NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|86990458|ref|NP_032467|]
View 

kinesin-like protein KIF1B isoform a [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
4-355 0e+00

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


:

Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 659.04  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    4 ASVKVAVRVRPFNSRETSKESKCIIQMQGNSTSIINPKN-------PKEAPKSFSFDYSYWSHTsPEDPCFASQNRVYND 76
Cdd:cd01365    1 ANVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQadknnkaTREVPKSFSFDYSYWSHD-SEDPNYASQEQVYED 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   77 IGKEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGKQEesQAGIIPQLCEELFEKINDNCNEEMSYSVEVSYMEIYCERVRD 156
Cdd:cd01365   80 LGEELLQHAFEGYNVCLFAYGQTGSGKSYTMMGTQE--QPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEKVRD 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  157 LLNPK---NKGNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPE 233
Cdd:cd01365  158 LLNPKpkkNKGNLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKRHDAE 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  234 TNLSTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVSKKK--KKTDFIPYRDSVLTWLLRE 311
Cdd:cd01365  238 TNLTTEKVSKISLVDLAGSERASSTGATGDRLKEGANINKSLTTLGKVISALADMSSGKskKKSSFIPYRDSVLTWLLKE 317
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 86990458  312 NLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIKCNAVIN 355
Cdd:cd01365  318 NLGGNSKTAMIAAISPADINYEETLSTLRYADRAKKIVNRAVVN 361
Kinesin_assoc pfam16183
Kinesin-associated;
352-509 2.27e-89

Kinesin-associated;


:

Pssm-ID: 465047 [Multi-domain]  Cd Length: 177  Bit Score: 285.20  E-value: 2.27e-89
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    352 AVINEDPNAKLVRELKEEVTRLKDLLRAQGLGDIIDTSMGSLTSSPSSCSLNSQVG-------------------LTSVT 412
Cdd:pfam16183    1 AVINEDPNNKLIRELKDEVARLRDLLYAQGLGDIIDTIAHPTKKRANTPAANASAAtaamagaspspslsalssrAASVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    413 SIQERIMSTPGGEEAIERLKESEKIIAELNETWEEKLRKTEAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNLN 492
Cdd:pfam16183   81 SLHERIMFTPGSEEAIERLKETEKIIAELNETWEEKLRKTEAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNLN 160
                          170
                   ....*....|....*..
gi 86990458    493 EDPLMSECLLYYIKDGI 509
Cdd:pfam16183  161 EDPLMSECLLYYIKDGI 177
FHA_KIF1B cd22727
forkhead associated (FHA) domain found in kinesin-like protein KIF1B; KIF1B, also called Klp, ...
484-593 2.05e-78

forkhead associated (FHA) domain found in kinesin-like protein KIF1B; KIF1B, also called Klp, is a motor for anterograde transport of mitochondria. It has a microtubule plus end-directed motility. Isoform 1 mediates the transport of synaptic vesicles in neuronal cells, while isoform 2 is required for induction of neuronal apoptosis. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


:

Pssm-ID: 438779 [Multi-domain]  Cd Length: 110  Bit Score: 252.26  E-value: 2.05e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  484 KTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCLFRSERSNTGEVIVTLEPCERSETYVNG 563
Cdd:cd22727    1 KTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCIFRSERNNNGEVIVTLEPCERSETYVNG 80
                         90       100       110
                 ....*....|....*....|....*....|
gi 86990458  564 KRVAHPVQLRSGNRIIMGKNHVFRFNHPEQ 593
Cdd:cd22727   81 KRVVQPVQLRSGNRIIMGKNHVFRFNHPEQ 110
 
Name Accession Description Interval E-value
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
4-355 0e+00

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 659.04  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    4 ASVKVAVRVRPFNSRETSKESKCIIQMQGNSTSIINPKN-------PKEAPKSFSFDYSYWSHTsPEDPCFASQNRVYND 76
Cdd:cd01365    1 ANVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQadknnkaTREVPKSFSFDYSYWSHD-SEDPNYASQEQVYED 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   77 IGKEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGKQEesQAGIIPQLCEELFEKINDNCNEEMSYSVEVSYMEIYCERVRD 156
Cdd:cd01365   80 LGEELLQHAFEGYNVCLFAYGQTGSGKSYTMMGTQE--QPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEKVRD 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  157 LLNPK---NKGNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPE 233
Cdd:cd01365  158 LLNPKpkkNKGNLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKRHDAE 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  234 TNLSTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVSKKK--KKTDFIPYRDSVLTWLLRE 311
Cdd:cd01365  238 TNLTTEKVSKISLVDLAGSERASSTGATGDRLKEGANINKSLTTLGKVISALADMSSGKskKKSSFIPYRDSVLTWLLKE 317
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 86990458  312 NLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIKCNAVIN 355
Cdd:cd01365  318 NLGGNSKTAMIAAISPADINYEETLSTLRYADRAKKIVNRAVVN 361
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
5-355 7.23e-157

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 470.13  E-value: 7.23e-157
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458       5 SVKVAVRVRPFNSRETSKESKCIIQMQGNS--TSIINPKNPKEAPKSFSFDYSYwshtspeDPcFASQNRVYNDIGKEML 82
Cdd:smart00129    1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVgkTLTVRSPKNRQGEKKFTFDKVF-------DA-TASQEDVFEETAAPLV 72
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458      83 LHAFEGYNVCIFAYGQTGAGKSYTMMGkqEESQAGIIPQLCEELFEKInDNCNEEMSYSVEVSYMEIYCERVRDLLNPkN 162
Cdd:smart00129   73 DSVLEGYNATIFAYGQTGSGKTYTMIG--TPDSPGIIPRALKDLFEKI-DKREEGWQFSVKVSYLEIYNEKIRDLLNP-S 148
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458     163 KGNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPETnlSTEKVS 242
Cdd:smart00129  149 SKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSS--GSGKAS 226
                           250       260       270       280       290       300       310       320
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458     243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVSKKKkktdFIPYRDSVLTWLLRENLGGNSRTAMV 322
Cdd:smart00129  227 KLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHSKSR----HIPYRDSKLTRLLQDSLGGNSKTLMI 302
                           330       340       350
                    ....*....|....*....|....*....|...
gi 86990458     323 AALSPADINYDETLSTLRYADRAKQIKCNAVIN 355
Cdd:smart00129  303 ANVSPSSSNLEETLSTLRFASRAKEIKNKPIVN 335
Kinesin pfam00225
Kinesin motor domain;
11-348 9.71e-152

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 456.26  E-value: 9.71e-152
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458     11 RVRPFNSRETSKESKCIIQM--QGNSTSIINPKNPKEAPKSFSFDYSYWSHtspedpcfASQNRVYNDIGKEMLLHAFEG 88
Cdd:pfam00225    1 RVRPLNEREKERGSSVIVSVesVDSETVESSHLTNKNRTKTFTFDKVFDPE--------ATQEDVYEETAKPLVESVLEG 72
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458     89 YNVCIFAYGQTGAGKSYTMMGKQEesQAGIIPQLCEELFEKINDnCNEEMSYSVEVSYMEIYCERVRDLLNP--KNKGNL 166
Cdd:pfam00225   73 YNVTIFAYGQTGSGKTYTMEGSDE--QPGIIPRALEDLFDRIQK-TKERSEFSVKVSYLEIYNEKIRDLLSPsnKNKRKL 149
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    167 RVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPETNLSTeKVSKISL 246
Cdd:pfam00225  150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEESV-KTGKLNL 228
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    247 VDLAGSERADSTG-AKGTRLKEGANINKSLTTLGKVISALAEvskkkKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAAL 325
Cdd:pfam00225  229 VDLAGSERASKTGaAGGQRLKEAANINKSLSALGNVISALAD-----KKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANI 303
                          330       340
                   ....*....|....*....|...
gi 86990458    326 SPADINYDETLSTLRYADRAKQI 348
Cdd:pfam00225  304 SPSSSNYEETLSTLRFASRAKNI 326
Kinesin_assoc pfam16183
Kinesin-associated;
352-509 2.27e-89

Kinesin-associated;


Pssm-ID: 465047 [Multi-domain]  Cd Length: 177  Bit Score: 285.20  E-value: 2.27e-89
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    352 AVINEDPNAKLVRELKEEVTRLKDLLRAQGLGDIIDTSMGSLTSSPSSCSLNSQVG-------------------LTSVT 412
Cdd:pfam16183    1 AVINEDPNNKLIRELKDEVARLRDLLYAQGLGDIIDTIAHPTKKRANTPAANASAAtaamagaspspslsalssrAASVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    413 SIQERIMSTPGGEEAIERLKESEKIIAELNETWEEKLRKTEAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNLN 492
Cdd:pfam16183   81 SLHERIMFTPGSEEAIERLKETEKIIAELNETWEEKLRKTEAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNLN 160
                          170
                   ....*....|....*..
gi 86990458    493 EDPLMSECLLYYIKDGI 509
Cdd:pfam16183  161 EDPLMSECLLYYIKDGI 177
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
1-368 1.00e-80

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 275.46  E-value: 1.00e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    1 MSGASVKVAVRVRPFNSRETSKESKCIIQMQGNSTSIINpknpKEAPKSFSFDYSYWSHtspedpcfASQNRVYNDIGKE 80
Cdd:COG5059   13 LSSRNEKSVSDIKSTIRIIPGELGERLINTSKKSHVSLE----KSKEGTYAFDKVFGPS--------ATQEDVYEETIKP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   81 MLLHAFEGYNVCIFAYGQTGAGKSYTMMGkqEESQAGIIPQLCEELFEKInDNCNEEMSYSVEVSYMEIYCERVRDLLNP 160
Cdd:COG5059   81 LIDSLLLGYNCTVFAYGQTGSGKTYTMSG--TEEEPGIIPLSLKELFSKL-EDLSMTKDFAVSISYLEIYNEKIYDLLSP 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  161 KNKGnLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPETNLStek 240
Cdd:COG5059  158 NEES-LNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSET--- 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  241 vSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALaevsKKKKKTDFIPYRDSVLTWLLRENLGGNSRTA 320
Cdd:COG5059  234 -SKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINAL----GDKKKSGHIPYRESKLTRLLQDSLGGNCNTR 308
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 86990458  321 MVAALSPADINYDETLSTLRYADRAKQIK-----CNAVINEDPNAKLVRELKE 368
Cdd:COG5059  309 VICTISPSSNSFEETINTLKFASRAKSIKnkiqvNSSSDSSREIEEIKFDLSE 361
FHA_KIF1B cd22727
forkhead associated (FHA) domain found in kinesin-like protein KIF1B; KIF1B, also called Klp, ...
484-593 2.05e-78

forkhead associated (FHA) domain found in kinesin-like protein KIF1B; KIF1B, also called Klp, is a motor for anterograde transport of mitochondria. It has a microtubule plus end-directed motility. Isoform 1 mediates the transport of synaptic vesicles in neuronal cells, while isoform 2 is required for induction of neuronal apoptosis. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438779 [Multi-domain]  Cd Length: 110  Bit Score: 252.26  E-value: 2.05e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  484 KTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCLFRSERSNTGEVIVTLEPCERSETYVNG 563
Cdd:cd22727    1 KTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCIFRSERNNNGEVIVTLEPCERSETYVNG 80
                         90       100       110
                 ....*....|....*....|....*....|
gi 86990458  564 KRVAHPVQLRSGNRIIMGKNHVFRFNHPEQ 593
Cdd:cd22727   81 KRVVQPVQLRSGNRIIMGKNHVFRFNHPEQ 110
PLN03188 PLN03188
kinesin-12 family protein; Provisional
1-375 1.02e-74

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 271.42  E-value: 1.02e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458     1 MSGASVKVAVRVRPFNSREtskESKCIIQMQGNSTSIINPKnpkeapkSFSFDysywSHTSPEdpcfASQNRVYNDIGKE 80
Cdd:PLN03188   95 VSDSGVKVIVRMKPLNKGE---EGEMIVQKMSNDSLTINGQ-------TFTFD----SIADPE----STQEDIFQLVGAP 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    81 MLLHAFEGYNVCIFAYGQTGAGKSYTMMGKQ----EES----QAGIIPQLCEELFEKIND----NCNEEMSYSVEVSYME 148
Cdd:PLN03188  157 LVENCLAGFNSSVFAYGQTGSGKTYTMWGPAngllEEHlsgdQQGLTPRVFERLFARINEeqikHADRQLKYQCRCSFLE 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   149 IYCERVRDLLNPKNKgNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQK 228
Cdd:PLN03188  237 IYNEQITDLLDPSQK-NLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESR 315
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   229 KQDPETNLSTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVSKKKKKTDfIPYRDSVLTWL 308
Cdd:PLN03188  316 CKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRH-IPYRDSRLTFL 394
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 86990458   309 LRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIKCNAVINE----DPN--AKLVRELKEEVTRLKD 375
Cdd:PLN03188  395 LQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEvmqdDVNflREVIRQLRDELQRVKA 467
FHA pfam00498
FHA domain; The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.
510-578 1.31e-06

FHA domain; The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.


Pssm-ID: 459831 [Multi-domain]  Cd Length: 66  Bit Score: 46.80  E-value: 1.31e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 86990458    510 TRVGQADaerRQDIVLSGAHIKEEHCLFRSERSNTgeviVTLEPC-ERSETYVNGKRVAH-PVQLRSGNRI 578
Cdd:pfam00498    1 VTIGRSP---DCDIVLDDPSVSRRHAEIRYDGGGR----FYLEDLgSTNGTFVNGQRLGPePVRLKDGDVI 64
FHA COG1716
Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms];
505-588 5.08e-06

Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms];


Pssm-ID: 441322 [Multi-domain]  Cd Length: 96  Bit Score: 46.10  E-value: 5.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  505 IKDGITRVGQADaerRQDIVLSGAHIKEEHCLFRseRSNTGEVIVTLEpcERSETYVNGKRVAHPVQLRSGNRIIMGKnH 584
Cdd:COG1716   18 LDGGPLTIGRAP---DNDIVLDDPTVSRRHARIR--RDGGGWVLEDLG--STNGTFVNGQRVTEPAPLRDGDVIRLGK-T 89

                 ....
gi 86990458  585 VFRF 588
Cdd:COG1716   90 ELRF 93
 
Name Accession Description Interval E-value
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
4-355 0e+00

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 659.04  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    4 ASVKVAVRVRPFNSRETSKESKCIIQMQGNSTSIINPKN-------PKEAPKSFSFDYSYWSHTsPEDPCFASQNRVYND 76
Cdd:cd01365    1 ANVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQadknnkaTREVPKSFSFDYSYWSHD-SEDPNYASQEQVYED 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   77 IGKEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGKQEesQAGIIPQLCEELFEKINDNCNEEMSYSVEVSYMEIYCERVRD 156
Cdd:cd01365   80 LGEELLQHAFEGYNVCLFAYGQTGSGKSYTMMGTQE--QPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEKVRD 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  157 LLNPK---NKGNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPE 233
Cdd:cd01365  158 LLNPKpkkNKGNLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKRHDAE 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  234 TNLSTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVSKKK--KKTDFIPYRDSVLTWLLRE 311
Cdd:cd01365  238 TNLTTEKVSKISLVDLAGSERASSTGATGDRLKEGANINKSLTTLGKVISALADMSSGKskKKSSFIPYRDSVLTWLLKE 317
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 86990458  312 NLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIKCNAVIN 355
Cdd:cd01365  318 NLGGNSKTAMIAAISPADINYEETLSTLRYADRAKKIVNRAVVN 361
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
5-355 7.23e-157

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 470.13  E-value: 7.23e-157
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458       5 SVKVAVRVRPFNSRETSKESKCIIQMQGNS--TSIINPKNPKEAPKSFSFDYSYwshtspeDPcFASQNRVYNDIGKEML 82
Cdd:smart00129    1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVgkTLTVRSPKNRQGEKKFTFDKVF-------DA-TASQEDVFEETAAPLV 72
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458      83 LHAFEGYNVCIFAYGQTGAGKSYTMMGkqEESQAGIIPQLCEELFEKInDNCNEEMSYSVEVSYMEIYCERVRDLLNPkN 162
Cdd:smart00129   73 DSVLEGYNATIFAYGQTGSGKTYTMIG--TPDSPGIIPRALKDLFEKI-DKREEGWQFSVKVSYLEIYNEKIRDLLNP-S 148
                           170       180       190       200       210       220       230       240
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458     163 KGNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPETnlSTEKVS 242
Cdd:smart00129  149 SKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSS--GSGKAS 226
                           250       260       270       280       290       300       310       320
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458     243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVSKKKkktdFIPYRDSVLTWLLRENLGGNSRTAMV 322
Cdd:smart00129  227 KLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHSKSR----HIPYRDSKLTRLLQDSLGGNSKTLMI 302
                           330       340       350
                    ....*....|....*....|....*....|...
gi 86990458     323 AALSPADINYDETLSTLRYADRAKQIKCNAVIN 355
Cdd:smart00129  303 ANVSPSSSNLEETLSTLRFASRAKEIKNKPIVN 335
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
5-346 6.51e-155

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 464.81  E-value: 6.51e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    5 SVKVAVRVRPFNSRETSKESKCIIQMQGNSTSIINPKNPKEAPKSFSFDYSYWSHtspedpcfASQNRVYNDIGKEMLLH 84
Cdd:cd00106    1 NVRVAVRVRPLNGREARSAKSVISVDGGKSVVLDPPKNRVAPPKTFAFDAVFDST--------STQEEVYEGTAKPLVDS 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   85 AFEGYNVCIFAYGQTGAGKSYTMMGKQEEsQAGIIPQLCEELFEKINDNCNEEMSYSVEVSYMEIYCERVRDLLNPKNKG 164
Cdd:cd00106   73 ALEGYNGTIFAYGQTGSGKTYTMLGPDPE-QRGIIPRALEDIFERIDKRKETKSSFSVSASYLEIYNEKIYDLLSPVPKK 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  165 NLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKqdPETNLSTEKVSKI 244
Cdd:cd00106  152 PLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRN--REKSGESVTSSKL 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  245 SLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEvskkkKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAA 324
Cdd:cd00106  230 NLVDLAGSERAKKTGAEGDRLKEGGNINKSLSALGKVISALAD-----GQNKHIPYRDSKLTRLLQDSLGGNSKTIMIAC 304
                        330       340
                 ....*....|....*....|..
gi 86990458  325 LSPADINYDETLSTLRYADRAK 346
Cdd:cd00106  305 ISPSSENFEETLSTLRFASRAK 326
Kinesin pfam00225
Kinesin motor domain;
11-348 9.71e-152

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 456.26  E-value: 9.71e-152
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458     11 RVRPFNSRETSKESKCIIQM--QGNSTSIINPKNPKEAPKSFSFDYSYWSHtspedpcfASQNRVYNDIGKEMLLHAFEG 88
Cdd:pfam00225    1 RVRPLNEREKERGSSVIVSVesVDSETVESSHLTNKNRTKTFTFDKVFDPE--------ATQEDVYEETAKPLVESVLEG 72
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458     89 YNVCIFAYGQTGAGKSYTMMGKQEesQAGIIPQLCEELFEKINDnCNEEMSYSVEVSYMEIYCERVRDLLNP--KNKGNL 166
Cdd:pfam00225   73 YNVTIFAYGQTGSGKTYTMEGSDE--QPGIIPRALEDLFDRIQK-TKERSEFSVKVSYLEIYNEKIRDLLSPsnKNKRKL 149
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    167 RVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPETNLSTeKVSKISL 246
Cdd:pfam00225  150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEESV-KTGKLNL 228
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    247 VDLAGSERADSTG-AKGTRLKEGANINKSLTTLGKVISALAEvskkkKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAAL 325
Cdd:pfam00225  229 VDLAGSERASKTGaAGGQRLKEAANINKSLSALGNVISALAD-----KKSKHIPYRDSKLTRLLQDSLGGNSKTLMIANI 303
                          330       340
                   ....*....|....*....|...
gi 86990458    326 SPADINYDETLSTLRYADRAKQI 348
Cdd:pfam00225  304 SPSSSNYEETLSTLRFASRAKNI 326
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
5-348 3.22e-116

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 363.32  E-value: 3.22e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    5 SVKVAVRVRPFNSRETSKESKCIIQM--QGNSTSIINPK-NPKEAPKSFSFDYSYwshtspeDPCfASQNRVYNDIGKEM 81
Cdd:cd01371    2 NVKVVVRCRPLNGKEKAAGALQIVDVdeKRGQVSVRNPKaTANEPPKTFTFDAVF-------DPN-SKQLDVYDETARPL 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   82 LLHAFEGYNVCIFAYGQTGAGKSYTMMGKQEESQA-GIIPQLCEELFEKINDNcNEEMSYSVEVSYMEIYCERVRDLLNP 160
Cdd:cd01371   74 VDSVLEGYNGTIFAYGQTGTGKTYTMEGKREDPELrGIIPNSFAHIFGHIARS-QNNQQFLVRVSYLEIYNEEIRDLLGK 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  161 KNKGNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVF--TQKKQDPETNLst 238
Cdd:cd01371  153 DQTKRLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIecSEKGEDGENHI-- 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  239 eKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEvskkkKKTDFIPYRDSVLTWLLRENLGGNSR 318
Cdd:cd01371  231 -RVGKLNLVDLAGSERQSKTGATGERLKEATKINLSLSALGNVISALVD-----GKSTHIPYRDSKLTRLLQDSLGGNSK 304
                        330       340       350
                 ....*....|....*....|....*....|
gi 86990458  319 TAMVAALSPADINYDETLSTLRYADRAKQI 348
Cdd:cd01371  305 TVMCANIGPADYNYDETLSTLRYANRAKNI 334
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
5-348 1.34e-111

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 350.86  E-value: 1.34e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    5 SVKVAVRVRPFNSRETSKESKCIIQMQGNSTSIINPKnpkEAPKSFSFDYSYwshtsPEDpcfASQNRVYNDIGKEMLLH 84
Cdd:cd01369    3 NIKVVCRFRPLNELEVLQGSKSIVKFDPEDTVVIATS---ETGKTFSFDRVF-----DPN---TTQEDVYNFAAKPIVDD 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   85 AFEGYNVCIFAYGQTGAGKSYTMMGKQEESQA-GIIPQLCEELFEKINDNCnEEMSYSVEVSYMEIYCERVRDLLNPKNK 163
Cdd:cd01369   72 VLNGYNGTIFAYGQTSSGKTYTMEGKLGDPESmGIIPRIVQDIFETIYSMD-ENLEFHVKVSYFEIYMEKIRDLLDVSKT 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  164 gNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKkqdpetNLSTE--KV 241
Cdd:cd01369  151 -NLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQE------NVETEkkKS 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  242 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEvskkKKKTdFIPYRDSVLTWLLRENLGGNSRTAM 321
Cdd:cd01369  224 GKLYLVDLAGSEKVSKTGAEGAVLDEAKKINKSLSALGNVINALTD----GKKT-HIPYRDSKLTRILQDSLGGNSRTTL 298
                        330       340
                 ....*....|....*....|....*..
gi 86990458  322 VAALSPADINYDETLSTLRYADRAKQI 348
Cdd:cd01369  299 IICCSPSSYNESETLSTLRFGQRAKTI 325
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
5-349 1.01e-109

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 346.24  E-value: 1.01e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    5 SVKVAVRVRPFNSRETSKESKCIIQMQGNSTSIINPKNpkeapKSFSFDYSYwshtSPEDPcfasQNRVYNDIGKEMLLH 84
Cdd:cd01372    2 SVRVAVRVRPLLPKEIIEGCRICVSFVPGEPQVTVGTD-----KSFTFDYVF----DPSTE----QEEVYNTCVAPLVDG 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   85 AFEGYNVCIFAYGQTGAGKSYTMMG----KQEESQAGIIPQLCEELFEKInDNCNEEMSYSVEVSYMEIYCERVRDLLNP 160
Cdd:cd01372   69 LFEGYNATVLAYGQTGSGKTYTMGTaytaEEDEEQVGIIPRAIQHIFKKI-EKKKDTFEFQLKVSFLEIYNEEIRDLLDP 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  161 KN--KGNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPETNLST 238
Cdd:cd01372  148 ETdkKPTISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKNGPIAPMS 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  239 EK------VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAevsKKKKKTDFIPYRDSVLTWLLREN 312
Cdd:cd01372  228 ADdknstfTSKFHFVDLAGSERLKRTGATGDRLKEGISINSGLLALGNVISALG---DESKKGAHVPYRDSKLTRLLQDS 304
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 86990458  313 LGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIK 349
Cdd:cd01372  305 LGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
5-348 1.96e-107

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 339.69  E-value: 1.96e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    5 SVKVAVRVRPFNSRETSKESKCIIQMQGNSTSIINPKnpkeaPKSFSFDYSYWSHtspedpcfaSQNR-VYNDIGKEMLL 83
Cdd:cd01374    1 KITVTVRVRPLNSREIGINEQVAWEIDNDTIYLVEPP-----STSFTFDHVFGGD---------STNReVYELIAKPVVK 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   84 HAFEGYNVCIFAYGQTGAGKSYTMMGKQEEsqAGIIPQLCEELFEKINDNCNEEmsYSVEVSYMEIYCERVRDLLNPKNK 163
Cdd:cd01374   67 SALEGYNGTIFAYGQTSSGKTFTMSGDEDE--PGIIPLAIRDIFSKIQDTPDRE--FLLRVSYLEIYNEKINDLLSPTSQ 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  164 gNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPETNlSTEKVSK 243
Cdd:cd01374  143 -NLKIRDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGELEE-GTVRVST 220
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  244 ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEvskkKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVA 323
Cdd:cd01374  221 LNLIDLAGSERAAQTGAAGVRRKEGSHINKSLLTLGTVISKLSE----GKVGGHIPYRDSKLTRILQPSLGGNSRTAIIC 296
                        330       340
                 ....*....|....*....|....*
gi 86990458  324 ALSPADINYDETLSTLRYADRAKQI 348
Cdd:cd01374  297 TITPAESHVEETLNTLKFASRAKKI 321
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
11-350 1.33e-103

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 329.55  E-value: 1.33e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   11 RVRPFNSRETSKESKCI-IQMQGNSTSIINPKNPKEapKSFSFDYSYwshtspeDPCfASQNRVYNDIgkEMLLH-AFEG 88
Cdd:cd01366    9 RVRPLLPSEENEDTSHItFPDEDGQTIELTSIGAKQ--KEFSFDKVF-------DPE-ASQEDVFEEV--SPLVQsALDG 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   89 YNVCIFAYGQTGAGKSYTMMGKqeESQAGIIPQLCEELFEKINDNCNEEMSYSVEVSYMEIYCERVRDLLNPKNKGNLR- 167
Cdd:cd01366   77 YNVCIFAYGQTGSGKTYTMEGP--PESPGIIPRALQELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLAPGNAPQKKl 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  168 -VREHPLLGP-YVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQkkqdpeTNLSTEK--VSK 243
Cdd:cd01366  155 eIRHDSEKGDtTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISG------RNLQTGEisVGK 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  244 ISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAevskkkKKTDFIPYRDSVLTWLLRENLGGNSRTAMVA 323
Cdd:cd01366  229 LNLVDLAGSERLNKSGATGDRLKETQAINKSLSALGDVISALR------QKQSHIPYRNSKLTYLLQDSLGGNSKTLMFV 302
                        330       340
                 ....*....|....*....|....*..
gi 86990458  324 ALSPADINYDETLSTLRYADRAKQIKC 350
Cdd:cd01366  303 NISPAESNLNETLNSLRFASKVNSCEL 329
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
5-348 1.90e-101

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 324.30  E-value: 1.90e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    5 SVKVAVRVRPFNSRETSKESKCIIQMQGNSTSIINPKNPKEA-----------------PKSFSFDYSYwshtspeDPcF 67
Cdd:cd01370    1 SLTVAVRVRPFSEKEKNEGFRRIVKVMDNHMLVFDPKDEEDGffhggsnnrdrrkrrnkELKYVFDRVF-------DE-T 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   68 ASQNRVYNDIGKEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGKqeESQAGIIPQLCEELFEKInDNCNEEMSYSVEVSYM 147
Cdd:cd01370   73 STQEEVYEETTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGT--PQEPGLMVLTMKELFKRI-ESLKDEKEFEVSMSYL 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  148 EIYCERVRDLLNPKNKGnLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQ 227
Cdd:cd01370  150 EIYNETIRDLLNPSSGP-LELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQ 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  228 KKQDPETNLSTeKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVSKKKKktdFIPYRDSVLTW 307
Cdd:cd01370  229 QDKTASINQQV-RQGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALADPGKKNK---HIPYRDSKLTR 304
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 86990458  308 LLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 348
Cdd:cd01370  305 LLKDSLGGNCRTVMIANISPSSSSYEETHNTLKYANRAKNI 345
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
3-357 1.50e-95

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 308.87  E-value: 1.50e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    3 GASVKVAVRVRPFNSRETSKESKCIIQMQGNSTSII---NPKNPKEAPKSFSFDYSYWShtspedpcFASQNRVYNDIGK 79
Cdd:cd01364    1 GKNIQVVVRCRPFNLRERKASSHSVVEVDPVRKEVSvrtGGLADKSSTKTYTFDMVFGP--------EAKQIDVYRSVVC 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   80 EMLLHAFEGYNVCIFAYGQTGAGKSYTMMGK---------QEESQAGIIPQLCEELFEKINDNCNEemsYSVEVSYMEIY 150
Cdd:cd01364   73 PILDEVLMGYNCTIFAYGQTGTGKTYTMEGDrspneeytwELDPLAGIIPRTLHQLFEKLEDNGTE---YSVKVSYLEIY 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  151 CERVRDLLNPKNKGNLRVREHPLL----GPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFT 226
Cdd:cd01364  150 NEELFDLLSPSSDVSERLRMFDDPrnkrGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSITIH 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  227 QKKQDPEtNLSTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEvskkkkKTDFIPYRDSVLT 306
Cdd:cd01364  230 IKETTID-GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE------RAPHVPYRESKLT 302
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 86990458  307 WLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIKCNAVINED 357
Cdd:cd01364  303 RLLQDSLGGRTKTSIIATISPASVNLEETLSTLEYAHRAKNIKNKPEVNQK 353
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
6-357 1.54e-95

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 308.67  E-value: 1.54e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    6 VKVAVRVRPFNSRETSKE-SKCIIQMqgNSTSIINPKNPkeaPKSFSFDYSYWSHTSPEDpcfasqnrVYNDIGKEMLLH 84
Cdd:cd01373    3 VKVFVRIRPPAEREGDGEyGQCLKKL--SSDTLVLHSKP---PKTFTFDHVADSNTNQES--------VFQSVGKPIVES 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   85 AFEGYNVCIFAYGQTGAGKSYTMMGKQEESQA------GIIPQLCEELFEKIN---DNCNEEMSYSVEVSYMEIYCERVR 155
Cdd:cd01373   70 CLSGYNGTIFAYGQTGSGKTYTMWGPSESDNEsphglrGVIPRIFEYLFSLIQrekEKAGEGKSFLCKCSFLEIYNEQIY 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  156 DLLNPKNKgNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQdpETN 235
Cdd:cd01373  150 DLLDPASR-NLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEK--KAC 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  236 LSTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVSKKKKktDFIPYRDSVLTWLLRENLGG 315
Cdd:cd01373  227 FVNIRTSRLNLVDLAGSERQKDTHAEGVRLKEAGNINKSLSCLGHVINALVDVAHGKQ--RHVCYRDSKLTFLLRDSLGG 304
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 86990458  316 NSRTAMVAALSPADINYDETLSTLRYADRAKQIKCNAVINED 357
Cdd:cd01373  305 NAKTAIIANVHPSSKCFGETLSTLRFAQRAKLIKNKAVVNED 346
Kinesin_assoc pfam16183
Kinesin-associated;
352-509 2.27e-89

Kinesin-associated;


Pssm-ID: 465047 [Multi-domain]  Cd Length: 177  Bit Score: 285.20  E-value: 2.27e-89
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    352 AVINEDPNAKLVRELKEEVTRLKDLLRAQGLGDIIDTSMGSLTSSPSSCSLNSQVG-------------------LTSVT 412
Cdd:pfam16183    1 AVINEDPNNKLIRELKDEVARLRDLLYAQGLGDIIDTIAHPTKKRANTPAANASAAtaamagaspspslsalssrAASVS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    413 SIQERIMSTPGGEEAIERLKESEKIIAELNETWEEKLRKTEAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNLN 492
Cdd:pfam16183   81 SLHERIMFTPGSEEAIERLKETEKIIAELNETWEEKLRKTEAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNLN 160
                          170
                   ....*....|....*..
gi 86990458    493 EDPLMSECLLYYIKDGI 509
Cdd:pfam16183  161 EDPLMSECLLYYIKDGI 177
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
1-368 1.00e-80

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 275.46  E-value: 1.00e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    1 MSGASVKVAVRVRPFNSRETSKESKCIIQMQGNSTSIINpknpKEAPKSFSFDYSYWSHtspedpcfASQNRVYNDIGKE 80
Cdd:COG5059   13 LSSRNEKSVSDIKSTIRIIPGELGERLINTSKKSHVSLE----KSKEGTYAFDKVFGPS--------ATQEDVYEETIKP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   81 MLLHAFEGYNVCIFAYGQTGAGKSYTMMGkqEESQAGIIPQLCEELFEKInDNCNEEMSYSVEVSYMEIYCERVRDLLNP 160
Cdd:COG5059   81 LIDSLLLGYNCTVFAYGQTGSGKTYTMSG--TEEEPGIIPLSLKELFSKL-EDLSMTKDFAVSISYLEIYNEKIYDLLSP 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  161 KNKGnLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPETNLStek 240
Cdd:COG5059  158 NEES-LNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSET--- 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  241 vSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALaevsKKKKKTDFIPYRDSVLTWLLRENLGGNSRTA 320
Cdd:COG5059  234 -SKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINAL----GDKKKSGHIPYRESKLTRLLQDSLGGNCNTR 308
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 86990458  321 MVAALSPADINYDETLSTLRYADRAKQIK-----CNAVINEDPNAKLVRELKE 368
Cdd:COG5059  309 VICTISPSSNSFEETINTLKFASRAKSIKnkiqvNSSSDSSREIEEIKFDLSE 361
FHA_KIF1B cd22727
forkhead associated (FHA) domain found in kinesin-like protein KIF1B; KIF1B, also called Klp, ...
484-593 2.05e-78

forkhead associated (FHA) domain found in kinesin-like protein KIF1B; KIF1B, also called Klp, is a motor for anterograde transport of mitochondria. It has a microtubule plus end-directed motility. Isoform 1 mediates the transport of synaptic vesicles in neuronal cells, while isoform 2 is required for induction of neuronal apoptosis. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438779 [Multi-domain]  Cd Length: 110  Bit Score: 252.26  E-value: 2.05e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  484 KTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCLFRSERSNTGEVIVTLEPCERSETYVNG 563
Cdd:cd22727    1 KTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCIFRSERNNNGEVIVTLEPCERSETYVNG 80
                         90       100       110
                 ....*....|....*....|....*....|
gi 86990458  564 KRVAHPVQLRSGNRIIMGKNHVFRFNHPEQ 593
Cdd:cd22727   81 KRVVQPVQLRSGNRIIMGKNHVFRFNHPEQ 110
PLN03188 PLN03188
kinesin-12 family protein; Provisional
1-375 1.02e-74

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 271.42  E-value: 1.02e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458     1 MSGASVKVAVRVRPFNSREtskESKCIIQMQGNSTSIINPKnpkeapkSFSFDysywSHTSPEdpcfASQNRVYNDIGKE 80
Cdd:PLN03188   95 VSDSGVKVIVRMKPLNKGE---EGEMIVQKMSNDSLTINGQ-------TFTFD----SIADPE----STQEDIFQLVGAP 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    81 MLLHAFEGYNVCIFAYGQTGAGKSYTMMGKQ----EES----QAGIIPQLCEELFEKIND----NCNEEMSYSVEVSYME 148
Cdd:PLN03188  157 LVENCLAGFNSSVFAYGQTGSGKTYTMWGPAngllEEHlsgdQQGLTPRVFERLFARINEeqikHADRQLKYQCRCSFLE 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   149 IYCERVRDLLNPKNKgNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQK 228
Cdd:PLN03188  237 IYNEQITDLLDPSQK-NLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESR 315
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   229 KQDPETNLSTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVSKKKKKTDfIPYRDSVLTWL 308
Cdd:PLN03188  316 CKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRH-IPYRDSRLTFL 394
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 86990458   309 LRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIKCNAVINE----DPN--AKLVRELKEEVTRLKD 375
Cdd:PLN03188  395 LQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEvmqdDVNflREVIRQLRDELQRVKA 467
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
6-346 2.56e-71

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 241.91  E-value: 2.56e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    6 VKVAVRVRPFNSRETSKESKCIIQMQGNSTSIINP----------KNPKEAPKSFSFDYSYWSHTSpedpcfasQNRVYN 75
Cdd:cd01368    3 VKVYLRVRPLSKDELESEDEGCIEVINSTTVVLHPpkgsaankseRNGGQKETKFSFSKVFGPNTT--------QKEFFQ 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   76 DIGKEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGKQEesQAGIIPQLCEELFEKINDncneemsYSVEVSYMEIYCERVR 155
Cdd:cd01368   75 GTALPLVQDLLHGKNGLLFTYGVTNSGKTYTMQGSPG--DGGILPRSLDVIFNSIGG-------YSVFVSYIEIYNEYIY 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  156 DLLNP------KNKGNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKK 229
Cdd:cd01368  146 DLLEPspssptKKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKLVQAP 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  230 QDPETNLSTEK----VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEvSKKKKKTDFIPYRDSVL 305
Cdd:cd01368  226 GDSDGDVDQDKdqitVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGTCIEVLRE-NQLQGTNKMVPFRDSKL 304
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 86990458  306 TWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 346
Cdd:cd01368  305 THLFQNYFDGEGKASMIVNVNPCASDYDETLHVMKFSAIAQ 345
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
6-346 1.82e-70

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 238.56  E-value: 1.82e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    6 VKVAVRVRPFNSRETSKESK-CIIQMQGNSTSIINPKNPKEaPKSFSFDYSYwshtSPEDpcfaSQNRVYNDIGKEMLLH 84
Cdd:cd01376    2 VRVAVRVRPFVDGTAGASDPsCVSGIDSCSVELADPRNHGE-TLKYQFDAFY----GEES----TQEDIYAREVQPIVPH 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   85 AFEGYNVCIFAYGQTGAGKSYTMMGkqEESQAGIIPQLCEELFEkINDNcnEEMSYSVEVSYMEIYCERVRDLLNPKNKg 164
Cdd:cd01376   73 LLEGQNATVFAYGSTGAGKTFTMLG--SPEQPGLMPLTVMDLLQ-MTRK--EAWALSFTMSYLEIYQEKILDLLEPASK- 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  165 NLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPETNLSTekvSKI 244
Cdd:cd01376  147 ELVIREDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRERLAPFRQRT---GKL 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  245 SLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALaevskkKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAA 324
Cdd:cd01376  224 NLIDLAGSEDNRRTGNEGIRLKESGAINSSLFVLSKVVNAL------NKNLPRIPYRDSKLTRLLQDSLGGGSRCIMVAN 297
                        330       340
                 ....*....|....*....|..
gi 86990458  325 LSPADINYDETLSTLRYADRAK 346
Cdd:cd01376  298 IAPERTFYQDTLSTLNFAARSR 319
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
5-346 3.24e-69

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 235.55  E-value: 3.24e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    5 SVKVAVRVRPfnsreTSKESKCIIQM--QGNSTSIINPKNPKEAP-----KSFSFDYSYWSHTspedpcfASQNRVYNDI 77
Cdd:cd01375    1 KVQAFVRVRP-----TDDFAHEMIKYgeDGKSISIHLKKDLRRGVvnnqqEDWSFKFDGVLHN-------ASQELVYETV 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   78 GKEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGKQEE-SQAGIIPQLCEELFEKINDNCNEemSYSVEVSYMEIYCERVRD 156
Cdd:cd01375   69 AKDVVSSALAGYNGTIFAYGQTGAGKTFTMTGGTENyKHRGIIPRALQQVFRMIEERPTK--AYTVHVSYLEIYNEQLYD 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  157 LLNPKNKGN-----LRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQD 231
Cdd:cd01375  147 LLSTLPYVGpsvtpMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSRT 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  232 PetnlSTEKV--SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEvskkkKKTDFIPYRDSVLTWLL 309
Cdd:cd01375  227 L----SSEKYitSKLNLVDLAGSERLSKTGVEGQVLKEATYINKSLSFLEQAIIALSD-----KDRTHVPFRQSKLTHVL 297
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 86990458  310 RENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 346
Cdd:cd01375  298 RDSLGGNCNTVMVANIYGEAAQLEETLSTLRFASRVK 334
FHA_KIF1A cd22726
forkhead associated (FHA) domain found in kinesin-like protein KIF1A; KIF1A, also called ...
485-599 6.14e-69

forkhead associated (FHA) domain found in kinesin-like protein KIF1A; KIF1A, also called axonal transporter of synaptic vesicles (ATSV), microtubule-based motor KIF1A, Unc-104- and KIF1A-related protein, or Unc-104, is an axonal transporter of synaptic vesicles, which is mutated in hereditary sensory and autonomic neuropathy type 2. It is also required for neuronal dense core vesicle (DCV) transport to dendritic spines and axons. The calcium-dependent interaction with CALM1 increases vesicle motility, and interaction with the scaffolding proteins PPFIA2 and TANC2 recruits DCVs to synaptic sites. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438778 [Multi-domain]  Cd Length: 115  Bit Score: 225.96  E-value: 6.14e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  485 TPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCLFRSERSNTGEVIVTLEPCERSETYVNGK 564
Cdd:cd22726    1 TPHLVNLNEDPLMSECLLYYIKDGITRVGREDAERRQDIVLSGHFIKEEHCIFRSDTRSGGEAVVTLEPCEGADTYVNGK 80
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 86990458  565 RVAHPVQLRSGNRIIMGKNHVFRFNHPEQARAERE 599
Cdd:cd22726   81 KVTEPSILRSGNRIIMGKSHVFRFNHPEQARQERE 115
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
6-346 2.49e-68

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 232.57  E-value: 2.49e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    6 VKVAVRVRPFNSRETSKESKCIIQMQGNSTSIINPKNPKEAP------KSFSFDYSYWSHTSPEDpcfasqnrVYNDIGK 79
Cdd:cd01367    2 IKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLtkyienHTFRFDYVFDESSSNET--------VYRSTVK 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   80 EMLLHAFEGYNVCIFAYGQTGAGKSYTMMGK--QEESQAGIIPQLCEELFEKINDNCNEeMSYSVEVSYMEIYCERVRDL 157
Cdd:cd01367   74 PLVPHIFEGGKATCFAYGQTGSGKTYTMGGDfsGQEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDL 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  158 LNPKNKgnLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFtqkkQDPETNLS 237
Cdd:cd01367  153 LNRKKR--VRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIIL----RDRGTNKL 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  238 tekVSKISLVDLAGSER-ADSTGAKGTRLKEGANINKSLTTLGKVISALAevskkkKKTDFIPYRDSVLTWLLRENL-GG 315
Cdd:cd01367  227 ---HGKLSFVDLAGSERgADTSSADRQTRMEGAEINKSLLALKECIRALG------QNKAHIPFRGSKLTQVLKDSFiGE 297
                        330       340       350
                 ....*....|....*....|....*....|.
gi 86990458  316 NSRTAMVAALSPADINYDETLSTLRYADRAK 346
Cdd:cd01367  298 NSKTCMIATISPGASSCEHTLNTLRYADRVK 328
FHA_KIF1 cd22705
forkhead associated (FHA) domain found in the kinesin-like protein KIF1 family; The KIF1 ...
485-590 1.68e-62

forkhead associated (FHA) domain found in the kinesin-like protein KIF1 family; The KIF1 family includes KIF1A, KIF1B, and KIF1C. KIF1A, also called axonal transporter of synaptic vesicles (ATSV), microtubule-based motor KIF1A, Unc-104- and KIF1A-related protein, or Unc-104, is an axonal transporter of synaptic vesicles, which is mutated in hereditary sensory and autonomic neuropathy type 2. It is also required for neuronal dense core vesicle (DCV) transport to dendritic spines and axons. The calcium-dependent interaction with CALM1 increases vesicle motility, and interaction with the scaffolding proteins PPFIA2 and TANC2 recruits DCVs to synaptic sites. KIF1B, also called Klp, is a motor for anterograde transport of mitochondria. It has a microtubule plus end-directed motility. Isoform 1 mediates the transport of synaptic vesicles in neuronal cells, while isoform 2 is required for induction of neuronal apoptosis. KIF1C is a new kinesin-like protein involved in vesicle transport from the Golgi apparatus to the endoplasmic reticulum. It has a microtubule plus end-directed motility. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438757 [Multi-domain]  Cd Length: 101  Bit Score: 207.09  E-value: 1.68e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  485 TPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCLFRSErsntgEVIVTLEPCERSETYVNGK 564
Cdd:cd22705    1 TPHLVNLNEDPLMSECLLYYIKPGITRVGRADADVPQDIQLSGTHILEEHCTFENE-----DGVVTLEPCEGALTYVNGK 75
                         90       100
                 ....*....|....*....|....*.
gi 86990458  565 RVAHPVQLRSGNRIIMGKNHVFRFNH 590
Cdd:cd22705   76 RVTEPTRLKTGSRVILGKNHVFRFNH 101
FHA_KIF1C cd22728
forkhead associated (FHA) domain found in kinesin-like protein KIF1C; KIF1C is a new ...
485-590 3.86e-55

forkhead associated (FHA) domain found in kinesin-like protein KIF1C; KIF1C is a new kinesin-like protein involved in vesicle transport from the Golgi apparatus to the endoplasmic reticulum. It has a microtubule plus end-directed motility. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438780 [Multi-domain]  Cd Length: 102  Bit Score: 186.23  E-value: 3.86e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  485 TPHLVNLNEDPLMSECLLYYIKDGITRVGQADAerrqDIVLSGAHIKEEHCLFRSERSNTGEVIVTLEPCERSETYVNGK 564
Cdd:cd22728    1 TPHLVNLNEDPLMSECLLYHIKDGVTRVGQVDV----DIKLSGQFIREQHCLFRSIPNPSGEVVVTLEPCEGAETYVNGK 76
                         90       100
                 ....*....|....*....|....*.
gi 86990458  565 RVAHPVQLRSGNRIIMGKNHVFRFNH 590
Cdd:cd22728   77 QVTEPLVLKSGNRIVMGKNHVFRFNH 102
FHA_KIF14 cd22707
forkhead associated (FHA) domain found in kinesin-like protein KIF14 and similar proteins; ...
484-591 5.87e-37

forkhead associated (FHA) domain found in kinesin-like protein KIF14 and similar proteins; KIF14 is a microtubule motor protein that binds to microtubules with high affinity through each tubulin heterodimer and has an ATPase activity. It plays a role in many processes like cell division, cytokinesis and in cell proliferation and apoptosis. KIF14 is a potential oncogene and is involved in the metastasis of various cancers. Mutations of KIF14 cause primary microcephaly by impairing cytokinesis. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438759 [Multi-domain]  Cd Length: 108  Bit Score: 134.70  E-value: 5.87e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  484 KTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCLFRSERSntgevIVTLEPCERSETYVNG 563
Cdd:cd22707    6 KLPNLVNLNEDPQLSEMLLYMLKEGQTRVGRSKASSSHDIQLSGALIADDHCTIENNGG-----KVTIIPVGDAETYVNG 80
                         90       100
                 ....*....|....*....|....*...
gi 86990458  564 KRVAHPVQLRSGNRIIMGKNHVFRFNHP 591
Cdd:cd22707   81 ELISEPTVLHHGDRVILGGDHYFRFNHP 108
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
8-284 4.22e-36

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 134.78  E-value: 4.22e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458    8 VAVRVRPFNSRETSKESKCIIqmqgnstsiinpknpkeapksfsFDYSYWSHTSPEDpcfasqnrVYNDIGKeMLLHAFE 87
Cdd:cd01363    1 VLVRVNPFKELPIYRDSKIIV-----------------------FYRGFRRSESQPH--------VFAIADP-AYQSMLD 48
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458   88 GYNV-CIFAYGQTGAGKSYTMMgkqeesqaGIIPQLCEELFEKINDNCNEEMSYsvevsymeiycervrdllnpknkgnl 166
Cdd:cd01363   49 GYNNqSIFAYGESGAGKTETMK--------GVIPYLASVAFNGINKGETEGWVY-------------------------- 94
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  167 rvrehpllgpyvedLSKLAVTSYTDIADLMDAGNKARTvAATNMNETSSRSHAVFTIVftqkkqdpetnlstekvskisl 246
Cdd:cd01363   95 --------------LTEITVTLEDQILQANPILEAFGN-AKTTRNENSSRFGKFIEIL---------------------- 137
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 86990458  247 VDLAGSERadstgakgtrlkeganINKSLTTLGKVISA 284
Cdd:cd01363  138 LDIAGFEI----------------INESLNTLMNVLRA 159
FHA_KIF28P cd22709
forkhead associated (FHA) domain found in kinesin-like protein KIF28P and similar proteins; ...
486-591 8.69e-36

forkhead associated (FHA) domain found in kinesin-like protein KIF28P and similar proteins; KIF28P, also called kinesin-like protein 6 (KLP6), is a microtubule-dependent motor protein required for mitochondrion morphology and transport of mitochondria in neuronal cells. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438761 [Multi-domain]  Cd Length: 102  Bit Score: 131.18  E-value: 8.69e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  486 PHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCLFrserSNTGEViVTLEPC-ERSETYVNGK 564
Cdd:cd22709    1 PHLLNLNEDPQLSGVIVHFLQEGETTIGRADAEPEPDIVLSGLSIQKQHAVI----TNTDGK-VTIEPVsPGAKVIVNGV 75
                         90       100
                 ....*....|....*....|....*..
gi 86990458  565 RVAHPVQLRSGNRIIMGKNHVFRFNHP 591
Cdd:cd22709   76 PVTGETELHHLDRVILGSNHLYVFVGP 102
FHA_KIF16 cd22708
forkhead associated (FHA) domain found in the kinesin-like protein KIF16 family; The KIF16 ...
484-591 1.55e-32

forkhead associated (FHA) domain found in the kinesin-like protein KIF16 family; The KIF16 family includes StARD9/KIF16A and KIF16B. StARD9, also called START domain-containing protein 9, or kinesin-like protein KIF16A, is a microtubule-dependent motor protein required for spindle pole assembly during mitosis. It is required to stabilize the pericentriolar material (PCM). KIF16B, also called sorting nexin-23, is a plus end-directed microtubule-dependent motor protein involved in endosome transport and receptor recycling and degradation. It regulates the plus end motility of early endosomes and the balance between recycling and degradation of receptors such as EGF receptor (EGFR) and FGF receptor (FGFR). It regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438760 [Multi-domain]  Cd Length: 109  Bit Score: 121.99  E-value: 1.55e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  484 KTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCLFRSERsntGEviVTLEPCERSETYVNG 563
Cdd:cd22708    7 ELPHLIGIDDDLLSTGVVLYHLKEGKTRIGREDAPQEQDIVLDGEDIEAEHCIIENVG---GV--VTLHPLPGALCAVNG 81
                         90       100
                 ....*....|....*....|....*...
gi 86990458  564 KRVAHPVQLRSGNRIIMGKNHVFRFNHP 591
Cdd:cd22708   82 QVITQPTRLTQGDVILLGKTNMFRFNHP 109
FHA_KIF13 cd22706
forkhead associated (FHA) domain found in the kinesin-like protein KIF13 family; The KIF13 ...
488-591 8.64e-31

forkhead associated (FHA) domain found in the kinesin-like protein KIF13 family; The KIF13 family includes KIF13A and KIF13B. KIF13A, also called kinesin-like protein RBKIN, is a plus end-directed microtubule-dependent motor protein involved in intracellular transport and in regulating various processes such as mannose-6-phosphate receptor (M6PR) transport to the plasma membrane, endosomal sorting during melanosome biogenesis, and cytokinesis. It mediates the transport of M6PR-containing vesicles from trans-Golgi network to the plasma membrane via direct interaction with the AP-1 complex. During melanosome maturation, KIF13A is required for delivering melanogenic enzymes from recycling endosomes to nascent melanosomes by creating peripheral recycling endosomal subdomains in melanocytes. It is also required for the abscission step in cytokinesis: it mediates translocation of ZFYVE26, and possibly TTC19, to the midbody during cytokinesis. KIF13B, also called kinesin-like protein GAKIN, is a novel kinesin-like protein that associates with the human homolog of the Drosophila discs large tumor suppressor in T lymphocytes. It is involved in reorganization of the cortical cytoskeleton. It regulates axon formation by promoting the formation of extra axons. KIF13B may be functionally important for the intracellular trafficking of membrane-associated guanylate kinase homologs (MAGUKs) and associated protein complexes. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438758 [Multi-domain]  Cd Length: 101  Bit Score: 116.62  E-value: 8.64e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  488 LVNLNEDPLMSECLLYYIKDgITRVGQADAERRQDIVLSGAHIKEEHCLFRSErsntgEVIVTLEPCERSETYVNGKRVA 567
Cdd:cd22706    4 LVNLNADPSLNELLVYYLKE-HTLIGRSDAPTQQDIQLSGLGIQPEHCIITIE-----NEDVYLTPLEGARTCVNGSIVT 77
                         90       100
                 ....*....|....*....|....
gi 86990458  568 HPVQLRSGNRIIMGKNHVFRFNHP 591
Cdd:cd22706   78 EKTQLRHGDRILWGNNHFFRLNCP 101
FHA_KIF16A_STARD9 cd22731
forkhead associated (FHA) domain found in StAR-related lipid transfer protein 9 (StARD9); ...
478-600 3.73e-29

forkhead associated (FHA) domain found in StAR-related lipid transfer protein 9 (StARD9); StARD9, also called START domain-containing protein 9, or kinesin-like protein KIF16A, is a microtubule-dependent motor protein required for spindle pole assembly during mitosis. It is required to stabilize the pericentriolar material (PCM). The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438783 [Multi-domain]  Cd Length: 119  Bit Score: 112.95  E-value: 3.73e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  478 GVFSPKKTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCLFRSERSntgevIVTLEPCERS 557
Cdd:cd22731    1 GVTIDSNLPHLIAMDDDILSTGVVLYHLREGTTKIGRSDSEQEQDIVLQGPWIERDHCMIHNECG-----VVTLRPAQGA 75
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 86990458  558 ETYVNGKRVAHPVQLRSGNRIIMGKNHVFRFNHPEQARAEREK 600
Cdd:cd22731   76 QCTVNGREVTESCRLSQGAVIVLGKTHKFRFNHPAEAAILRQR 118
FHA_KIF16B cd22732
forkhead associated (FHA) domain found in kinesin-like protein KIF16B; KIF16B, also called ...
478-599 3.24e-25

forkhead associated (FHA) domain found in kinesin-like protein KIF16B; KIF16B, also called sorting nexin-23, is a plus end-directed microtubule-dependent motor protein involved in endosome transport and receptor recycling and degradation. It regulates the plus end motility of early endosomes and the balance between recycling and degradation of receptors such as EGF receptor (EGFR) and FGF receptor (FGFR). It regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438784 [Multi-domain]  Cd Length: 117  Bit Score: 101.55  E-value: 3.24e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  478 GVFSPKKTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCLFRSERSNtgeviVTLEPCERS 557
Cdd:cd22732    1 GVVLDSELPHLIGIDDDLLSTGIILYHLKEGRTYVGRDDATTEQDIVLHGLDLESEHCIFENLNGT-----VTLIPLNGA 75
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 86990458  558 ETYVNGKRVAHPVQLRSGNRIIMGKNHVFRFNHPEQARAERE 599
Cdd:cd22732   76 QCSVNGVQITEATQLNQGAVILLGRTNMFRFNHPKEAAKLRE 117
FHA_KIF13B cd22730
forkhead associated (FHA) domain found in kinesin-like protein KIF13B; KIF13B, also called ...
488-591 4.44e-23

forkhead associated (FHA) domain found in kinesin-like protein KIF13B; KIF13B, also called kinesin-like protein GAKIN, is a novel kinesin-like protein that associates with the human homolog of the Drosophila discs large tumor suppressor in T lymphocytes. It is involved in reorganization of the cortical cytoskeleton. It regulates axon formation by promoting the formation of extra axons. KIF13B may be functionally important for the intracellular trafficking of membrane-associated guanylate kinase homologs (MAGUKs) and associated protein complexes. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438782 [Multi-domain]  Cd Length: 99  Bit Score: 94.60  E-value: 4.44e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  488 LVNLNEDPLMSECLLYYIKDGiTRVGQADAerrQDIVLSGAHIKEEHCLFrsERSNTGEVIVTlePCERSETYVNGKRVA 567
Cdd:cd22730    4 LVNLNADPALNELLVYYLKEH-TLIGSADS---QDIQLCGMGILPEHCII--DITPEGQVMLT--PQKNTRTFVNGSAVT 75
                         90       100
                 ....*....|....*....|....
gi 86990458  568 HPVQLRSGNRIIMGKNHVFRFNHP 591
Cdd:cd22730   76 SPIQLHHGDRILWGNNHFFRINLP 99
FHA_KIF13A cd22729
forkhead associated (FHA) domain found in kinesin-like protein KIF13A; KIF13A, also called ...
488-600 2.82e-22

forkhead associated (FHA) domain found in kinesin-like protein KIF13A; KIF13A, also called kinesin-like protein RBKIN, is a plus end-directed microtubule-dependent motor protein involved in intracellular transport and in regulating various processes such as mannose-6-phosphate receptor (M6PR) transport to the plasma membrane, endosomal sorting during melanosome biogenesis, and cytokinesis. It mediates the transport of M6PR-containing vesicles from trans-Golgi network to the plasma membrane via direct interaction with the AP-1 complex. During melanosome maturation, KIF13A is required for delivering melanogenic enzymes from recycling endosomes to nascent melanosomes by creating peripheral recycling endosomal subdomains in melanocytes. It is also required for the abscission step in cytokinesis: it mediates translocation of ZFYVE26, and possibly TTC19, to the midbody during cytokinesis. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438781 [Multi-domain]  Cd Length: 109  Bit Score: 92.64  E-value: 2.82e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  488 LVNLNEDPLMSECLLYYIKDGiTRVGqadAERRQDIVLSGAHIKEEHCLFrsERSNTGEVIVTlePCERSETYVNGKRVA 567
Cdd:cd22729    4 LVNLNADPALNELLVYYLKDH-TRVG---ADTSQDIQLFGIGIQPEHCVI--DIAADGDVTLT--PKENARTCVNGTLVC 75
                         90       100       110
                 ....*....|....*....|....*....|...
gi 86990458  568 HPVQLRSGNRIIMGKNHVFRFNHPEQARAEREK 600
Cdd:cd22729   76 SVTQLWHGDRILWGNNHFFRINLPKRKRRDWLK 108
FHA_PHLB1 cd22713
forkhead associated (FHA) domain found in pleckstrin homology-like domain family B member 1 ...
472-594 2.00e-16

forkhead associated (FHA) domain found in pleckstrin homology-like domain family B member 1 (PHLDB1) and similar proteins; PHLDB1, also called protein LL5-alpha (LL5A), acts as an insulin-responsive protein that enhances Akt activation. PHLDB1 contains a pleckstrin homology domain, which binds phosphatidylinositol PI(3,4)P(2), PI(3,5)P(2), and PI(3,4,5)P(3), as well as a Forkhead-associated (FHA) domain and coiled coil regions. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438765  Cd Length: 120  Bit Score: 76.60  E-value: 2.00e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  472 EDGGTLGVFSPKktPHLVNLNEDPLMSECLLYYIKDGITRVGQADAErrqDIVLSGAHIKEEHCLFrsERSNTgevIVTL 551
Cdd:cd22713    5 ETGKALKVQTEK--PHLVSLGSGRLSTAVTLLPLPEGKTTIGTAASD---IISLQGPGVEPEHCYI--ENING---TVTL 74
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 86990458  552 EPCeRSETYVNGKRVAHPVQLRSGNRIIMGKNHVFRFNHPEQA 594
Cdd:cd22713   75 YPC-GNLCSVDGLPITEPTRLTQGCMICLGRSNYFRFNHPAEA 116
FHA_AFDN cd22711
forkhead associated (FHA) domain found in afadin and similar proteins; Afadin, also called ...
486-591 2.66e-16

forkhead associated (FHA) domain found in afadin and similar proteins; Afadin, also called ALL1-fused gene from chromosome 6 protein, protein AF-6, Afadin adherens junction formation factor, or MLLT4, is a nectin- and actin-filament-binding protein that connects nectin to the actin cytoskeleton. It is essential for the organization of adherens junctions. It may play a key role in the organization of epithelial structures of the embryonic ectoderm. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438763 [Multi-domain]  Cd Length: 106  Bit Score: 75.82  E-value: 2.66e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  486 PHLVNLNEDPLMSECL-LYYIKDGITRVG--QADAERRQDIVLSGAHIKEEHCLFRsersNTgEVIVTLEPCER-SETYV 561
Cdd:cd22711    2 PYLLELSPDGSDRDKPrRHRLQPNVTEVGseRSPANSGQFIQLFGPDILPRHCVIT----HM-EGVVTVTPASQdAETYV 76
                         90       100       110
                 ....*....|....*....|....*....|
gi 86990458  562 NGKRVAHPVQLRSGNRIIMGKNHVFRFNHP 591
Cdd:cd22711   77 NGQRIYETTMLQHGMVVQFGRSHTFRFCDP 106
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
5-158 1.42e-14

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 71.87  E-value: 1.42e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458      5 SVKVAVRVRPFNSREtskeskciIQMQGNSTSIINPKNPKEApKSFSFDYSYwshtspedPCFASQNRVYNDIgkEMLLH 84
Cdd:pfam16796   21 NIRVFARVRPELLSE--------AQIDYPDETSSDGKIGSKN-KSFSFDRVF--------PPESEQEDVFQEI--SQLVQ 81
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 86990458     85 -AFEGYNVCIFAYGQTGAGksytmmgkqeeSQAGIIPQLCEELFEKINDNCNEEmSYSVEVSYMEIYCERVRDLL 158
Cdd:pfam16796   82 sCLDGYNVCIFAYGQTGSG-----------SNDGMIPRAREQIFRFISSLKKGW-KYTIELQFVEIYNESSQDLL 144
FHA cd00060
forkhead associated (FHA) domain superfamily; Forkhead-associated (FHA) domains are small ...
487-588 1.77e-09

forkhead associated (FHA) domain superfamily; Forkhead-associated (FHA) domains are small phosphopeptide recognition modules mostly found in eubacteria and eukaryotes. It is about 95-120 residues long that fold into an 11-stranded beta-sandwich. FHA domains can mediate the recognition of phosphorylated and non-phosphorylated substrates, as well as protein oligomerization. They specifically recognize threonine phosphorylation (pThr) accompanying activation of protein serine/threonine kinases. FHA domains show diverse ligand specificity. They may recognize the pTXXD motif, the pTXXI/L motif, and TQ clusters (singly and multiply phosphorylated). In eukaryotes, FHA superfamily members include forkhead-type transcription factors, as well as other signaling proteins, such as many regulatory proteins, kinases, phosphatases, motor proteins called kinesins, and metabolic enzymes. Many of them localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. FHA domains play important roles in human diseases, particularly in relation to DNA damage responses and cancers. In bacteria, FHA domain-containing proteins may participate in injection of viral proteins into host cells, transmembrane transporters, and cell division. FHA domain-containing proteins rarely include more than one copy of the domain. The only exception in eukaryotes is the checkpoint kinase Rad53 from Saccharomyces cerevisiae, which harbors two FHA domains (FHA1 and FHA2) flanking a central kinase domain. The two FHA domains recognize different phosphorylated targets and function independently from one another. In contrast, Mycobacterium tuberculosis ABC transporter Rv1747 contains two FHA domains but only one of them is essential for protein function.


Pssm-ID: 438714 [Multi-domain]  Cd Length: 92  Bit Score: 55.74  E-value: 1.77e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  487 HLVNLNEDPLMSEcllYYIKDGITRVGQADAerrQDIVLSGAHIKEEHCLFRSERSNtgeviVTLEPCERS-ETYVNGKR 565
Cdd:cd00060    1 RLIVLDGDGGGRE---FPLTKGVVTIGRSPD---CDIVLDDPSVSRRHARIEVDGGG-----VYLEDLGSTnGTFVNGKR 69
                         90       100
                 ....*....|....*....|...
gi 86990458  566 VAHPVQLRSGNRIIMGkNHVFRF 588
Cdd:cd00060   70 ITPPVPLQDGDVIRLG-DTTFRF 91
FHA_RADIL-like cd22712
forkhead associated (FHA) domain found in the Ras-associating and dilute domain-containing ...
485-591 5.30e-07

forkhead associated (FHA) domain found in the Ras-associating and dilute domain-containing protein (Radil)-like family; The Radil-like family includes Radil and Ras-interacting protein 1 (Rain). Radil acts as an important small GTPase Rap1 effector required for cell spreading and migration. It regulates neutrophil adhesion and motility by linking Rap1 to beta2-integrin activation. Rain, also called Rasip1, is an endothelial-specific Ras-interacting protein required for the proper formation of vascular structures that develop via both vasculogenesis and angiogenesis. It acts as a critical and vascular-specific regulator of GTPase signaling, cell architecture, and adhesion, which is essential for endothelial cell morphogenesis and blood vessel tubulogenesis. Rain interacts with Ras in a GTP-dependent manner and may serve as an effector for endomembrane-associated Ras. Both Radil and Rain contain an FHA domain. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438764 [Multi-domain]  Cd Length: 120  Bit Score: 49.61  E-value: 5.30e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  485 TPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQ-DIVLSGAHIKEEHC-LFRSE---------RSNTGEVIVTLEP 553
Cdd:cd22712    3 YPYLLTLRGFSPKQDLLVYPLLEQVILVGSRTEGARKvDISLRAPDILPQHCwIRRKPeplsddedsDKESADYRVVLSP 82
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 86990458  554 CERSETYVNGKRVAHPVQLRSGNRIIMGKNHVFRFNHP 591
Cdd:cd22712   83 LRGAHVTVNGVPVLSETELHPGDLLGIGEHYLFLFKDP 120
FHA pfam00498
FHA domain; The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.
510-578 1.31e-06

FHA domain; The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.


Pssm-ID: 459831 [Multi-domain]  Cd Length: 66  Bit Score: 46.80  E-value: 1.31e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 86990458    510 TRVGQADaerRQDIVLSGAHIKEEHCLFRSERSNTgeviVTLEPC-ERSETYVNGKRVAH-PVQLRSGNRI 578
Cdd:pfam00498    1 VTIGRSP---DCDIVLDDPSVSRRHAEIRYDGGGR----FYLEDLgSTNGTFVNGQRLGPePVRLKDGDVI 64
FHA_RADIL cd22733
forkhead associated (FHA) domain found in Ras-associating and dilute domain-containing protein ...
484-591 3.58e-06

forkhead associated (FHA) domain found in Ras-associating and dilute domain-containing protein (Radil); Radil acts as an important small GTPase Rap1 effector required for cell spreading and migration. It regulates neutrophil adhesion and motility through linking Rap1 to beta2-integrin activation. It contains an FHA domain. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.


Pssm-ID: 438785  Cd Length: 113  Bit Score: 47.10  E-value: 3.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  484 KTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCLFRSER---SNTGEVIVtLEPCERSETY 560
Cdd:cd22733    4 QSPHLLLLQGYNQQHDCLVYLLNREQHTVGQETPSSKPNISLSAPDILPLHCTIRRVRlpkHRSEEKLV-LEPIPGAHVS 82
                         90       100       110
                 ....*....|....*....|....*....|.
gi 86990458  561 VNGKRVAHPVQLRSGNRIIMGKNHVFRFNHP 591
Cdd:cd22733   83 VNFSEVERTTLLRHGDLLSFGAYYLFLFKDP 113
FHA COG1716
Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms];
505-588 5.08e-06

Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms];


Pssm-ID: 441322 [Multi-domain]  Cd Length: 96  Bit Score: 46.10  E-value: 5.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  505 IKDGITRVGQADaerRQDIVLSGAHIKEEHCLFRseRSNTGEVIVTLEpcERSETYVNGKRVAHPVQLRSGNRIIMGKnH 584
Cdd:COG1716   18 LDGGPLTIGRAP---DNDIVLDDPTVSRRHARIR--RDGGGWVLEDLG--STNGTFVNGQRVTEPAPLRDGDVIRLGK-T 89

                 ....
gi 86990458  585 VFRF 588
Cdd:COG1716   90 ELRF 93
FHA_Ki67 cd22673
forkhead associated (FHA) domain found in proliferation marker protein Ki-67 and similar ...
522-588 2.95e-05

forkhead associated (FHA) domain found in proliferation marker protein Ki-67 and similar proteins; Ki-67, also called antigen identified by monoclonal antibody Ki-67, antigen KI-67, or antigen Ki67, acts as a biological surfactant to disperse mitotic chromosomes. It is required to maintain individual mitotic chromosomes dispersed in the cytoplasm following nuclear envelope disassembly. Ki-67 binds DNA with a preference for supercoiled DNA and AT-rich DNA. It may also play a role in chromatin organization. Ki-67 contains an FHA domain at its N-terminus. The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438725 [Multi-domain]  Cd Length: 95  Bit Score: 43.74  E-value: 2.95e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 86990458  522 DIVLSGAHIKEEHClfRSERSNTGEVivTLEP-CERSETYVNGKRVAHPVQLRSGNRIIMGkNHVFRF 588
Cdd:cd22673   32 DIRIQLPGVSREHC--RIEVDENGKA--YLENlSTTNPTLVNGKAIEKSAELKDGDVITIG-GRSFRF 94
FHA_MEK1-like cd22670
forkhead associated (FHA) domain found in Saccharomyces cerevisiae meiosis-specific serine ...
499-590 1.91e-03

forkhead associated (FHA) domain found in Saccharomyces cerevisiae meiosis-specific serine/threonine-protein kinase MEK1 and similar proteins; MEK1 (EC 2.7.11.1), also known as MRE4, is a meiosis-specific protein kinase required for chromosome synapsis and meiotic recombination. The recruitment and activation of MEK1 require the phosphorylation of the chromosome axis protein Hop1 at Thr318 (pT318), which is necessary for recognition by the MEK1 FHA domain. The FHA domain is a small phosphopeptide recognition module.


Pssm-ID: 438722 [Multi-domain]  Cd Length: 105  Bit Score: 39.13  E-value: 1.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 86990458  499 ECLLYYIKDGITRVGQadaERRQDIVLSGAHIKEEHCLFRSER-SNTGEVIVTLEPCERSETYVNGKRV--AHPVQLRSG 575
Cdd:cd22670   13 DIVLPIYKNQVITIGR---SPSCDIVINDPFVSRTHCRIYSVQfDESSAPLVYVEDLSSNGTYLNGKLIgrNNTVLLSDG 89
                         90
                 ....*....|....*
gi 86990458  576 NRIIMGKNHVFRFNH 590
Cdd:cd22670   90 DVIEIAHSATFVYVH 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH