacTEITAGTAV 88
Cdd:PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARELYGD----PWENNF----TEFNVADFF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 89 D--------------VLEIDGASNTGVDDI--RELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKF 152
Cdd:PRK12402 79 DqgkkylvedprfahFLGTDKRIRSSKIDNfkHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 153 IFATTEPHKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLdQVLAFCGDQV 232
Cdd:PRK12402 159 IIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTL-QTAALAAGEI 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 78195867 233 RDEEVVSLLGVVDRR-----LLLDATAAVFgRDTRTVLDivARVDEFGYNmrqfCGELIDHLRNLLILKAVGD 300
Cdd:PRK12402 238 TMEAAYEALGDVGTDeviesLLDAAEAGDF-TDARKTLD--DLLIDEGLS----GGEVLEELLRVARSRYRGD 303
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
1-238 |
1.19e-24 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 104.95 E-value: 1.19e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 1 MSYLVLARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHaFLFTGARGVGKTSSARILAKALTCE---QGMspepcnvcp 77
Cdd:PRK00440 2 MMEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALARELYGEdwrENF--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 78 acteitagtavdvLEIDGASNTGVDDIRElreNVKYLpSRLR------YKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151
Cdd:PRK00440 72 -------------LELNASDERGIDVIRN---KIKEF-ARTApvggapFKIIFLDEADNLTSDAQQALRRTMEMYSQNTR 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 152 FIFATTEPHKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLdQVLAFCGDQ 231
Cdd:PRK00440 135 FILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL-QAAAATGKE 213
|
....*..
gi 78195867 232 VrDEEVV 238
Cdd:PRK00440 214 V-TEEAV 219
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
26-175 |
1.51e-24 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 104.78 E-value: 1.51e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 26 QTLQNAI-DSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEITAGTAVD--VLEIDGASNT-GV 101
Cdd:PRK05707 9 QSLWQQLaGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDnfVLEPEEADKTiKV 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 78195867 102 DDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDF 175
Cdd:PRK05707 89 DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
15-202 |
2.58e-22 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 97.66 E-value: 2.58e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 15 FSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEqgmspEPCNVCPACtEITAGTAVDVLEI- 93
Cdd:PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQ-----GSPSKNIRR-RLEEGNHPDLLWVe 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 94 ------------DGASNTGV----------DDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVk 151
Cdd:PRK07399 77 ptyqhqgklitaSEAEEAGLkrkappqirlEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGT- 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 78195867 152 FIFATTEPHKVPITILSRCQRFDFRRIP---LGKVVGRL-----RHIVDQEGIAISDAS 202
Cdd:PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSdeqLEQVLKRLgdeeiLNINFPELLALAQGS 214
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
178-242 |
9.39e-22 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 88.72 E-value: 9.39e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 78195867 178 IPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSLLG 242
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
22-171 |
1.76e-21 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 95.57 E-value: 1.76e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 22 EHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEITAGTAVDVLEIDGASNT-- 99
Cdd:PRK06871 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKdi 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 78195867 100 GVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQ 171
Cdd:PRK06871 88 GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
23-173 |
8.59e-21 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 93.78 E-value: 8.59e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 23 HVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSP-EPCNVCPACTEITAGTAVDVLEIDGASN--- 98
Cdd:PRK08699 6 HQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGhKPCGECMSCHLFGQGSHPDFYEITPLSDepe 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 99 -------TGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQ 171
Cdd:PRK08699 86 ngrkllqIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCR 165
|
..
gi 78195867 172 RF 173
Cdd:PRK08699 166 KM 167
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
6-238 |
6.98e-20 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 92.07 E-value: 6.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 6 LARKWRPQTFSDLTGQEHV---SQTLQNAIDSGRIAHAFLFtGARGVGKTSSARILAKALTCEqgmspepcnvcpactei 82
Cdd:PRK13342 2 LAERMRPKTLDEVVGQEHLlgpGKPLRRMIEAGRLSSMILW-GPPGTGKTTLARIIAGATDAP----------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 83 tagtavdVLEIDgASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEppPHVKFIFATTE-P-H 160
Cdd:PRK13342 64 -------FEALS-AVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTEnPsF 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 161 KVPITILSRCQRFDFRRIP---LGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFcgDQVRDEEV 237
Cdd:PRK13342 134 EVNPALLSRAQVFELKPLSeedIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG--VDSITLEL 211
|
.
gi 78195867 238 V 238
Cdd:PRK13342 212 L 212
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
21-203 |
2.94e-19 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 88.54 E-value: 2.94e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 21 QEHVSQTLQNAIDSGRIAHAFLFTGarGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEITAGTAVDVLEIDGASNT- 99
Cdd:PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVi 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 100 GVDDIRELRENVkylpSRLRY----KIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDF 175
Cdd:PRK07276 85 KTDTIRELVKNF----SQSGYegkqQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHF 160
|
170 180
....*....|....*....|....*...
gi 78195867 176 RriplgKVVGRLRHIVDQEGIAISDASL 203
Cdd:PRK07276 161 P-----KNEAYLIQLLEQKGLLKTQAEL 183
|
|
| DNA_pol3_gamma3 |
pfam12169 |
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, ... |
232-374 |
8.01e-19 |
|
DNA polymerase III subunits gamma and tau domain III; This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau.
Pssm-ID: 432379 [Multi-domain] Cd Length: 143 Bit Score: 83.09 E-value: 8.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 232 VRDEEVVSLLGVVDRRLLLDATAAVFGRDTRTVLDIVARVDEFGYNMRQFCGELIDHLRNLLILKAVGDGTDLLDLSEAE 311
Cdd:pfam12169 1 VTAAQVRDMLGLADRGRVLDLLEALLEGDAAAALAELRDQYDAGADPVVVLRDLLELIHNLTRLKVAPDAADDLLLPEEE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 78195867 312 LATLRQQAESVPLDDLQRHLTVLLRADGELGHTSFPRLVLEMALVKMATLAPAVPVDQLLERL 374
Cdd:pfam12169 81 RARLAELAEKLSPEVLHRLWQMLLKGIEEVPNAPDPRQAAEMVLLRLAYAASLPPPEELLRRL 143
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
9-203 |
1.46e-17 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 83.89 E-value: 1.46e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 9 KWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILakaltceqgmspepcnvcpaCTEITAgtav 88
Cdd:PHA02544 14 KYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKAL--------------------CNEVGA---- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 89 DVLEIDGASNtGVDDIR-ELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTL-EEPPPHVKFIFATTEPHKVPITI 166
Cdd:PHA02544 70 EVLFVNGSDC-RIDFVRnRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFmEAYSKNCSFIITANNKNGIIEPL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 78195867 167 LSRCQRFDFR------RIPLGK-VVGRLRHIVDQEGIAISDASL 203
Cdd:PHA02544 149 RSRCRVIDFGvptkeeQIEMMKqMIVRCKGILEAEGVEVDMKVL 192
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
12-218 |
2.86e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 83.55 E-value: 2.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 12 PQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILA--------KALTCEQGMSPEPCNvcPACTEIT 83
Cdd:PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLAnhilshpdPAEAPETLADPDPAS--PVWRQIA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 84 AGTAVDVLEI-------DGASNTG--VDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIF 154
Cdd:PRK09112 97 QGAHPNLLHItrpfdekTGKFKTAitVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 78195867 155 ATTEPHKVPITILSRCQRFDFRriPLGkvVGRLRHIVDQEGI--AISDASLTMVARKGDGSMRDSL 218
Cdd:PRK09112 177 ISHSSGRLLPTIRSRCQPISLK--PLD--DDELKKALSHLGSsqGSDGEITEALLQRSKGSVRKAL 238
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
11-269 |
5.49e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 82.77 E-value: 5.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 11 RPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKAL--TCEQGMSPEPCNVC--------PACT 80
Cdd:PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLlaTPPPGGDGAVPPPTslaidpdhPVAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 81 EITAGTAVDVLEIDGASNTG---------VDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151
Cdd:PRK07471 94 RIAAGAHGGLLTLERSWNEKgkrlrtvitVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 152 FIFATTEPHKVPITILSRCQRFDFRRIPLGKVVGRLrhivDQEGIAISDASLTMVARKGDGSMRDSLSVLDQ-VLAFCGD 230
Cdd:PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDAL----AAAGPDLPDDPRAALAALAEGSVGRALRLAGGdGLALYRR 249
|
250 260 270
....*....|....*....|....*....|....*....
gi 78195867 231 QVrdeEVVSLLGVVDRRLLLDATAAVFGRDTRTVLDIVA 269
Cdd:PRK07471 250 LT---ALLDTLPRLDRRALHALADAAAGRDRAARFALFL 285
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
35-170 |
6.53e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 82.04 E-value: 6.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 35 GRIAHAFLFTGARGVGKTSSARILAKALTCEQGMSPEPCNVCPACTEITAGTAVD--VLEID-GASNTGVDDIRELRENV 111
Cdd:PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDyyTLTPEkGKSSLGVDAVREVTEKL 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 112 kYLPSRLR-YKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRC 170
Cdd:PRK07993 101 -YEHARLGgAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
24-173 |
1.48e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 81.00 E-value: 1.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 24 VSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCeQGMSPEPCNVCPACTEITAGTAVDVL----EIDGASNT 99
Cdd:PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLC-QNYQSEACGFCHSCELMQSGNHPDLHvikpEKEGKSIT 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 78195867 100 gVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRF 173
Cdd:PRK06090 90 -VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
21-189 |
2.36e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 80.39 E-value: 2.36e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 21 QEHVSQTLQnAIDSGRIAHAFLFTGARGVGKTSSARILAKALTceqGMSPEPCNVCPACTEITAGTAVDVLEIDGASN-T 99
Cdd:PRK08769 10 QRAYDQTVA-ALDAGRLGHGLLICGPEGLGKRAVALALAEHVL---ASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNrT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 100 G--------VDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQ 171
Cdd:PRK08769 86 GdklrteivIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQ 165
|
170
....*....|....*...
gi 78195867 172 RFDFRRIPLGKVVGRLRH 189
Cdd:PRK08769 166 RLEFKLPPAHEALAWLLA 183
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
15-178 |
3.63e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 79.69 E-value: 3.63e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 15 FSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILA-KALTCEQGMSpepcnvcpacteitagtAVDVLE- 92
Cdd:PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIAlKILGKSQQRE-----------------YVDIIEf 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 93 -IDGASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQ 171
Cdd:PRK05564 66 kPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145
|
....*..
gi 78195867 172 RFDFRRI 178
Cdd:PRK05564 146 IYKLNRL 152
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
36-173 |
3.73e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 80.19 E-value: 3.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 36 RIAHAFLFTGARGVGKTSSARILAKALTCEqgmSP----EPCNVCPACT---------------EITAGTAVDVLEIDGA 96
Cdd:PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCE---TPqpdgEPCGTCAACNwfaqgnhpdyrivrpEALAAEAPGAADEAKE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 97 SNTG--------------VDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162
Cdd:PRK06964 96 ADADeggkktkapskeikIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRL 175
|
170
....*....|.
gi 78195867 163 PITILSRCQRF 173
Cdd:PRK06964 176 LPTILSRCRQF 186
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
9-273 |
4.33e-14 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 74.96 E-value: 4.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 9 KWRPQTFSDLTGQEHVSQTLQNAIDS---GRIAHAFLFTGARGVGKTSSARILAKALtceqgmspepcnvcpacteitag 85
Cdd:PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESwlkGKPKKALLLYGPPGVGKTSLAHALANDY----------------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 86 tAVDVLEIDgASN--TGvDDIRELREN---VKYLPSRlRYKIFIIDEVHMLSTNA----FNALLKTLEEPPPHVkfIFAT 156
Cdd:PRK04195 64 -GWEVIELN-ASDqrTA-DVIERVAGEaatSGSLFGA-RRKLILLDEVDGIHGNEdrggARAILELIKKAKQPI--ILTA 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 157 TEPHKVPI-TILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLdQVLAfCGDQVRDE 235
Cdd:PRK04195 138 NDPYDPSLrELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDL-QAIA-EGYGKLTL 215
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 78195867 236 EVVSLLGVVDRRL-LLDATAAVF-GRDTRTVLDIVARVDE 273
Cdd:PRK04195 216 EDVKTLGRRDREEsIFDALDAVFkARNADQALEASYDVDE 255
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
9-221 |
6.00e-14 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 72.84 E-value: 6.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 9 KWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHaFLFTGARGVGKTSSARILAKALtceqgmspepcnVCPACTEItagtav 88
Cdd:PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARDGNMPN-LILSGPPGTGKTTSILALAHEL------------LGPNYKEA------ 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 89 dVLEIDGASNTGVDDIRE----LRENVKYLPSRlRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164
Cdd:PLN03025 67 -VLELNASDDRGIDVVRNkikmFAQKKVTLPPG-RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIE 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 78195867 165 TILSRCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVL 221
Cdd:PLN03025 145 PIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNL 201
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
6-250 |
2.36e-13 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 72.40 E-value: 2.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 6 LARKWRPQTFSDLTGQEHV---SQTLQNAIDSGRIaHAFLFTGARGVGKTSSARILAKALtceqGMSPEPCNvcpactei 82
Cdd:COG2256 15 LAERMRPRTLDEVVGQEHLlgpGKPLRRAIEAGRL-SSMILWGPPGTGKTTLARLIANAT----DAEFVALS-------- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 83 tagtavdvleidgASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHmlstnAFN-----ALLktleeppPHV-----KF 152
Cdd:COG2256 82 -------------AVTSGVKDIREVIEEARERRAYGRRTILFVDEIH-----RFNkaqqdALL-------PHVedgtiTL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 153 IFATTE-P-HKVPITILSRCQRFDFRRIP---LGKVVGRLrhIVDQE------GIAISDASLTMVARKGDGSMRDSLSVL 221
Cdd:COG2256 137 IGATTEnPsFEVNSALLSRCRVFVLKPLSeedLEQLLERA--LADDErglggyKLELDDEALEALARLADGDARRALNAL 214
|
250 260 270
....*....|....*....|....*....|..
gi 78195867 222 DQVLAFCGDQVR---DEEVVSllGVVDRRLLL 250
Cdd:COG2256 215 ELAVLSAPPDGVieiTLELVE--EALQRRALR 244
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
120-178 |
3.33e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 70.52 E-value: 3.33e-13
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 78195867 120 YKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRI 178
Cdd:PRK07132 91 KKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
91-237 |
4.11e-13 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 72.56 E-value: 4.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 91 LEIDGASNTGVDDIRE-LRENVKYLP-SRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILS 168
Cdd:PRK04132 600 LELNASDERGINVIREkVKEFARTKPiGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 78195867 169 RCQRFDFRRIPLGKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLdQVLAFCGDQVRDEEV 237
Cdd:PRK04132 680 RCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINIL-QAAAALDDKITDENV 747
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
60-173 |
5.62e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 69.09 E-value: 5.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 60 KALTCEQGMSPepCNVCPACTEITAGTAVDVLEIdgasNTGVDDIRelRENVKYLPSRLRY--------KIFIIDEVHML 131
Cdd:PRK05818 29 TSIVCTKANGF--CKTCESCLKILNGKYNDFYLI----FDQKNPIK--KEDALSIINKLNRpsvesngkKIYIIYGIEKL 100
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 78195867 132 STNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRF 173
Cdd:PRK05818 101 NKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQY 142
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
105-197 |
7.01e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 69.44 E-value: 7.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 105 RELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFdfrRIPLGKvv 184
Cdd:PRK05917 81 RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSI---HIPMEE-- 155
|
90
....*....|...
gi 78195867 185 grlRHIVDQEGIA 197
Cdd:PRK05917 156 ---KTLVSKEDIA 165
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
20-176 |
2.38e-12 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 64.86 E-value: 2.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 20 GQEHVSQTLQNAIDSGRIAHaFLFTGARGVGKTSSARILAKALTCEQgmspepcnvcpacteitagtaVDVLEIDGASNT 99
Cdd:cd00009 2 GQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANELFRPG---------------------APFLYLNASDLL 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 100 GVDDIRELRENVKYLPSRLR-----YKIFIIDEVHMLSTNAFNALLKTLEE------PPPHVKFIFATT--EPHKVPITI 166
Cdd:cd00009 60 EGLVVAELFGHFLVRLLFELaekakPGVLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATNrpLLGDLDRAL 139
|
170
....*....|.
gi 78195867 167 LSRC-QRFDFR 176
Cdd:cd00009 140 YDRLdIRIVIP 150
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
6-176 |
5.63e-08 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 55.83 E-value: 5.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 6 LARKWRPQTFSDLTGQEHV---SQTLQNAIDSGRIAHAFLFtGARGVGKTSSARILAKAltceqgmspepcnvcpactei 82
Cdd:PRK13341 18 LADRLRPRTLEEFVGQDHIlgeGRLLRRAIKADRVGSLILY-GPPGVGKTTLARIIANH--------------------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 83 tagTAVDVLEIdgasNTGVDDIRELRENVKYLPSRLRY----KIFIIDEVHMLSTNAFNALLktleeppPHVK-----FI 153
Cdd:PRK13341 76 ---TRAHFSSL----NAVLAGVKDLRAEVDRAKERLERhgkrTILFIDEVHRFNKAQQDALL-------PWVEngtitLI 141
|
170 180
....*....|....*....|....*
gi 78195867 154 FATTE-PH-KVPITILSRCQRFDFR 176
Cdd:PRK13341 142 GATTEnPYfEVNKALVSRSRLFRLK 166
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
42-173 |
1.12e-07 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 50.67 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 42 LFTGARGVGKTSSARILAKALTCEqgmspepcnvcpaCTEITAGTAVDVLEIDGASNtgvddIRELRENVKylpsRLRYK 121
Cdd:pfam00004 2 LLYGPPGTGKTTLAKAVAKELGAP-------------FIEISGSELVSKYVGESEKR-----LRELFEAAK----KLAPC 59
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 78195867 122 IFIIDEVHMLSTN-----------AFNALLKTLEEP---PPHVKFIFATTEPHKVPITILSRCQRF 173
Cdd:pfam00004 60 VIFIDEIDALAGSrgsggdsesrrVVNQLLTELDGFtssNSKVIVIAATNRPDKLDPALLGRFDRI 125
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
121-176 |
1.79e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 51.96 E-value: 1.79e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 78195867 121 KIFIIdEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFR 176
Cdd:PRK08485 57 KIIVI-AAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRK 111
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
121-341 |
2.17e-07 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 52.95 E-value: 2.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 121 KIFIIDEVHMLS--TNAFNALLKTLEEPPPHVKFIFATTEP---HKVPITILSRCQRFDFRRIPLGKVVGRLRHIVDQEG 195
Cdd:COG1466 64 RLVIVRNAEFLKkpGEGLEALEAYLANPPPDTVLVLTAGKLdkrKKLFKALEKAGVVVECYPLKERELPAWIRQRLKAAG 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 196 IAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQ--VRDEEVVSLLGVVDRRLLLDATAAVFGRDTRTVLDIVARVDE 273
Cdd:COG1466 144 LRIDPDAAQLLAERVGGDLLALAQELEKLALYAGDGgtITLEDVEALVGDSAEFNVFDLADALLAGDAARALRILRRLLA 223
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 78195867 274 FGYNMRQFCGELIDHLRNLLILKAVGDGtdllDLSEAELAT-----------LRQQAESVPLDDLQRHLTVLLRADGEL 341
Cdd:COG1466 224 EGEEPVLILAALARQFRLLLQVKALLAQ----GKSLAEIAKelgvppfrvklALRALRRWSLERLARALQLLAEADLAL 298
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
42-178 |
7.45e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 48.91 E-value: 7.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 42 LFTGARGVGKTSSARILAKALTCEQGmspepcNVCPACTEITAGTAVDVLE-----IDGASNTGVDDIRELRENVKYlps 116
Cdd:smart00382 6 LIVGPPGSGKTTLARALARELGPPGG------GVIYIDGEDILEEVLDQLLliivgGKKASGSGELRLRLALALARK--- 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 78195867 117 rLRYKIFIIDEVHMLSTNAFNALL-------KTLEEPPPHVKFIFATTEPHKVPITILSR---CQRFDFRRI 178
Cdd:smart00382 77 -LKPDVLILDEITSLLDAEQEALLllleelrLLLLLKSEKNLTVILTTNDEKDLGPALLRrrfDRRIVLLLI 147
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
96-176 |
7.37e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 47.92 E-value: 7.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 96 ASNTGVDDIRELRENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDF 175
Cdd:PRK06581 66 AKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINV 145
|
.
gi 78195867 176 R 176
Cdd:PRK06581 146 R 146
|
|
| DUF4813 |
pfam16072 |
Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. ... |
378-432 |
9.70e-06 |
|
Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 345 and 672 amino acids in length.
Pssm-ID: 435117 [Multi-domain] Cd Length: 288 Bit Score: 47.83 E-value: 9.70e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 78195867 378 EEGSGGGVADARAQWRATPPAPAGSPTPARAPertAATPPPRPAERQAAPSAP-AP 432
Cdd:pfam16072 153 SAGSGTTVINAGGQQPAAPAAPAYPVAPAAYP---AQAPAAAPAPAPGAPQTPlAP 205
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
42-155 |
4.52e-05 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 43.48 E-value: 4.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 42 LFTGARGVGKTSSARILAKALTCEqgmspEPCNVCPACTEITAGTAV--DVLEIDGASNTGVDDIRELRENV-KYLPSRL 118
Cdd:pfam13401 9 VLTGESGTGKTTLLRRLLEQLPEV-----RDSVVFVDLPSGTSPKDLlrALLRALGLPLSGRLSKEELLAALqQLLLALA 83
|
90 100 110
....*....|....*....|....*....|....*..
gi 78195867 119 RYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFA 155
Cdd:pfam13401 84 VAVVLIIDEAQHLSLEALEELRDLLNLSSKLLQLILV 120
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
183-237 |
5.52e-05 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 41.36 E-value: 5.52e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 78195867 183 VVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLdQVLAFCGDQVRDEEV 237
Cdd:cd18140 6 IVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDL-QAAAAGGGVITEEDV 59
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
9-114 |
7.44e-05 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 45.99 E-value: 7.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 9 KWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHaFLFTGARGVGK--TSSARILAKALTCEQGMSPEpcnvcpactEITAGT 86
Cdd:PRK04132 12 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKclTGDTKVIANGELFEIGELVE---------KISNGK 81
|
90 100
....*....|....*....|....*....
gi 78195867 87 aVDVLEIDGASNTGVDDIRELRE-NVKYL 114
Cdd:PRK04132 82 -FGPTPVNGLKVLGIDEDGKLREfEVQYV 109
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
11-62 |
1.35e-04 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 44.35 E-value: 1.35e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 78195867 11 RPQTFSDLTGQEHVSQTLQNAIDSGR-----IAHAfLFTGARGVGKTSSARILAKAL 62
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKkrgeaLDHV-LLYGPPGLGKTTLANIIANEM 75
|
|
| PRK12438 |
PRK12438 |
hypothetical protein; Provisional |
370-456 |
1.95e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 171499 [Multi-domain] Cd Length: 991 Bit Score: 44.47 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 370 LLERLNKIEEGSGGGVADARAQWRATPPAPAGSP---TPARAPERTAATPPPRPAERQAAPSAPAPRREEAKPVSEPRRT 446
Cdd:PRK12438 887 LAEALDQVFGPGTGRVATAPGGDAASAPPPGAGPpapPQAVPPPRTTQPPAAPPRGPDVPPAAVAELRETLADLRSAQRS 966
|
90
....*....|
gi 78195867 447 GDSWADFVAL 456
Cdd:PRK12438 967 GDFTAYGAAL 976
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
11-62 |
3.11e-04 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 41.33 E-value: 3.11e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 78195867 11 RPQTFSDLTGQEHVSQTLQNAIDSGR-----IAHAfLFTGARGVGKTSSARILAKAL 62
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIEAAKqrgeaLDHV-LLYGPPGLGKTTLANIIANEM 57
|
|
| PHA03321 |
PHA03321 |
tegument protein VP11/12; Provisional |
394-566 |
3.20e-04 |
|
tegument protein VP11/12; Provisional
Pssm-ID: 223041 [Multi-domain] Cd Length: 694 Bit Score: 43.79 E-value: 3.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 394 ATPPAPAGSPTP--ARAPERTAATPPP-RPAERQAAPSAPAPRREEAKPVSEPRRTGDSWADfvalvkGAKPRLGSMLEQ 470
Cdd:PHA03321 405 ATELFRTGVPSEhyEASLRLLSSRQPPgAPAPRRDNDPPPPPRARPGSTPACARRARAQRAR------DAGPEYVDPLGA 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 471 GSPLVVSADRLEIgfPEGAFALASLRDSDSQAALKELARQfflAEPVLVMRPLAPDAAeAPPNLLEKKRVEKEQQQTVLK 550
Cdd:PHA03321 479 LRRLPAGAAPPPE--PAAAPSPATYYTRMGGGPPRLPPRN---RATETLRPDWGPPAA-APPEQMEDPYLEPDDDRFDRR 552
|
170 180
....*....|....*....|
gi 78195867 551 Q----AATSHPAVADALDVF 566
Cdd:PHA03321 553 DgaaaAATSHPREAPAPDDD 572
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
293-449 |
3.29e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 43.42 E-value: 3.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 293 LIL--KAVGDGTDLLDLSEAELATLRQQAESVPLddlqrhltvllradgelghTSFPRLVLEMALVKMATLAPAVPVDQL 370
Cdd:PRK06995 27 VILsnRAVDGGVEIVALADSDLAALAPPAAAAPA-------------------AAQPPPAAAPAAVSRPAAPAAEPAPWL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 371 LERLNKIEEGSGGGVADARAQWRATPPAPAGSPTPARA-PERTAATPPPRPAERQAAPSAPAPRREEAKPVSEPRRTGDS 449
Cdd:PRK06995 88 VEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAeNAARRLARAAAAAPRPRVPADAAAAVADAVKARIERIVNDT 167
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
380-460 |
6.23e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 42.96 E-value: 6.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 380 GSGGGVADARAQWRATPPAPAGSPTPARAPERTAATPPPRPAERQAAPSAPAPRREEAKPVSEPrrtGDSWADFVALVKG 459
Cdd:PRK12270 46 AAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPA---AAAVEDEVTPLRG 122
|
.
gi 78195867 460 A 460
Cdd:PRK12270 123 A 123
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
393-478 |
6.49e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.85 E-value: 6.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 393 RATPPAPAGSPTPARAPERTAATPPPRPAERQAAPSAPAPRREEAKPvsEPRRTGDSWADfVALVKGAKPRLGSMLEQGS 472
Cdd:PHA03307 339 AAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRP--TRRRARAAVAG-RARRRDATGRFPAGRPRPS 415
|
....*.
gi 78195867 473 PLVVSA 478
Cdd:PHA03307 416 PLDAGA 421
|
|
| PRK01297 |
PRK01297 |
ATP-dependent RNA helicase RhlB; Provisional |
394-445 |
7.38e-04 |
|
ATP-dependent RNA helicase RhlB; Provisional
Pssm-ID: 234938 [Multi-domain] Cd Length: 475 Bit Score: 42.21 E-value: 7.38e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 78195867 394 ATPPAPAGSPTPARAPERTAATPPPRPAERqAAPSAPAPRREEAKPvSEPRR 445
Cdd:PRK01297 14 AEQPAPAPPSPAAAPAPPPPAKTAAPATKA-AAPAAAAPRAEKPKK-DKPRR 63
|
|
| DUF6264 |
pfam19779 |
Family of unknown function (DUF6264); This family of putative integral membrane proteins is ... |
391-460 |
9.82e-04 |
|
Family of unknown function (DUF6264); This family of putative integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 179 and 218 amino acids in length.
Pssm-ID: 466182 Cd Length: 182 Bit Score: 40.33 E-value: 9.82e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 78195867 391 QW-RATPPAPAGSPTPARAPERTAATPPPRPAERQAAPSAPAPRREEAKPVSEPRRTGDSWADFVALVKGA 460
Cdd:pfam19779 13 QRaPIGDPAAAAAAAPPAAPAPAAPAPPAAPAAPPAAPPPPGAPAPGAPAAARRARRWDRIATIALLVFGL 83
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
186-237 |
9.84e-04 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 37.84 E-value: 9.84e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 78195867 186 RLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFC-GDQVRDEEV 237
Cdd:cd18133 9 RLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAALGdDGKISLDRV 61
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
380-462 |
1.65e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 380 GSGGGVADARAQWRATPPAPAGSPTPARAPERTAATPPPRPAE---RQAAPSAPAPRREEAKPVSEPRRTGDSWADFVAL 456
Cdd:PRK07764 596 GGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEasaAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGG 675
|
....*.
gi 78195867 457 VKGAKP 462
Cdd:PRK07764 676 AAPAAP 681
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
11-62 |
1.85e-03 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 40.83 E-value: 1.85e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 78195867 11 RPQTFSDLTGQEHVSQTLQNAIDSGR-----IAHAfLFTGARGVGKTSSARILAKAL 62
Cdd:COG2255 23 RPKRLDEYIGQEKVKENLKIFIEAAKkrgeaLDHV-LLYGPPGLGKTTLAHIIANEM 78
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
380-446 |
2.75e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 40.64 E-value: 2.75e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 78195867 380 GSGGGVADARAQWRATPPAPAGSPTPARAPErTAATPPPRPAERQAAPSAPAPRREEAKPVSEPRRT 446
Cdd:PRK12270 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAP-AAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAA 102
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
377-445 |
2.87e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 40.66 E-value: 2.87e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 78195867 377 IEEGSGGGVADARAQWRATPPAPAGSPTPARAPERTAATPPPRPAERQAAPSAPAPRREEAKPVSEPRR 445
Cdd:PRK12678 55 IKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPE 123
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
41-161 |
4.22e-03 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 37.66 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 41 FLFTGARGVGKTSSARILAKALtceqgmspepcnvCPACTEITAGTAvdvleidgasNTGVDDIRELRE----NVKYLPS 116
Cdd:pfam07728 2 VLLVGPPGTGKTELAERLAAAL-------------SNRPVFYVQLTR----------DTTEEDLFGRRNidpgGASWVDG 58
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 78195867 117 RLRY-----KIFIIDEVHMLSTNAFNALLKTLEE--------------PPPHVKFIFATTEPHK 161
Cdd:pfam07728 59 PLVRaaregEIAVLDEINRANPDVLNSLLSLLDErrlllpdggelvkaAPDGFRLIATMNPLDR 122
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
399-543 |
8.51e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 38.82 E-value: 8.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 399 PAGSPTPARAPERTAATPPPRPAERQAAPSA---PAPRREEAkpvsEPRRTGDSWADFVALVKGAKPRLgsmleQGSPLV 475
Cdd:PRK12727 117 PVSVPRQAPAAAPVRAASIPSPAAQALAHAAavrTAPRQEHA----LSAVPEQLFADFLTTAPVPRAPV-----QAPVVA 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 476 VSADRLEIGFPEGAFAlASLRDSDSQAALKELARQFFLAE-------PVLVMRPLAPD-------AAEAPPNLLEKKRVE 541
Cdd:PRK12727 188 APAPVPAIAAALAAHA-AYAQDDDEQLDDDGFDLDDALPQilppaalPPIVVAPAAPAalaavaaAAPAPQNDEELKQLR 266
|
..
gi 78195867 542 KE 543
Cdd:PRK12727 267 GE 268
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
380-444 |
8.64e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 39.10 E-value: 8.64e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 78195867 380 GSGGGVADARAQWRATPPAPAGSPTPARAPERTAATPPPRPAERQAAPSAPAPRREEAKPVSEPR 444
Cdd:PRK12270 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAA 103
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
367-459 |
9.51e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 38.83 E-value: 9.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 78195867 367 VDQLLERLNkieegsggGVADARAQwRATPPAPAGSPTPARAPERTAATPPPRPAERQAAPSAPAPRREEAKPVSEPRRT 446
Cdd:COG5373 30 VEELEAELA--------EAAEAASA-PAEPEPEAAAAATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
90
....*....|...
gi 78195867 447 GDSWADFVALVKG 459
Cdd:COG5373 101 PAAASSFEEWLGG 113
|
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| |
