NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|818941681|gb|JAI13634|]
View 

Decorin-like protein [Crotalus adamanteus]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 12183199)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

CATH:  3.80.10.10
Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
78-304 1.16e-23

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 100.78  E-value: 1.16e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  78 TTLLDLQNNKI*EIKDGDFKNLKSLHALILVNNKiskispgAFSPLKKLERLYLSKNNLKELPENMP--KSLQELRAHEN 155
Cdd:COG4886   74 LLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLTDLPEELAnlTNLKELDLSNN 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 156 DIVKLKKSaftglnnvivielgtnplkssgvengaFQGMKKLSYIRISDTNITSIPKGLP--VSLTELHLDGNKISKIdT 233
Cdd:COG4886  147 QLTDLPEP---------------------------LGNLTNLKSLDLSNNQLTDLPEELGnlTNLKELDLSNNQITDL-P 198

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818941681 234 DSLSELPNLAKLGLSYNRIASVENgSLTNVPHLRELHLDNNELAKVPAgLGEHKYIQVVYLHNNKIAAIGP 304
Cdd:COG4886  199 EPLGNLTNLEELDLSGNQLTDLPE-PLANLTNLETLDLSNNQLTDLPE-LGNLTNLEELDLSNNQLTDLPP 267
LRRNT smart00013
Leucine rich repeat N-terminal domain;
49-80 2.21e-13

Leucine rich repeat N-terminal domain;


:

Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 63.49  E-value: 2.21e-13
                           10        20        30
                   ....*....|....*....|....*....|..
gi 818941681    49 CPFRCQCHLRVVQCSDLGLKEVPKDLPPDTTL 80
Cdd:smart00013   2 CPAPCNCSGTAVDCSGRGLTEVPLDLPPDTTL 33
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
78-304 1.16e-23

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 100.78  E-value: 1.16e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  78 TTLLDLQNNKI*EIKDGDFKNLKSLHALILVNNKiskispgAFSPLKKLERLYLSKNNLKELPENMP--KSLQELRAHEN 155
Cdd:COG4886   74 LLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLTDLPEELAnlTNLKELDLSNN 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 156 DIVKLKKSaftglnnvivielgtnplkssgvengaFQGMKKLSYIRISDTNITSIPKGLP--VSLTELHLDGNKISKIdT 233
Cdd:COG4886  147 QLTDLPEP---------------------------LGNLTNLKSLDLSNNQLTDLPEELGnlTNLKELDLSNNQITDL-P 198

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818941681 234 DSLSELPNLAKLGLSYNRIASVENgSLTNVPHLRELHLDNNELAKVPAgLGEHKYIQVVYLHNNKIAAIGP 304
Cdd:COG4886  199 EPLGNLTNLEELDLSGNQLTDLPE-PLANLTNLETLDLSNNQLTDLPE-LGNLTNLEELDLSNNQLTDLPP 267
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
65-293 1.03e-14

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 75.50  E-value: 1.03e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  65 LGLKEVPKDLPPDTTLLDLQNNki*eikdgdfkNLKSLHALILVNnkiskispgafsplkkLERLYLSKNNLKELPENMP 144
Cdd:PRK15370 188 LGLTTIPACIPEQITTLILDNN-----------ELKSLPENLQGN----------------IKTLYANSNQLTSIPATLP 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 145 KSLQELRAHENDIVKLKKSAFTGLNNVIVIELGTNPLKSSGVEngafqgmkKLSYIRISDTNITSIPKGLPVSLTELHLD 224
Cdd:PRK15370 241 DTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLPE--------ELRYLSVYDNSIRTLPAHLPSGITHLNVQ 312

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 225 GN-------------KISKIDTDSLSEL-----PNLAKLGLSYNRIASVENgslTNVPHLRELHLDNNELAKVPAGL-GE 285
Cdd:PRK15370 313 SNsltalpetlppglKTLEAGENALTSLpaslpPELQVLDVSKNQITVLPE---TLPPTITTLDVSRNALTNLPENLpAA 389


                 ....*...
gi 818941681 286 HKYIQVVY 293
Cdd:PRK15370 390 LQIMQASR 397
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 204-277 1.15e-13

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 69.43  E-value: 1.15e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 818941681 204 DTNITSIPkGLP--VSLTELHLDGNKISKIDtdSLSELPNLAKLGLSYNRIASVENgsLTNVPHLRELHLDNNELA 277
Cdd:cd21340   33 DNKITKIE-NLEflTNLTHLYLQNNQIEKIE--NLENLVNLKKLYLGGNRISVVEG--LENLTNLEELHIENQRLP 103
LRRNT smart00013
Leucine rich repeat N-terminal domain;
49-80 2.21e-13

Leucine rich repeat N-terminal domain;


Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 63.49  E-value: 2.21e-13
                           10        20        30
                   ....*....|....*....|....*....|..
gi 818941681    49 CPFRCQCHLRVVQCSDLGLKEVPKDLPPDTTL 80
Cdd:smart00013   2 CPAPCNCSGTAVDCSGRGLTEVPLDLPPDTTL 33
LRR_8 pfam13855
Leucine rich repeat;
79-136 2.23e-11

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 58.69  E-value: 2.23e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 818941681   79 TLLDLQNNKI*EIKDGDFKNLKSLHALILVNNKISKISPGAFSPLKKLERLYLSKNNL 136
Cdd:pfam13855   4 RSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRRNT pfam01462
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 49-75 1.13e-10

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 396168 [Multi-domain]  Cd Length: 28  Bit Score: 55.71  E-value: 1.13e-10
                          10        20
                  ....*....|....*....|....*..
gi 818941681   49 CPFRCQCHLRVVQCSDLGLKEVPKDLP 75
Cdd:pfam01462   2 CPVPCHCSATVVNCSDRGLTAVPRDLP 28
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
78-304 1.16e-23

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 100.78  E-value: 1.16e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  78 TTLLDLQNNKI*EIKDGDFKNLKSLHALILVNNKiskispgAFSPLKKLERLYLSKNNLKELPENMP--KSLQELRAHEN 155
Cdd:COG4886   74 LLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLTDLPEELAnlTNLKELDLSNN 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 156 DIVKLKKSaftglnnvivielgtnplkssgvengaFQGMKKLSYIRISDTNITSIPKGLP--VSLTELHLDGNKISKIdT 233
Cdd:COG4886  147 QLTDLPEP---------------------------LGNLTNLKSLDLSNNQLTDLPEELGnlTNLKELDLSNNQITDL-P 198

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818941681 234 DSLSELPNLAKLGLSYNRIASVENgSLTNVPHLRELHLDNNELAKVPAgLGEHKYIQVVYLHNNKIAAIGP 304
Cdd:COG4886  199 EPLGNLTNLEELDLSGNQLTDLPE-PLANLTNLETLDLSNNQLTDLPE-LGNLTNLEELDLSNNQLTDLPP 267
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
83-305 1.10e-18

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 86.53  E-value: 1.10e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  83 LQNNKI*EIKDGDFKNLKSLHALILVNNKISKISPGAFSPLKKLERLYLSKNNLKELPENMPKSLQELRAHENDIVKLKK 162
Cdd:COG4886    1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 163 SAFTGLNNVIVIELGTNPLKSSGVENGAFQGMKKLSYIRISDTNITSIPKGLP--VSLTELHLDGNKISKIDtDSLSELP 240
Cdd:COG4886   81 LLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSGNQLTDLPEELAnlTNLKELDLSNNQLTDLP-EPLGNLT 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 818941681 241 NLAKLGLSYNRIASVENgSLTNVPHLRELHLDNNELAKVPAGLGEHKYIQVVYLHNNKIAAIGPN 305
Cdd:COG4886  160 NLKSLDLSNNQLTDLPE-ELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEP 223
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
65-293 1.03e-14

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 75.50  E-value: 1.03e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  65 LGLKEVPKDLPPDTTLLDLQNNki*eikdgdfkNLKSLHALILVNnkiskispgafsplkkLERLYLSKNNLKELPENMP 144
Cdd:PRK15370 188 LGLTTIPACIPEQITTLILDNN-----------ELKSLPENLQGN----------------IKTLYANSNQLTSIPATLP 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 145 KSLQELRAHENDIVKLKKSAFTGLNNVIVIELGTNPLKSSGVEngafqgmkKLSYIRISDTNITSIPKGLPVSLTELHLD 224
Cdd:PRK15370 241 DTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLPE--------ELRYLSVYDNSIRTLPAHLPSGITHLNVQ 312

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 225 GN-------------KISKIDTDSLSEL-----PNLAKLGLSYNRIASVENgslTNVPHLRELHLDNNELAKVPAGL-GE 285
Cdd:PRK15370 313 SNsltalpetlppglKTLEAGENALTSLpaslpPELQVLDVSKNQITVLPE---TLPPTITTLDVSRNALTNLPENLpAA 389


                 ....*...
gi 818941681 286 HKYIQVVY 293
Cdd:PRK15370 390 LQIMQASR 397
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
56-290 2.15e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 73.81  E-value: 2.15e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  56 HLRVVQCSDLGLKEVPKDLPPDTTL--LDLQNNKI*EIKDgDFKNLKSLHALILVNNKISKIsPGAFSPLKKLERLYLSK 133
Cdd:COG4886  160 NLKSLDLSNNQLTDLPEELGNLTNLkeLDLSNNQITDLPE-PLGNLTNLEELDLSGNQLTDL-PEPLANLTNLETLDLSN 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 134 NNLKELPE--NMPKsLQELRAHENDIVKLKKSAftGLNNVIVIELGTNPLKSSGVEN-GAFQGMKKLSYIRISDTNITSI 210
Cdd:COG4886  238 NQLTDLPElgNLTN-LEELDLSNNQLTDLPPLA--NLTNLKTLDLSNNQLTDLKLKElELLLGLNSLLLLLLLLNLLELL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 211 PKGLPVSLTELHLDGNKISKIDTDSLSELPNLAKLGLSYNRIASVENGSLTNVPHLRELHLDNNELAKVPAGLGEHKYIQ 290
Cdd:COG4886  315 ILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLL 394
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 204-277 1.15e-13

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 69.43  E-value: 1.15e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 818941681 204 DTNITSIPkGLP--VSLTELHLDGNKISKIDtdSLSELPNLAKLGLSYNRIASVENgsLTNVPHLRELHLDNNELA 277
Cdd:cd21340   33 DNKITKIE-NLEflTNLTHLYLQNNQIEKIE--NLENLVNLKKLYLGGNRISVVEG--LENLTNLEELHIENQRLP 103
LRRNT smart00013
Leucine rich repeat N-terminal domain;
49-80 2.21e-13

Leucine rich repeat N-terminal domain;


Pssm-ID: 214470 [Multi-domain]  Cd Length: 33  Bit Score: 63.49  E-value: 2.21e-13
                           10        20        30
                   ....*....|....*....|....*....|..
gi 818941681    49 CPFRCQCHLRVVQCSDLGLKEVPKDLPPDTTL 80
Cdd:smart00013   2 CPAPCNCSGTAVDCSGRGLTEVPLDLPPDTTL 33
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 79-280 3.15e-13

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 67.89  E-value: 3.15e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  79 TLLDLQNNKI*EIkdGDFKNLKSLHALILVNNKISKISpgAFSPLKKLERLYLSKNNLKELpENmpksLQELRAHEndiv 158
Cdd:cd21340    5 THLYLNDKNITKI--DNLSLCKNLKVLYLYDNKITKIE--NLEFLTNLTHLYLQNNQIEKI-EN----LENLVNLK---- 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 159 KLkksaFTGLNNVIVIElgtnplkssGVENgafqgMKKLSYIRISDTNITS---------IPKGLPVSLTELHLDGNKIS 229
Cdd:cd21340   72 KL----YLGGNRISVVE---------GLEN-----LTNLEELHIENQRLPPgekltfdprSLAALSNSLRVLNISGNNID 133

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 818941681 230 kiDTDSLSELPNLAKLGLSYNRIASVEN--GSLTNVPHLRELHLDNNELAKVP 280
Cdd:cd21340  134 --SLEPLAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRELDLTGNPVCKKP 184
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
50-267 4.28e-13

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 70.50  E-value: 4.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  50 PFRCQCHLRVVQCSDLGLKEVPKDLPPDTTLLDLQNNKI*EIKDgdfkNLKS-LHALILVNNKISKIsPGAFSplKKLER 128
Cdd:PRK15370 215 PENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPE----RLPSaLQSLDLFHNKISCL-PENLP--EELRY 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 129 LYLSKNNLKELPENMPKSLQELRAHENDIVKLKKSAFTGLNnviVIELGTNPLKSsgVENGAFQGMKKLSyirISDTNIT 208
Cdd:PRK15370 288 LSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLK---TLEAGENALTS--LPASLPPELQVLD---VSKNQIT 359

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 209 SIPKGLPVSLTELHLDGNKISKIDTDslseLP-NLAKLGLSYNRIASVENgsltNVPHLR 267
Cdd:PRK15370 360 VLPETLPPTITTLDVSRNALTNLPEN----LPaALQIMQASRNNLVRLPE----SLPHFR 411
LRR_8 pfam13855
Leucine rich repeat;
79-136 2.23e-11

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 58.69  E-value: 2.23e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 818941681   79 TLLDLQNNKI*EIKDGDFKNLKSLHALILVNNKISKISPGAFSPLKKLERLYLSKNNL 136
Cdd:pfam13855   4 RSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
LRRNT pfam01462
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ...
 49-75 1.13e-10

Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.


Pssm-ID: 396168 [Multi-domain]  Cd Length: 28  Bit Score: 55.71  E-value: 1.13e-10
                          10        20
                  ....*....|....*....|....*..
gi 818941681   49 CPFRCQCHLRVVQCSDLGLKEVPKDLP 75
Cdd:pfam01462   2 CPVPCHCSATVVNCSDRGLTAVPRDLP 28
LRR_8 pfam13855
Leucine rich repeat;
217-276 4.99e-10

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 54.84  E-value: 4.99e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  217 SLTELHLDGNKISKIDTDSLSELPNLAKLGLSYNRIASVENGSLTNVPHLRELHLDNNEL 276
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 69-296 1.88e-09

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 59.09  E-value: 1.88e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  69 EVPKDLPP--DTTLLDLQNNKI*-EIKDGdFKNLKSLHALILVNNKISKISPGAFSPLKKLERLYLSKNNLK-ELPENMP 144
Cdd:PLN00113 347 EIPKNLGKhnNLTVLDLSTNNLTgEIPEG-LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSgELPSEFT 425

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 145 KS--LQELRAHENDIVKLKKSAFTGLNNVIVIELGTNPLkSSGVENgaFQGMKKLSYIRISDTNIT-SIPKGLPV--SLT 219
Cdd:PLN00113 426 KLplVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF-FGGLPD--SFGSKRLENLDLSRNQFSgAVPRKLGSlsELM 502

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 818941681 220 ELHLDGNKISKIDTDSLSELPNLAKLGLSYNRIASVENGSLTNVPHLRELHLDNNELA-KVPAGLG-EHKYIQVVYLHN 296
Cdd:PLN00113 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSgEIPKNLGnVESLVQVNISHN 581
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 194-279 3.18e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 56.33  E-value: 3.18e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 194 MKKLSYIRISDTNITSIPK-GLPVSLTELHLDGNKISKIDtdSLSELPNLAKLGLSYNRIASVENgsLTNVPHLRELHLD 272
Cdd:cd21340    1 LKRITHLYLNDKNITKIDNlSLCKNLKVLYLYDNKITKIE--NLEFLTNLTHLYLQNNQIEKIEN--LENLVNLKKLYLG 76


                 ....*..
gi 818941681 273 NNELAKV 279
Cdd:cd21340   77 GNRISVV 83
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
57-188 5.87e-09

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 57.40  E-value: 5.87e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  57 LRVVQCSDLGLKEVPKDLPPDTTLLDLQNNKI*EIKDGDFKNLKSLHA------------------LILVNNKISkISPG 118
Cdd:PRK15370 285 LRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAgenaltslpaslppelqvLDVSKNQIT-VLPE 363

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 818941681 119 AFSPlkKLERLYLSKNNLKELPENMPKSLQELRAHENDIVKLKKS--AFTGLN---NVIVIElgTNPLKSSGVEN 188
Cdd:PRK15370 364 TLPP--TITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPESlpHFRGEGpqpTRIIVE--YNPFSERTIQN 434
LRR_8 pfam13855
Leucine rich repeat;
101-157 1.20e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 47.90  E-value: 1.20e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  101 SLHALILVNNKISKISPGAFSPLKKLERLYLSKNNLKELPENM---PKSLQELRAHENDI 157
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAfsgLPSLRYLDLSGNRL 61
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 69-341 2.82e-07

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 52.54  E-value: 2.82e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  69 EVPKDLPPDTTL--LDLQNNKI*EIKDGDFKNLKSLHALILVNNKISKISPGAFSPLKKLERLYLSKNNLKelpENMPKS 146
Cdd:PLN00113 155 EIPNDIGSFSSLkvLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS---GEIPYE 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 147 LQELrahendivklkksafTGLNNV-IVIELGTNPLKSSgvengaFQGMKKLSYIRISDTNIT-SIPKGL--PVSLTELH 222
Cdd:PLN00113 232 IGGL---------------TSLNHLdLVYNNLTGPIPSS------LGNLKNLQYLFLYQNKLSgPIPPSIfsLQKLISLD 290

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 223 LDGNKISKIDTDSLSELPNLAKLGLSYNRIASVENGSLTNVPHLRELHLDNNELA-KVPAGLGEHKYIQVVYLHNNKIAA 301
Cdd:PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSgEIPKNLGKHNNLTVLDLSTNNLTG 370

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 818941681 302 IGPNDFCPLGYNSKkasysgVSLFSNPVQfWEIQPSAFRC 341
Cdd:PLN00113 371 EIPEGLCSSGNLFK------LILFSNSLE-GEIPKSLGAC 403
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 79-283 3.31e-07

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 51.20  E-value: 3.31e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  79 TLLDLQNNKI*EIKDGDFKNL---KSLHALILVNNKISKiSPGAF------SPLKKLERLYLSKNNL---------KELP 140
Cdd:cd00116   84 QELDLSDNALGPDGCGVLESLlrsSSLQELKLNNNGLGD-RGLRLlakglkDLPPALEKLVLGRNRLegascealaKALR 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 141 ENmpKSLQELRAHENDI----VKLKKSAFTGLNNVIVIELGTNPLKSsgvengafQGMKKLSyirisdtnitSIPKGLPv 216
Cdd:cd00116  163 AN--RDLKELNLANNGIgdagIRALAEGLKANCNLEVLDLNNNGLTD--------EGASALA----------ETLASLK- 221

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 818941681 217 SLTELHLDGNKI-----SKIDTDSLSELPNLAKLGLSYNRIASVENGSLTNV----PHLRELHLDNNELAKVPAGL 283
Cdd:cd00116  222 SLEVLNLGDNNLtdagaAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVlaekESLLELDLRGNKFGEEGAQL 297
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 69-307 6.15e-06

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 48.31  E-value: 6.15e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  69 EVPKDLPPDTTL--LDL-QNNKI*EIKDgDFKNLKSLHALILVNNKIS-KISPGAFSpLKKLERLYLSKNNLK-ELPENM 143
Cdd:PLN00113 227 EIPYEIGGLTSLnhLDLvYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSgPIPPSIFS-LQKLISLDLSDNSLSgEIPELV 304

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 144 P--KSLQELRAHEND----------------IVKLKKSAFTG--------LNNVIVIELGTNPLkSSGVENGAFQGMKKL 197
Cdd:PLN00113 305 IqlQNLEILHLFSNNftgkipvaltslprlqVLQLWSNKFSGeipknlgkHNNLTVLDLSTNNL-TGEIPEGLCSSGNLF 383

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 198 SYIRISDTNITSIPKGLPV--SLTELHLDGNKISKIDTDSLSELPNLAKLGLSYNRIASVENGSLTNVPHLRELHLD-NN 274
Cdd:PLN00113 384 KLILFSNSLEGEIPKSLGAcrSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLArNK 463

                        250       260       270
                 ....*....|....*....|....*....|...
gi 818941681 275 ELAKVPAGLGEHKyIQVVYLHNNKIAAIGPNDF 307
Cdd:PLN00113 464 FFGGLPDSFGSKR-LENLDLSRNQFSGAVPRKL 495
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 76-310 3.51e-05

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 45.61  E-value: 3.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  76 PDTTLLDLQNNKI*-EIKDGDFKNLKSLHALILVNNKISKISPGAFSPLkkLERLYLSKNNLK-ELPENMP--KSLQELR 151
Cdd:PLN00113  93 PYIQTINLSNNQLSgPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLDLSNNMLSgEIPNDIGsfSSLKVLD 170

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 152 AHENDIVKLKKSAFTGLNNVIVIELGTNPLKSS-GVENGAfqgMKKLSYIRISDTNIT-SIPK--GLPVSLTELHLDGNK 227
Cdd:PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQiPRELGQ---MKSLKWIYLGYNNLSgEIPYeiGGLTSLNHLDLVYNN 247

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 228 ISKIDTDSLSELPNLAKLGLSYNRIASVENGSLTNVPHLRELHLDNNELA-KVPAGLGEHKYIQVVYLHNNKIAAIGPND 306
Cdd:PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSgEIPELVIQLQNLEILHLFSNNFTGKIPVA 327


                 ....
gi 818941681 307 FCPL 310
Cdd:PLN00113 328 LTSL 331
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 53-157 4.16e-05

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 44.65  E-value: 4.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  53 CQCHLRVVQCSDLGL-----KEVPKDLPPDTTL--LDLQNNKI*EikDG------DFKNLKSLHALILVNNKI----SKI 115
Cdd:cd00116  135 LPPALEKLVLGRNRLegascEALAKALRANRDLkeLNLANNGIGD--AGiralaeGLKANCNLEVLDLNNNGLtdegASA 212

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 818941681 116 SPGAFSPLKKLERLYLSKNNLK-----ELPENMPK---SLQELRAHENDI 157
Cdd:cd00116  213 LAETLASLKSLEVLNLGDNNLTdagaaALASALLSpniSLLTLSLSCNDI 262
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 61-252 5.94e-05

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 44.78  E-value: 5.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681  61 QCSDLGLKEVPKDLPPDTTL--LDLQNNKI*E------IKDGdfKNLKSLHALILVNNKISKISPGAFSPL----KKLER 128
Cdd:COG5238  191 QIGDEGIEELAEALTQNTTVttLWLKRNPIGDegaeilAEAL--KGNKSLTTLDLSNNQIGDEGVIALAEAlknnTTVET 268

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 818941681 129 LYLSKNNLKE-----LPENM--PKSLQELRAHENDI-----VKLKKsaftGL-NNVIVIELGtnpLKSSGVENgafQGMK 195
Cdd:COG5238  269 LYLSGNQIGAegaiaLAKALqgNTTLTSLDLSVNRIgdegaIALAE----GLqGNKTLHTLN---LAYNGIGA---QGAI 338

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 818941681 196 KLSYIRISDTNITSI------------------PKGLPvSLTELHLDGNKISKIDTDSL---SELPNLAKLGLSYNRI 252
Cdd:COG5238  339 ALAKALQENTTLHSLdlsdnqigdegaialakyLEGNT-TLRELNLGKNNIGKQGAEALidaLQTNRLHTLILDGNLI 415
LRR_8 pfam13855
Leucine rich repeat;
240-299 7.47e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 40.20  E-value: 7.47e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 818941681  240 PNLAKLGLSYNRIASVENGSLTNVPHLRELHLDNNELAKVPAGLGEH-KYIQVVYLHNNKI 299
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGlPSLRYLDLSGNRL 61
LRR_9 pfam14580
Leucine-rich repeat;
81-150 1.72e-04

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 41.67  E-value: 1.72e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 818941681   81 LDLQNNKI*EIkDGdFKNLKSLHALILVNNKISKISPGAFSPLKKLERLYLSKNNLKELPENMP----KSLQEL 150
Cdd:pfam14580  47 IDFSDNEIRKL-DG-FPLLRRLKTLLLNNNRICRIGEGLGEALPNLTELILTNNNLQELGDLDPlaslKKLTFL 118
LRR_8 pfam13855
Leucine rich repeat;
184-228 1.24e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 36.73  E-value: 1.24e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 818941681  184 SGVENGAFQGMKKLSYIRISDTNITSIPK----GLPvSLTELHLDGNKI 228
Cdd:pfam13855  14 TSLDDGAFKGLSNLKVLDLSNNLLTTLSPgafsGLP-SLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 218-284 1.30e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 40.57  E-value: 1.30e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 818941681 218 LTELHLDGNKISKIDTDSLSELPNLAKLGLSYNRIASVENGSLTNVPHLRELHLDNNELA-KVPAGLG 284
Cdd:PLN03150 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSgRVPAALG 511
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 100-162 2.96e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 38.61  E-value: 2.96e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 818941681 100 KSLHALILVNNKISKISPgaFSPLKKLERLYLSKNNLKELPE------NMPkSLQELRAHENDIVKLKK 162
Cdd:cd21340  120 NSLRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDLEElldllsSWP-SLRELDLTGNPVCKKPK 185
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 100-136 3.41e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 34.91  E-value: 3.41e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 818941681  100 KSLHALILVNNKISKISPgaFSPLKKLERLYLSKNNL 136
Cdd:pfam12799   1 PNLEVLDLSNNQITDIPP--LAKLPNLETLDLSGNNK 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH