NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|81902094|sp|Q8VHI7|]
View 

RecName: Full=Dynein regulatory complex subunit 2; AltName: Full=Coiled-coil domain-containing protein 65; AltName: Full=Testis development protein NYD-SP28

Protein Classification

NYD-SP28 domain-containing protein( domain architecture ID 10632156)

NYD-SP28 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
NYD-SP28 pfam14772
Sperm tail; NYD-SP28 is expressed in a development-dependent manner, localized in ...
 26-127 1.25e-24

Sperm tail; NYD-SP28 is expressed in a development-dependent manner, localized in spermatogenic cell cytoplams and human spermatozoa tail. It is post-translationally modified during sperm capacitation and ultimately contributes to the success of fertilization.


:

Pssm-ID: 464307 [Multi-domain]  Cd Length: 102  Bit Score: 97.67  E-value: 1.25e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81902094    26 QKMLADEEAAKKKERLLTQFLKDKLAKEEHNSALNLNKINTQWRTILREVKTRELHQDIEILSQTFERVVDCKDSVIKSL 105
Cdd:pfam14772   1 VAADAEEEQRRRKEEELRRFRKEKLEEEAKSSQEKFEKINQRWRSILRKNKPQELREELEEQKQACERIIDRKDKLIKEL 80

                          90       100
                  ....*....|....*....|..
gi 81902094   106 AKDLTEAEEQYAHALRSHLHNI 127
Cdd:pfam14772  81 QQELKEADEQYVKALRKQAEDI 102
 
Name Accession Description Interval E-value
NYD-SP28 pfam14772
Sperm tail; NYD-SP28 is expressed in a development-dependent manner, localized in ...
 26-127 1.25e-24

Sperm tail; NYD-SP28 is expressed in a development-dependent manner, localized in spermatogenic cell cytoplams and human spermatozoa tail. It is post-translationally modified during sperm capacitation and ultimately contributes to the success of fertilization.


Pssm-ID: 464307 [Multi-domain]  Cd Length: 102  Bit Score: 97.67  E-value: 1.25e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81902094    26 QKMLADEEAAKKKERLLTQFLKDKLAKEEHNSALNLNKINTQWRTILREVKTRELHQDIEILSQTFERVVDCKDSVIKSL 105
Cdd:pfam14772   1 VAADAEEEQRRRKEEELRRFRKEKLEEEAKSSQEKFEKINQRWRSILRKNKPQELREELEEQKQACERIIDRKDKLIKEL 80

                          90       100
                  ....*....|....*....|..
gi 81902094   106 AKDLTEAEEQYAHALRSHLHNI 127
Cdd:pfam14772  81 QQELKEADEQYVKALRKQAEDI 102
 
Name Accession Description Interval E-value
NYD-SP28 pfam14772
Sperm tail; NYD-SP28 is expressed in a development-dependent manner, localized in ...
 26-127 1.25e-24

Sperm tail; NYD-SP28 is expressed in a development-dependent manner, localized in spermatogenic cell cytoplams and human spermatozoa tail. It is post-translationally modified during sperm capacitation and ultimately contributes to the success of fertilization.


Pssm-ID: 464307 [Multi-domain]  Cd Length: 102  Bit Score: 97.67  E-value: 1.25e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81902094    26 QKMLADEEAAKKKERLLTQFLKDKLAKEEHNSALNLNKINTQWRTILREVKTRELHQDIEILSQTFERVVDCKDSVIKSL 105
Cdd:pfam14772   1 VAADAEEEQRRRKEEELRRFRKEKLEEEAKSSQEKFEKINQRWRSILRKNKPQELREELEEQKQACERIIDRKDKLIKEL 80

                          90       100
                  ....*....|....*....|..
gi 81902094   106 AKDLTEAEEQYAHALRSHLHNI 127
Cdd:pfam14772  81 QQELKEADEQYVKALRKQAEDI 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH