|
Name |
Accession |
Description |
Interval |
E-value |
| PSAT_like |
cd00611 |
Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP) ... |
3-360 |
0e+00 |
|
Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Pssm-ID: 99736 [Multi-domain] Cd Length: 355 Bit Score: 637.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 3 INFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDATISDLRELLNVPSNYKILLMQGGGTGQFAAVA 82
Cdd:cd00611 1 INFSAGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 83 LNLIGKTGTADYVITGSWSAKAAKEAAQYGT-VNAVLPKLA-KYTTVPRQETWKLDPNASYVYYCDNETVEGVEFDFVPE 160
Cdd:cd00611 81 LNLLGDKGTADYVVTGAWSAKAAKEAKRYGGvVVIVAAKEEgKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFDEVPD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 161 VPaGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAGTTVIIVRDDLIGKHLKITPSILNFEQMDKNNSLLNTPPTF 240
Cdd:cd00611 161 TG-GVPLVADMSSNILSRPIDVSKFGVIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTF 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 241 GIYVMGLVFKWIKRNGGVAGMAKLAAAKSKLIYDTINQSNGFYYCPVDVNVRSRMNVPFRIgsasGDDALEKEFLSKAEA 320
Cdd:cd00611 240 AIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRL----GKEELEKEFLKEAEA 315
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 8928355 321 EGMIQLKGHRSVGGIRASLYNAVTLAETQQLANLMLAFYK 360
Cdd:cd00611 316 AGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEFQK 355
|
|
| PRK05355 |
PRK05355 |
3-phosphoserine/phosphohydroxythreonine transaminase; |
1-363 |
0e+00 |
|
3-phosphoserine/phosphohydroxythreonine transaminase;
Pssm-ID: 235428 Cd Length: 360 Bit Score: 588.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 1 MVINFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDATISDLRELLNVPSNYKILLMQGGGTGQFAA 80
Cdd:PRK05355 3 RVYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 81 VALNLIGKTGTADYVITGSWSAKAAKEAAQYGTVNAVLP-KLAKYTTVPRQETWKLDPNASYVYYCDNETVEGVEFDFVP 159
Cdd:PRK05355 83 VPMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEVNVAASsEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHELP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 160 EVpAGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAGTTVIIVRDDLIGKHLKITPSILNFEQMDKNNSLLNTPPT 239
Cdd:PRK05355 163 DT-GDVPLVADMSSDILSRPIDVSKFGLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 240 FGIYVMGLVFKWIKRNGGVAGMAKLAAAKSKLIYDTINQSNgFYYCPVDVNVRSRMNVPFRIgsasGDDALEKEFLSKAE 319
Cdd:PRK05355 242 FAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSD-FYRNPVAPEDRSRMNVPFTL----ADEELDKKFLAEAK 316
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 8928355 320 AEGMIQLKGHRSVGGIRASLYNAVTLAETQQLANLMLAFYKNNK 363
Cdd:PRK05355 317 AAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERRHG 360
|
|
| SerC |
COG1932 |
Phosphoserine aminotransferase [Coenzyme transport and metabolism, Amino acid transport and ... |
2-362 |
0e+00 |
|
Phosphoserine aminotransferase [Coenzyme transport and metabolism, Amino acid transport and metabolism]; Phosphoserine aminotransferase is part of the Pathway/BioSystem: Serine biosynthesis
Pssm-ID: 441535 Cd Length: 358 Bit Score: 562.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 2 VINFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDATISDLRELLNVPSNYKILLMQGGGTGQFAAV 81
Cdd:COG1932 3 VYNFSAGPAKLPEEVLEQAQAELLDWNGSGMSVMEMSHRSKPFKAIVEEAEADLRELLGIPDGYEVLFLQGGATAQFAMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 82 ALNLIGKTGTADYVITGSWSAKAAKEAAQYGTVNAVL-PKLAKYTTVPRQETWKLDPNASYVYYCDNETVEGVEFDFVPE 160
Cdd:COG1932 83 PMNLLRGGKKADYLVTGEWSKKAIKEAKKYGEVNVVAsSEDDNFGYIPKPEEWQLSPDADYVHYTSNETITGVEFHELPD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 161 VpAGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAGTTVIIVRDDLIGKHLKITPSILNFEQMDKNNSLLNTPPTF 240
Cdd:COG1932 163 V-GDVPLVADMSSDILSRPVDVSKFGLIYAGAQKNIGPAGLTVVIVRPDLLGRAERAIPSMLDYKTHADNDSMYNTPPTF 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 241 GIYVMGLVFKWIKRNGGVAGMAKLAAAKSKLIYDTINQSNgFYYCPVDVNVRSRMNVPFRIgsasGDDALEKEFLSKAEA 320
Cdd:COG1932 242 AIYLAGLVLKWLKEQGGLAAMEKRNAEKAALLYDWIDASD-FYTNPVDPEDRSRMNVTFDL----ADEELDAAFLAEAKA 316
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 8928355 321 EGMIQLKGHRSVGGIRASLYNAVTLAETQQLANLMLAFYKNN 362
Cdd:COG1932 317 AGLVGLKGHRSVGGMRASIYNAMPLEGVEALVDFMDEFERRH 358
|
|
| serC_1 |
TIGR01364 |
phosphoserine aminotransferase; This model represents the common form of the phosphoserine ... |
10-362 |
0e+00 |
|
phosphoserine aminotransferase; This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). [Amino acid biosynthesis, Serine family]
Pssm-ID: 130431 Cd Length: 349 Bit Score: 548.42 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 10 AKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDATISDLRELLNVPSNYKILLMQGGGTGQFAAVALNLIGKT 89
Cdd:TIGR01364 1 AALPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 90 GTADYVITGSWSAKAAKEAAQYGTVNAVL-PKLAKYTTVPRQETWKLDPNASYVYYCDNETVEGVEFDFVPEVpAGVPLV 168
Cdd:TIGR01364 81 KVADYIVTGAWSKKAAKEAKKYGVVNVVAsGKEGNYTKIPDPSTWEISEDAAYVHYCANETIHGVEFRELPDV-KNAPLV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 169 ADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAGTTVIIVRDDLIGKHLKITPSILNFEQMDKNNSLLNTPPTFGIYVMGLV 248
Cdd:TIGR01364 160 ADMSSNILSRPIDVSKFGLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLV 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 249 FKWIKRNGGVAGMAKLAAAKSKLIYDTINQSNGFYYCPVDVNVRSRMNVPFRIgsasGDDALEKEFLSKAEAEGMIQLKG 328
Cdd:TIGR01364 240 FKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTL----GNEELEKRFLKEAEERGLVSLKG 315
|
330 340 350
....*....|....*....|....*....|....
gi 8928355 329 HRSVGGIRASLYNAVTLAETQQLANLMLAFYKNN 362
Cdd:TIGR01364 316 HRSVGGMRASIYNAMPLEGVQALVDFMKEFQKKH 349
|
|
| Aminotran_5 |
pfam00266 |
Aminotransferase class-V; This domain is found in amino transferases, and other enzymes ... |
2-351 |
8.39e-60 |
|
Aminotransferase class-V; This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-.
Pssm-ID: 425567 [Multi-domain] Cd Length: 368 Bit Score: 197.08 E-value: 8.39e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 2 VINFAAGPAKLPEEVLKEVQENLVNCNGSGISvmEMSHRSSNYAKIHDATISDLRELLNVPSNYKILLMQGGgTGQFAAV 81
Cdd:pfam00266 1 IYLDSAATTQKPQEVLDAIQEYYTDYNGNVHR--GVHTLGKEATQAYEEAREKVAEFINAPSNDEIIFTSGT-TEAINLV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 82 ALNL---IGKTGTADYVITGSWSAK-AAKEAAQYGTVNAVLPKLAKYTTVPRQE-TWKLDPNASYVYYCDNETVEGVEFD 156
Cdd:pfam00266 78 ALSLgrsLKPGDEIVITEMEHHANLvPWQELAKRTGARVRVLPLDEDGLLDLDElEKLITPKTKLVAITHVSNVTGTIQP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 157 fVPEV-----PAGVPLVADMSSNFLSRPFDVSKFGV--IYAGAQKNIGPAGTTVIIVRDDLIGKHLKITPSILNFEQMDK 229
Cdd:pfam00266 158 -VPEIgklahQYGALVLVDAAQAIGHRPIDVQKLGVdfLAFSGHKLYGPTGIGVLYGRRDLLEKMPPLLGGGGMIETVSL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 230 NNSLLN---------TPPTFGIYVMGLVFKWIKrNGGVAGMAKLAAAKSKLIYDTInQSNGFYYCPVDVNVRSRMNVPFR 300
Cdd:pfam00266 237 QESTFAdapwkfeagTPNIAGIIGLGAALEYLS-EIGLEAIEKHEHELAQYLYERL-LSLPGIRLYGPERRASIISFNFK 314
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 8928355 301 IGSASgDDALekeFLSKAEAE-------GMIQLKGHRSVGGIRASLYNAVTLAETQQL 351
Cdd:pfam00266 315 GVHPH-DVAT---LLDESGIAvrsghhcAQPLMVRLGLGGTVRASFYIYNTQEDVDRL 368
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PSAT_like |
cd00611 |
Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP) ... |
3-360 |
0e+00 |
|
Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Pssm-ID: 99736 [Multi-domain] Cd Length: 355 Bit Score: 637.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 3 INFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDATISDLRELLNVPSNYKILLMQGGGTGQFAAVA 82
Cdd:cd00611 1 INFSAGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 83 LNLIGKTGTADYVITGSWSAKAAKEAAQYGT-VNAVLPKLA-KYTTVPRQETWKLDPNASYVYYCDNETVEGVEFDFVPE 160
Cdd:cd00611 81 LNLLGDKGTADYVVTGAWSAKAAKEAKRYGGvVVIVAAKEEgKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFDEVPD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 161 VPaGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAGTTVIIVRDDLIGKHLKITPSILNFEQMDKNNSLLNTPPTF 240
Cdd:cd00611 161 TG-GVPLVADMSSNILSRPIDVSKFGVIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTF 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 241 GIYVMGLVFKWIKRNGGVAGMAKLAAAKSKLIYDTINQSNGFYYCPVDVNVRSRMNVPFRIgsasGDDALEKEFLSKAEA 320
Cdd:cd00611 240 AIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRL----GKEELEKEFLKEAEA 315
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 8928355 321 EGMIQLKGHRSVGGIRASLYNAVTLAETQQLANLMLAFYK 360
Cdd:cd00611 316 AGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEFQK 355
|
|
| PRK05355 |
PRK05355 |
3-phosphoserine/phosphohydroxythreonine transaminase; |
1-363 |
0e+00 |
|
3-phosphoserine/phosphohydroxythreonine transaminase;
Pssm-ID: 235428 Cd Length: 360 Bit Score: 588.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 1 MVINFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDATISDLRELLNVPSNYKILLMQGGGTGQFAA 80
Cdd:PRK05355 3 RVYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 81 VALNLIGKTGTADYVITGSWSAKAAKEAAQYGTVNAVLP-KLAKYTTVPRQETWKLDPNASYVYYCDNETVEGVEFDFVP 159
Cdd:PRK05355 83 VPMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEVNVAASsEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHELP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 160 EVpAGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAGTTVIIVRDDLIGKHLKITPSILNFEQMDKNNSLLNTPPT 239
Cdd:PRK05355 163 DT-GDVPLVADMSSDILSRPIDVSKFGLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 240 FGIYVMGLVFKWIKRNGGVAGMAKLAAAKSKLIYDTINQSNgFYYCPVDVNVRSRMNVPFRIgsasGDDALEKEFLSKAE 319
Cdd:PRK05355 242 FAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSD-FYRNPVAPEDRSRMNVPFTL----ADEELDKKFLAEAK 316
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 8928355 320 AEGMIQLKGHRSVGGIRASLYNAVTLAETQQLANLMLAFYKNNK 363
Cdd:PRK05355 317 AAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERRHG 360
|
|
| SerC |
COG1932 |
Phosphoserine aminotransferase [Coenzyme transport and metabolism, Amino acid transport and ... |
2-362 |
0e+00 |
|
Phosphoserine aminotransferase [Coenzyme transport and metabolism, Amino acid transport and metabolism]; Phosphoserine aminotransferase is part of the Pathway/BioSystem: Serine biosynthesis
Pssm-ID: 441535 Cd Length: 358 Bit Score: 562.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 2 VINFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDATISDLRELLNVPSNYKILLMQGGGTGQFAAV 81
Cdd:COG1932 3 VYNFSAGPAKLPEEVLEQAQAELLDWNGSGMSVMEMSHRSKPFKAIVEEAEADLRELLGIPDGYEVLFLQGGATAQFAMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 82 ALNLIGKTGTADYVITGSWSAKAAKEAAQYGTVNAVL-PKLAKYTTVPRQETWKLDPNASYVYYCDNETVEGVEFDFVPE 160
Cdd:COG1932 83 PMNLLRGGKKADYLVTGEWSKKAIKEAKKYGEVNVVAsSEDDNFGYIPKPEEWQLSPDADYVHYTSNETITGVEFHELPD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 161 VpAGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAGTTVIIVRDDLIGKHLKITPSILNFEQMDKNNSLLNTPPTF 240
Cdd:COG1932 163 V-GDVPLVADMSSDILSRPVDVSKFGLIYAGAQKNIGPAGLTVVIVRPDLLGRAERAIPSMLDYKTHADNDSMYNTPPTF 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 241 GIYVMGLVFKWIKRNGGVAGMAKLAAAKSKLIYDTINQSNgFYYCPVDVNVRSRMNVPFRIgsasGDDALEKEFLSKAEA 320
Cdd:COG1932 242 AIYLAGLVLKWLKEQGGLAAMEKRNAEKAALLYDWIDASD-FYTNPVDPEDRSRMNVTFDL----ADEELDAAFLAEAKA 316
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 8928355 321 EGMIQLKGHRSVGGIRASLYNAVTLAETQQLANLMLAFYKNN 362
Cdd:COG1932 317 AGLVGLKGHRSVGGMRASIYNAMPLEGVEALVDFMDEFERRH 358
|
|
| serC_1 |
TIGR01364 |
phosphoserine aminotransferase; This model represents the common form of the phosphoserine ... |
10-362 |
0e+00 |
|
phosphoserine aminotransferase; This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). [Amino acid biosynthesis, Serine family]
Pssm-ID: 130431 Cd Length: 349 Bit Score: 548.42 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 10 AKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDATISDLRELLNVPSNYKILLMQGGGTGQFAAVALNLIGKT 89
Cdd:TIGR01364 1 AALPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 90 GTADYVITGSWSAKAAKEAAQYGTVNAVL-PKLAKYTTVPRQETWKLDPNASYVYYCDNETVEGVEFDFVPEVpAGVPLV 168
Cdd:TIGR01364 81 KVADYIVTGAWSKKAAKEAKKYGVVNVVAsGKEGNYTKIPDPSTWEISEDAAYVHYCANETIHGVEFRELPDV-KNAPLV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 169 ADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAGTTVIIVRDDLIGKHLKITPSILNFEQMDKNNSLLNTPPTFGIYVMGLV 248
Cdd:TIGR01364 160 ADMSSNILSRPIDVSKFGLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLV 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 249 FKWIKRNGGVAGMAKLAAAKSKLIYDTINQSNGFYYCPVDVNVRSRMNVPFRIgsasGDDALEKEFLSKAEAEGMIQLKG 328
Cdd:TIGR01364 240 FKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTL----GNEELEKRFLKEAEERGLVSLKG 315
|
330 340 350
....*....|....*....|....*....|....
gi 8928355 329 HRSVGGIRASLYNAVTLAETQQLANLMLAFYKNN 362
Cdd:TIGR01364 316 HRSVGGMRASIYNAMPLEGVQALVDFMKEFQKKH 349
|
|
| PLN02452 |
PLN02452 |
phosphoserine transaminase |
2-362 |
1.61e-179 |
|
phosphoserine transaminase
Pssm-ID: 178071 Cd Length: 365 Bit Score: 502.30 E-value: 1.61e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 2 VINFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDATISDLRELLNVPSNYKILLMQGGGTGQFAAV 81
Cdd:PLN02452 8 VFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 82 ALNLIGKTGTADYVITGSWSAKAAKEAAQYGTVN-AVLPKLAKYTTVPRQETWKLDPNASYVYYCDNETVEGVEFDFVPE 160
Cdd:PLN02452 88 PLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNvIASGKDEKYTKIPSVSEWELTPDAKFVHICANETIHGVEFKDYPD 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 161 VPaGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAGTTVIIVRDDLIGKHLKITPSILNFEQMDKNNSLLNTPPTF 240
Cdd:PLN02452 168 VG-NVPLVADMSSNFLSKPVDVSKYGVIYAGAQKNVGPSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCF 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 241 GIYVMGLVFKWIKRNGGVAGMAKLAAAKSKLIYDTINQSNGFYYCPVDVNVRSRMNVPFRIGSASgddaLEKEFLSKAEA 320
Cdd:PLN02452 247 GIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGSE----LEAEFVKEAAK 322
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 8928355 321 EGMIQLKGHRSVGGIRASLYNAVTLAETQQLANLMLAFYKNN 362
Cdd:PLN02452 323 AGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 364
|
|
| PRK12462 |
PRK12462 |
phosphoserine aminotransferase; Provisional |
3-361 |
2.29e-120 |
|
phosphoserine aminotransferase; Provisional
Pssm-ID: 183540 Cd Length: 364 Bit Score: 352.19 E-value: 2.29e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 3 INFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDATISDLRELLNVPSNYKILLMQGGGTGQFAAVA 82
Cdd:PRK12462 6 LNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 83 LNLI-GKTGTADYVITGSWSAKAAKEAAQYGTVNAVLP-KLAKYTTVPRQETWKLDPNASYVYYCDNETVEGVEFDFVPE 160
Cdd:PRK12462 86 MNFSrPGAAAPEYVTTGYWSRKAIGEASRVAAMRVVWDgAASGYRTLPSLAELDWDARAPFRHYVSNETVEGLQFPDAAG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 161 VPaGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAGTTVIIVRDDLIGKHLKITPSILNFEQMDKNNSLLNTPPTF 240
Cdd:PRK12462 166 LP-DSPLIADMSSDFMSRPFDVEAYGMVYAHAQKNLGPAGVTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVF 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 241 GIYVMGLVFKWIKRN-GGVAGMAKLAAAKSKLIYDTINQSNGFYYCPVDVNVRSRMNVPFRIGSAsgddALEKEFLSKAE 319
Cdd:PRK12462 245 AIYVMALVLRWIRDEiGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQP----RLDTLFKEQST 320
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 8928355 320 AEGMIQLKGHRSVGGIRASLYNAVTLAETQQLANLMLAFYKN 361
Cdd:PRK12462 321 EAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAIR 362
|
|
| Aminotran_5 |
pfam00266 |
Aminotransferase class-V; This domain is found in amino transferases, and other enzymes ... |
2-351 |
8.39e-60 |
|
Aminotransferase class-V; This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-.
Pssm-ID: 425567 [Multi-domain] Cd Length: 368 Bit Score: 197.08 E-value: 8.39e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 2 VINFAAGPAKLPEEVLKEVQENLVNCNGSGISvmEMSHRSSNYAKIHDATISDLRELLNVPSNYKILLMQGGgTGQFAAV 81
Cdd:pfam00266 1 IYLDSAATTQKPQEVLDAIQEYYTDYNGNVHR--GVHTLGKEATQAYEEAREKVAEFINAPSNDEIIFTSGT-TEAINLV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 82 ALNL---IGKTGTADYVITGSWSAK-AAKEAAQYGTVNAVLPKLAKYTTVPRQE-TWKLDPNASYVYYCDNETVEGVEFD 156
Cdd:pfam00266 78 ALSLgrsLKPGDEIVITEMEHHANLvPWQELAKRTGARVRVLPLDEDGLLDLDElEKLITPKTKLVAITHVSNVTGTIQP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 157 fVPEV-----PAGVPLVADMSSNFLSRPFDVSKFGV--IYAGAQKNIGPAGTTVIIVRDDLIGKHLKITPSILNFEQMDK 229
Cdd:pfam00266 158 -VPEIgklahQYGALVLVDAAQAIGHRPIDVQKLGVdfLAFSGHKLYGPTGIGVLYGRRDLLEKMPPLLGGGGMIETVSL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 230 NNSLLN---------TPPTFGIYVMGLVFKWIKrNGGVAGMAKLAAAKSKLIYDTInQSNGFYYCPVDVNVRSRMNVPFR 300
Cdd:pfam00266 237 QESTFAdapwkfeagTPNIAGIIGLGAALEYLS-EIGLEAIEKHEHELAQYLYERL-LSLPGIRLYGPERRASIISFNFK 314
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 8928355 301 IGSASgDDALekeFLSKAEAE-------GMIQLKGHRSVGGIRASLYNAVTLAETQQL 351
Cdd:pfam00266 315 GVHPH-DVAT---LLDESGIAvrsghhcAQPLMVRLGLGGTVRASFYIYNTQEDVDRL 368
|
|
| PRK03080 |
PRK03080 |
phosphoserine transaminase; |
4-324 |
1.32e-15 |
|
phosphoserine transaminase;
Pssm-ID: 235103 Cd Length: 378 Bit Score: 77.15 E-value: 1.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 4 NFAAGP-AKLPEEVLkevqENLVNcngsgiSVMEMSHRSS-NYAKIHDAtISDLRELLNVPSNYKILLMQGGGTGQFAAV 81
Cdd:PRK03080 15 RFSSGPcKKRPGWQL----EALAD------ALLGRSHRQKpVKALLKRV-IEGTRELLSLPEGYEVGIVPGSDTGAWEMA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 82 ALNLIGKTGtADYVITGSWSAKAAKEA-------------AQYGTvnavLPKLAKyttvprqetwkLDPNASYVYyCDNE 148
Cdd:PRK03080 84 LWSLLGARR-VDHLAWESFGSKWATDVvkqlkledprvleADYGS----LPDLSA-----------VDFDRDVVF-TWNG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 149 TVEGVE---FDFVPEVPAGVPLVaDMSSNFLSRPFDVSKFGVIYAGAQKNIG-PAGTTVIIVRDDLIGKHLKITPS---- 220
Cdd:PRK03080 147 TTTGVRvpvARWIGADREGLTIC-DATSAAFALPLDWSKLDVYTFSWQKVLGgEGGHGMAILSPRAVERLESYTPArpip 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 221 -ILNFEQMDK------NNSLLNTPPtfgiyvMGLVF------KWIKRNGGVAGMAKLAAAKSKLIYDTINQSNGFYYCPV 287
Cdd:PRK03080 226 kFFRLTKGGKaiensfKGQTINTPS------MLTVEdyldqlDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVA 299
|
330 340 350
....*....|....*....|....*....|....*..
gi 8928355 288 DVNVRSRMNVPFRIgsASGDDALEKEFLSKAEAEGMI 324
Cdd:PRK03080 300 DPATRSNTSVTLDF--VDAQAAVDAAAVAKLLRENGA 334
|
|
| AAT_I |
cd01494 |
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP) ... |
54-207 |
1.43e-12 |
|
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).
Pssm-ID: 99742 [Multi-domain] Cd Length: 170 Bit Score: 65.10 E-value: 1.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 54 DLRELLNvPSNYKILLmQGGGTGQFAAVALNLIGKTGTADYVITGSWSAKAAKEAAQYGTVNAVLPKLAKYTTVPRQ--E 131
Cdd:cd01494 8 KLARLLQ-PGNDKAVF-VPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGGLDVAilE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 132 TWKLDPNASYVYYCDNETVEGV-----EFDFVPEvPAGVPLVADMSSNFLSRPF-----DVSKFGVIYAGAQKNIGPAGT 201
Cdd:cd01494 86 ELKAKPNVALIVITPNTTSGGVlvplkEIRKIAK-EYGILLLVDAASAGGASPApgvliPEGGADVVTFSLHKNLGGEGG 164
|
....*.
gi 8928355 202 TVIIVR 207
Cdd:cd01494 165 GVVIVK 170
|
|
| AGAT_like |
cd06451 |
Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate ... |
5-243 |
4.66e-10 |
|
Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Pssm-ID: 99744 [Multi-domain] Cd Length: 356 Bit Score: 60.38 E-value: 4.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 5 FAAGPAKLPEEVLKevqenlvncngsgISVMEM-SHRSSNYAKIHDATISDLRELLNvPSNYKILLMQGGGTGQFAAVAL 83
Cdd:cd06451 3 LIPGPSNVPPRVLK-------------AMNRPMlGHRSPEFLALMDEILEGLRYVFQ-TENGLTFLLSGSGTGAMEAALS 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 84 NLIGKTGTADYVITGSWSAKAAKEAAQYGTVNAVLPK-------LAKYTTVPRQEtwklDPNASYVYYcdNETVEGVEFD 156
Cdd:cd06451 69 NLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKpwgeavsPEEIAEALEQH----DIKAVTLTH--NETSTGVLNP 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8928355 157 fVPEVPA-----GVPLVADMSSNFLSRPFDVSKFGV--IYAGAQKNIG-PAGTTVIIVRDDLIGKHLKITP---SILNFE 225
Cdd:cd06451 143 -LEGIGAlakkhDALLIVDAVSSLGGEPFRMDEWGVdvAYTGSQKALGaPPGLGPIAFSERALERIKKKTKpkgFYFDLL 221
|
250 260
....*....|....*....|..
gi 8928355 226 QM----DKNNSLLNTPPTFGIY 243
Cdd:cd06451 222 LLlkywGEGYSYPHTPPVNLLY 243
|
|
|