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Conserved domains on  [gi|84994758|ref|XP_952101|]
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histone H2A variant, putative [Theileria annulata]

Protein Classification

histone H2A( domain architecture ID 11487859)

histone H2A is a core component of the nucleosome which plays a central role in DNA double strand break (DSB) repair

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PTZ00017 PTZ00017
histone H2A; Provisional
34-151 3.07e-68

histone H2A; Provisional


:

Pssm-ID: 185399  Cd Length: 134  Bit Score: 202.67  E-value: 3.07e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84994758   34 TPMSRAARAGLQFPVGRVHRMLKSRVSADgRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 113
Cdd:PTZ00017  16 KPVSRSAKAGLQFPVGRVHRYLKKGRYAK-RVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRNDE 94
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 84994758  114 ELDTLV-KATIAGGGVIPHIHKALMNKGPQPVLVKPPKR 151
Cdd:PTZ00017  95 ELNKLLaGVTIASGGVLPNIHKVLLPKKSKPKQGKKQNK 133
 
Name Accession Description Interval E-value
PTZ00017 PTZ00017
histone H2A; Provisional
34-151 3.07e-68

histone H2A; Provisional


Pssm-ID: 185399  Cd Length: 134  Bit Score: 202.67  E-value: 3.07e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84994758   34 TPMSRAARAGLQFPVGRVHRMLKSRVSADgRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 113
Cdd:PTZ00017  16 KPVSRSAKAGLQFPVGRVHRYLKKGRYAK-RVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRNDE 94
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 84994758  114 ELDTLV-KATIAGGGVIPHIHKALMNKGPQPVLVKPPKR 151
Cdd:PTZ00017  95 ELNKLLaGVTIASGGVLPNIHKVLLPKKSKPKQGKKQNK 133
H2A cd00074
Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two ...
34-140 1.21e-54

Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.


Pssm-ID: 238029  Cd Length: 115  Bit Score: 167.51  E-value: 1.21e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84994758  34 TPMSRAARAGLQFPVGRVHRMLKSRVSAdGRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 113
Cdd:cd00074   9 KKRSRSARAGLQFPVGRIHRYLKKGRYA-ERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRNDE 87
                        90       100
                ....*....|....*....|....*...
gi 84994758 114 ELDTLVK-ATIAGGGVIPHIHKALMNKG 140
Cdd:cd00074  88 ELNKLLKgVTIASGGVLPNIHKVLLPKK 115
H2A smart00414
Histone 2A;
37-139 9.01e-53

Histone 2A;


Pssm-ID: 197711  Cd Length: 106  Bit Score: 162.50  E-value: 9.01e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84994758     37 SRAARAGLQFPVGRVHRMLKSRVSADgRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD 116
Cdd:smart00414   1 SRSARAGLQFPVGRIHRLLRKGTYAK-RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELN 79
                           90       100
                   ....*....|....*....|....
gi 84994758    117 TLVKA-TIAGGGVIPHIHKALMNK 139
Cdd:smart00414  80 KLLKGvTIAQGGVLPNIHKVLLPK 103
HTA1 COG5262
Histone H2A [Chromatin structure and dynamics];
36-139 7.81e-44

Histone H2A [Chromatin structure and dynamics];


Pssm-ID: 227587  Cd Length: 132  Bit Score: 140.77  E-value: 7.81e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84994758  36 MSRAARAGLQFPVGRVHRMLKsRVSADGRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 115
Cdd:COG5262  17 QSRSAKAGLIFPVGRVKRLLK-KGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIRNDEEL 95
                        90       100
                ....*....|....*....|....*
gi 84994758 116 DTLVK-ATIAGGGVIPHIHKALMNK 139
Cdd:COG5262  96 NKLLGdVTIAQGGVLPNINPGLLPK 120
Histone pfam00125
Core histone H2A/H2B/H3/H4;
34-112 1.53e-16

Core histone H2A/H2B/H3/H4;


Pssm-ID: 425478 [Multi-domain]  Cd Length: 127  Bit Score: 70.91  E-value: 1.53e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 84994758    34 TPMSRAARAGLQFPVGRVHRMLKSRVSADGRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 112
Cdd:pfam00125  49 KYQKSTDLLIYKLPFARVVREIVKSTKTDLRISADAVVALQEALEDYLVELFEDANLLAKHAKRVTITPKDIQLARRLR 127
 
Name Accession Description Interval E-value
PTZ00017 PTZ00017
histone H2A; Provisional
34-151 3.07e-68

histone H2A; Provisional


Pssm-ID: 185399  Cd Length: 134  Bit Score: 202.67  E-value: 3.07e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84994758   34 TPMSRAARAGLQFPVGRVHRMLKSRVSADgRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 113
Cdd:PTZ00017  16 KPVSRSAKAGLQFPVGRVHRYLKKGRYAK-RVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRNDE 94
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 84994758  114 ELDTLV-KATIAGGGVIPHIHKALMNKGPQPVLVKPPKR 151
Cdd:PTZ00017  95 ELNKLLaGVTIASGGVLPNIHKVLLPKKSKPKQGKKQNK 133
PLN00154 PLN00154
histone H2A; Provisional
35-139 1.35e-65

histone H2A; Provisional


Pssm-ID: 177756  Cd Length: 136  Bit Score: 195.93  E-value: 1.35e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84994758   35 PMSRAARAGLQFPVGRVHRMLKSRVSADGRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 114
Cdd:PLN00154  28 PTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107
                         90       100
                 ....*....|....*....|....*
gi 84994758  115 LDTLVKATIAGGGVIPHIHKALMNK 139
Cdd:PLN00154 108 LDTLIKGTIAGGGVIPHIHKSLINK 132
H2A cd00074
Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two ...
34-140 1.21e-54

Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.


Pssm-ID: 238029  Cd Length: 115  Bit Score: 167.51  E-value: 1.21e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84994758  34 TPMSRAARAGLQFPVGRVHRMLKSRVSAdGRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 113
Cdd:cd00074   9 KKRSRSARAGLQFPVGRIHRYLKKGRYA-ERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRNDE 87
                        90       100
                ....*....|....*....|....*...
gi 84994758 114 ELDTLVK-ATIAGGGVIPHIHKALMNKG 140
Cdd:cd00074  88 ELNKLLKgVTIASGGVLPNIHKVLLPKK 115
H2A smart00414
Histone 2A;
37-139 9.01e-53

Histone 2A;


Pssm-ID: 197711  Cd Length: 106  Bit Score: 162.50  E-value: 9.01e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84994758     37 SRAARAGLQFPVGRVHRMLKSRVSADgRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD 116
Cdd:smart00414   1 SRSARAGLQFPVGRIHRLLRKGTYAK-RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELN 79
                           90       100
                   ....*....|....*....|....
gi 84994758    117 TLVKA-TIAGGGVIPHIHKALMNK 139
Cdd:smart00414  80 KLLKGvTIAQGGVLPNIHKVLLPK 103
HTA1 COG5262
Histone H2A [Chromatin structure and dynamics];
36-139 7.81e-44

Histone H2A [Chromatin structure and dynamics];


Pssm-ID: 227587  Cd Length: 132  Bit Score: 140.77  E-value: 7.81e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84994758  36 MSRAARAGLQFPVGRVHRMLKsRVSADGRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 115
Cdd:COG5262  17 QSRSAKAGLIFPVGRVKRLLK-KGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIRNDEEL 95
                        90       100
                ....*....|....*....|....*
gi 84994758 116 DTLVK-ATIAGGGVIPHIHKALMNK 139
Cdd:COG5262  96 NKLLGdVTIAQGGVLPNINPGLLPK 120
PLN00157 PLN00157
histone H2A; Provisional
35-139 1.59e-37

histone H2A; Provisional


Pssm-ID: 177758  Cd Length: 132  Bit Score: 124.96  E-value: 1.59e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84994758   35 PMSRAARAGLQFPVGRVHRMLKSRVSADgRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 114
Cdd:PLN00157  16 ATSRSAKAGLQFPVGRIARYLKAGKYAT-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEE 94
                         90       100
                 ....*....|....*....|....*.
gi 84994758  115 LDTLVK-ATIAGGGVIPHIHKALMNK 139
Cdd:PLN00157  95 LSKLLGgVTIAAGGVLPNIHSVLLPK 120
PLN00156 PLN00156
histone H2AX; Provisional
36-139 8.26e-37

histone H2AX; Provisional


Pssm-ID: 215080  Cd Length: 139  Bit Score: 123.15  E-value: 8.26e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84994758   36 MSRAARAGLQFPVGRVHRMLKSRVSADgRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 115
Cdd:PLN00156  20 VSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEEL 98
                         90       100
                 ....*....|....*....|....*
gi 84994758  116 DTLVKA-TIAGGGVIPHIHKALMNK 139
Cdd:PLN00156  99 SKLLGSvTIAAGGVLPNIHQTLLPK 123
PLN00153 PLN00153
histone H2A; Provisional
36-139 1.93e-32

histone H2A; Provisional


Pssm-ID: 165721  Cd Length: 129  Bit Score: 111.73  E-value: 1.93e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84994758   36 MSRAARAGLQFPVGRVHRMLKSRVSADgRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 115
Cdd:PLN00153  15 VSRSAKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEEL 93
                         90       100
                 ....*....|....*....|....*
gi 84994758  116 DTLV-KATIAGGGVIPHIHKALMNK 139
Cdd:PLN00153  94 GKLLgEVTIASGGVLPNIHAVLLPK 118
PTZ00252 PTZ00252
histone H2A; Provisional
37-139 7.91e-23

histone H2A; Provisional


Pssm-ID: 240330  Cd Length: 134  Bit Score: 87.33  E-value: 7.91e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84994758   37 SRAARAGLQFPVGRVHRMLKsRVSADGRVGSTAAVYASAILEYLTAEVLELAGNAS--KDLKVKRITPRHLQLAIRGDEE 114
Cdd:PTZ00252  17 GRSAKAGLIFPVGRVGSLLR-RGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAaqQAKKPKRLTPRTVTLAVRHDDD 95
                         90       100
                 ....*....|....*....|....*.
gi 84994758  115 LDTLVK-ATIAGGGVIPHIHKALMNK 139
Cdd:PTZ00252  96 LGSLLKnVTLSRGGVMPSLNKALAKK 121
Histone pfam00125
Core histone H2A/H2B/H3/H4;
34-112 1.53e-16

Core histone H2A/H2B/H3/H4;


Pssm-ID: 425478 [Multi-domain]  Cd Length: 127  Bit Score: 70.91  E-value: 1.53e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 84994758    34 TPMSRAARAGLQFPVGRVHRMLKSRVSADGRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 112
Cdd:pfam00125  49 KYQKSTDLLIYKLPFARVVREIVKSTKTDLRISADAVVALQEALEDYLVELFEDANLLAKHAKRVTITPKDIQLARRLR 127
PLN00155 PLN00155
histone H2A; Provisional
36-80 5.90e-09

histone H2A; Provisional


Pssm-ID: 165723  Cd Length: 58  Bit Score: 49.32  E-value: 5.90e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 84994758   36 MSRAARAGLQFPVGRVHRMLKSRVSADgRVGSTAAVYASAILEYL 80
Cdd:PLN00155  15 VSRSAKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYL 58
Histone_H2A_C pfam16211
C-terminus of histone H2A;
113-139 3.24e-08

C-terminus of histone H2A;


Pssm-ID: 435219  Cd Length: 35  Bit Score: 46.72  E-value: 3.24e-08
                          10        20
                  ....*....|....*....|....*...
gi 84994758   113 EELDTLVK-ATIAGGGVIPHIHKALMNK 139
Cdd:pfam16211   1 EELNKLLGgVTIAQGGVLPNIHKVLLPK 28
BUR6 COG5247
Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription];
45-118 2.39e-06

Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription];


Pssm-ID: 227572  Cd Length: 113  Bit Score: 43.80  E-value: 2.39e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 84994758  45 QFPVGRVHRMLKSRVSAdGRVGSTAAVYASAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTL 118
Cdd:COG5247  23 RFPIARLKKIMQLDEDI-GKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATESDEKFDFL 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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